BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1545
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 143/353 (40%), Gaps = 76/353 (21%)
Query: 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVLQE 130
T + DP+ + V + Y TL + TGA+PR + + V T+R + +Q
Sbjct: 81 TAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQA 140
Query: 131 KLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190
L+ +++++G G I EL + H+S P +
Sbjct: 141 GLRPQSRLLIVGGGVIGLELAATARTAGV-------HVSLVETQP----------RLMSR 183
Query: 191 AKPETIFKRM-RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDT 249
A P T+ + RY+ + G D + ++ GS
Sbjct: 184 AAPATLADFVARYHA------AQGVDLRFERSVTGS------------------------ 213
Query: 250 CNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYA 309
+ V L +G A D+VV IGV+ N + LA D GI V+ +T+ +VYA
Sbjct: 214 VDGVVLLDDGTRIAADMVVVGIGVLANDALARAAG---LACDDGIFVDAYGRTTCPDVYA 270
Query: 310 AGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFF 369
GDV L+ ++ ++ W+ A++ G A+ +V +P ++ E+ + +
Sbjct: 271 LGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV-----DPTAPGYA-ELPWYFSDQG 324
Query: 370 GYKVILLGLFNGQTLENDYEILLRVTRGE------EYIKLVMKDGRMQGAVLI 416
++ + GL +G D EI+ RGE ++ + ++ GR+ GA +
Sbjct: 325 ALRIQVAGLASG-----DEEIV----RGEVSLDAPKFTLIELQKGRIVGATCV 368
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 143/353 (40%), Gaps = 76/353 (21%)
Query: 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVLQE 130
T + DP+ + V + Y TL + TGA+PR + + V T+R + +Q
Sbjct: 81 TAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQA 140
Query: 131 KLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190
L+ +++++G G I EL + H+S P +
Sbjct: 141 GLRPQSRLLIVGGGVIGLELAATARTAGV-------HVSLVETQP----------RLMSR 183
Query: 191 AKPETIFKRM-RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDT 249
A P T+ + RY+ + G D + ++ GS
Sbjct: 184 AAPATLADFVARYHA------AQGVDLRFERSVTGS------------------------ 213
Query: 250 CNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYA 309
+ V L +G A D+VV IGV+ N + LA D GI V+ +T+ +VYA
Sbjct: 214 VDGVVLLDDGTRIAADMVVVGIGVLANDALARAAG---LACDDGIFVDAYGRTTCPDVYA 270
Query: 310 AGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFF 369
GDV L+ ++ ++ W+ A++ G A+ +V +P ++ E+ + +
Sbjct: 271 LGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV-----DPTAPGYA-ELPWYWSDQG 324
Query: 370 GYKVILLGLFNGQTLENDYEILLRVTRGE------EYIKLVMKDGRMQGAVLI 416
++ + GL +G D EI+ RGE ++ + ++ GR+ GA +
Sbjct: 325 ALRIQVAGLASG-----DEEIV----RGEVSLDAPKFTLIELQKGRIVGATCV 368
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 56/250 (22%)
Query: 71 VIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVA 126
+I D + +ID ++ I+Y L + TGA R + P V+ +R D
Sbjct: 74 LISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESE 133
Query: 127 VLQEKLKSAKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQ 182
VL++++ K +VVIG G I E VD+V + + A + P + +F
Sbjct: 134 VLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELA--PRVMARVVTPEISSYFH 191
Query: 183 DSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERI 242
D R++ G + +H R T+I + E +R+
Sbjct: 192 D-----------------RHSGAG-------------IRMHYGVRATEI----AAEGDRV 217
Query: 243 VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302
V L++G+T CD+VV +GV+PN I A GI V++ + T
Sbjct: 218 TG---------VVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPTAA---GIIVDQQLLT 265
Query: 303 SISNVYAAGD 312
S ++ A GD
Sbjct: 266 SDPHISAIGD 275
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 256 LTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+T+ + + D+VV A+GV PN+ + GT EL P+ I +E M+TS +V+A GD
Sbjct: 227 VTDKNAYDADLVVVAVGVRPNT-AWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATL 284
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355
++ A + L T A+ G +A K + VK P +Q
Sbjct: 285 IKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQ 324
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 256 LTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+T+ + + D+VV A+GV PN+ + GT EL P+ I +E M+TS +V+A GD
