RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15447
(457 letters)
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 186 bits (474), Expect = 3e-55
Identities = 101/380 (26%), Positives = 156/380 (41%), Gaps = 27/380 (7%)
Query: 71 SGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDL 130
I +G INF +NYL +PD+ A +D +G G R GT H +L
Sbjct: 36 QADITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKEL 95
Query: 131 ENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASRCKVQY 190
E +A+F+G+E+ LYS F + + DA+ D + +I G+ + K
Sbjct: 96 EQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYR 155
Query: 191 FKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARI 250
+ +N+MQ LE L++ E + I +GV+ I LK + L KY A +
Sbjct: 156 YANNDMQELEARLKEARE-----AGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALV 210
Query: 251 FVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHAL-GSVGGFCVGSSYIIEHHRL 309
VD+S + G +G G G EY V VD+I G+L AL G+ GG+ ++E R
Sbjct: 211 MVDDSHAVGFVGENGRGSHEYCDVM-GRVDIITGTLGKALGGASGGYTAARKEVVEWLRQ 269
Query: 310 SGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQG 369
Y FS SL P + A+ K L +++A L +L +S T
Sbjct: 270 RSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFT-----LA 324
Query: 370 HRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGF---AITCPSHLDQEAKKQKPSIRI 426
D + + L D VA Q + G P K + IR
Sbjct: 325 GADHAIIPVML--GDAVVA-----QKFARELQKEGIYVTGFFYPV-----VPKGQARIRT 372
Query: 427 TCNISHTEQDMNSLIETLCK 446
+ +HT + + +E +
Sbjct: 373 QMSAAHTPEQITRAVEAFTR 392
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 162 bits (411), Expect = 2e-46
Identities = 81/382 (21%), Positives = 158/382 (41%), Gaps = 29/382 (7%)
Query: 66 VVDQKSGYIVNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNV 125
V Q +G + + +NF++++YL +P I + ++ G+GS G G +V
Sbjct: 24 PVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSV 83
Query: 126 VHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIASR 185
VH LE ++A ++G L+ GF+ + + IAA + + D + D + ++ S
Sbjct: 84 VHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSP 143
Query: 186 CKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSK 245
+++ F HN++ HL LL + ++ EGV+ D PL +I + +
Sbjct: 144 SQLRRFAHNDVTHLARLLASPCPGQQM--------VVTEGVFSMDGDSAPLAEIQQVTQQ 195
Query: 246 YQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIE 305
+ + VD++ G +G G G V E + + G G G + SS + +
Sbjct: 196 HNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGK---GFGVSGAAVLCSSTVAD 252
Query: 306 HHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRF 365
+ +S S+PP A A +L +++++ R + + V
Sbjct: 253 YLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEG---DARREKLAALITRFRAGVQDLP 309
Query: 366 LVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITC---PSHLDQEAKKQKP 422
+ ++ L + D+ A + + + Q G +T P+
Sbjct: 310 FTLADSCSAIQPLIV--GDNSRALQ-----LAEKLRQQGCWVTAIRPPT-----VPAGTA 357
Query: 423 SIRITCNISHTEQDMNSLIETL 444
+R+T +H QD++ L+E L
Sbjct: 358 RLRLTLTAAHEMQDIDRLLEVL 379
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 396
Score = 135 bits (339), Expect = 5e-36
Identities = 82/376 (21%), Positives = 150/376 (39%), Gaps = 29/376 (7%)
Query: 75 VNINGIPCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDI 134
+ + ++YL ++P + + ++ G GS G R GT H LE +I
Sbjct: 40 PDGGKQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEI 99
Query: 135 ASFMGLEETALYSFGFSTSASAIAAYVKR--NDAVFVDENINFAIQTGLIASRCKVQYFK 192
