RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15447
(457 letters)
>gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase.
Length = 481
Score = 371 bits (954), Expect = e-125
Identities = 168/443 (37%), Positives = 258/443 (58%), Gaps = 25/443 (5%)
Query: 14 GLFLPLTLFIVLSLSLSKHKKHTIN--VDALINNWTPEPI---VSKAEKFKDVSSKYVVD 68
GL + + +F++ S K+ +D L + WTPEP+ +++ + + V++
Sbjct: 42 GLLIVVIVFLLSQKSYKPPKRPLTEKEIDELCDEWTPEPLIPPITEEMRPE----PPVLE 97
Query: 69 QKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHL 128
+G ING +NFA+ NYL + N I++ ++K GVGSCGPRGFYGT VHL
Sbjct: 98 SAAGPHTIINGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHL 157
Query: 129 DLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKV 188
D E IA F+G ++ LYS+G ST S I A+ K+ D + DE +++ IQ GL SR +
Sbjct: 158 DCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTI 217
Query: 189 QYFKHNNMQHLE---ELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSK 245
YFKHN+M+ L E L +++R K +++I+VE +Y NS I PL +I+ L+ K
Sbjct: 218 VYFKHNDMESLRNTLEKLTAENKR----KKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEK 273
Query: 246 YQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIE 305
Y+ R+ +DES SFG LG +G G++E+FGV E++D+I ++ HAL + GGFC GS+ +++
Sbjct: 274 YRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVD 333
Query: 306 HHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRF 365
H RLS SGY FSASLPP+LA AA A+ +L+ NPS+L KL+E +H LS
Sbjct: 334 HQRLSSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSD---IPGL 390
Query: 366 LVQGHRDTPLKYLYLQKSDDEVASK-KLLQTICDMCIQAG---FAITCPSHLDQEAKKQK 421
+ + +P+ +L+L+KS LL+ I D ++ ++ S LD+ +
Sbjct: 391 SIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDK--CRLP 448
Query: 422 PSIRITCNISHTEQDMNSLIETL 444
IR+ + HTE D+ E+L
Sbjct: 449 VGIRLFVSAGHTESDILKASESL 471
>gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein;
Provisional.
Length = 392
Score = 297 bits (762), Expect = 2e-97
Identities = 139/390 (35%), Positives = 218/390 (55%), Gaps = 32/390 (8%)
Query: 83 INFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEE 142
+NFATH++LS +P + + A++ + G GSCGPRGFYGT HL+LE +A F+G E
Sbjct: 1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTES 60
Query: 143 TALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNMQHLEEL 202
LYS G ST++S +AA+ KR D + VD +N A+ G+ SR V++F+HN+M+ L +
Sbjct: 61 AILYSDGASTTSSTVAAFAKRGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRRV 120
Query: 203 LRQQDERDT---LNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFG 259
L Q +D ++F++VEG+Y N+ + PLK++++L+ ++ R+ +DES SFG
Sbjct: 121 LEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFG 180
Query: 260 TLGSTGHGVTEYFGVS-TEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSA 318
TLG +G G E+ G+ +++ SLE+A GSVGG VGS +++H RLSGSGYCFSA
Sbjct: 181 TLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSA 240
Query: 319 SLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQH------KVTQRFLVQGHRD 372
S PPFLA A A A P LL +L + ++S L+ K+ R ++
Sbjct: 241 SAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPI 300
Query: 373 TPLKYLYLQKSDDEVASKKLLQTI-------------CDMCIQAGFAITCPSHLDQEAKK 419
+P+ YL L D+ A+++ +T+ + G
Sbjct: 301 SPIIYLRLS---DQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQL------V 351
Query: 420 QKPSIRITCNISHTEQDMNSLIETLCKSHD 449
P +R+ N SHT +D++ L+ L ++ +
Sbjct: 352 PPPCLRVVANASHTREDIDKLLTVLGEAVE 381
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 291 bits (746), Expect = 7e-95
Identities = 122/382 (31%), Positives = 205/382 (53%), Gaps = 25/382 (6%)
Query: 66 VVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNV 125
+D++ G + +G +NF +++YL +P++ + A I + GVG+ G R GT+
Sbjct: 25 ALDRRQGLAIRADGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSD 84
Query: 126 VHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASR 185
+H++LE ++A F+G E L+S GF + ++A +K+ D +F DE + +I G+ SR
Sbjct: 85 LHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSR 144
Query: 186 CKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSK 245
+V+ FKHN++ HLE LL + + +K I+ EGV+ DI PL +++ L K
Sbjct: 145 AEVRRFKHNDLDHLEALLEEAR-----ENGARRKLIVTEGVFSMDGDIAPLPELVELAEK 199
Query: 246 YQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIE 305
Y A ++VDE+ + G LG G G+ E+FG+ EEVD+I+G+L ALGS GG+ GS+ +I+
Sbjct: 200 YGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALID 259
