Query psy15443
Match_columns 73
No_of_seqs 35 out of 37
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 21:14:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3grl_A General vesicular trans 99.4 2.4E-13 8.2E-18 110.8 5.2 59 2-60 575-633 (651)
2 2ket_A Cathelicidin-6; antimic 36.3 6 0.00021 20.6 -0.4 16 36-51 6-21 (27)
3 2la2_A Cecropin, papiliocin; a 24.7 37 0.0013 18.9 1.5 17 42-58 3-22 (38)
4 2e7v_A Transmembrane protease; 20.5 98 0.0034 19.9 3.2 22 38-59 28-49 (121)
5 3u43_A Colicin-E2 immunity pro 14.9 86 0.0029 19.8 1.9 30 3-37 14-55 (94)
6 2cpg_A REPA protein, transcrip 14.7 73 0.0025 15.9 1.3 13 10-22 25-37 (45)
7 3g1g_A GAG polyprotein, capsid 12.7 1.7E+02 0.0057 18.5 2.8 20 29-49 8-27 (87)
8 1ivz_A Hypothetical protein 11 10.1 2.9E+02 0.0099 18.1 3.4 22 38-59 35-56 (132)
9 3ost_A Serine/threonine-protei 8.8 2.3E+02 0.0079 19.0 2.5 15 39-53 108-122 (128)
10 1t6a_A Rbstp2229 gene product; 8.6 80 0.0027 21.4 0.2 11 39-49 100-111 (126)
No 1
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.39 E-value=2.4e-13 Score=110.83 Aligned_cols=59 Identities=41% Similarity=0.588 Sum_probs=56.6
Q ss_pred hhHHHHHHhHHHHHHHHHHhhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhCC
Q psy15443 2 EMFLDKLSEVSRHEVYSRAAKKPQLDPERAHEPLLDYEFCKLYKALEAQSADWIYAKAK 60 (73)
Q Consensus 2 E~fvekL~~ISkhE~ysrAakkPQ~~~~~p~~ll~DheF~kLfK~LE~~i~k~v~~~s~ 60 (73)
|+|++||.++.+||.|++|+++||+...+|++|+|||+||+|||.+|+.|.|++..+.+
T Consensus 575 d~y~~kl~~lr~~~~f~~~~~~~~~~~~~~~~v~fd~~F~~~fK~~~~ri~~al~~~~~ 633 (651)
T 3grl_A 575 ENFIEKLGFISKHELYSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSE 633 (651)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHCSCCCCSSGGGTTCCHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHhcCHHHHHHHhCcCccCCCCCceeecHHHHHHHHHHHHHHHHHhcCCcc
Confidence 79999999999999999999999999999999999999999999999999999998754
No 2
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=36.29 E-value=6 Score=20.55 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHH
Q psy15443 36 LDYEFCKLYKALEAQS 51 (73)
Q Consensus 36 ~DheF~kLfK~LE~~i 51 (73)
|--.|-+|||.|..+|
T Consensus 6 frkkfkklfkklspvi 21 (27)
T 2ket_A 6 FRKKFKKLFKKLSPVI 21 (27)
T ss_dssp HHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHhcCccc
Confidence 3446888999887654
No 3
>2la2_A Cecropin, papiliocin; antimicrobial peptide, cecropin-like peptide, AN inflammatory activity, antimicrobial protein; NMR {Papilio xuthus}
Probab=24.66 E-value=37 Score=18.86 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=11.2
Q ss_pred HHHHHHHHH---HHHHHHhh
Q psy15443 42 KLYKALEAQ---SADWIYAK 58 (73)
Q Consensus 42 kLfK~LE~~---i~k~v~~~ 58 (73)
+.||.||++ |-..+.+.