A E ++S ++ + + ++ ++ D + ++ G+ + + F+
Sbjct: 100 AGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFR 159
Query: 193 HNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFV 252
HN++ HL EL+ D K I E VY D P+K+I + ++ A ++
Sbjct: 160 HNDVAHLRELIAADD-------PAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYI 212
Query: 253 DESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGS 312
DE + G G G GV E G+ +D+ G+L A G GG+ S+ +++ R
Sbjct: 213 DEVHAVGMYGPRGAGVAERDGL-MHRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAP 271
Query: 313 GYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRD 372
G+ FS SLPP +A A ++ LK KLR+ +L + H
Sbjct: 272 GFIFSTSLPPAIAAGAQASIAFLKTAEG--QKLRDAQQMHAKVLKMRLKALGMPIIDH-G 328
Query: 373 TPLKYLYLQKSDDEVA-SKKLLQTICDMCIQAGF---AITCPSHLDQEAKKQKPSIRITC 428
+ + + + A S LL G I P+ + +R T
Sbjct: 329 SHIVPVVIGDPVHTKAVSDMLLS-------DYGVYVQPINFPT-----VPRGTERLRFTP 376
Query: 429 NISHTEQDMNSLIETL 444
+ H + ++ L+ +
Sbjct: 377 SPVHDLKQIDGLVHAM 392
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 66.0 bits (159), Expect = 2e-12
Identities = 38/327 (11%), Positives = 83/327 (25%), Gaps = 24/327 (7%)
Query: 121 YGTNVVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAIQTG 180
YG + +LE A G E G + +I A+ +R D V ++ + +
Sbjct: 30 YGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEV 89
Query: 181 LIASRCKVQYFKHNNMQHLEELLRQQDE---RDTLNSKVTKKFIIVEGVYMNSADICPLK 237
+ ++ + ++ T I + + PL+
Sbjct: 90 GAMAVLSGVMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLE 149
Query: 238 DILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFC 297
+I + + + ++ + ++ + VG
Sbjct: 150 NIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVV 209
Query: 298 VGSSYIIEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLS 357
VG IE R + LA A AL + + +
Sbjct: 210 VGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIG 269
Query: 358 QHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSHLDQEA 417
D + L+ + +V + + +G S
Sbjct: 270 --------YSVNPEDVKTNMVILRTDNLKVNAHGF----IEALRNSGVLANAVSD----- 312
Query: 418 KKQKPSIRITCNISHTEQDMNSLIETL 444
IR+ + + D+ +
Sbjct: 313 ----TEIRLVTHKDVSRNDIEEALNIF 335
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 63.7 bits (153), Expect = 1e-11
Identities = 33/334 (9%), Positives = 93/334 (27%), Gaps = 20/334 (5%)
Query: 116 GPRGFYGTNVVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINF 175
G T +H + N + F+G + + + + + + K++ V +DEN ++
Sbjct: 38 GRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHY 97
Query: 176 AIQTGLIASRCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMN-SADIC 234
+ + + + + K + + + ++
Sbjct: 98 SSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLP 157
Query: 235 PLKDILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVG 294
+K I + S+Y + V+ + + G + + + F + G A
Sbjct: 158 DVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADF-------IVGSGHKSMAASGPI 210
Query: 295 GFCVGSSYIIEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLR----EKCN 350
G E Y + L+ + P + +++ E
Sbjct: 211 GVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEK 270
Query: 351 TMHSLLSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCP 410
K+ + L + L + + + + ++ K I
Sbjct: 271 ARRFAAEMEKLGIKQLGDNPHNHDLMFFHAEVLYE-ISKKAKGGRFFLYRELKSRKIHG- 328
Query: 411 SHLDQEAKKQKPSIRITCNISHTEQDMNSLIETL 444
K ++++++ ++
Sbjct: 329 ------IKPGLTRYFKLSTYGLSDEEVDYVLNAF 356
