RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15447
(457 letters)
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 259 bits (664), Expect = 1e-82
Identities = 100/389 (25%), Positives = 181/389 (46%), Gaps = 38/389 (9%)
Query: 66 VVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNV 125
+ K V I+G + F +++YL + I K A D ++K G G G R GT
Sbjct: 29 PIQSKQDTEVKIDGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLD 88
Query: 126 VHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFA-IQTGLIAS 184
+H++LE +++++G E L+S GF ++ ++ + RND + +DE + A I G S
Sbjct: 89 IHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDE-RDHASIIDGSRLS 147
Query: 185 RCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVY-MNSADICPLKDILSLR 243
KV + HNNM+ L L + E + K I +G++ M DI L ++ S+
Sbjct: 148 FSKVIKYGHNNMEDLRAKLSRLPED-------SAKLICTDGIFSM-EGDIVNLPELTSIA 199
Query: 244 SKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYI 303
+++ A + VD++ S G +G G G +FG+ ++VD+I+G+ +L S+GGF G + +
Sbjct: 200 NEFDAAVMVDDAHSLGVIGHKGAGTASHFGL-NDDVDLIMGTFSKSLASLGGFVAGDADV 258
Query: 304 IEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQ 363
I+ + + FSAS+ P + KAL +++ P + KL + + + L
Sbjct: 259 IDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQL-----LD 313
Query: 364 RFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAG-FAI-----TCPSHLDQEA 417
G ++P+ +++ +E + M G F P
Sbjct: 314 HGFDLGATESPILPIFI--RSNEKT-----FWVTKMLQDDGVFVNPVVSPAVP------- 359
Query: 418 KKQKPSIRITCNISHTEQDMNSLIETLCK 446
++ IR + +HT ++ IE + K
Sbjct: 360 -AEESLIRFSLMATHTYDQIDEAIEKMVK 387
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 255 bits (653), Expect = 9e-81
Identities = 93/386 (24%), Positives = 164/386 (42%), Gaps = 36/386 (9%)
Query: 69 QKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHL 128
KS I G I T+NY+ +PD+ + ++K G G+CG R GT H+
Sbjct: 53 VKSPTEAVIRGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHM 112
Query: 129 DLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFA-IQTGLIASRCK 187
++E + F G ++S G+ + I+ + + V +D + A I G +
Sbjct: 113 EVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDA-DSHASIYDGCQQGNAE 171
Query: 188 VQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVY-MNSADICPLKDILSLRSKY 246
+ F+HN+++ L++ L + + K +++EGVY M DI PLK+++++ K+
Sbjct: 172 IVRFRHNSVEDLDKRLGRLPKE-------PAKLVVLEGVYSML-GDIAPLKEMVAVAKKH 223
Query: 247 QARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEH 306
A + VDE+ S G G G GV E G+ ++D ++G+ ++G+VGGF V + E
Sbjct: 224 GAMVLVDEAHSMGFFGPNGRGVYEAQGL-EGQIDFVVGTFSKSVGTVGGFVVSNHPKFEA 282
Query: 307 HRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFL 366
RL+ Y F+ASLPP + A ++ L +L +H L L
Sbjct: 283 VRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGFR---L 339
Query: 367 VQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAI------TCPSHLDQEAKKQ 420
D+ + + L D E A + + G + P
Sbjct: 340 GTETCDSAIVAVML--EDQEQA-----AMMWQALLDGGLYVNMARPPATP--------AG 384
Query: 421 KPSIRITCNISHTEQDMNSLIETLCK 446
+R + HT + +++
Sbjct: 385 TFLLRCSICAEHTPAQIQTVLGMFQA 410
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 243 bits (623), Expect = 2e-76
Identities = 69/381 (18%), Positives = 134/381 (35%), Gaps = 42/381 (11%)
Query: 74 IVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLEND 133
+ I +++YL+ +P I+ + + F + +E
Sbjct: 53 LGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKR 112