Sbjct: 227 VTDKNAYDADLVVVAVGVRPNT-AWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATL 284
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355
++ A + L T A+ G +A K + VK P +Q
Sbjct: 285 IKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQ 324
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 256 LTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+T+ + + D+VV A+GV PN+ + GT EL P+ I +E M+TS +V+A GD
Sbjct: 227 VTDKNAYDADLVVVAVGVRPNT-AWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATL 284
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355
++ A + L T A+ G +A K + VK P +Q
Sbjct: 285 IKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQ 324
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 256 LTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+T+ + + D+VV A+GV PN+ + GT EL P+ I +E M+TS +V+A GD
Sbjct: 227 VTDKNAYDADLVVVAVGVRPNT-AWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATL 284
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355
++ A + L T A+ G +A K + VK P +Q
Sbjct: 285 IKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQ 324
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 256 LTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+T+ + + D+VV A+GV PN+ + GT EL P+ I +E M+TS +V+A GD
Sbjct: 227 VTDKNAYDADLVVVAVGVRPNT-AWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATL 284
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355
++ A + L T A+ G +A K + VK P +Q
Sbjct: 285 IKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQ 324
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 256 LTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+T+ + + D+VV A+GV PN+ + GT EL P+ I +E M+TS +V+A GD
Sbjct: 227 VTDKNAYDADLVVVAVGVRPNT-AWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATL 284
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355
++ A + L T A G +A K + VK P +Q
Sbjct: 285 IKYNPADTEVNIALATNAMKQGRFAVKNLEEPVKPFPGVQ 324
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 133/377 (35%), Gaps = 54/377 (14%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIXXXXXXXXXXXXLLSDITVEE-----T 60
+I+G G+AGV GL +I LV + + L T E
Sbjct: 8 VIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTP 67
Query: 61 DANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVIT-- 118
DA + + + V AI+ VI + Y L + TG PR + + +
Sbjct: 68 DAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKA 127
Query: 119 -----IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFL 173
+R + ++ +L + ++VVIG G I E V + + H+ T L
Sbjct: 128 NNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLE-------VAATAIKANMHV--TLL 178
Query: 174 DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
D A + + TA P + F +LH R+ + I
Sbjct: 179 DTAA------RVLERVTAPPVSAFYE---------------------HLH---REAGVDI 208
Query: 234 EYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG 293
+V S D V +G D+V++ IG++PN + + L D G
Sbjct: 209 RTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCEL---ASAAGLQVDNG 265
Query: 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353
I +NE MQTS + A GD L +W ++ A A + G V +
Sbjct: 266 IVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVPRDEA 325
Query: 354 IQDFSFEMFTHMTKFFG 370
F + + K G
Sbjct: 326 APWFWSDQYEIGLKMVG 342
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 133/377 (35%), Gaps = 54/377 (14%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIXXXXXXXXXXXXLLSDITVEE-----T 60
+I+G G+AGV GL +I LV + + L T E
Sbjct: 7 VIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTP 66
Query: 61 DANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVIT-- 118
DA + + + V AI+ VI + Y L + TG PR + + +
Sbjct: 67 DAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKA 126
Query: 119 -----IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFL 173
+R + ++ +L + ++VVIG G I E V + + H+ T L
Sbjct: 127 NNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLE-------VAATAIKANMHV--TLL 177