T Consensus 3 ~~FK~iE~vGq~iRd~ii~A 22 (38)
T 2la2_A 3 KIFKKIEKVGRNVRDGIIKA 22 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 689999986 33444443
No 4
>2e7v_A Transmembrane protease; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.92A {Mus musculus}
Probab=20.49 E-value=98 Score=19.94 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q psy15443 38 YEFCKLYKALEAQSADWIYAKA 59 (73)
Q Consensus 38 heF~kLfK~LE~~i~k~v~~~s 59 (73)
++|.-|-+.+|.+|.++++.|+
T Consensus 28 ~~f~~Ls~~ie~m~~~~F~~S~ 49 (121)
T 2e7v_A 28 HEYRTLSERIEAMITDEFRGSS 49 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHcCc
Confidence 6899999999999999988764
No 5
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=14.89 E-value=86 Score=19.83 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=20.4
Q ss_pred hHHHHHHhHHHHH------------HHHHHhhCCCCCCCCCCcchhH
Q psy15443 3 MFLDKLSEVSRHE------------VYSRAAKKPQLDPERAHEPLLD 37 (73)
Q Consensus 3 ~fvekL~~ISkhE------------~ysrAakkPQ~~~~~p~~ll~D 37 (73)
-|++.|..|-+.+ .|.+-..+|.+ ++|+|+
T Consensus 14 Efi~lv~~I~~~~~~~E~e~d~ll~~fe~iteHP~g-----SDLIfy 55 (94)
T 3u43_A 14 EFLEFVKKICRAEGATEEDDNKLVREFERLTEHPDG-----SDLIYY 55 (94)
T ss_dssp HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHCCTTT-----THHHHS
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCCCc-----cCeeee
Confidence 3666777665543 67788888877 577765
No 6
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=14.73 E-value=73 Score=15.86 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHhh
Q psy15443 10 EVSRHEVYSRAAK 22 (73)
Q Consensus 10 ~ISkhE~ysrAak 22 (73)
++||+|....|..
T Consensus 25 g~srS~~ir~ai~ 37 (45)
T 2cpg_A 25 GLSKSAMISVALE 37 (45)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 4688888877764
No 7
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=12.74 E-value=1.7e+02 Score=18.55 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=14.8
Q ss_pred CCCCcchhHHHHHHHHHHHHH
Q psy15443 29 ERAHEPLLDYEFCKLYKALEA 49 (73)
Q Consensus 29 ~~p~~ll~DheF~kLfK~LE~ 49 (73)
+.|.+-+-||- .||||.|++
T Consensus 8 QGPkEPF~dfV-dRl~kal~~ 27 (87)
T 3g1g_A 8 QGPSESFVDFA-NRLIKAVEG 27 (87)
T ss_dssp CCTTCCHHHHH-HHHHHHHHH
T ss_pred cCCCCcHHHHH-HHHHHHHHH
Confidence 45667777775 788888877
No 8
>1ivz_A Hypothetical protein 1110008I14RIK; structural genomics, SEA domain, mucin 16, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.41.1
Probab=10.13 E-value=2.9e+02 Score=18.12 Aligned_cols=22 Identities=5% Similarity=0.119 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q psy15443 38 YEFCKLYKALEAQSADWIYAKA 59 (73)
Q Consensus 38 heF~kLfK~LE~~i~k~v~~~s 59 (73)
.+|..|=+.+|..|.++++.|+
T Consensus 35 ~~~~~l~~~ie~ll~~~F~nSs 56 (132)
T 1ivz_A 35 TKYQQTKRSIENALNQLFRNSS 56 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 4788899999999999998876
No 9
>3ost_A Serine/threonine-protein kinase KCC4; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.69A {Saccharomyces cerevisiae} PDB: 3osm_A
Probab=8.84 E-value=2.3e+02 Score=18.96 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy15443 39 EFCKLYKALEAQSAD 53 (73)
Q Consensus 39 eF~kLfK~LE~~i~k 53 (73)
.|-+|++++|.++-+
T Consensus 108 tf~klv~eiEkVL~k 122 (128)
T 3ost_A 108 TLTKLATEIQIILQK 122 (128)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 588999999988754
No 10
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=8.60 E-value=80 Score=21.39 Aligned_cols=11 Identities=55% Similarity=0.703 Sum_probs=6.6
Q ss_pred HHHH-HHHHHHH
Q psy15443 39 EFCK-LYKALEA 49 (73)
Q Consensus 39 eF~k-LfK~LE~ 49 (73)
|||| |.|.|+|
T Consensus 100 EfckfLAK~l~g 111 (126)
T 1t6a_A 100 EFSKWLAKTLGG 111 (126)
T ss_dssp HHHHHHHHHHCE
T ss_pred HHHHHHHHHhhh
Confidence 6777 4455554
Done!