Query psy15443
Match_columns 73
No_of_seqs 35 out of 37
Neff 3.2
Searched_HMMs 13730
Date Fri Aug 16 21:14:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15443.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/15443hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hqya2 d.108.1.4 (A:1-134) Hy 13.6 24 0.0018 20.7 0.6 11 34-44 25-35 (134)
2 d1t6aa_ d.129.8.1 (A:) Rbstp22 12.8 22 0.0016 22.5 0.2 13 38-50 99-112 (124)
3 d1kska3 d.66.1.5 (A:1-59) Pseu 12.5 31 0.0022 17.7 0.7 16 1-16 3-18 (59)
4 d1d5ya1 a.4.1.8 (A:3-56) Rob t 12.2 50 0.0036 16.1 1.5 13 37-49 33-45 (54)
5 d1b9ma1 a.4.5.8 (A:-1-126) N-t 12.1 44 0.0032 18.8 1.4 19 5-23 23-41 (127)
6 d1vyia_ d.293.1.1 (A:) Phospho 10.4 71 0.0052 19.6 2.0 13 46-58 11-23 (111)
7 d1hdma2 d.19.1.1 (A:13-93) Cla 9.9 62 0.0045 18.9 1.6 14 29-42 53-66 (81)
8 d1we1a_ a.132.1.1 (A:) Heme ox 9.4 1.1E+02 0.0078 18.5 2.7 18 40-57 198-215 (222)
9 d1cqxa1 a.1.1.2 (A:1-150) Flav 9.2 1.5E+02 0.011 16.7 3.3 12 14-25 138-149 (150)
10 d1lqla_ d.227.1.1 (A:) Hypothe 8.3 1.5E+02 0.011 16.7 3.0 24 4-27 108-131 (141)
No 1
>d2hqya2 d.108.1.4 (A:1-134) Hypothetical protein BT3689 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=13.61 E-value=24 Score=20.74 Aligned_cols=11 Identities=27% Similarity=0.332 Sum_probs=8.7
Q ss_pred chhHHHHHHHH
Q psy15443 34 PLLDYEFCKLY 44 (73)
Q Consensus 34 ll~DheF~kLf 44 (73)
..=||.|++||
T Consensus 25 ~~sd~sF~Nl~ 35 (134)
T d2hqya2 25 RNCDLSFSNLC 35 (134)
T ss_dssp CCGGGCHHHHH
T ss_pred cchhhhHHHHH
Confidence 35689999987
No 2
>d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=12.79 E-value=22 Score=22.53 Aligned_cols=13 Identities=46% Similarity=0.603 Sum_probs=8.2
Q ss_pred HHHHH-HHHHHHHH
Q psy15443 38 YEFCK-LYKALEAQ 50 (73)
Q Consensus 38 heF~k-LfK~LE~~ 50 (73)
-|||| |.|.|||.
T Consensus 99 NEfckfLAKkL~ge 112 (124)
T d1t6aa_ 99 NEFSKWLAKTLGGE 112 (124)
T ss_dssp HHHHHHHHHHHCEE
T ss_pred hHHHHHHHHHhhce
Confidence 37887 45666653
No 3
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.54 E-value=31 Score=17.69 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.7
Q ss_pred ChhHHHHHHhHHHHHH
Q psy15443 1 MEMFLDKLSEVSRHEV 16 (73)
Q Consensus 1 ~E~fvekL~~ISkhE~ 16 (73)
|+.|+...+..||.+.