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 58.4 bits (140), Expect = 8e-10
Identities = 52/418 (12%), Positives = 108/418 (25%), Gaps = 61/418 (14%)
Query: 83 INFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGF---------YGTNVVHLDLEND 133
I + N D E ID + +G G+ + + + L
Sbjct: 27 IIKSGMNPFLL----DSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALAES 82
Query: 134 IASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENINFAI-------QTGLIASRC 186
+ + G + T G I +K+ + + T +
Sbjct: 83 VKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQIN 142
Query: 187 KVQ-----------------YFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMN 229
+ + +++ LE + + + I
Sbjct: 143 GCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNV---PYIVATITSNSAGGQ 199
Query: 230 SADICPLKDILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEV--------DM 281
+ LK + S+ KY + +D + EY + E++ DM
Sbjct: 200 PVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADM 259
Query: 282 IIGSLEHALGSVGGFCVGS-------SYIIEHHRLSGSGYCFSASLPPFLAVAANKALHL 334
+ S + G + Y + A+
Sbjct: 260 LAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY 319
Query: 335 LKANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQ 394
N L + + L + V + L D+ ++ L
Sbjct: 320 DGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALAC 379
Query: 395 TICDM-CIQAGFAITCPSHLDQEAKKQKPS----IRITCNI-SHTEQDMNSLIETLCK 446
+ + I+A + D + KQ P +R+T ++T+ M+ +IE
Sbjct: 380 ELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKH 437
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 52.9 bits (126), Expect = 5e-08
Identities = 41/360 (11%), Positives = 99/360 (27%), Gaps = 38/360 (10%)
Query: 121 YGTNVVHLDLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDAVFVDENI------- 173
Y + LE + G + G +K V +
Sbjct: 71 YAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQ 130
Query: 174 -------NFAIQTGLIASRCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGV 226
++ + + + ++ L L++++ + + + G
Sbjct: 131 EKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQ 190
Query: 227 YMNSADICPLKDILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEV------- 279
++ A++ + ++ S Y +IF D + Y VS +++
Sbjct: 191 PVSMANMRAVHEMA---STYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSY 247
Query: 280 -DMIIGSLEHALGSVGGF--CVGSSYIIEHHR-LSGSGYCFSASLPPFLAVAANKALHLL 335
D S + G C+ + + L + A+ L
Sbjct: 248 ADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLR 307
Query: 336 KA-NPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHR---DTPLKYLYLQKSDDEVASKK 391
+A + ++ + L + V GH D +L D A
Sbjct: 308 EAMQYEYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHL-TQDQFPAQSL 366
Query: 392 LLQTICDMCIQAGFAITCPSHLDQEAKKQKPS----IRITCNIS-HTEQDMNSLIETLCK 446
+ +++ + +E + +R+T +T M+ + + + K
Sbjct: 367 AASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIK 426
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 50.3 bits (119), Expect = 3e-07
Identities = 28/343 (8%), Positives = 89/343 (25%), Gaps = 31/343 (9%)
Query: 129 DLENDIASFMGLEETALYSFGFSTSASAIAA-------YVKRNDAVFVDENINFAIQTGL 181
L ++ G+ A + ++ + + + +
Sbjct: 98 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM 157
Query: 182 IASRCKVQYFK----HNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLK 237
+ + + + + ++ + + + + + + L+
Sbjct: 158 VTAGFEPVVIENVLEGDELRTDLKAVEAKIQELG--PEHILCLHSTTACFAPRV-PDRLE 214