Query: 174 DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
D A + + TA P + F +LH R+ + I
Sbjct: 178 DTAA------RVLERVTAPPVSAFYE---------------------HLH---REAGVDI 207
Query: 234 EYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG 293
+V S D V +G D+V++ IG++PN + + L D G
Sbjct: 208 RTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCEL---ASAAGLQVDNG 264
Query: 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353
I +NE MQTS + A GD L +W ++ A A + G V +
Sbjct: 265 IVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVPRDEA 324
Query: 354 IQDFSFEMFTHMTKFFG 370
F + + K G
Sbjct: 325 APWFWSDQYEIGLKMVG 341
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 105/279 (37%), Gaps = 52/279 (18%)
Query: 76 VAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI------WYSPHVITIRDTDSVAVLQ 129
V ++DP + V + I+Y L TG PR++ H + ++ D+ ++
Sbjct: 88 VVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKE-DADRLMA 146
Query: 130 EKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189
E AK VVIG G I E AA + +N T
Sbjct: 147 ELDAGAKNAVVIGGGYIGLE--------------------------AAAVLTKFGVNVTL 180
Query: 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDT 249
+ R+ G +L + + HG D + C +E D T
Sbjct: 181 LEALPRVLARV-------AGEALSEFYQAEHRAHGV--DLRTGAAMDC-IE-----GDGT 225
Query: 250 CNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYA 309
V++ +G DIV+ IG+VP + + G+ V+E +TS+++VYA
Sbjct: 226 KVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGA---SGGNGVDVDEFCRTSLTDVYA 282
Query: 310 AGDVCTPSWDLAK-QWFQMRLWTQAKHMGTYAAKCMVGA 347
GD + D A ++ A M T AAK + GA
Sbjct: 283 IGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGA 321
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 23/143 (16%)
Query: 256 LTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGV--------NELMQTSISNV 307
+T+ + ++V+ A G+ PN ELA G+ + NE MQTS+ NV
Sbjct: 225 VTDAGEYKAELVILATGIKPN---------IELAKQLGVRIGETGAIWTNEKMQTSVENV 275
Query: 308 YAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTK 367
YAAGDV + + + L MG A + G + P + + T +TK
Sbjct: 276 YAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGV------LGTAVTK 329
Query: 368 FFGYKVILLGLFNGQTLENDYEI 390
F ++ GL + L+ Y++
Sbjct: 330 FMDVEIGKTGLTEMEALKEGYDV 352
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 223 HGSSRDTKITI-------EYSCEVERIVDSE---DDTCNAYVK------LTNGHTHACDI 266
H + RD + + E S +V+ V S+ +DT + ++K L+NG D+
Sbjct: 199 HQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDL 258
Query: 267 VVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQ 326
++ AIGV P + + + GI VN +MQTS +YA GD + Q
Sbjct: 259 LIMAIGVRPETQL-ARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACL 317
Query: 327 MRLWTQAKHMGTYAAKCMVG 346
+ L A G AA M G
Sbjct: 318 VPLAGPANRQGRMAADNMFG 337
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+V +G T D+V+ AIG +P +N +Q+ +L P G+ V+E +T++ N+YA G
Sbjct: 267 HVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIG 326
Query: 312 DV 313
D+
Sbjct: 327 DI 328
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme M
Oxidoreductase Carboxylase With A Coenzyme M Disulfide
Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed Disulfide
Between Coenzyme M And Nadph-Dependent Oxidoreductase 2-
Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 29/184 (15%)
Query: 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NGHTH-ACDIVVSAIG 272
D T+ + ++ + I V RI + + A V +T NG D V +G
Sbjct: 254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 313
Query: 273 VVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQ 332
P S +L P + VNE +QTS+ NVYA GD+ ++ K
Sbjct: 314 EQPRSAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFK---------- 363
Query: 333 AKHMGTYAAKCMVG-----AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND 387
A+ G YAA+ ++G KN P DF + TH Y+V LG+ +
Sbjct: 364 ARKSGCYAARNVMGEKISYTPKNYP---DF---LHTH------YEVSFLGMGEEEARAAG 411
Query: 388 YEIL 391
+EI+
Sbjct: 412 HEIV 415