Query: 134 IASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFA-IQTGLIASRCKVQYFK 192
+A F G +E L G++ + + + N V++D + G + + F
Sbjct: 113 LAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDF-FAHMSLWEGARYANAQAHPFM 171
Query: 193 HNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVY-MNSADICPLKDILSLRSKYQARIF 251
HNN HL L+++ I+V+ +Y I PL +++++ ++ +
Sbjct: 172 HNNCDHLRMLIQRHG----------PGIIVVDSIYSTL-GTIAPLAELVNISKEFGCALL 220
Query: 252 VDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSG 311
VDES S GT G G G+ G+ T EV + SL G ++ +
Sbjct: 221 VDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFIS 279
Query: 312 SGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHR 371
FS++L P+ A L ++++ + L + LSQ +T
Sbjct: 280 YPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLT------IRS 333
Query: 372 DTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGF---AI---TCPSHLDQEAKKQKPSIR 425
++ + L D+ + + D G K K IR
Sbjct: 334 ESQIIGLET--GDERNT-----EKVRDYLESNGVFGSVFCRPATS--------KNKNIIR 378
Query: 426 ITCNISHTEQDMNSLIETLCK 446
++ N ++ + +IE
Sbjct: 379 LSLNSDVNDEQIAKIIEVCSD 399
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 241 bits (618), Expect = 7e-76
Identities = 108/390 (27%), Positives = 173/390 (44%), Gaps = 36/390 (9%)
Query: 66 VVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNV 125
++ + + +NF +NYL ++P + K A +++ G G R GT
Sbjct: 29 IITSPQNAEIKVGEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQT 88
Query: 126 VHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFA-IQTGLIAS 184
+H +LE DI+ F+G ++T LYS F + + DA+ DE +N A I G+
Sbjct: 89 IHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDE-LNHASIIDGIRLC 147
Query: 185 RCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRS 244
+ + +K+N M LE L++ DE+ K I +GV+ I LK I L
Sbjct: 148 KAQRYRYKNNAMGDLEAKLKEADEKGA-----RFKLIATDGVFSMDGIIADLKSICDLAD 202
Query: 245 KYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHAL-GSVGGFCVGSSYI 303
KY A + VD+S + G +G G G EY GV + VD++ G+L AL G+ GG+ G I
Sbjct: 203 KYNALVMVDDSHAVGFIGENGRGTPEYCGV-ADRVDILTGTLGKALGGASGGYTSGHKEI 261
Query: 304 IEHHRLSGSGYCFSASLPPFLAVAANKALHLLKA-NPSLLTKLREKCNTMHSLLSQHKVT 362
IE R Y FS ++ P + + K L LLK P L +L+E + + +
Sbjct: 262 IEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEK---- 317
Query: 363 QRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGF---AI---TCPSHLDQE 416
F + + P+ + L D ++A + D +Q G P
Sbjct: 318 LGFQL-VPGNHPIIPVML--GDAQLA-----TNMADHLLQEGIYVVGFSYPVVP------ 363
Query: 417 AKKQKPSIRITCNISHTEQDMNSLIETLCK 446
K IR+ + HT+Q ++ IE +
Sbjct: 364 --MGKARIRVQMSAVHTQQQLDRAIEAFGQ 391
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 239 bits (611), Expect = 8e-75
Identities = 103/391 (26%), Positives = 162/391 (41%), Gaps = 38/391 (9%)
Query: 66 VVDQKSGYIVNI-NGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTN 124
++ + + +G INF +NYL +PD+ A +D +G G R GT
Sbjct: 30 IITSAQQADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQ 89
Query: 125 VVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFA-IQTGLIA 183
H +LE +A+F+G+E+ LYS F + + DA+ D +N A I G+
Sbjct: 90 DSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDA-LNHASIIDGVRL 148
Query: 184 SRCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVY-MNSADICPLKDILSL 242
+ K + +N+MQ LE L++ E + I +GV+ M I LK + L
Sbjct: 149 CKAKRYRYANNDMQELEARLKEARE-----AGARHVLIATDGVFSM-DGVIANLKGVCDL 202
