BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15447
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From
Sphingobacterium Multivorum With Substrate L-Serine
Length = 398
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/372 (25%), Positives = 178/372 (47%), Gaps = 22/372 (5%)
Query: 75 VNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDI 134
V I+G + F +++YL + I K A D ++K G G G R GT +H++LE +
Sbjct: 38 VKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKL 97
Query: 135 ASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHN 194
++++G E L+S GF ++ ++ + RND + +DE + +I G S KV + HN
Sbjct: 98 SAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGHN 157
Query: 195 NMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDE 254
NM+ L L + E + K I +G++ DI L ++ S+ +++ A + VD+
Sbjct: 158 NMEDLRAKLSRLPED-------SAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDD 210
Query: 255 SVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGY 314
+ S G +G G G +FG++ ++VD+I+G+ +L S+GGF G + +I+ + +
Sbjct: 211 AHSLGVIGHKGAGTASHFGLN-DDVDLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSV 269
Query: 315 CFSASLPPFXXXXXXXXXXXXXXXPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRDTP 374
FSAS+ P P + KL + + + L H G ++P
Sbjct: 270 MFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHGFD-----LGATESP 324
Query: 375 LKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSHLDQEAKKQKPSIRITCNISHTE 434
+ ++++ ++ K+LQ + + + P+ ++ IR + +HT
Sbjct: 325 ILPIFIRSNEKTFWVTKMLQD-DGVFVNPVVSPAVPA--------EESLIRFSLMATHTY 375
Query: 435 QDMNSLIETLCK 446
++ IE + K
Sbjct: 376 DQIDEAIEKMVK 387
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 8/246 (3%)
Query: 77 INGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIAS 136
ING I T+NY+ +PD+ +D+ G G+ G R GT H E+ +
Sbjct: 41 INGRKTILLGTYNYMGMTFDPDVIAAGKQALDEFGSGTTGSRVLNGTYQGHKACEDALKE 100
Query: 137 FMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNM 196
F G E ++S G+ + I+ + D + +D + + +I G ++ F+HN++
Sbjct: 101 FYGTEHAIVFSTGYQANLGMISTLAGKGDYIILDADSHASIYDGCWLGDAEIVRFRHNSV 160
Query: 197 QHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESV 256
+ L++ L + K +++EGVY DI PL++++++ K+ A I VDE+
Sbjct: 161 EDLDKRLGRLPAE-------AGKLVVLEGVYSMMGDIAPLQEMVAVSKKHGAMILVDEAH 213
Query: 257 SFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCF 316
G G G GV E GV +VD ++G+ ++G+VGGFCV + E RL Y F
Sbjct: 214 GMGFFGEHGRGVFEEAGVEA-DVDFVVGTFSXSVGTVGGFCVSNHPKFEVLRLVCRPYVF 272
Query: 317 SASLPP 322
+ASLPP
Sbjct: 273 TASLPP 278
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 128/246 (52%), Gaps = 8/246 (3%)
Query: 77 INGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIAS 136
I G I T+NY+ +PD+ + ++K G G+CG R GT H+++E +
Sbjct: 61 IRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRD 120
Query: 137 FMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNM 196
F G ++S G+ + I+ + + V +D + + +I G ++ F+HN++
Sbjct: 121 FYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSV 180
Query: 197 QHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESV 256
+ L D+R K K +++EGVY DI PLK+++++ K+ A + VDE+
Sbjct: 181 EDL-------DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 257 SFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCF 316
S G G G GV E G+ ++D ++G+ ++G+VGGF V + E RL+ Y F
Sbjct: 234 SMGFFGPNGRGVYEAQGLEG-QIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIF 292
Query: 317 SASLPP 322
+ASLPP
Sbjct: 293 TASLPP 298
>pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
pdb|3TQX|B Chain B, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase
(Kbl) From Coxiella Burnetii
Length = 399
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 159/364 (43%), Gaps = 22/364 (6%)
Query: 83 INFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEE 142
+NF +NYL ++P + K A +++ G G R GT +H +LE DI+ F+G ++
Sbjct: 46 LNFCANNYLGLADHPALIKTAQTVVEQYGFGXASVRFICGTQTIHKELEKDISEFLGTDD 105
Query: 143 TALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNMQHLEEL 202
T LYS F + + DA+ DE + +I G+ + + +K+N LE