Query: 238 DILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGS-VGGF 296
++ + + Y V+ + + G +D + SL+ VGG
Sbjct: 215 ELAVICANYDIPHVVNNAYGLQSSKCMHLIQ---QGARVGRIDAFVQSLDKNFMVPVGGA 271
Query: 297 CVGSSYIIEHHRLSGSGYCFSASLPPFLAVAANKAL--HLLKANPSLLTKLREKCNTMHS 354
+ +S +++ P + +L + ++ +T
Sbjct: 272 IIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLK 331
Query: 355 LLSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSHLD 414
L++ + + + L + A +L + + A+ +
Sbjct: 332 KLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQT 391
Query: 415 QEAKKQK-----------PSIRITCNISHTEQDMNSLIETLCK 446
+ + I QD++ I+ L K
Sbjct: 392 VSGHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDK 434
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 48.9 bits (115), Expect = 8e-07
Identities = 49/393 (12%), Positives = 95/393 (24%), Gaps = 77/393 (19%)
Query: 126 VHLDLENDIASFMGLEETALYSFGFSTS-ASAIAAYVKRNDAVFVDENINFAIQTGLIAS 184
+ E A ++T G S + + +A V D V D N + ++ +A
Sbjct: 67 PAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAM 126
Query: 185 RCKVQYFKHNNMQH----------------LEELLRQQDERDTLNSKVTKKFIIVEGVYM 228
+ N + EL + D + + +I G Y
Sbjct: 127 AGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYD 186
Query: 229 NSADICPLKDILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVS----TEEVDMIIG 284
I +++ I D + + + + +++
Sbjct: 187 G--TIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQ 244
Query: 285 SLEHALGSVGGFCV---------GSSYIIEHHRLSGSGYCFSASLPPF-----LAVAANK 330
S+ G +H + S F ++ P + L V A
Sbjct: 245 SVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAM 304
Query: 331 AL-----HLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRDTPLKYLYLQKSDD 385
L + R+K S+ + +V G + + + D
Sbjct: 305 QEGEAGRKLWHDLLITTIEARKKLIKAGSMF---RPFVPPVVNGKKWEDGDTEDMANNID 361
Query: 386 EVASKKLLQTICDMCIQAGFAITCPSHLD------------------------------- 414
+K + P+
Sbjct: 362 YWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHG 421
Query: 415 -QEAKKQKPSIRITCNISHTEQDMNSLIETLCK 446
K SI + T MN+LI L +
Sbjct: 422 IIPEKSDLNSILFLMTPAETPAKMNNLITQLLQ 454
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 47.9 bits (112), Expect = 1e-06
Identities = 35/372 (9%), Positives = 99/372 (26%), Gaps = 41/372 (11%)
Query: 81 PCINFATHNYLSFVENPDIEKCAIDCIDKNGVGSCGPRGFYGTNVVHLDLENDIASFMGL 140
P + F++ N +P++ + + YGT+ + ++
Sbjct: 3 PALGFSSDNIAGA--SPEVAQALVKHSSGQAGP-------YGTDELTAQVKRKFCEIFER 53
Query: 141 EETALY-SFGFSTSASAIAAYVKRNDAVFVDENINFAIQTGLIAS-----RCKVQYFKHN 194
+ G + +A ++A ++ + +
Sbjct: 54 DVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPA 113
Query: 195 NMQHLEELLRQQDERDTLNSKVTKKFII--VEGVYMNSADICPLKDILSLRSKYQARIFV 252
+ L + E+ + + + ++ I + + +
Sbjct: 114 AKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHM 173
Query: 253 DESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGS 312
D S L S G E + + G+ ++ + + + ++ +
Sbjct: 174 DGSRFANALVSLGCSPAEMTWKA-GVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRK 232
Query: 313 GYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRD 372
+S + + + L R+ L + V G +
Sbjct: 233 RAGHLSSKMR----FLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTE 288
Query: 373 TPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSHLDQEAKKQKPSIRITCNISH 432
+ + L D + ++AGF + +R + +
Sbjct: 289 ANILFCRL---DSAMIDA---------LLKAGFGFYHD-------RWGPNVVRFVTSFAT 329
Query: 433 TEQDMNSLIETL 444
T +D++ L+ +
Sbjct: 330 TAEDVDHLLNQV 341