Query: 243 RSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHAL-GSVGGFCVGSS 301
KY A + VD+S + G +G G G EY V VD+I G+L AL G+ GG+
Sbjct: 203 ADKYDALVMVDDSHAVGFVGENGRGSHEYCDV-MGRVDIITGTLGKALGGASGGYTAARK 261
Query: 302 YIIEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKV 361
++E R Y FS SL P + A+ K L +++A L +L +S
Sbjct: 262 EVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-- 319
Query: 362 TQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGF---AI---TCPSHLDQ 415
F + D + + L D VA Q + G P
Sbjct: 320 --GFTL-AGADHAIIPVML--GDAVVA-----QKFARELQKEGIYVTGFFYPVVP----- 364
Query: 416 EAKKQKPSIRITCNISHTEQDMNSLIETLCK 446
K + IR + +HT + + +E +
Sbjct: 365 ---KGQARIRTQMSAAHTPEQITRAVEAFTR 392
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 224 bits (573), Expect = 2e-69
Identities = 84/391 (21%), Positives = 164/391 (41%), Gaps = 43/391 (10%)
Query: 66 VVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNV 125
V Q +G + + +NF++++YL +P I + ++ G+GS G G +V
Sbjct: 25 PVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSV 84
Query: 126 VHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFA-IQTGLIAS 184
VH LE ++A ++G L+ GF+ + + IAA + + D + D ++ A + S
Sbjct: 85 VHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADR-LSHASLLEAASLS 143
Query: 185 RCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVY-MNSADICPLKDILSLR 243
+++ F HN++ HL LL ++ ++ EGV+ M+ D PL +I +
Sbjct: 144 PSQLRRFAHNDVTHLARLLASPCPG--------QQMVVTEGVFSMD-GDSAPLAEIQQVT 194
Query: 244 SKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYI 303
++ + VD++ G +G G G V + ++++ + G G + SS +
Sbjct: 195 QQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV---KPELLVVTFGKGFGVSGAAVLCSSTV 251
Query: 304 IEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPS--LLTKLREKCNTMHSLLSQHKV 361
++ +S S+PP A A +L +++++ KL + +
Sbjct: 252 ADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPF 311
Query: 362 TQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGF---AI---TCPSHLDQ 415
T + ++ L + D+ A + + Q G AI T P
Sbjct: 312 T-----LADSCSAIQPLIV--GDNSRA-----LQLAEKLRQQGCWVTAIRPPTVP----- 354
Query: 416 EAKKQKPSIRITCNISHTEQDMNSLIETLCK 446
+R+T +H QD++ L+E L
Sbjct: 355 ---AGTARLRLTLTAAHEMQDIDRLLEVLHG 382
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 209 bits (533), Expect = 3e-63
Identities = 84/387 (21%), Positives = 152/387 (39%), Gaps = 35/387 (9%)
Query: 69 QKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHL 128
+ + + ++YL ++P + + ++ G GS G R GT H
Sbjct: 35 KAQWNRPDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHR 94
Query: 129 DLENDIASFMGLEETALYSFGFSTSASAIAAYVK--RNDAVFVDENINFA--IQTGLIAS 184
LE +IA E ++S ++ + + ++ ++ D +N A I+ G+ +
Sbjct: 95 RLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDS-LNHASMIE-GIKRN 152
Query: 185 RCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRS 244
+ F+HN++ HL EL+ D K I E VY D P+K+I +
Sbjct: 153 AGPKRIFRHNDVAHLRELIAADDPA-------APKLIAFESVYSMDGDFGPIKEICDIAE 205
Query: 245 KYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYII 304
++ A ++DE + G G G GV E G+ +D+ G+L A G GG+ S+ ++
Sbjct: 206 EFGALTYIDEVHAVGMYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFGGYIAASARMV 264
Query: 305 EHHRLSGSGYCFSASLPPFLAVAANKALHLLKA--NPSLLTKLREKCNTMHSLLSQHKVT 362
+ R G+ FS SLPP +A A ++ LK L + + L +
Sbjct: 265 DAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMP 324