Query: 306 HHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRF 365
+ R + FS +LPP +A AA AL +L+ P +L+E SLL
Sbjct: 260 YLRNRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLK-----ALG 314
Query: 366 LVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITC---PSHLDQEAKKQKP 422
LV ++P+ + + ++ ++ G ++ P+ K
Sbjct: 315 LVLLPSESPIIPV-------ILGDEERALEASRALLEEGIYVSAIRPPTV-----PKGTA 362
Query: 423 SIRITCNISHTEQDMNSLIETL 444
+RIT +HTE+D++ L E L
Sbjct: 363 RLRITLTAAHTEEDIDRLAEAL 384
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 247 bits (633), Expect = 2e-78
Identities = 118/372 (31%), Positives = 190/372 (51%), Gaps = 36/372 (9%)
Query: 81 PCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGL 140
+NF +++YL +P++ + A + +DK GVG+ G R GT+ +H +LE ++A F G
Sbjct: 2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGK 61
Query: 141 EETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNMQHLE 200
E ++S G++ + ++ + D + D + +I G+ S K + FKHN+M+ LE
Sbjct: 62 EAALVFSSGYAANDGVLSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLE 121
Query: 201 ELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGT 260
+LLR+ KK I+ EGVY DI PL +++ L KY A +FVDE+ S G
Sbjct: 122 KLLREARR------PYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVGV 175
Query: 261 LGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASL 320
G G GV E FG T++VD+I+G+L A G+VGG+ GS +I++ R G+ FS SL
Sbjct: 176 YGPHGRGV-EEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIFSTSL 234
Query: 321 PPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQR--FLVQGHRDTPLKYL 378
PP +A AA AL +L+ P +L+E + L + F V G + L
Sbjct: 235 PPAVAAAALAALEVLQGGPERRERLQENVRYLRRGL------KELGFPVGGSPSHIIPPL 288
Query: 379 YLQKSDDEVASKKLLQTICDMCIQAGFAI------TCPSHLDQEAKKQKPSIRITCNISH 432
DD + D ++ G + T P + +RI+ + +H
Sbjct: 289 IG---DDPAKAVAF----SDALLERGIYVQAIRYPTVP--------RGTARLRISLSAAH 333
Query: 433 TEQDMNSLIETL 444
T++D++ L+E L
Sbjct: 334 TKEDIDRLLEAL 345
>gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase.
7-keto-8-aminopelargonic acid synthetase is an alternate
name. This model represents 8-amino-7-oxononanoate
synthase, the BioF protein of biotin biosynthesis. This
model is based on a careful phylogenetic analysis to
separate members of this family from
2-amino-3-ketobutyrate and other related pyridoxal
phosphate-dependent enzymes. In several species,
including Staphylococcus and Coxiella, a candidate
8-amino-7-oxononanoate synthase is confirmed by location
in the midst of a biotin biosynthesis operon but scores
below the trusted cutoff of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 360
Score = 196 bits (501), Expect = 9e-59
Identities = 107/383 (27%), Positives = 186/383 (48%), Gaps = 31/383 (8%)
Query: 67 VDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVV 126
+D+ G V +G +NF++++YL +P++ + A ++ G GS R G + +
Sbjct: 3 LDRGPGPEVVRDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPL 62
Query: 127 HLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFA-IQTGLIASR 185
H +LE ++A + G E L+S G+ + I+A V + D + D +N A + G S
Sbjct: 63 HEELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDA-LNHASLIDGCRLSG 121
Query: 186 CKVQYFKHNNMQHLEELLRQ-QDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRS 244
+V+ ++HN+++HLE LL + + ER +K I+ +GV+ DI PL +++L
Sbjct: 122 ARVRRYRHNDVEHLERLLEKNRGER--------RKLIVTDGVFSMDGDIAPLPQLVALAE 173
Query: 245 KYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYII 304
+Y A + VD++ G LG G G E+FG+ E VD+ +G+L ALGS G + GS +I
Sbjct: 174 RYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALI 233
Query: 305 EHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQR 364
++ FS +LPP +A AA AL L++ P KL + +
Sbjct: 234 DYLINRARTLIFSTALPPAVAAAALAALELIQEEPWRREKLLA-----LIARLRAGLEAL 288
Query: 365 FLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITC---PSHLDQEAKKQK 421
TP+ + + + +A + LQ Q G + P+ ++
Sbjct: 289 GFTLMPSCTPIVPVIIGDNASALALAEELQ-------QQGIFVGAIRPPTVPAGTSR--- 338
Query: 422 PSIRITCNISHTEQDMNSLIETL 444
+R+T + +HT D++ L E L
Sbjct: 339 --LRLTLSAAHTPGDIDRLAEAL 359
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 189 bits (482), Expect = 1e-55
Identities = 96/384 (25%), Positives = 177/384 (46%), Gaps = 32/384 (8%)
Query: 66 VVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNV 125