Sbjct: 106 TILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKNNAXGDLEAK 165
Query: 203 LRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTLG 262
L++ DE+ K I +GV+ I LK I L KY A + VD+S + G +G
Sbjct: 166 LKEADEKGA-----RFKLIATDGVFSXDGIIADLKSICDLADKYNALVXVDDSHAVGFIG 220
Query: 263 STGHGVTEYFGVSTEEVDMIIGSLEHALGSV-GGFCVGSSYIIEHHRLSGSGYCFSASLP 321
G G EY GV+ + VD++ G+L ALG GG+ G IIE R Y FS ++
Sbjct: 221 ENGRGTPEYCGVA-DRVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVA 279
Query: 322 P-FXXXXXXXXXXXXXXXPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRDTPLKYLYL 380
P P L +L+E N+ + K+ + + H P+
Sbjct: 280 PVIVATSLKVLELLKTEGPQLRKQLQE--NSRYFRAGXEKLGFQLVPGNHPIIPVX---- 333
Query: 381 QKSDDEVASKKLLQTICDMCIQAGFAITCPSHLDQEAKKQKPSIRITCNISHTEQDMNSL 440
+ +L D +Q G + S+ K IR+ + HT+Q ++
Sbjct: 334 ------LGDAQLATNXADHLLQEGIYVVGFSY--PVVPXGKARIRVQXSAVHTQQQLDRA 385
Query: 441 IETL 444
IE
Sbjct: 386 IEAF 389
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 8/246 (3%)
Query: 77 INGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIAS 136
I G I T+NY+ +PD+ + ++K G G+ G R GT H+++E +
Sbjct: 61 IRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTWGSRMLNGTFHDHMEVEQALRD 120
Query: 137 FMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNM 196
F G ++S G+ + I+ + + V +D + + +I G ++ F+HN++
Sbjct: 121 FYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSV 180
Query: 197 QHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESV 256
+ L D+R K K +++EGVY DI PLK+++++ K+ A + VDE+
Sbjct: 181 EDL-------DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 257 SFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCF 316
S G G G GV E G+ ++D ++G+ ++G+VGGF V + E RL+ Y F
Sbjct: 234 SMGFFGPNGRGVYEAQGLEG-QIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIF 292
Query: 317 SASLPP 322
+ASLPP
Sbjct: 293 TASLPP 298
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 8/246 (3%)
Query: 77 INGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIAS 136
I G I T+NY+ +PD+ + ++K G G+ G R GT H+++E +
Sbjct: 61 IRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTFHDHMEVEQALRD 120
Query: 137 FMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNM 196
F G ++S G+ + I+ + + V +D + + +I G ++ F+HN++
Sbjct: 121 FYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSV 180
Query: 197 QHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESV 256
+ L D+R K K +++EGVY DI PLK+++++ K+ A + VDE+
Sbjct: 181 EDL-------DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 257 SFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCF 316
S G G G GV E G+ ++D ++G+ ++G+VGGF V + E RL+ Y F
Sbjct: 234 SMGFFGPNGRGVYEAQGLEG-QIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIF 292
Query: 317 SASLPP 322
+ASLPP
Sbjct: 293 TASLPP 298
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 8/246 (3%)
Query: 77 INGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIAS 136
I G I T+NY+ +PD+ + ++K G G+ G R GT H+++E +
Sbjct: 62 IRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRD 121
Query: 137 FMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNM 196
F G ++S G+ + I+ + + V +D + + +I G ++ F+HN++
Sbjct: 122 FYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSV 181
Query: 197 QHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESV 256
+ L D+R K K +++EGVY DI PLK+++++ K+ A + VDE+
Sbjct: 182 EDL-------DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 234
Query: 257 SFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCF 316
S G G G GV E G+ ++D ++G+ ++G+VGGF V + E RL+ Y F
Sbjct: 235 SMGFFGPNGRGVYEAQGLEG-QIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIF 293
Query: 317 SASLPP 322
+ASLPP
Sbjct: 294 TASLPP 299
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 129 bits (323), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 8/246 (3%)
Query: 77 INGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIAS 136
I G I T+NY+ +PD+ + ++K G G+ G R GT H+++E +
Sbjct: 61 IRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRD 120
Query: 137 FMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNM 196