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 46.1 bits (108), Expect = 5e-06
Identities = 34/329 (10%), Positives = 87/329 (26%), Gaps = 27/329 (8%)
Query: 129 DLENDIASFMGLEETALYSFGFSTSASAIAAYVKRNDA-----VFVDENINFAIQTGLIA 183
+ +GL A+ + ST S V + + +
Sbjct: 117 KILESFFKQLGLNVHAI-ATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSF 175
Query: 184 SRCKVQYFK--------HNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICP 235
++ + + ++ +E ++++ E ++ + +
Sbjct: 176 VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNR------PCVLSTLTFFPPRNSDD 229
Query: 236 LKDILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGG 295
+ +I + Y ++ + + VD ++ S + L + G
Sbjct: 230 IVEIAKICENYDIPHIINGAYAIQNNYYLEK----LKKAFKYRVDAVVSSSDKNLLTPIG 285
Query: 296 FCVGSSYIIEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSL 355
+ S E + Y AS P + + K L+ + + L
Sbjct: 286 GGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL 345
Query: 356 LSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSHLDQ 415
L+ + + E+A+K L + + +
Sbjct: 346 LNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAK--LYNLRVTGPRGIKKTDHFGNCYL 403
Query: 416 EAKKQKPSIRITCNISHTEQDMNSLIETL 444
I + I +D+ + + L
Sbjct: 404 GTYT-HDYIVMNAAIGVRTEDIVNSVSKL 431
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 43.0 bits (100), Expect = 6e-05
Identities = 42/391 (10%), Positives = 95/391 (24%), Gaps = 48/391 (12%)
Query: 104 IDCIDKNGVGSCGPRGF---------YGTNVVHLDLENDIASFMGLEETALYSFGFSTSA 154
ID + +G + + Y + + DL++ + G
Sbjct: 45 IDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRGAEN 104
Query: 155 SAIAAYVKRNDAV------------FVDENINFAIQTGLIASRCKVQYFKH-------NN 195
+K D G A +
Sbjct: 105 ILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKG 164
Query: 196 MQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRSKYQARIFVDES 255
+++L + N + + LK++ + ++ + +D +
Sbjct: 165 DFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA 224
Query: 256 VSFGTLGSTGHGVTEYFGVSTEEV--------DMIIGSLEHALGSVGGFCVGS-----SY 302
+Y + +EV D + S + G V +
Sbjct: 225 RFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIF 284
Query: 303 IIEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQHKVT 362
+ R + +AA L + + L + +
Sbjct: 285 TLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIP 344
Query: 363 QRFLVQGHR--DTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSHLDQEAKKQ 420
++ GH K + D A + + ++A + D +Q
Sbjct: 345 IQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQ 404
Query: 421 KP----SIRITCNI-SHTEQDMNSLIETLCK 446
K +R+T +T M+ + + L
Sbjct: 405 KHADMEFMRLTIARRVYTNDHMDYIADALIG 435
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 39.8 bits (92), Expect = 5e-04
Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 19/232 (8%)
Query: 221 IIVEGV----YMNSADICPLKDILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVST 276
I++E V ++ ++ + +L ++ + DE V G + E GV
Sbjct: 202 IVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADE-VQSGAGRTGTLFAMEQMGV-- 258
Query: 277 EEVDMIIGSLEHALGSVGGFCVGSSYIIEHHRLSGSGYCFSASLPPFLAVAANKALHLLK 336
D+ + A G G + +++ G G ++ + P VAA + L + +
Sbjct: 259 -APDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGN--PIACVAALEVLKVFE 315
Query: 337 ANPSLLTKLREKCNTMHSLLSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTI 396
L LL+ + + + D KL I
Sbjct: 316 QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEI 375