+ +G + ++G +NFA+++YL +P + A + G GS G R G +
Sbjct: 25 PREGGAGRWLVVDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSP 84
Query: 126 VHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASR 185
H LE ++A + G E L+S G++ + + + A + D + D+ + ++ G SR
Sbjct: 85 AHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSR 144
Query: 186 CKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSAD--ICPLKDILSLR 243
+V+ + HN++ LE LL + L I+ E V+ S D + PL ++++L
Sbjct: 145 ARVRRYPHNDVDALEALLAKWRAGRAL--------IVTESVF--SMDGDLAPLAELVALA 194
Query: 244 SKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYI 303
++ A + VDE+ G LG G G+ G++ E +++G+L ALGS G +GS +
Sbjct: 195 RRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETL 254
Query: 304 IEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQ 363
I++ + F+ +LPP A AA AL +L+ P +L + +
Sbjct: 255 IDYLINRARPFIFTTALPPAQAAAARAALRILRREPERRERLAA-----LIARLRAGLRA 309
Query: 364 RFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITC---PSHLDQEAKKQ 420
+ ++ L + ++ +A LQ + GF + P+ ++
Sbjct: 310 LGFQLMDSQSAIQPLIVGDNERALALAAALQ-------EQGFWVGAIRPPTVPAGTSR-- 360
Query: 421 KPSIRITCNISHTEQDMNSLIETL 444
+RIT +HTE D++ L+E L
Sbjct: 361 ---LRITLTAAHTEADIDRLLEAL 381
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 173 bits (440), Expect = 2e-49
Identities = 90/267 (33%), Positives = 134/267 (50%), Gaps = 9/267 (3%)
Query: 83 INFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEE 142
INF +NYL +P++ A +D +G G R GT +H +LE +A F+G E+
Sbjct: 45 INFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTED 104
Query: 143 TALYSFGFSTSASAIAAYVKRNDAVFVDENINFA-IQTGLIASRCKVQYFKHNNMQHLEE 201
LYS F + + + DA+ D +N A I G+ + K + +N+M LE
Sbjct: 105 AILYSSCFDANGGLFETLLGKEDAIISDA-LNHASIIDGVRLCKAKRYRYANNDMADLEA 163
Query: 202 LLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTL 261
L++ E + K I +GV+ DI PL +I L KY A + VD+S + G +
Sbjct: 164 QLKEAKE-----AGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFV 218
Query: 262 GSTGHGVTEYFGVSTEEVDMIIGSLEHAL-GSVGGFCVGSSYIIEHHRLSGSGYCFSASL 320
G G G E+FGV + VD+I G+L AL G+ GG+ G +I+ R Y FS SL
Sbjct: 219 GENGRGTVEHFGVM-DRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNSL 277
Query: 321 PPFLAVAANKALHLLKANPSLLTKLRE 347
P + A+ K L LL+ + L +L E
Sbjct: 278 APAIVAASIKVLELLEESDELRDRLWE 304
>gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase.
Length = 489
Score = 171 bits (435), Expect = 5e-48
Identities = 92/341 (26%), Positives = 165/341 (48%), Gaps = 25/341 (7%)
Query: 50 PIVSKAEKFKDVSSKYVVDQKSGYIVNINGIP-CINFATHNYLSFVENPDIEKCA---ID 105
PI S + + DV + + + + C+N ++NYL F E C I+
Sbjct: 70 PIASAPDAWFDVVERVS-NDNNKTLKRTTKTRRCLNLGSYNYLGFAAAD--EYCTPRVIE 126
Query: 106 CIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRND 165
+ K +C R GT +H +LE +A F+G ++ G++T+++ I A + +
Sbjct: 127 SLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALIGKGG 186
Query: 166 AVFVDENINFAIQTGLIASRCKVQYFKHNNMQHLEELLRQQ--DERDTLNSKVTKKFIIV 223
+ D + +I G S ++ F+HN HLEE+LR+Q + + + K +IV
Sbjct: 187 LIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIV 246
Query: 224 EGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMII 283
EG+Y ++C L +I+++ KY+A +++DE+ S G +G TG GV E GV +VD+++
Sbjct: 247 EGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMM 306
Query: 284 GSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPPFLAVAANKALHLLKA------ 337
G+ + GS GG+ GS +I++ + + + ++ S+ P A + + +K
Sbjct: 307 GTFTKSFGSCGGYIAGSKELIQYLKRTCPAHLYATSMSP---PAVQQVISAIKVILGEDG 363
Query: 338 ---NPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRDTPL 375
L ++RE N S L F V G D+P+
Sbjct: 364 TNRGAQKLAQIRENSNFFRSEL----QKMGFEVLGDNDSPV 400
>gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent
acyltransferase, putative. This model represents an
enzyme subfamily related to three known enzymes; it
appears closest to glycine C-acteyltransferase, shows no
overlap with it in species distribution, and may share
that function. The three closely related enzymes are
glycine C-acetyltransferase (2-amino-3-ketobutyrate
coenzyme A ligase), 5-aminolevulinic acid synthase, and
8-amino-7-oxononanoate synthase. All transfer the
R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from
coenzyme A to an amino acid (Gly, Gly, Ala,
respectively), with release of CO2 for the latter two
reactions.