F G ++S G+ + I+ + + V +D + + +I G ++ F+HN++
Sbjct: 121 FYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSV 180
Query: 197 QHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESV 256
+ L D+R K K +++EGVY DI PLK+++++ K+ A + VDE+
Sbjct: 181 EDL-------DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 257 SFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCF 316
S G G G GV E G+ ++D ++G+ ++G+VGGF V + E RL+ Y F
Sbjct: 234 SMGFFGPNGRGVYEAQGLEG-QIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIF 292
Query: 317 SASLPP 322
+ASLPP
Sbjct: 293 TASLPP 298
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 8/246 (3%)
Query: 77 INGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIAS 136
I G I T+NY+ +PD+ + ++K G G+ G R GT H+++E +
Sbjct: 61 IRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTYGSRMLNGTFHDHMEVEQALRD 120
Query: 137 FMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNM 196
F G ++S G+ + I+ + + V +D + + +I G ++ F+HN++
Sbjct: 121 FYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSV 180
Query: 197 QHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESV 256
+ L D+R K K +++EGVY DI PLK+++++ K+ A + VDE+
Sbjct: 181 EDL-------DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 233
Query: 257 SFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCF 316
S G G G GV E G+ ++D ++G+ ++G+VGGF V + E RL+ Y F
Sbjct: 234 SMGFFGPNGRGVYEAQGLEG-QIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIF 292
Query: 317 SASLPP 322
+ASLPP
Sbjct: 293 TASLPP 298
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 8/246 (3%)
Query: 77 INGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIAS 136
I G I T+NY+ +PD+ + ++K G G+ G R GT H+++E +
Sbjct: 62 IRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTNGSRMLNGTFHDHMEVEQALRD 121
Query: 137 FMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNM 196
F G ++S G+ + I+ + + V +D + + +I G ++ F+HN++
Sbjct: 122 FYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSV 181
Query: 197 QHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESV 256
+ L D+R K K +++EGVY DI PLK+++++ K+ A + VDE+
Sbjct: 182 EDL-------DKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAH 234
Query: 257 SFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCF 316
S G G G GV E G+ ++D ++G+ ++G+VGGF V + E RL+ Y F
Sbjct: 235 SMGFFGPNGRGVYEAQGLEG-QIDFVVGTFSXSVGTVGGFVVSNHPKFEAVRLACRPYIF 293
Query: 317 SASLPP 322
+ASLPP
Sbjct: 294 TASLPP 299
>pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase
pdb|1FC4|B Chain B, 2-Amino-3-Ketobutyrate Coa Ligase
Length = 401
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/250 (31%), Positives = 113/250 (45%), Gaps = 7/250 (2%)
Query: 74 IVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLEND 133
I +G INF +NYL +PD+ A D +G G R GT H +LE
Sbjct: 39 ITVADGSHVINFCANNYLGLANHPDLIAAAKAGXDSHGFGXASVRFICGTQDSHKELEQK 98
Query: 134 IASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKH 193
+A+F+G E+ LYS F + + DA+ D + +I G+ + K + +
Sbjct: 99 LAAFLGXEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN 158
Query: 194 NNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVD 253
N+ Q LE L++ E + I +GV+ I LK + L KY A + VD
Sbjct: 159 NDXQELEARLKEARE-----AGARHVLIATDGVFSXDGVIANLKGVCDLADKYDALVXVD 213
Query: 254 ESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSV-GGFCVGSSYIIEHHRLSGS 312
+S + G +G G G EY V VD+I G+L ALG GG+ ++E R
Sbjct: 214 DSHAVGFVGENGRGSHEYCDVXG-RVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSR 272
Query: 313 GYCFSASLPP 322
Y FS SL P
Sbjct: 273 PYLFSNSLAP 282
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 10/236 (4%)
Query: 89 NYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEETALYSF 148
+YL ++P + + ++ G GS G R GT H LE +IA E ++S
Sbjct: 55 DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSS 114
Query: 149 GFSTSASAIAAY-VKRNDAVFVDENINFA-IQTGLIASRCKVQYFKHNNMQHLEELLRQQ 206
++ + + ++ V + +++N A + G+ + + F+HN++ HL EL+
Sbjct: 115 AYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAAD 174