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+V +G T D+V+ AIG +P +N +Q+ +L P G+ V+E +T++ N+YA G
Sbjct: 270 HVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIG 329
Query: 312 DV 313
D+
Sbjct: 330 DI 331
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 257 TNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTP 316
T+ T+ D+V+ ++GV PN++ + GT I VN MQT++ +VYAAGD C
Sbjct: 264 TDKGTYKADLVLVSVGVKPNTDF-LEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGD-CAT 321
Query: 317 SWDLAKQWF-QMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVIL 375
+ + K+ + + T A G A M+ + F + T + KF +
Sbjct: 322 HYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRA------FKGTLGTGIIKFMNLTLAR 375
Query: 376 LGL 378
GL
Sbjct: 376 TGL 378
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 57/230 (24%)
Query: 91 QNRIKYKTLCICTGASPRKIWY----SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146
+ ++Y+ L + GA P ++ + I D + A ++ ++++++G G I
Sbjct: 97 EEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLI 156
Query: 147 ATELVHELSN----VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRY 202
E ++LS+ +D+V + + L P AA+ Q + +R+
Sbjct: 157 GCEFANDLSSGGYQLDVV--APCEQVMPGLLHPAAAKAVQAGLEGLG----------VRF 204
Query: 203 NTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTH 262
+ LGP + S + +E L++G
Sbjct: 205 H--------LGP-------VLASLKKAGEGLE-------------------AHLSDGEVI 230
Query: 263 ACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
CD+VVSA+G+ P + + LA + GI V+ ++TS +N+YA GD
Sbjct: 231 PCDLVVSAVGLRPRTELAFAAG---LAVNRGIVVDRSLRTSHANIYALGD 277
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ +G D+++ +G PNS + + +L I VN+ +T++ N+YA GD+
Sbjct: 219 ITFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDRKGFIPVNDKFETNVPNIYAIGDI 277
Query: 314 CTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKV 373
T + + L A + A+ + G N+ + +F + ++ KFF Y
Sbjct: 278 ATSHYRHVDLPASVPLAWGAHRAASIVAEQIAG---NDTI--EFKGFLGNNIVKFFDYTF 332
Query: 374 ILLGLFNGQTLENDYEILLRVTRG 397
+G+ + + DY+ ++ VT+G
Sbjct: 333 ASVGVKPNELKQFDYK-MVEVTQG 355
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ +G D+++ +G PNS + + +L I VN+ +T++ N+YA GD+
Sbjct: 219 ITFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDRKGFIPVNDKFETNVPNIYAIGDI 277
Query: 314 CTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKV 373
T + + L A + A+ + G N+ + +F + ++ KFF Y
Sbjct: 278 ATSHYRHVDLPASVPLAWGAHRAASIVAEQIAG---NDTI--EFKGFLGNNIVKFFDYTF 332
Query: 374 ILLGLFNGQTLENDYEILLRVTRG 397
+G+ + + DY+ ++ VT+G
Sbjct: 333 ASVGVKPNELKQFDYK-MVEVTQG 355
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ +G D+++ +G PNS + + +L I VN+ +T++ N+YA GD+
Sbjct: 219 ITFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDRKGFIPVNDKFETNVPNIYAIGDI 277
Query: 314 CTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKV 373
T + + L A + A+ + G N+ + +F + ++ KFF Y
Sbjct: 278 ATSHYRHVDLPASVPLAWGAHRAASIVAEQIAG---NDTI--EFKGFLGNNIVKFFDYTF 332
Query: 374 ILLGLFNGQTLENDYEILLRVTRG 397
+G+ + + DY+ ++ VT+G
Sbjct: 333 ASVGVKPNELKQFDYK-MVEVTQG 355
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ +G D+++ +G PNS + + +L I VN+ +T++ N+YA GD+
Sbjct: 220 ITFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDRKGFIPVNDKFETNVPNIYAIGDI 278
Query: 314 CTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKV 373
T + + L A + A+ + G N+ + +F + ++ KFF Y
Sbjct: 279 ATSHYRHVDLPASVPLAWGAHRAASIVAEQIAG---NDTI--EFKGFLGNNIVKFFDYTF 333
Query: 374 ILLGLFNGQTLENDYEILLRVTRG 397
+G+ + + DY+ ++ VT+G
Sbjct: 334 ASVGVKPNELKQFDYK-MVEVTQG 356
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ +G D+++ +G PNS + + +L I VN+ +T++ N+YA GD+
Sbjct: 219 ITFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDRKGFIPVNDKFETNVPNIYAIGDI 277
Query: 314 CTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKV 373
T + + L A + A+ + G N+ + +F + ++ KFF Y
Sbjct: 278 ATSHYRHVDLPASVPLAWGAHRAASIVAEQIAG---NDTI--EFKGFLGNNIVKFFDYTF 332
Query: 374 ILLGLFNGQTLENDYEILLRVTRG 397
+G+ + + DY+ ++ VT+G
Sbjct: 333 ASVGVKPNELKQFDYK-MVEVTQG 355