T Consensus 3 Ldk~l~~~~~~SR~~a 18 (59)
T d1kska3 3 LDKFIAQQLGVSRAIA 18 (59)
T ss_dssp HHHHHHHHHTCCHHHH
T ss_pred HHHHHHHcCCCCHHHH
Confidence 4678888888888775
No 4
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.19 E-value=50 Score=16.11 Aligned_cols=13 Identities=8% Similarity=0.521 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHH
Q psy15443 37 DYEFCKLYKALEA 49 (73)
Q Consensus 37 DheF~kLfK~LE~ 49 (73)
...|+|+||..=|
T Consensus 33 ~~~l~r~Fk~~~g 45 (54)
T d1d5ya1 33 KWHLQRMFKDVTG 45 (54)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC
Confidence 4679999997544
No 5
>d1b9ma1 a.4.5.8 (A:-1-126) N-terminal domain of molybdate-dependent transcriptional regulator ModE {Escherichia coli [TaxId: 562]}
Probab=12.14 E-value=44 Score=18.82 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.2
Q ss_pred HHHHHhHHHHHHHHHHhhC
Q psy15443 5 LDKLSEVSRHEVYSRAAKK 23 (73)
Q Consensus 5 vekL~~ISkhE~ysrAakk 23 (73)
++.|..|.++-.|++||+.
T Consensus 23 l~~~~ai~~~gs~~~AA~~ 41 (127)
T d1b9ma1 23 ISLLKHIALSGSISQGAKD 41 (127)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHH
Confidence 5677888888888888874
No 6
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]}
Probab=10.35 E-value=71 Score=19.58 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhh
Q psy15443 46 ALEAQSADWIYAK 58 (73)
Q Consensus 46 ~LE~~i~k~v~~~ 58 (73)
++|+.|+++|..|
T Consensus 11 svEaEiaHQiAES 23 (111)
T d1vyia_ 11 SVEAEIAHQIAES 23 (111)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHH
Confidence 6899999999876
No 7
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=9.93 E-value=62 Score=18.94 Aligned_cols=14 Identities=43% Similarity=0.840 Sum_probs=11.7
Q ss_pred CCCCcchhHHHHHH
Q psy15443 29 ERAHEPLLDYEFCK 42 (73)
Q Consensus 29 ~~p~~ll~DheF~k 42 (73)
.+++++.||-.||+
T Consensus 53 ~q~d~i~fDk~~C~ 66 (81)
T d1hdma2 53 EQGDAILFDKEFCE 66 (81)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred hCchHHHHHHHHHH
Confidence 35668999999997
No 8
>d1we1a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Synechocystis sp. [TaxId: 1143]}
Probab=9.39 E-value=1.1e+02 Score=18.53 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy15443 40 FCKLYKALEAQSADWIYA 57 (73)
Q Consensus 40 F~kLfK~LE~~i~k~v~~ 57 (73)
+.+||++|++.+.+++..
T Consensus 198 ~~~lf~el~~~~~~~~~~ 215 (222)
T d1we1a_ 198 NMKMFNELEGNLIKAIGI 215 (222)
T ss_dssp HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457888888887777654
No 9
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}
Probab=9.20 E-value=1.5e+02 Score=16.73 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=9.5
Q ss_pred HHHHHHHhhCCC
Q psy15443 14 HEVYSRAAKKPQ 25 (73)
Q Consensus 14 hE~ysrAakkPQ 25 (73)
.+.|..++++|-
T Consensus 138 ~~~~~~~~~~~~ 149 (150)
T d1cqxa1 138 SELYERSAEQPG 149 (150)
T ss_dssp HHHHHHHHTSTT
T ss_pred HHHHHHhccCCC
Confidence 466999999885
No 10
>d1lqla_ d.227.1.1 (A:) Hypothetical protein MPN625 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=8.27 E-value=1.5e+02 Score=16.68 Aligned_cols=24 Identities=8% Similarity=-0.104 Sum_probs=17.8
Q ss_pred HHHHHHhHHHHHHHHHHhhCCCCC
Q psy15443 4 FLDKLSEVSRHEVYSRAAKKPQLD 27 (73)
Q Consensus 4 fvekL~~ISkhE~ysrAakkPQ~~ 27 (73)
.-+.+..+.+.|.+.++.+.|.+.
T Consensus 108 ~~~l~~~~~~~CpV~~tL~~~~~v 131 (141)
T d1lqla_ 108 IKEFIDFVSKRCPAHNTLQGVSQL 131 (141)
T ss_dssp HHHHHHHHHHHCHHHHHHHTCSSC
T ss_pred HHHHHHHHHhcCcHHHHhCCCceE
Confidence 344556677889999999988663
Done!