Query: 207 DERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTLGSTGH 266
D K I E VY D P+K+I + ++ A ++DE + G G G
Sbjct: 175 D-------PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGA 227
Query: 267 GVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPP 322
GV E G+ +D+ G+L A G GG+ S+ +++ R G+ FS SLPP
Sbjct: 228 GVAERDGL-MHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPP 282
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 10/236 (4%)
Query: 89 NYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEETALYSF 148
+YL ++P + + ++ G GS G R GT H LE +IA E ++S
Sbjct: 55 DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSS 114
Query: 149 GFSTSASAIAAY-VKRNDAVFVDENINFA-IQTGLIASRCKVQYFKHNNMQHLEELLRQQ 206
++ + + ++ V + +++N A + G+ + + F+HN++ HL EL+
Sbjct: 115 AYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHNDVAHLRELIAAD 174
Query: 207 DERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTLGSTGH 266
D K I E VY D P+K+I + ++ A ++DE + G G G
Sbjct: 175 D-------PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGA 227
Query: 267 GVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPP 322
GV E G+ +D+ G+L A G GG+ S+ +++ R G+ FS SLPP
Sbjct: 228 GVAERDGL-MHRIDIFNGTLAXAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPP 282
>pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase
(biof) From Francisella Tularensis
Length = 399
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 15/240 (6%)
Query: 83 INFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEE 142
I+F T +YL+ +++ ++ DK G GS G G E++ A F+
Sbjct: 54 IDFTTSDYLNLSSAHNLKHAIVNGFDKYGFGSKGSNIVCGYTDETQQFEHEFAKFINYPR 113
Query: 143 TALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNMQHLEEL 202
+S GF + + + ++D++F D+ I+ +I G+ S+ K++ +KH + L+++
Sbjct: 114 AIFFSSGFMANLAIYSTLFSKHDSIFADKYIHASIIDGIKLSQAKLRRYKHQQLSQLQDI 173
Query: 203 LRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTLG 262
K FI EGV+ S I L + + + ++ VDE+ SFG LG
Sbjct: 174 YD------------GKSFITTEGVFSTSGSITQLDKLAKITPE---KLIVDEAHSFGVLG 218
Query: 263 STGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPP 322
G G F +S + + + L A G VG + I E+ Y ++ +LPP
Sbjct: 219 KNGRGAINSFRISYKNCLICVFPLGKAFGGVGAVVCTTEAIAEYLIQFARNYIYTTALPP 278
>pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase
pdb|2G6W|A Chain A, Suicide Inhibition Of A-Oxamine Synthase: Structures Of
The Covalent Adducts Of 8-Amino-7-Oxonanoate Synthase
With Trifluoroalanine
Length = 384
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/389 (21%), Positives = 160/389 (41%), Gaps = 41/389 (10%)
Query: 65 YVVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTN 124
Y V Q +G + + +NF++++YL +P I + ++ G+GS G G +
Sbjct: 24 YPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYS 83
Query: 125 VVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIAS 184
VVH LE ++A ++G L+ GF+ + + IAA + + D + D + ++ S
Sbjct: 84 VVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLS 143
Query: 185 RCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRS 244
+++ F HN++ HL LL + ++ ++ EGV+ D PL +I +
Sbjct: 144 PSQLRRFAHNDVTHLARLL--------ASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQ 195
Query: 245 KYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYII 304
++ + VD++ G +G G G V E +++ + G G + SS +
Sbjct: 196 QHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE---LLVVTFGKGFGVSGAAVLCSSTVA 252
Query: 305 EHHRLSGSGYCFSASLPPFXXXXXXXXX---------XXXXXXPSLLTKLREKCNTMHSL 355
++ +S S+PP +L+T+ R +
Sbjct: 253 DYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFT 312
Query: 356 LSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSHLDQ 415
L+ + L+ G L+ ++KL Q C + AI P+
Sbjct: 313 LADSCSAIQPLIVGDNSRALQL-----------AEKLRQQGCWVT-----AIRPPTVPAG 356
Query: 416 EAKKQKPSIRITCNISHTEQDMNSLIETL 444
A+ +R+T +H QD++ L+E L
Sbjct: 357 TAR-----LRLTLTAAHEMQDIDRLLEVL 380
>pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or
7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed
With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or
Kapa). The Enzyme Of Biotin Biosynthetic Pathway.