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ +G D+++ +G PNS + + +L I VN+ +T++ N+YA GD+
Sbjct: 219 ITFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDRKGFIPVNDKFETNVPNIYAIGDI 277
Query: 314 CTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKV 373
T + + L A + A+ + G N+ + +F + ++ KFF Y
Sbjct: 278 ATSHYRHVDLPASVPLAWGAHRAASIVAEQIAG---NDTI--EFKGFLGNNIVKFFDYTF 332
Query: 374 ILLGLFNGQTLENDYEILLRVTRG 397
+G+ + + DY+ ++ VT+G
Sbjct: 333 ASVGVKPNELKQFDYK-MVEVTQG 355
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ +G D+++ +G PNS + + +L I VN+ +T++ N+YA GD+
Sbjct: 219 ITFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDRKGFIPVNDKFETNVPNIYAIGDI 277
Query: 314 CTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKV 373
T + + L A + A+ + G N+ + +F + ++ KFF Y
Sbjct: 278 ATSHYRHVDLPASVPLAWGAHRAASIVAEQIAG---NDTI--EFKGFLGNNIVKFFDYTF 332
Query: 374 ILLGLFNGQTLENDYEILLRVTRG 397
+G+ + + DY+ ++ VT+G
Sbjct: 333 ASVGVKPNELKQFDYK-MVEVTQG 355
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 257 TNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
T+ T+ D+V+ ++GV PN++ + GT I VN QT++ +VYAAGD T
Sbjct: 264 TDKGTYKADLVLVSVGVKPNTDF-LEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCAT 321
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 29/160 (18%)
Query: 267 VVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQ 326
V++A+GV PN + + T E+A GI VN+ M+TSI ++YA GDV +++
Sbjct: 223 VITAVGVKPNLDF-IKDT--EIASKRGILVNDHMETSIKDIYACGDVA--------EFYG 271
Query: 327 MR--LWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMF--THMTKFFGYKVILLGLFNGQ 382
L A G A G +D S+ + + K G +I G
Sbjct: 272 KNPGLINIANKQGEVAGLNACG--------EDASYSEIIPSPILKVSGISIISCG----- 318
Query: 383 TLENDY-EILLRVTRGEEYIKLVMKDGRMQGAVLIGETEI 421
+EN+ + R T+ ++YI ++K+ ++ A +IG+ +
Sbjct: 319 DIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAVIGDVSL 358
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 52 LSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW 111
+ DI +++ D + + + + +IDP V + +IKY+ L I +G+ KI
Sbjct: 61 IDDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIK 120
Query: 112 YSPHV 116
PH
Sbjct: 121 V-PHA 124
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 234 EYSCEVERIVDSE---DDTCNAYVK------LTNGHTHACDIVVSAIGVVPNSNIQVHGT 284
E S +V+ V S+ +DT + ++K L+NG D+++ AIGV P + +
Sbjct: 217 EVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQL-ARDA 275
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCM 344
+ GI VN QTS +YA GD + Q + L A G AA
Sbjct: 276 GLAIGELGGIKVNAXXQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRXAADNX 335
Query: 345 VG 346
G
Sbjct: 336 FG 337
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 17/140 (12%)
Query: 223 HGSSRDTKITI-------EYSCEVERIVDSE---DDTCNAYVK------LTNGHTHACDI 266
H + RD + + E S +V+ V S+ +DT + ++K L+NG D+
Sbjct: 199 HQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDL 258
Query: 267 VVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQ 326
++ AIGV P + + + GI VN QTS +YA GD + Q
Sbjct: 259 LIXAIGVRPETQL-ARDAGLAIGELGGIKVNAXXQTSDPAIYAVGDAVEEQDFVTGQACL 317
Query: 327 MRLWTQAKHMGTYAAKCMVG 346
+ L A G AA G
Sbjct: 318 VPLAGPANRQGRXAADNXFG 337
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 240 ERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL 299
E++V E + +T+ T D+V+ A GV PN+ + EL P I V+
Sbjct: 223 EKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQL-ARDAGLELDPRGAIIVDTR 281
Query: 300 MQTSISNVYAAGDVCT-PSWDLAKQWFQMRLWTQAKHMG 337
M+TS +++A GD T P+ K F L + A G
Sbjct: 282 MRTSDPDIFAGGDCVTIPNLVTGKPGF-FPLGSMANRQG 319
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 84/225 (37%), Gaps = 55/225 (24%)
Query: 96 YKTLCICTGASP-----RKIWYSPHVITIR---DTDSVAVLQEKLKSAKKIVVIGNGGIA 147
Y L + GA P I + + T+R DTD + ++ K + VIG G I
Sbjct: 141 YDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDE-KKPRHATVIGGGFIG 199
Query: 148 TELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGE 207
E V L +++ I T + N P ++ Y