Query: 363 QRFLVQGHRDTPLKYLYLQKSDDEVA---SKKLLQTICDMCIQAGFAITCPSHLDQEAKK 419
+ G P+ + D S LL + +Q T P +
Sbjct: 325 --IIDHGSHIVPVV-IG----DPVHTKAVSDMLLSDY-GVYVQPINFPTVP--------R 368
Query: 420 QKPSIRITCNISHTEQDMNSLIETLCK 446
+R T + H + ++ L+ +
Sbjct: 369 GTERLRFTPSPVHDLKQIDGLVHAMDL 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 7e-10
Identities = 90/575 (15%), Positives = 162/575 (28%), Gaps = 237/575 (41%)
Query: 26 SLSLSKHKK--HTINVDALINNWTPEPIVSKAEKFKDVSSKYVVDQKSGYIVNINGIPCI 83
L+LS H H + V P A + ++ +K + + P
Sbjct: 8 PLTLS-HGSLEHVLLV--------PTASFFIASQLQEQFNKILPE------------PTE 46
Query: 84 NFATHN-----------YLSFVENPDIEKCAIDCIDKNGVGSCGP----------RGFYG 122
FA + +L +V ++ + VG +
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVS---------SLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 123 TNVVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVK------------RNDAVF-- 168
N +H L A + +T L + I Y+ N A+F
Sbjct: 98 GNDIH-AL---AAKLLQENDTTL-----VKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 169 -VDENIN-FAI---QTGLI------------ASRCKVQYFKHNNMQHLEELLRQQDERDT 211
+ N AI Q G V + + L EL+R + +
Sbjct: 149 VGEGNAQLVAIFGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 212 LNSKVTKKFIIVE----------GVYMNSADI-CPLKDILSLRSKYQ--ARIFVDESVSF 258
+ ++ I+E Y+ S I CPL ++ L + Y A++ +
Sbjct: 208 VFTQG---LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL-AHYVVTAKLL---GFTP 260
Query: 259 GTL-----GSTGHG---VT--------------------------------EYFGVSTEE 278
G L G+TGH VT E + ++
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 279 VDMIIGSLEHALG------SVGGFCVGSSYIIEHHRLSGSGYCFSASLPPF--LAVA-AN 329
++ SLE+ G S+ + + ++ ++ LP + ++ N
Sbjct: 321 PSILEDSLENNEGVPSPMLSISN--LTQEQVQDYVNK------TNSHLPAGKQVEISLVN 372
Query: 330 KALHLLKANP-----SLLTKLREKCNTMHSLLSQHKV--TQRFLVQGHRDTPLKYLYLQK 382
A +L+ + P L LR+ L Q ++ ++R L +R +L
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSG--LDQSRIPFSERKLKFSNR-----FL---- 421
Query: 383 SDDEVASKKLLQTICDMCIQAGFAITCP--SHLDQEAKKQ-------------KPSIRIT 427
+ P SHL A I+I
Sbjct: 422 -----------------------PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 428 CNISHTE--QDM----NSLIETLCKSHDIAVQPLN 456
+ T D+ S+ E + I P+
Sbjct: 459 --VYDTFDGSDLRVLSGSISERIVD--CIIRLPVK 489
Score = 36.2 bits (83), Expect = 0.028
Identities = 61/332 (18%), Positives = 108/332 (32%), Gaps = 122/332 (36%)
Query: 8 DFYTSVGLFLPLTLFI---------VLSLSLSKHKKHTINVDALINNW-TPEPIVS---- 53
F+ SV + + FI SL S I D+L NN P P++S
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS------ILEDSLENNEGVPSPMLSISNL 344
Query: 54 ---KAEKFKDVSSKYVVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKN 110
+ + + + ++ ++ K I +NG A + V
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNG------AKN----LV---------------- 378
Query: 111 GVGSCG-PRGFYGTNVVHLDLENDIASFMGLEET-ALYS---FGFSTSASAIAA-----Y 160
V G P+ YG N L L A GL+++ +S FS +A+
Sbjct: 379 -V--SGPPQSLYGLN---LTLRKAKAP-SGLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 161 VKR-NDAVFVD-ENINFAIQTGLIASRCKVQ-YFKHN--NMQHL-----EELLRQQDERD 210
+ +D + D N + A ++ Y + +++ L E ++
Sbjct: 432 LVPASDLINKDLVKNNVSFN----AKDIQIPVYDTFDGSDLRVLSGSISERIVDC----- 482
Query: 211 TLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDESVSFGTLGSTGHG--- 267
II V + +++A +D FG G++G G
Sbjct: 483 ----------IIRLPVKWETTT------------QFKATHILD----FGPGGASGLGVLT 516