pdb|1DJE|A Chain A, Crystal Structure Of The Plp-Bound Form Of
8-Amino-7-Oxonanoate Synthase
Length = 384
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 119/259 (45%), Gaps = 11/259 (4%)
Query: 64 KYVVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGT 123
+Y V Q +G + + +NF++++YL +P I + ++ G+GS G G
Sbjct: 23 RYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGY 82
Query: 124 NVVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIA 183
+VVH LE ++A ++G L+ GF+ + + IAA + + D + D + ++
Sbjct: 83 SVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASL 142
Query: 184 SRCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLR 243
S +++ F HN++ HL LL + ++ ++ EGV+ D PL +I +
Sbjct: 143 SPSQLRRFAHNDVTHLARLL--------ASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVT 194
Query: 244 SKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYI 303
++ + VD++ G +G G G V E +++ + G G + SS +
Sbjct: 195 QQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE---LLVVTFGKGFGVSGAAVLCSSTV 251
Query: 304 IEHHRLSGSGYCFSASLPP 322
++ +S S+PP
Sbjct: 252 ADYLLQFARHLIYSTSMPP 270
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 130 LENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQ 189
+E +A F G +E L G++ + + + N V++D + ++ G + +
Sbjct: 109 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAH 168
Query: 190 YFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQAR 249
F HNN HL L+++ I+V+ +Y I PL +++++ ++
Sbjct: 169 PFMHNNCDHLRMLIQRHG----------PGIIVVDSIYSTLGTIAPLAELVNISKEFGCA 218
Query: 250 IFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGG 295
+ VDES S GT G G G+ G+ T EV + SL G
Sbjct: 219 LLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAG 263
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 130 LENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQ 189
+E +A F G +E L G++ + + + N V++D + ++ G + +
Sbjct: 89 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAH 148
Query: 190 YFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQAR 249
F HNN HL L+++ I+V+ +Y I PL +++++ ++
Sbjct: 149 PFMHNNCDHLRMLIQRHG----------PGIIVVDSIYSTLGTIAPLAELVNISKEFGCA 198
Query: 250 IFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGG 295
+ VDES S GT G G G+ G+ T EV + SL G
Sbjct: 199 LLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAG 243
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 11/166 (6%)
Query: 130 LENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQ 189
+E +A F G +E L G++ + + + N V++D + ++ G + +
Sbjct: 89 IEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAH 148
Query: 190 YFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQAR 249
F HNN HL L+++ I+V+ +Y I PL +++++ ++
Sbjct: 149 PFMHNNCDHLRMLIQRHG----------PGIIVVDSIYSTLGTIAPLAELVNISKEFGCA 198
Query: 250 IFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGG 295
+ VDES S GT G G G+ G+ T EV + SL G
Sbjct: 199 LLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAG 243
>pdb|1YCF|A Chain A, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCF|B Chain B, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCF|C Chain C, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCF|D Chain D, Oxidized (Di-Ferric) Fpra From Moorella Thermoacetica
pdb|1YCG|A Chain A, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCG|B Chain B, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCG|C Chain C, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCG|D Chain D, X-Ray Structures Of Moorella Thermoacetica Fpra. Novel
Diiron Site Structure And Mechanistic Insights Into A
Scavenging Nitric Oxide Reductase
pdb|1YCH|A Chain A, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
pdb|1YCH|B Chain B, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
pdb|1YCH|C Chain C, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
pdb|1YCH|D Chain D, X-Ray Crystal Structures Of Moorella Thermoacetica Fpra.