Length = 385
Score = 168 bits (427), Expect = 9e-48
Identities = 86/280 (30%), Positives = 152/280 (54%), Gaps = 8/280 (2%)
Query: 66 VVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNV 125
V++ G V +NG IN +++NYL F ++P +++ A I + GVG+ R GT
Sbjct: 19 VLESAQGPRVRVNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLR 78
Query: 126 VHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASR 185
+H +LE +A F E ++ GF+T+ ++A +++ D V DE + +I GL ++
Sbjct: 79 LHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTK 138
Query: 186 CKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSK 245
+ +KH +M L+ +LR+ N KK I+ +GV+ D+ PL +I+ L +
Sbjct: 139 ATKKIYKHADMDDLDRVLRE-------NPSYGKKLIVTDGVFSMDGDVAPLPEIVELAER 191
Query: 246 YQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIE 305
Y A +VD++ G +G G G +FG+ ++VD+ +G+L A+G VGG+ G +IE
Sbjct: 192 YGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVGGYAAGHKELIE 250
Query: 306 HHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKL 345
+ + + FS + PP + A A+ L+ +P L+ +L
Sbjct: 251 YLKNRARPFLFSTAQPPAVVAALAAAVDELQRSPELMERL 290
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 158 bits (401), Expect = 6e-44
Identities = 100/367 (27%), Positives = 170/367 (46%), Gaps = 31/367 (8%)
Query: 82 CINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLE 141
C N +YL ++P++ + + +DK G G+ G R GTN+ H++LE ++A G E
Sbjct: 51 CSN----DYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKE 106
Query: 142 ETALYSFGFSTSASAIAAYVKR--NDAVFVDE-NINFAIQTGLIASRCKVQYFKHNNMQH 198
+++ G+ + + +A K +F DE N I+ G+ S + F+HN++ H
Sbjct: 107 SALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIE-GIRHSGAEKFIFRHNDVAH 165
Query: 199 LEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSF 258
LE+LL+ D K I E VY DI P+++I L KY A ++DE +
Sbjct: 166 LEKLLQSVDPN-------RPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAV 218
Query: 259 GTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSA 318
G G G G+ E G+ +D+I G+L A G VGG+ S +I+ R G+ F+
Sbjct: 219 GLYGPRGGGIAERDGLM-HRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIFTT 277
Query: 319 SLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRDTPLKYL 378
SLPP +A A ++ LK + L +E + +LL + P +
Sbjct: 278 SLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALGIP-------VIPNPSHIV 330
Query: 379 YLQKSDDEVASKKLLQTICDMCIQAGFAITC-PSHLDQEAKKQKPSIRITCNISHTEQDM 437
+ D + K + D+ + I P + + + +RIT +HT++ +
Sbjct: 331 PVIIGDAALCKK-----VSDLLL-NKHGIYVQPINYPTVPRGTE-RLRITPTPAHTDKMI 383
Query: 438 NSLIETL 444
+ L+E L
Sbjct: 384 DDLVEAL 390
>gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase.
This model represents a narrowly defined clade of animal
and bacterial (almost exclusively Proteobacterial)
2-amino-3-ketobutyrate--CoA ligase. This enzyme can act
in threonine catabolism. The closest homolog from
Bacillus subtilis, and sequences like it, may be
functionally equivalent but were not included in the
model because of difficulty in finding reports of
function [Energy metabolism, Amino acids and amines].