Query: 268 --VTEYFGVSTEEVDMII-GSLEHALGSVGGF 296
+ GV +I+ G+L+ GF
Sbjct: 517 HRNKDGTGVR-----VIVAGTLDINPDDDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 2e-07
Identities = 65/499 (13%), Positives = 137/499 (27%), Gaps = 168/499 (33%)
Query: 9 FYTSVG-------LFLPL-TLFIVLSLSLSKHKKHTINVDALINNWTPEP-IVSKAEKFK 59
F+ ++ + L L + + + H+ N+ I++ E + K++ ++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 60 -------DVSSKYVVDQKSGYIVNINGIPC-INFATHNYLSFVENPDIEKCAIDCIDKNG 111
+V + + N++ C I T K D +
Sbjct: 245 NCLLVLLNVQNAKAWNA-----FNLS---CKILLTTRF-----------KQVTDFLS--- 282
Query: 112 VGSCGPRGFYGTNVVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDE 171
H+ L++ + E +L + V
Sbjct: 283 ----------AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-------- 324
Query: 172 NIN-FAIQTGLIASRCKV-----QYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEG 225
N + +IA + +KH N L ++ + + L +K
Sbjct: 325 -TNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLS 379
Query: 226 VYMNSADICPLKDILSL----RSKYQARIFVDESVSFGTLGSTG-------HGVTEYFGV 274
V+ SA I P +LSL K + V++ + + + Y +
Sbjct: 380 VFPPSAHI-PTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLEL 435
Query: 275 STEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPP--------FLAV 326
+ + +L H I++H+ + + +PP +
Sbjct: 436 KVKLENEY--AL-HRS------------IVDHYNIP-KTFDSDDLIPPYLDQYFYSHI-- 477
Query: 327 AANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRDTPLKYLYLQKSDDE 386
HL R T + ++L D
Sbjct: 478 ----GHHLKNIE-----------------------------HPERMTLFRMVFL---DFR 501
Query: 387 VASKKLLQTICDMCIQAGFAITCPSHLD---QEAKKQKPSIRITCNISHTEQDMNSLIET 443
+K+ A + Q+ K KP I N E+ +N++++
Sbjct: 502 FLEQKI--------RHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDF 551
Query: 444 L---------CKSHDIAVQ 453
L K D+ ++
Sbjct: 552 LPKIEENLICSKYTDL-LR 569
Score = 29.1 bits (64), Expect = 3.6
Identities = 32/233 (13%), Positives = 58/233 (24%), Gaps = 109/233 (46%)
Query: 274 VSTEEVDMIIGS-------------------------LEHALGSVGGF--------CVGS 300
+S EE+D II S +E L F
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 301 S-----YIIEHHRLSGSGYCFS----ASLPPFLAVAANKALHLLKANP------------ 339
S YI + RL F+ + L P+L + +AL L+
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLIDGVLGSGK 163
Query: 340 SLLTK--LRE-----------------KCNTMHSLLSQ-----HKVTQRFLVQGHRDTP- 374
+ + CN+ ++L +++ + + +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 375 ----------LKYLYLQKS--------DDEVASKKLLQTICDMCIQAGFAITC 409
L+ L K + V + K F ++C
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNA---------FNLSC 266
>2gre_A Deblocking aminopeptidase; structural genomi protein structure
initiative, midwest center for structural genomics,
MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1
c.56.5.4
Length = 349
Score = 31.0 bits (71), Expect = 0.72
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 401 IQAGFAI-TCPSHLDQEAKKQKPSIRITCNISHTEQDMNSLIETLCKSHDIAVQ 453
A+ Q + + SI + + + L K++ I +
Sbjct: 234 TVEYLAVDMGALGDGQASDEYTVSICAKDSSGPYHYALRKHLVELAKTNHIEYK 287
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 30.2 bits (69), Expect = 1.0
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 17/56 (30%)
Query: 39 VDALINN---WTPEPIVSKAEKFKDV--------------SSKYVVDQKSGYIVNI 77
+ A+++N W E +A+ F + + + IV+I
Sbjct: 100 LRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHI 155