Novel Diiron Site Structure And Mechanistic Insights
Into A Scavenging Nitric Oxide Reductase
Length = 398
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 28/132 (21%)
Query: 140 LEETALYSFGFSTSASAIAAYVKRNDAVFVD-ENINFAIQTGLIASRCKVQYFKHNNMQH 198
+E A ++ G A A+ AY D +++ E + A+ GL+A C+V+ FK
Sbjct: 239 IEAYARWAEG-QGKAKAVIAY----DTMWLSTEKMAHALMDGLVAGGCEVKLFK------ 287
Query: 199 LEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICP-----LKDILSLRSKYQARIFVD 253
L D D + + + ++V +N+ DI P L D++ LR K +
Sbjct: 288 ----LSVSDRNDVIKEILDARAVLVGSPTINN-DILPVVSPLLDDLVGLRPKNKV----- 337
Query: 254 ESVSFGTLGSTG 265
++FG G G
Sbjct: 338 -GLAFGAYGWGG 348
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
Query: 85 FATHNYLSFVENPDIEKCAIDCIDKN-GVGSCGPRGFYGTNVVHLDLENDIASFMGLEET 143
+ HN +F++ P +++ I +DK S G + N++ + IA+ +G+ +
Sbjct: 11 YLDHNATTFID-PRVKEFIISLMDKELNPSSAHSSGRFAKNLIE-TVRAQIATALGITLS 68
Query: 144 AL-YSFGFSTSASAIAAYVKRN---DAVFVD--------ENINFAIQTGLIASRCKVQYF 191
+ Y F++S + + +N +F+ +IN+A +I+ +
Sbjct: 69 SREYDITFTSSGTEGNNLIMKNFYDGDIFISAIEHLSIYNHINYAPNIKVISVNTQGLV- 127
Query: 192 KHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIF 251
+++HLEELL Q S +KK + + S + + +I + KY+A+
Sbjct: 128 ---DLEHLEELLAQ--------SNTSKKLVSIIMANNESGVLQDIAEIGKITKKYEAKFH 176
Query: 252 VDESVSFGTL 261
D FG +
Sbjct: 177 SDLVQGFGRI 186
>pdb|3D18|A Chain A, Crystal Structure Of Hla-B2709 Complexed With A Variant Of
The Latent Membrane Protein 2 Peptide (Lmp2(L)) Of
Epstein-Barr Virus
Length = 276
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 348 KCNTMHSLLSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQT--ICDMCIQAGF 405
K + H +S H+ T R G + + + +DE +L++T D Q
Sbjct: 186 KTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDETQDTELVETRPAGDRTFQKWA 245
Query: 406 AITCPSHLDQEAKKQKPSIRITCNISH 432
A+ PS +Q R TC++ H
Sbjct: 246 AVVVPSGEEQ---------RYTCHVQH 263
>pdb|2VYC|A Chain A, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|B Chain B, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|C Chain C, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|D Chain D, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|E Chain E, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|F Chain F, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|G Chain G, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|H Chain H, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|I Chain I, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|J Chain J, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
Length = 755
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 120 FYGTNVVHLD----------LENDIASFMGLEETALYSFGFSTSASAIA----------- 158
+YG N+ D L + +F E+ A FG S S +
Sbjct: 180 YYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQ 239
Query: 159 AYVKRNDAVFVDENINFAIQTGLIASRCKVQYF--KHNNMQHLEELLRQQDERDTLNSKV 216
A + ND V VD N + +I+ GL+ + K Y N + + Q+ + +TL K+
Sbjct: 240 ACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKI 299
Query: 217 TK 218
++
Sbjct: 300 SE 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,589,548
Number of Sequences: 62578
Number of extensions: 502065
Number of successful extensions: 1591
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1529
Number of HSP's gapped (non-prelim): 31
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)