Query psy15443
Match_columns 73
No_of_seqs 35 out of 37
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 21:14:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0946|consensus 99.6 4.5E-16 9.8E-21 132.3 6.4 62 2-63 582-643 (970)
2 PF04869 Uso1_p115_head: Uso1 99.0 9.9E-11 2.1E-15 88.9 2.5 55 1-55 254-312 (312)
3 PF06854 Phage_Gp15: Bacteriop 29.9 28 0.00061 25.0 1.1 30 33-62 131-163 (183)
4 KOG0769|consensus 29.6 80 0.0017 25.3 3.6 38 22-59 244-285 (308)
5 smart00685 DM14 Repeats in fly 26.4 93 0.002 19.0 2.8 37 12-52 6-42 (59)
6 PRK05848 nicotinate-nucleotide 22.8 80 0.0017 24.0 2.4 26 2-27 94-120 (273)
7 PF00272 Cecropin: Cecropin fa 21.1 86 0.0019 17.1 1.7 13 42-54 1-13 (30)
8 PF14476 Chloroplast_duf: Peta 19.1 1.1E+02 0.0025 24.5 2.7 22 39-60 90-111 (313)
9 COG0864 NikR Predicted transcr 19.0 64 0.0014 22.4 1.1 21 2-22 20-40 (136)
10 COG2841 Uncharacterized protei 19.0 2.2E+02 0.0048 18.4 3.5 35 37-71 16-53 (72)
No 1
>KOG0946|consensus
Probab=99.63 E-value=4.5e-16 Score=132.27 Aligned_cols=62 Identities=39% Similarity=0.565 Sum_probs=59.5
Q ss_pred hhHHHHHHhHHHHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhCCCCh
Q psy15443 2 EMFLDKLSEVSRHEVYSRAAKKPQLDPERAHEPLLDYEFCKLYKALEAQSADWIYAKAKLPK 63 (73)
Q Consensus 2 E~fvekL~~ISkhE~ysrAakkPQ~~~~~p~~ll~DheF~kLfK~LE~~i~k~v~~~s~~~~ 63 (73)
|+|+++|+++||||+|+||+|+|||.++++..|+|||+||+|||++||.|+|++.++.+.-.
T Consensus 582 e~f~srL~~lsr~e~ysra~~kqq~~l~~~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~ 643 (970)
T KOG0946|consen 582 ENFISRLQRLSRHELYSRASMKQQPQLKSNTKLALDFEFKKLFKELEGLIAKLLSSKTEEEE 643 (970)
T ss_pred HHHHHHHHHhhHhHHHHHHhhccCccCCCCchhhhhHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 79999999999999999999999999999999999999999999999999999999887654
No 2
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=99.04 E-value=9.9e-11 Score=88.86 Aligned_cols=55 Identities=24% Similarity=0.505 Sum_probs=44.8
Q ss_pred ChhHHHHHHhHHHHHHHHHHhhCCCCCCCCCC----cchhHHHHHHHHHHHHHHHHHHH
Q psy15443 1 MEMFLDKLSEVSRHEVYSRAAKKPQLDPERAH----EPLLDYEFCKLYKALEAQSADWI 55 (73)
Q Consensus 1 ~E~fvekL~~ISkhE~ysrAakkPQ~~~~~p~----~ll~DheF~kLfK~LE~~i~k~v 55 (73)
+|+|++||.++.|+|.|+++.+.|++....++ +++||++||+|||.+|+.|.|+|
T Consensus 254 ~d~y~~kl~~lr~~~~f~~~~~~~~~~~~~~~~~lp~v~FD~~Fv~f~K~n~~rI~rai 312 (312)
T PF04869_consen 254 RDNYFSKLEQLRKSPLFRDAEKPPQLNPSSDDSGLPDVYFDWEFVEFFKDNYSRIQRAI 312 (312)
T ss_dssp HHHHHHHHHCCCCSTTHHHHTT-SS---SSGG----G----HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcChhhhccccCCCCCCCCCCccceeeeccHHHHHHHHHhHHHHHHhC
Confidence 37999999999999999999999999999999 99999999999999999999975
No 3
>PF06854 Phage_Gp15: Bacteriophage Gp15 protein; InterPro: IPR009660 This entry describes Gp15 from Bacteriophage A500 (Listeria phage A500), related proteins in other bacteriophage, and prophage regions of bacterial genomes. The function is unknown.
Probab=29.87 E-value=28 Score=24.96 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHHH--HHHHHHH-hhCCCC
Q psy15443 33 EPLLDYEFCKLYKALEA--QSADWIY-AKAKLP 62 (73)
Q Consensus 33 ~ll~DheF~kLfK~LE~--~i~k~v~-~~s~~~ 62 (73)
.=|+|++|+-||..|.. .+.+.++ .+.+++
T Consensus 131 ~~lhW~~F~aL~~~L~~~t~~~~ii~~R~~~~~ 163 (183)
T PF06854_consen 131 GYLHWWKFKALFNGLSEDTPFKQIIGIRSMDLS 163 (183)
T ss_pred ccCcHHHHHHHHhcCCCCCHHHHHHHHhccCcc
Confidence 34899999999999965 4555443 344444
No 4
>KOG0769|consensus
Probab=29.57 E-value=80 Score=25.29 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=24.1
Q ss_pred hCCCCCCCCCCcchhHH----HHHHHHHHHHHHHHHHHHhhC
Q psy15443 22 KKPQLDPERAHEPLLDY----EFCKLYKALEAQSADWIYAKA 59 (73)
Q Consensus 22 kkPQ~~~~~p~~ll~Dh----eF~kLfK~LE~~i~k~v~~~s 59 (73)
++|-.+.++..++++-+ -..-|||.||.+|.++|-.++
T Consensus 244 ~~~~g~~r~il~ll~~~~r~eGi~Gl~KGl~akilqtVLtaA 285 (308)
T KOG0769|consen 244 KKPRGSTRTILGLLYAIWRKEGILGLFKGLEAKILQTVLTAA 285 (308)
T ss_pred hcccccccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444321 234499999999999997654
No 5
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=26.40 E-value=93 Score=19.03 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q psy15443 12 SRHEVYSRAAKKPQLDPERAHEPLLDYEFCKLYKALEAQSA 52 (73)
Q Consensus 12 SkhE~ysrAakkPQ~~~~~p~~ll~DheF~kLfK~LE~~i~ 52 (73)
.|.+.|-.||.+ ++...++=-==.|.|.+|.+|..|.