Length = 393
Score = 156 bits (397), Expect = 2e-43
Identities = 91/290 (31%), Positives = 139/290 (47%), Gaps = 7/290 (2%)
Query: 62 SSKYVVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFY 121
S + + + I +G +NF +NYL +PD+ + A D +D++G G R
Sbjct: 20 SERIITSPQGADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFIC 79
Query: 122 GTNVVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGL 181
GT +H +LE IA+F+G E+T LY+ F + + DA+ D + +I G+
Sbjct: 80 GTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGV 139
Query: 182 IASRCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILS 241
+ K + +N+M LE L++ + + I +GV+ I PL +I
Sbjct: 140 RLCKAKRYRYANNDMADLEAQLKEARA-----AGARHRLIATDGVFSMDGVIAPLDEICD 194
Query: 242 LRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHAL-GSVGGFCVGS 300
L KY A + VDE + G LG TG G E GV VD+I G+L AL G+ GGF
Sbjct: 195 LADKYDALVMVDECHATGFLGPTGRGSHELCGV-MGRVDIITGTLGKALGGASGGFTTAR 253
Query: 301 SYIIEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCN 350
++E R Y FS SLPP + A+ K L +L+A+ L +L
Sbjct: 254 KEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEASNELRDRLWANTR 303
>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
Length = 407
Score = 156 bits (398), Expect = 3e-43
Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 18/281 (6%)
Query: 82 CINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLE 141
C N +YL ++P + + I+ +D+ G G+ G R GTN H++LE ++A G E
Sbjct: 52 CSN----DYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKE 107
Query: 142 ETALYSFGFS---TSASAIAAYVKRNDAVFVDE-NINFAIQTGLIASRCKVQYFKHNNMQ 197
+++ G+ + S +A + + +F DE N I+ G+ SRC+ F+HN++
Sbjct: 108 AALVFTSGYVSNDATLSTLAKLI-PDCVIFSDELNHASMIE-GIRRSRCEKHIFRHNDVA 165
Query: 198 HLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVS 257
HLEELL D K I E VY DI P+ +I L KY A ++DE +
Sbjct: 166 HLEELLAAADPD-------RPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHA 218
Query: 258 FGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFS 317
G G G G+ E G+ + +D+I G+L A G +GG+ GS+ +++ R G+ F+
Sbjct: 219 VGMYGPRGGGIAERDGLM-DRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFT 277
Query: 318 ASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQ 358
SLPP +A AA ++ LK + + +E+ + + L
Sbjct: 278 TSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDA 318
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 138 bits (350), Expect = 1e-36
Identities = 77/252 (30%), Positives = 129/252 (51%), Gaps = 10/252 (3%)
Query: 87 THNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEETALY 146
+++YL ++PD+ +D +D+ G G+ G R GT+ H+ LE ++A G E L+
Sbjct: 53 SNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLF 112
Query: 147 SFGFSTSASAIAAYVKR--NDAVFVDENINFAIQTGLIASRCKVQYFKHNNMQHLEELLR 204
+ G+ ++ +A++ K + D + ++ G+ S + Q F+HN++ LEE L
Sbjct: 113 TSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHNDLADLEEQLA 172
Query: 205 QQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTLGST 264
D K I E VY DI P++ I L +Y A +VDE + G G+
Sbjct: 173 SVDPD-------RPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGAR 225
Query: 265 GHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPPFL 324
G G+ E G+ + +DMI G+L A G +GG+ S+ +I+ R G+ F+ +LPP +
Sbjct: 226 GGGIAERDGL-MDRIDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTTALPPAV 284
Query: 325 AVAANKALHLLK 336
A A A+ LK
Sbjct: 285 AAGATAAIRHLK 296
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 135 bits (342), Expect = 2e-35
Identities = 76/275 (27%), Positives = 137/275 (49%), Gaps = 12/275 (4%)
Query: 87 THNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEETALY 146
+++YL ++P + + +D G G+ G R GTN H+ LE ++A G E L+
Sbjct: 52 SNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLF 111
Query: 147 SFGFSTSASAIAAYVKR--NDAVFVDE-NINFAIQTGLIASRCKVQYFKHNNMQHLEELL 203
+ G+ ++ +A++ R + DE N I+ G+ SR + + F+HN+ LE L
Sbjct: 112 TSGYVSNWAALSTLGSRLPGCVILSDELNHASMIE-GIRHSRAEKRIFRHNDPADLERKL 170
Query: 204 RQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTLGS 263
D K + E VY DI P+ +I + K+ A ++DE + G G
Sbjct: 171 SDLD-------PHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGP 223
Query: 264 TGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPPF 323
G G+ E G++ + + +I G+L A G +GG+ GS+ + + R SG+ F+ SLPP
Sbjct: 224 RGGGIAEREGLA-DRLTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFTTSLPPA 282
Query: 324 LAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQ 358
+A A ++ LKA+ + + +++ + + L +
Sbjct: 283 VAAGALASVRHLKASSAERERHQDRVARLRARLDK 317
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 104 bits (262), Expect = 8e-25
Identities = 72/396 (18%), Positives = 139/396 (35%), Gaps = 70/396 (17%)