Sbjct: 200 VEXVENL---------RERGIEVTL------------VEXANQVXPPIDYEXAAY----- 233
Query: 208 KGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIV 267
V+ H + D ++ E VD+ ++ A V+L +G D +
Sbjct: 234 ------------VHEHXKNHDVELVFEDG------VDALEEN-GAVVRLKSGSVIQTDXL 274
Query: 268 VSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
+ AIGV P S++ G L I VNE QTS ++YA GD
Sbjct: 275 ILAIGVQPESSL-AKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 88/225 (39%), Gaps = 47/225 (20%)
Query: 94 IKYKTLCICTGASPRKIWYSPHVITIRDT--DSVAVLQEKLKSAKKIVVIGNGGIATEL- 150
I K + I TG+ ++ P + DT S L K K +K+VVIG G I EL
Sbjct: 160 IDTKNILIATGS---EVTPFPGITIDEDTIVSSTGALSLK-KVPEKMVVIGAGVIGVELG 215
Query: 151 -VHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG 209
V + D+ V H+ +D ++ FQ + K FK + NT
Sbjct: 216 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG-------FK-FKLNT----- 262
Query: 210 PSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269
+ G+++ + I+ S E +E TC D+++
Sbjct: 263 -----------KVTGATKKSDGKIDVSIEAASGGKAEVITC--------------DVLLV 297
Query: 270 AIGVVP-NSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
IG P N+ + EL P I VN QT I N+YA GDV
Sbjct: 298 CIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDV 342
>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
pdb|3O0H|B Chain B, Crystal Structure Of Glutathione Reductase From Bartonella
Henselae
Length = 484
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 20/92 (21%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAY-VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELA 289
I+I Y V ++ +E N Y V LTNG T D V+ A G VPN+ G E A
Sbjct: 247 ISIIYEATVSQVQSTE----NCYNVVLTNGQTICADRVMLATGRVPNTT----GLGLERA 298
Query: 290 PDCGIGVNEL--------MQTSISNVYAAGDV 313
G+ VNE M T++S+++A GDV
Sbjct: 299 ---GVKVNEFGAVVVDEKMTTNVSHIWAVGDV 327
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 88/225 (39%), Gaps = 47/225 (20%)
Query: 94 IKYKTLCICTGASPRKIWYSPHVITIRDT--DSVAVLQEKLKSAKKIVVIGNGGIATEL- 150
I K + I TG+ ++ P + DT S L K K +K+VVIG G I EL
Sbjct: 139 IDTKNILIATGS---EVTPFPGITIDEDTIVSSTGALSLK-KVPEKMVVIGAGVIGVELG 194
Query: 151 -VHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG 209
V + D+ V H+ +D ++ FQ + K FK + NT
Sbjct: 195 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG-------FK-FKLNT----- 241
Query: 210 PSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269
+ G+++ + I+ S E +E TC D+++
Sbjct: 242 -----------KVTGATKKSDGKIDVSIEAASGGKAEVITC--------------DVLLV 276
Query: 270 AIGVVP-NSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
IG P N+ + EL P I VN QT I N+YA GDV
Sbjct: 277 CIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDV 321
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 88/225 (39%), Gaps = 47/225 (20%)
Query: 94 IKYKTLCICTGASPRKIWYSPHVITIRDT--DSVAVLQEKLKSAKKIVVIGNGGIATEL- 150
I K + I TG+ ++ P + DT S L K K +K+VVIG G I EL
Sbjct: 139 IDTKNILIATGS---EVTPFPGITIDEDTIVSSTGALSLK-KVPEKMVVIGAGVIGVELG 194
Query: 151 -VHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG 209
V + D+ V H+ +D ++ FQ + K FK + NT
Sbjct: 195 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG-------FK-FKLNT----- 241
Query: 210 PSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269
+ G+++ + I+ S E +E TC D+++
Sbjct: 242 -----------KVTGATKKSDGKIDVSIEAASGGKAEVITC--------------DVLLV 276
Query: 270 AIGVVP-NSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
IG P N+ + EL P I VN QT I N+YA GDV
Sbjct: 277 CIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDV 321
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+V +G D+V+ AIG VP S +Q+ E+A + I V+ +T++ N+YA G
Sbjct: 266 HVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIG 325
Query: 312 DV 313
DV
Sbjct: 326 DV 327
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+V +G D+V+ AIG VP S +Q+ E+A + I V+ +T++ N+YA G
Sbjct: 266 HVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIG 325
Query: 312 DV 313
DV
Sbjct: 326 DV 327