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
structural genomics, PSI-2, protein genomics, MCSG,
glycolysis isomerase; 2.60A {Thermoplasma acidophilum}
PDB: 3idd_A
Length = 399
Score = 29.7 bits (66), Expect = 2.4
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 2/101 (1%)
Query: 273 GVSTEEVDMIIGSLEHALGSVG-GFCVGSSYI-IEHHRLSGSGYCFSASLPPFLAVAANK 330
G + + + ++ +G G + S P + K
Sbjct: 116 GRENKGNEELADAISLDMGEYSFRVKSGVEHRAALVVSGPDLSDMIGDSDPHREGLPPEK 175
Query: 331 ALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHR 371
+ + +LS H+V + + G
Sbjct: 176 IRPTDPSGDRTAEVMNAYLEEARRILSDHRVNKERVKNGRL 216
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 28.8 bits (65), Expect = 2.7
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 9/36 (25%)
Query: 218 KKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVD 253
I++EGV++ + P D +++D
Sbjct: 125 SDMIMIEGVFLQRKEWRPFFDF---------VVYLD 151
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 28.9 bits (65), Expect = 3.9
Identities = 18/135 (13%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 126 VHLDLENDIASFMGLEETALYSFGFSTSA--SAIAAYVKRNDAVFVDENINFAIQTGLIA 183
+H + N + F+G + + + G + A + + + K++ V +DEN +++
Sbjct: 55 IHDFIHNQLPKFLGCDVARVTN-G-AREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAER 112
Query: 184 SRCKVQYFKHNNMQHLEELLRQQDERDTLNSKV-TKKFIIVEGVYMNSA--DICPLKDIL 240
+ + + + + ++ T+ + ++ Y + ++ +K I
Sbjct: 113 AGLNIALVPKTDYP--DYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIA 170
Query: 241 SLRSKYQARIFVDES 255
+ S+Y + V+ +
Sbjct: 171 KVCSEYDVPLLVNGA 185
>1qfg_A FHUA, protein (ferric hydroxamate uptake receptor); TONB-dependent
receptor, integral outer membrane protein,
ferrichrome-iron receptor; HET: PA1 GCN KDO GMH GLC GLA
FTT DAO MYR DDQ; 2.50A {Escherichia coli} SCOP: f.4.3.3
PDB: 1qff_A* 1qjq_A* 1qkc_A* 2grx_A* 1fi1_A* 2fcp_A*
1by5_A* 1by3_A* 1fcp_A*
Length = 725
Score = 28.9 bits (65), Expect = 4.3
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 147 SFGFSTSASAIAAY--VKRNDAVFVDENINFAIQTGLIASR 185
+ A Y K N+ + E F+++ G I +R
Sbjct: 540 PEDRPIVVTG-AVYNLTKTNNLMADPEGSFFSVEGGEIRAR 579
>3qlb_A FETA, enantio-pyochelin receptor; membrane protein, transport,
ferri-enantiopyochelin, outer M metal transport; HET:
CIT EFE; 3.26A {Pseudomonas fluorescens}
Length = 748
Score = 28.5 bits (64), Expect = 5.2
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 147 SFGFSTSASAIAAY--VKRNDAVFVDENINFAIQTGLIASR 185
G + + + + + N IQTG I R
Sbjct: 560 PPGIDSYITL-SLFDLTQENVLTTDPAQRLNKIQTGEINVR 599
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 27.9 bits (63), Expect = 10.0
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 10/48 (20%)
Query: 315 CFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVT 362
F+ F + + KAN ++ L EK +LL +T
Sbjct: 354 VFTEEGGQF------EGMFYDKANKAVTDLLTEK----GALLKLDFIT 391
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.395
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,751,948
Number of extensions: 405217
Number of successful extensions: 927
Number of sequences better than 10.0: 1
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 24
Length of query: 457
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 360
Effective length of database: 3,993,456
Effective search space: 1437644160
Effective search space used: 1437644160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)