Query: 397 CDMCIQAGFAI-TCPSHLDQEAKKQKPSIRITCNISHTEQDMNSLIETLCKS 447
G + +C + + +RI ++ + + +E + +
Sbjct: 376 VARARDKGLILLSCGPYYN--------VLRILVPLTIEDAQIRQGLEIISQC 419
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 36.4 bits (82), Expect = 0.006
Identities = 28/326 (8%), Positives = 79/326 (24%), Gaps = 21/326 (6%)
Query: 121 YGTNVVHLDLENDIASFMGLEETALY--SFGFSTSASAIAAYVKRNDAVFVDENINFAIQ 178
YG + I + + ++ S G T+ A + ++ +AV + + +
Sbjct: 31 YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTH 90
Query: 179 TGLIASRCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKD 238
+ + + S+ +V K
Sbjct: 91 ETGAIEATGHKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQ 150
Query: 239 ILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGSVGGFCV 298
L S + + L S ++ + +
Sbjct: 151 ELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEA 210
Query: 299 GSSYIIEHHRLSGSGYCFSASLPPFLAVAANKALHLLKANPSLLTKLREKCNTMHSLLSQ 358
+ +L + + L+ +L +L N M ++L
Sbjct: 211 LIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLM--KDNLFFELGAHSNKMAAILKA 268
Query: 359 HKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSHLDQEAK 418
+ + + L ++ + ++ + +
Sbjct: 269 GLEACGIRLAWPSASNQLFPIL---ENTMIAE-----LNNDFDMYTVEPLKDGT------ 314
Query: 419 KQKPSIRITCNISHTEQDMNSLIETL 444
+R+ + + E++ + +E L
Sbjct: 315 ---CIMRLCTSWATEEKECHRFVEVL 337
>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE
{Bacillus cereus [TaxId: 1396]}
Length = 233
Score = 33.4 bits (76), Expect = 0.035
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 401 IQAGFAI-TCPSHLDQEAKKQKPSIRITCNISHTEQDMNSLIETLCKSHDIAVQ 453
A+ Q + + SI + + + L K++ I +
Sbjct: 119 TVEYLAVDMGALGDGQASDEYTVSICAKDSSGPYHYALRKHLVELAKTNHIEYK 172
>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 408
Score = 33.4 bits (75), Expect = 0.049
Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 6/154 (3%)
Query: 294 GGFCVGSSYIIEHHRLSGSGYCFSASLPPF-LAVAANKALHLLKAN--PSLLTKLREKCN 350
GG + + +H + F A P A+A A+ L ++ E +
Sbjct: 250 GGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTH 309
Query: 351 TMHSLLSQHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCP 410
+ L Q + + + + + + I++G T P
Sbjct: 310 YLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQP 369
Query: 411 SHLDQEAKKQKPSIRITCNISHTEQDMNSLIETL 444
H +A S R + +T+++++ +++L
Sbjct: 370 LHRLFDAS---GSARASLYFYNTKEEIDLFLQSL 400
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 32.2 bits (72), Expect = 0.13
Identities = 49/337 (14%), Positives = 103/337 (30%), Gaps = 43/337 (12%)
Query: 134 IASFMGLEETALYSFGFSTSASAIAA------YVKRNDAVFVDENINFAI---QTGLIAS 184
IA +G + + +T + +A Y K+ + + + A+ L
Sbjct: 57 IADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLERE 116
Query: 185 RCKVQYFKHNNMQHLEELLRQQDERDTLNSKVTKKFIIVEGVYMNSADICPLKDILSLRS 244
+V Y ++ ++ + + + V + + I +
Sbjct: 117 GFEVTYLAPQRNGIIDL----KELEAAMRDDT--ILVSIMHVNNEIGVVQDIAAIGEMCR 170
Query: 245 KYQARIFVDESVSFGTLGSTGHGVTEYFGVSTEEVDMIIGSLEHALGS--VGGFCVGSSY 302
VD + S G L +S +VD++ S G +G V
Sbjct: 171 ARGIIYHVDATQSVGKL---------PIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKP 221
Query: 303 IIEHHRLSGSGYCFSASLPPFLAVAANKAL-----HLLKANPSLLTKLREKCNTMHSLLS 357
+ G L V + + + + +LR N + + +
Sbjct: 222 RVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK 281
Query: 358 QHKVTQRFLVQGHRDTPLKYLYLQKSDDEVASKKLLQTICDMCIQAGFAITCPSH----- 412
+ H + + S + V + L+ + D+ + +G A T S
Sbjct: 282 DIEEVYLNGDLEHGAPNILNV----SFNYVEGESLIMALKDLAVSSGSACTSASLEPSYV 337