Query: 80 IPCINFATHNYLSFVE-NPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFM 138
IN ++ YL P + K D + G R YG +L +A F+
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKD------ALAGGTRNLYGPTDGLPELREALAKFL 54
Query: 139 GLEE--------TALYSFGFSTSASAIAAYVKRN--DAVFVDENINFA-IQTGLIASRCK 187
G ++ G + A+ ++ N DA+ V + + +
Sbjct: 55 GRSPVLKLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVP-APTYPSYIRIFRLAGGE 113
Query: 188 VQYFK-------HNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICP---LK 237
V + H + LE L++ E + K ++ + + + L+
Sbjct: 114 VVRYPLYSSNDFHLDFDALEAALKEATEGN--------KVVLHTSPHNPTGTVATLEELE 165
Query: 238 DILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVG--- 294
+L L ++ + VDE+ + GS T ++ +++GS A G G
Sbjct: 166 KLLDLAKEHNILLLVDEAYAGFVFGSLDAVAT-RALLAEGPNLLVVGSFSKAFGLAGWRV 224
Query: 295 GFCVGSSYIIEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHS 354
G+ +G++ +I R + S L A A + L + + +++E+ + +
Sbjct: 225 GYILGNAAVISQLRKLARPFYSSTHLQAAAAAALSDPLLVASELEEMRQRIKERRDYLRD 284
Query: 355 LLS----QHKVTQR--FLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAIT 408
L +Q FL+ G P L L ++ LL+ + G +T
Sbjct: 285 GLEAAGLSVLPSQAGFFLLTGLD--PEAALAL--------AQVLLE-------EVGVYVT 327
Query: 409 CPSHLDQEAKKQKPSIRITCNISHTEQDMNSLIETL 444
S +RIT TE+++ L+E +
Sbjct: 328 PGSSF-----GGPGWLRITVA-GGTEEELEELLEAI 357
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 94.7 bits (236), Expect = 4e-21
Identities = 60/255 (23%), Positives = 105/255 (41%), Gaps = 11/255 (4%)
Query: 83 INFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEE 142
I +++YL+ +PDI K I + + G F + E +A+F G E
Sbjct: 57 IILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFES 116
Query: 143 TALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHNNMQHLEEL 202
L G++ + + N V++D + ++ G+ A+ + F+HN++ HL
Sbjct: 117 CLLCQSGWAANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDVDHLRRQ 176
Query: 203 LRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTLG 262
+ + I+V+ VY + I PL DI+ + ++ + VDES S GT G
Sbjct: 177 IERHG----------PGIIVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHG 226
Query: 263 STGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPP 322
G G+ G+ T V I SL A G + E+ FS++L P
Sbjct: 227 PQGAGLVAELGL-TSRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIFSSTLLP 285
Query: 323 FLAVAANKALHLLKA 337
L ++++
Sbjct: 286 HEIAGLEATLEVIES 300
>gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional.
Length = 370
Score = 93.7 bits (233), Expect = 5e-21
Identities = 72/273 (26%), Positives = 117/273 (42%), Gaps = 17/273 (6%)
Query: 83 INFATHNYLSFVENPDIEKCAID------CIDKN--GVGSCGPRGFYGTNVVHLDLENDI 134
I+F T+++L F + + ++ C +G G R G + + DLE+ I
Sbjct: 7 IDFVTNDFLGFSRSDTL-VHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKI 65
Query: 135 ASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQYFKHN 194
A F G E + G+ + A D V DE ++ ++ L Q F+HN
Sbjct: 66 AHFHGAPEAFIVPSGYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHN 125
Query: 195 NMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDE 254
++ HLE LL + R ++ FI V VY + PL+ I++L KY A + VDE
Sbjct: 126 DLDHLESLL--ESCRQRSFGRI---FIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDE 180
Query: 255 SVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGY 314
+ + G G G G G E ++ + ALGS+G + SS + + L+
Sbjct: 181 AHAMGIFGDDGKGFCHSLGY--ENFYAVLVTYSKALGSMGAALLSSSEVKQDLMLNSPPL 238
Query: 315 CFSASLPPFLAVAANKAL-HLLKANPSLLTKLR 346
+S LPP L ++ A L + +L
Sbjct: 239 RYSTGLPPHLLISIQVAYDFLSQEGELARKQLF 271
>gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase.
Length = 476
Score = 80.5 bits (198), Expect = 3e-16
Identities = 70/266 (26%), Positives = 122/266 (45%), Gaps = 27/266 (10%)
Query: 85 FATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGLEETA 144
F+ ++YL +P I A + + G+G G G H LE+ +A E+
Sbjct: 107 FSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCL 166
Query: 145 LYSFGFSTS----------ASAIAAYVK--RND--AVFVDENINFAIQTGL-IASR---C 186
+ GF+ + AS +AA K +N+ A+F D + +I G+ +A R
Sbjct: 167 VCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNV 226
Query: 187 KVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKY 246
+V ++H +M HL LL + K+ +K ++ + ++ D P++++ LR KY
Sbjct: 227 EVFVYRHCDMYHLNSLLS--------SCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKY 278
Query: 247 QARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEH 306
+ +D++ G G GV E F +VD+ +G+L A G GGF S +
Sbjct: 279 GFLLVIDDAHGTFVCGENGGGVAEEFNCEA-DVDLCVGTLSKAAGCHGGFIACSKKWKQL 337
Query: 307 HRLSGSGYCFSASLPPFLAVAANKAL 332
+ G + FS ++P +A AA A+
Sbjct: 338 IQSRGRSFIFSTAIPVPMAAAAYAAV 363
>gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional.