T Consensus 6 ~R~~~yk~Aa~~----AK~~gd~~kAr~~~R~~K~~~~~I~ 42 (59)
T smart00685 6 QRQEQYKQAALQ----AKRAGDEEKARRHLRIAKQFDDAIK 42 (59)
T ss_pred HHHHHHHHHHHH----HHHcCCHHHHHHHHHHHhhHHHHHH
Confidence 478888888876 5556777667789999999999885
No 6
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.76 E-value=80 Score=23.95 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=21.8
Q ss_pred hhHHHHHHhHH-HHHHHHHHhhCCCCC
Q psy15443 2 EMFLDKLSEVS-RHEVYSRAAKKPQLD 27 (73)
Q Consensus 2 E~fvekL~~IS-khE~ysrAakkPQ~~ 27 (73)
-||++.+++|+ +.=.|+++++.|..+
T Consensus 94 ln~l~~~SGIAT~t~~~v~~~~~~~~~ 120 (273)
T PRK05848 94 LNLLQHSSGIATLTSRYVEALESHKVK 120 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 38999999998 888999999887543
No 7
>PF00272 Cecropin: Cecropin family; InterPro: IPR000875 Cecropins [, , ] are potent antibacterial proteins that constitute a main part of the cell-free immunity of insects. Cecropins are small proteins of about 35 amino acid residues active against both Gram-positive and Gram-negative bacteria. They seem to exert a lytic action on bacterial membranes. Cecropins isolated from insects other than Hyalophora cecropia (Cecropia moth) have been given various names; bactericidin, lepidopteran, sarcotoxin, etc. All of these peptides are structurally related. Cecropin P1, an intestinal antibacterial peptide from Sus scrofa (Pig), also belongs to this family.; GO: 0005576 extracellular region; PDB: 1F0G_A 1D9M_A 1D9J_A 1D9O_A 1D9P_A 1F0F_A 1D9L_A 1F0D_A 1F0E_A 2LA2_A.
Probab=21.05 E-value=86 Score=17.14 Aligned_cols=13 Identities=23% Similarity=0.480 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q psy15443 42 KLYKALEAQSADW 54 (73)
Q Consensus 42 kLfK~LE~~i~k~ 54 (73)
++||.+|+..-+.
T Consensus 1 k~~KkiE~~G~~v 13 (30)
T PF00272_consen 1 KFFKKIEKAGQNV 13 (30)
T ss_dssp HHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6899999886554
No 8
>PF14476 Chloroplast_duf: Petal formation-expressed
Probab=19.05 E-value=1.1e+02 Score=24.48 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC
Q psy15443 39 EFCKLYKALEAQSADWIYAKAK 60 (73)
Q Consensus 39 eF~kLfK~LE~~i~k~v~~~s~ 60 (73)
.=+||||.|+.+|--++.-..+
T Consensus 90 NAtRLfkqL~~~I~t~la~~~~ 111 (313)
T PF14476_consen 90 NATRLFKQLHSQIETTLALGNP 111 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc
Confidence 4589999999999888776555
No 9
>COG0864 NikR Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain [Transcription]
Probab=19.02 E-value=64 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=17.5
Q ss_pred hhHHHHHHhHHHHHHHHHHhh
Q psy15443 2 EMFLDKLSEVSRHEVYSRAAK 22 (73)
Q Consensus 2 E~fvekL~~ISkhE~ysrAak 22 (73)
+.++++-+..||+|.+..|++
T Consensus 20 D~~i~~rg~~sRSE~IrdAir 40 (136)
T COG0864 20 DELIEERGYSSRSELIRDALR 40 (136)
T ss_pred HHHHHHcCCCcHHHHHHHHHH
Confidence 567777788999999999986
No 10
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=18.99 E-value=2.2e+02 Score=18.41 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=24.8
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhCCCChhhhhhhhh
Q psy15443 37 DYEFCKLYKA---LEAQSADWIYAKAKLPKSAIEHQEK 71 (73)
Q Consensus 37 DheF~kLfK~---LE~~i~k~v~~~s~~~~~~~~~~~~ 71 (73)
|=+|.|||.. |.-.|..+...-.+++.-.|.+..|
T Consensus 16 dahF~rLfd~hn~LDd~I~~~E~n~~~~s~~ev~~LKK 53 (72)
T COG2841 16 DAHFARLFDKHNELDDRIKRAEGNRQPGSDAEVSNLKK 53 (72)
T ss_pred chHHHHHHHHHhHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 5689999974 6667777777667777766666544
Done!