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 86/223 (38%), Gaps = 34/223 (15%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHG---TPFE 287
+TI + +VE I D K + V+ AIG PN ++ +G
Sbjct: 229 VTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN--VEGYGLDKAGVA 286
Query: 288 LAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347
L IGV++ M+T++ ++YA GDV ++L A+ G AA+ + GA
Sbjct: 287 LTDRKAIGVDDYMRTNVGHIYAIGDVNG----------LLQLAHVAEAQGVVAAETIAGA 336
Query: 348 VKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VT 395
+ M T F V GL Q Y++++ V
Sbjct: 337 ----ETLTLGDHRMLPRAT-FCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVG 391
Query: 396 RGEEYIKLV--MKDGRMQGAVLIGETEIEEMCENLILNQLDLT 436
++KLV K G + G L+G E + E + + DLT
Sbjct: 392 DPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLT 434
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+V +G D+V+ AIG VP S +Q+ E+A + I V+ +T++ N+YA G
Sbjct: 267 HVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIG 326
Query: 312 DV 313
DV
Sbjct: 327 DV 328
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+V +G D+V+ AIG VP S +Q+ E+A + I V+ +T++ N+YA G
Sbjct: 267 HVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIG 326
Query: 312 DV 313
DV
Sbjct: 327 DV 328
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 141/367 (38%), Gaps = 78/367 (21%)
Query: 67 GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPR--KIWYSPHVITIRDTDS 124
G+ + + ID VITEK + Y TL + TGA R +I +++T+R
Sbjct: 74 GIEIRLAEEAKLIDRGRKVVITEK-GEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFD 132
Query: 125 VAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDS 184
++E ++++ + ++IG G I EL L+ + VK H A FL G E +
Sbjct: 133 ADRIKESIENSGEAIIIGGGFIGLELAGNLAEAG--YHVKLIHRGAMFL--GLDEELSNM 188
Query: 185 INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVD 244
I K M TG V+ ++
Sbjct: 189 I------------KDMLEETG---------------------------------VKFFLN 203
Query: 245 SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSI 304
SE N LTN + + AIG+VPN ++ + GI +++ +TS
Sbjct: 204 SELLEANEEGVLTNSGFIEGKVKICAIGIVPNVDLARRSG---IHTGRGILIDDNFRTSA 260
Query: 305 SNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTH 364
+VYA GD S +A A+ + +K EP + ++F+ +
Sbjct: 261 KDVYAIGDCAEYSGIIA----------GTAKAAMEQARVLADILKGEP--RRYNFKFRST 308
Query: 365 MTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIEEM 424
+ KF ++ ++G G+ E+ K+ ++G++ GAV+ +
Sbjct: 309 VFKFGKLQIAIIGNTKGEG-----------KWIEDNTKVFYENGKIIGAVVFNDIRKATK 357
Query: 425 CENLILN 431
E IL+
Sbjct: 358 LEKEILD 364
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 256 LTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+T+ + + D+V+ A+G PN+ + +L + VN+ +TSI VYA GD T
Sbjct: 272 ITDKNEYDVDMVILAVGFRPNTTL--GNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCAT 329
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
+ + + L + A G AA G
Sbjct: 330 IYDNATRDTNYIALASNAVRTGIVAAHNACG 360
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 103/292 (35%), Gaps = 50/292 (17%)
Query: 67 GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW--------YSPHVIT 118
G+ + V +D R N V ++I Y+ I TG +PR +
Sbjct: 104 GVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTL 163
Query: 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAA 178
R L++ + K I +IG G + +EL L A L
Sbjct: 164 FRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGR------------KARALGTEVI 211
Query: 179 EFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCE 238
+ F + N G+ P +W + R + + +
Sbjct: 212 QLFPEKGNM------------------GKILPEYLSNWTME-----KVRREGVKVMPNAI 248
Query: 239 VERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDC-GIGVN 297
V+ + S + +KL +G D +V+A+G+ PN + G E+ D G VN
Sbjct: 249 VQSVGVS---SGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGG-LEIDSDFGGFRVN 304
Query: 298 ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349
+Q SN++ AGD +D+ ++ A G A + M GA K
Sbjct: 305 AELQAR-SNIWVAGDAAC-FYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK 354