Length = 402
Score = 65.8 bits (161), Expect = 1e-11
Identities = 92/404 (22%), Positives = 153/404 (37%), Gaps = 65/404 (16%)
Query: 66 VVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGV-GSCGPRGFYGTN 124
V +++ I +G +NF + +YL +P I + A+D + + G R
Sbjct: 32 VGEREGILITLADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRT--RVR 89
Query: 125 VVHL-DLENDIASFMGLEETALYSFGFSTSASAIAA--------YVKRNDAVFV-DENIN 174
L DLE ++ G A S SA+ + V D+N +
Sbjct: 90 SQILKDLEEALSELFG----ASVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAH 145
Query: 175 FAIQ--TGLIASRCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVY-MNSA 231
++ G+ A +V+ HN++ LE++ + + +GVY M
Sbjct: 146 ASLNILKGICADETEVETIDHNDLDALEDICKTNK----------TVAYVADGVYSMG-- 193
Query: 232 DICPLKDILSLRSKYQARIFVDESVSFGTLGSTGHG-VTEYFGVSTEEVDMIIGSLEHAL 290
I P+K++L L+ KY +++D++ G G G V E +I SL A
Sbjct: 194 GIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAF 253
Query: 291 GSVGGFC-VGSSYIIEHHRLSGSGYCFSASL--PPFLAVAANKALHLLKANPSLLTKLRE 347
G+ GG +G + IE FS SL A+ A+ +HL + L KL+
Sbjct: 254 GASGGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQN 313
Query: 348 KCNTMHSLLSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEV-ASKKLLQTICDMCIQAGFA 406
SL+ Q P++ +Y+ D + A+K+LL GF
Sbjct: 314 NIALFDSLIPTE--------QSGSFLPIRLIYIGDEDTAIKAAKQLL--------DRGFY 357
Query: 407 ITC---PSHLDQEAKKQKPSIRITCNISHTEQDMNSLIETLCKS 447
+ P K + +RI SHT + I+ LC
Sbjct: 358 TSPVFFPV-----VAKGRAGLRIMFRASHTNDE----IKRLCSL 392
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 33.9 bits (78), Expect = 0.17
Identities = 37/215 (17%), Positives = 73/215 (33%), Gaps = 22/215 (10%)
Query: 236 LKDILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVG- 294
L+++ L K+ I DE ++ L G + E +++ S G G
Sbjct: 154 LEELAELAKKHGILIISDE--AYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGL 211
Query: 295 --GFCVGSSYIIEHHRLSGSGYCFSASLPPFLAVAANKAL-HLLKANPSLLTKLREKCNT 351
G+ + + Y S AA AL + L + R + +
Sbjct: 212 RIGYLIAPPEELLERLKKLLPYTTSGP-STLSQAAAAAALDDGEEHLEELRERYRRRRDA 270
Query: 352 MHSLLSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPS 411
+ L + G +L L + DDE ++LL +AG + S
Sbjct: 271 LLEALKELGPLVVVKPSG---GFFLWLDLPEGDDEEFLERLLL-------EAGVVVRPGS 320
Query: 412 HLDQEAKKQKPSIRITCNISHTEQDMNSLIETLCK 446
+ + +R+ + + E+++ +E L +
Sbjct: 321 AFGEGGEG---FVRL--SFATPEEELEEALERLAE 350
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 31.5 bits (72), Expect = 1.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 322 PFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFLV-QGHRDTPLK 376
PFLA+ HL K L KL+ + + LL+ + +R L Q H+ +K
Sbjct: 674 PFLALLK----HLRKLPKPLPEKLQSLLDKLSKLLALALLERRPLALQKHKPLAIK 725
>gnl|CDD|146109 pfam03307, Adeno_E3_15_3, Adenovirus 15.3kD protein in E3 region.
Length = 116
Score = 29.7 bits (67), Expect = 1.2
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 24/97 (24%)
Query: 355 LLSQHKVTQRFLVQGHRDTPLKY-LYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSHL 413
L+ Q K++ Q H L Y L Q+ QT M +T
Sbjct: 41 LVKQAKLSYELSAQEHE---LSYTLPPQR-----------QTFVTMVGVNPIKVT----- 81
Query: 414 DQEAKKQKPSIRITCNISHTEQDMNSLIETLCKSHDI 450
Q++ + + SIR +C H + + +LI+TLC D+
Sbjct: 82 -QQSGETEGSIRCSC---HNPECLYTLIKTLCGLRDL 114
>gnl|CDD|172690 PRK14202, PRK14202, camphor resistance protein CrcB; Provisional.
Length = 128
Score = 29.3 bits (66), Expect = 1.9
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 289 ALGSVGGFCVGSSYIIEHHRLSGSGYCFSASL 320
G GGF SSY+ E L G F ASL
Sbjct: 73 VTGFCGGFTTFSSYMYEIAALLRDGELFYASL 104
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain. Histones can
be reversibly acetylated on several lysine residues.
