RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15442
         (599 letters)



>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
           catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 369

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 34/300 (11%), Positives = 80/300 (26%), Gaps = 66/300 (22%)

Query: 287 VEKHNTAARRLYIR-----GHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQK 341
           V         L  +       + +    +  +     D R+D  +LQ+LR++      + 
Sbjct: 78  VMASKKKPLWLEFKCADPTALSNETIGIIFKHGD---DLRQDMLILQILRIMESIWETES 134

Query: 342 ETSKRFLHFTVPRVVPVSAQLRLVEDNPASLSLLDIYKTSCSQIKIDYELPIVRYYDRLG 401
                 L       +    ++ ++E    + ++  I +++        +  +  +     
Sbjct: 135 ----LDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLSHWLKEKC 190

Query: 402 T-----LQSRGNMTLQLALACFAEYVLHLTRLNPDMMYLHRDCGLLNVSYFKFDIDDSKG 456
                   +        A  C A +VL +   + D + +     L ++  F   + + K 
Sbjct: 191 PIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMISETGNLFHI-DFGHILGNYKS 249

Query: 457 EFNNSRLEFENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNI 516
               ++                                             VPF LTP+ 
Sbjct: 250 FLGINK-------------------------------------------ERVPFVLTPDF 266

Query: 517 MEFLTDIGVDGPL-----TASIIATARCLVQPNFQVHAILKAILRDEMIAIQKKVKCSYL 571
           +  +   G    L         +     L      +  +   +L   M  +  K    Y+
Sbjct: 267 LFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTSKEDIEYI 326



 Score = 32.4 bits (73), Expect = 0.14
 Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 13/131 (9%)

Query: 101 VEKHNTAARRLYIR-----GHNGKIYPYLVMNDSGLSDSRRDERVLQLLRMLNHYLAKQV 155
           V         L  +       + +    +  +     D R+D  +LQ+LR++      + 
Sbjct: 78  VMASKKKPLWLEFKCADPTALSNETIGIIFKHGD---DLRQDMLILQILRIMESIWETES 134

Query: 156 STTTTTKMVYISLLYCLGSP---ASSQVMCDILRDIQSKL--IPRTMLKHWALHTFLSAT 210
                     IS    +G       +  +  I +            +L HW         
Sbjct: 135 LDLCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEE 194

Query: 211 DYWTFRKMVSS 221
            +    +    
Sbjct: 195 KFQAAVERFVY 205


>d1j8yf1 a.24.13.1 (F:3-86) Signal sequence recognition protein Ffh
           {Archaeon Acidianus ambivalens [TaxId: 2283]}
          Length = 84

 Score = 25.5 bits (56), Expect = 6.4
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 465 FENLSDSAKEIFRQKNLSEVYSNVDGAGVIIIIILGELNSNRPVPFRLTPNIME 518
            +NL D+ ++     +  +    V+     +   L   + N  + F LT  I E
Sbjct: 2   LDNLRDTVRKFLTGSSSYD--KAVEDFIKELQKSLISADVNVKLVFSLTNKIKE 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,287,079
Number of extensions: 108506
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 7
Length of query: 599
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 509
Effective length of database: 1,171,896
Effective search space: 596495064
Effective search space used: 596495064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.6 bits)