Query: 413 ---LDQEAKKQKPSIRITCNISHTEQDMNSLIETLCK 446
L + SIR + TE++++ IE + K
Sbjct: 338 LRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRK 374
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 30.1 bits (67), Expect = 0.50
Identities = 42/239 (17%), Positives = 77/239 (32%), Gaps = 41/239 (17%)
Query: 221 IIVEGVYMNSADICP----LKDILSLRSKYQARIFVDESVSFGTLGSTGHGVTEYFGVST 276
IVE + + I P L+ + + KY DE V G + ++ V
Sbjct: 190 FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADE-VQTGLGRTGKLLCVHHYNV-- 246
Query: 277 EEVDMIIGSLEHALGS---VGGFCVGSSYIIEHHRLSGSGYCFSAS-LPPFLAVAANKAL 332
+ D+I L AL + + I+ + G + + L + V A L
Sbjct: 247 -KPDVI--LLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVL 303
Query: 333 HLLKANPSLLTKLREKCNTMHSLLSQHK----VTQRFLVQGHRDTPLKYLYLQKSDDEVA 388
K + + L K V + L+ ++ ++ V
Sbjct: 304 INEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCA----------IEFKNELVN 353
Query: 389 SKKLLQTICDMCIQAGFAITCPSHLDQEAKKQKPSIRITCNISHTEQDMNSLIETLCKS 447
IC + G IT H +IR+T + T++ ++ E + K+
Sbjct: 354 VLD----ICLKLKENGL-ITRDVH--------DKTIRLTPPLCITKEQLDECTEIIVKT 399
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 28.8 bits (64), Expect = 1.2
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 19 LTLFIVLSLSLSKHKKHTINVDALINNWTPEPIVSKAEKFKDVSSKYVVDQKSGYIVNIN 78
L + +V ++L +K I+ D +T E + + +V Q S +N
Sbjct: 149 LKIGVVPVINLEWIQK--IHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQ 206
Query: 79 GIPCINFATHNYLSFVENPDIEKCAIDCIDKNGV 112
+P ++ + ++ D I + G+
Sbjct: 207 RVPVVDTSNPFIARWIPTADESVVVIRFRNPRGI 240
>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Escherichia coli [TaxId: 562]}
Length = 405
Score = 27.2 bits (59), Expect = 4.2
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 394 QTICDMCIQAGFAITCPSHLDQ---EAKKQKPSIRITCNISHTEQDMNSLIETL 444
+ G A+ H R + + +T ++++ L+ L
Sbjct: 344 YDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGL 397
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 26.9 bits (59), Expect = 5.0
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 388 ASKKLLQTICDMCIQAGFAITC--PSHLDQEAKKQKPSIRITCNISHTEQDMNS 439
S+K ++ + G C P H+ A +++ C I +
Sbjct: 17 LSEKEIEEFVLKSEELGIYAVCVNPYHVKL-ASSIAKKVKVCCVIGFPLGLNKT 69
>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp.
[TaxId: 1143]}
Length = 381
Score = 26.8 bits (57), Expect = 6.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 420 QKPSIRITCNISHTEQDMNSLIETL 444
IR C+ E+++N L+ L
Sbjct: 352 DPDCIRACCHYITDEEEINHLLARL 376
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core,
domain 1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 25.7 bits (56), Expect = 9.4
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 84 NFATHNYLSFVENPDIEKCAIDCIDKNGVGS-CGPRGFYGTN------VVHLDLENDIAS 136
+ AT +YL+ +PD E+ ++ +V + NDI+S
Sbjct: 72 HLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASRSRLRNAQEKMVYSLVSVPEGNDISS 131
Query: 137 FMGLEETAL 145
L+ T L
Sbjct: 132 IFELDPTTL 140
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.395
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,633,206
Number of extensions: 75620
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 26
Length of query: 457
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,199,356
Effective search space: 442562364
Effective search space used: 442562364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)