Regulation of transcription is caused in part by this
mechanism. Histone deacetylases catalyze the removal of
the acetyl group. Histone deacetylases are related to
other proteins.
Length = 300
Score = 30.3 bits (69), Expect = 2.0
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 22/66 (33%)
Query: 284 GSLEHALGSVGGFCVGSSYIIE------------HH--RLSGSGYCFSASLPPF--LAVA 327
GS E AL + GG + ++ HH R SG+C F +A+A
Sbjct: 81 GSYEAALLAAGGTLEAADLVLSGENAFAAVRPPGHHAERDRASGFCL------FNNVAIA 134
Query: 328 ANKALH 333
A L
Sbjct: 135 ARYLLK 140
>gnl|CDD|235403 PRK05318, PRK05318, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 432
Score = 30.2 bits (69), Expect = 2.5
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 438 NSLIETLCKSHDI 450
+SLIE+LC +HDI
Sbjct: 92 DSLIESLCLAHDI 104
>gnl|CDD|172360 PRK13833, PRK13833, conjugal transfer protein TrbB; Provisional.
Length = 323
Score = 29.4 bits (66), Expect = 3.6
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 265 GHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPPFL 324
GHGV +S +++IGS+ HAL S I L G+ F LPP +
Sbjct: 48 GHGVAPAGEMSAAAAEVVIGSVAHALQSE----ADDERPIISGELPIGGHRFEGLLPPVV 103
Query: 325 A 325
+
Sbjct: 104 S 104
>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate
transport and metabolism].
Length = 243
Score = 29.2 bits (66), Expect = 3.8
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 14/72 (19%)
Query: 246 YQARIFVDESVS-FGTLGS--TGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSY 302
+ F +E + F +GS GH T V++ GSL L G +G
Sbjct: 82 AEKGYFPEEELETFRRIGSRLPGHPERNK----TPGVEVSTGSLGQGLSVAVGMALG--- 134
Query: 303 IIEHHRLSGSGY 314
+L GS Y
Sbjct: 135 ----AKLKGSPY 142
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 28.5 bits (64), Expect = 5.2
Identities = 34/170 (20%), Positives = 54/170 (31%), Gaps = 24/170 (14%)
Query: 140 LEETALYSFG-------FSTSAS-----AIAAYVKRNDAVFVDENINFAIQTGLIASR-- 185
LEE F S + A+ A + D V VD N + + A
Sbjct: 5 LEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDAN-GHGSRYWVAAELAG 63
Query: 186 CKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSK 245
K ++ + L + I++ + + PLK+I + +
Sbjct: 64 AKPVPVPVDDAGYGG--LDVAILEELKAKP-NVALIVITPNTTSGGVLVPLKEIRKIAKE 120
Query: 246 YQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGG 295
Y + VD + S GV G D++ SL LG GG
Sbjct: 121 YGILLLVDA--ASAGGASPAPGVLIPEGG----ADVVTFSLHKNLGGEGG 164
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type. This
family consists of glycogen (or starch) synthases that
use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose
(EC 2.4.1.11) as in animals, as the glucose donor. This
enzyme is found in bacteria and plants. Whether the name
given is glycogen synthase or starch synthase depends on
context, and therefore on substrate [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 473
Score = 29.2 bits (66), Expect = 5.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 310 SGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKC 349
SG+G+ F P L A ++AL L + +PSL L++
Sbjct: 413 SGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNA 452
>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation
factor; Provisional.
Length = 614
Score = 28.9 bits (65), Expect = 6.6
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Query: 176 AIQTGLIASRCKVQYFKHNNMQHLEELLRQQDE----------RDTLNSKVTKKFII 222
A Q G+I + K +Y++++ + ++R+ D+ RD L V +K I
Sbjct: 530 AAQQGIITAIVKDRYYRNDRIVQFANMIRELDQECGSTCAADFRDRLG--VGRKLAI 584
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 28.5 bits (65), Expect = 8.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 10/48 (20%)
Query: 315 CFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVT 362
++ P F L + KANP ++ KL EK +LL + K+T
Sbjct: 355 RYTEEAPLF------AGLFVFKANPKIIEKLEEK----GALLKEEKIT 392
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 28.0 bits (63), Expect = 9.6
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 218 KKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDES 255
+IVEG+ + L D LR +IFVD
Sbjct: 108 NDVVIVEGILL-------LYD-ERLRDLMDLKIFVDTD 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.395
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,619,948
Number of extensions: 2186979
Number of successful extensions: 2100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2045
Number of HSP's successfully gapped: 44
Length of query: 457
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 357
Effective length of database: 6,502,202
Effective search space: 2321286114
Effective search space used: 2321286114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.1 bits)