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 256 LTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+T+ + + D+V+ A+G PN+ + +L + VN+ +TSI VYA GD T
Sbjct: 272 ITDKNEYDVDMVILAVGFRPNTTL--GNGKIDLFRNGAFLVNKRQETSIPGVYAIGDCAT 329
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
+ + + L + A G AA G
Sbjct: 330 IYDNATRDTNYIALASNAVRTGIVAAHNACG 360
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 76 VAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEK 131
V A+D + + + + + I TG+ R + P V+T+R V VL++
Sbjct: 80 VTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDS 139
Query: 132 LKSAKKIVVIGNGGIATEL 150
SA +++++G G I E+
Sbjct: 140 WTSATRLLIVGGGLIGCEV 158
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 106/292 (36%), Gaps = 50/292 (17%)
Query: 67 GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW--------YSPHVIT 118
G+ + V +D R N V ++I Y+ I TG +PR +
Sbjct: 122 GVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTL 181
Query: 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAA 178
R L++ + K I +IG G + +EL L A L
Sbjct: 182 FRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGR------------KARALGTEVI 229
Query: 179 EFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCE 238
+ F + K N K + P++ + + R+ + + +
Sbjct: 230 QLFPE---KGNMGK-------------------ILPEYLSNWTMEKVRREG-VKVMPNAI 266
Query: 239 VERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPD-CGIGVN 297
V+ + S + +KL +G D +V+A+G+ PN + G E+ D G VN
Sbjct: 267 VQSVGVS---SGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGG-LEIDSDFGGFRVN 322
Query: 298 ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349
+Q SN++ AGD +D+ ++ A G A + M GA K
Sbjct: 323 AELQAR-SNIWVAGDAAC-FYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK 372
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELA 289
I + + +I +ED + +V +G D V+ AIG VP S +Q+
Sbjct: 267 IRVRTNLNPTKITKNEDGS--NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTG 324
Query: 290 PDCGIGVNELMQTSISNVYAAGDV 313
+ + V+ +TS+ N+YA GDV
Sbjct: 325 KNGAVQVDAYSKTSVDNIYAIGDV 348
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELA 289
I + + +I +ED + +V +G D V+ AIG VP S +Q+
Sbjct: 267 IRVRTNLNPTKITKNEDGS--NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTG 324
Query: 290 PDCGIGVNELMQTSISNVYAAGDV 313
+ + V+ +TS+ N+YA GDV
Sbjct: 325 KNGAVQVDAYSKTSVDNIYAIGDV 348
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
V +G D+V+ AIG P + ++Q+ + + G+ V+E +T++SN+YA GD
Sbjct: 268 VTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGV-MIKNGGVQVDEYSRTNVSNIYAIGD 326
Query: 313 V 313
V
Sbjct: 327 V 327
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
V +G D+V+ AIG P + ++Q+ + + G+ V+E +T++SN+YA GD
Sbjct: 268 VTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGV-MIKNGGVQVDEYSRTNVSNIYAIGD 326
Query: 313 V 313
V
Sbjct: 327 V 327
>pdb|3BMA|A Chain A, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|B Chain B, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|C Chain C, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|D Chain D, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|E Chain E, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
pdb|3BMA|F Chain F, Crystal Structure Of D-Alanyl-Lipoteichoic Acid Synthetase
From Streptococcus Pneumoniae R6
Length = 407
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 126 AVLQEKLKSAKKIVVIGNGGIAT--------ELVHELSNVDIVWVVKDKHISATFLDPGA 177
AVL EK + + ++G GG A+ +++ +L N +V+V+ + S DP A
Sbjct: 61 AVLAEKYNRSYRPYLLGQGGAASLNQYFGMQQMLPQLENKQVVYVISPQWFSKNGYDPAA 120
Query: 178 AEFFQDSIN 186
FQ N
Sbjct: 121 ---FQQYFN 126
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
V +G D+V+ AIG P + ++Q+ + + G+ V+E +T++SN+YA GD
Sbjct: 269 VTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGV-MIKNGGVQVDEYSRTNVSNIYAIGD 327
Query: 313 V 313
V
Sbjct: 328 V 328
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
V +G D+V+ AIG P + ++Q+ + + G+ V+E +T++SN+YA GD
Sbjct: 267 VTFESGKKMDFDLVMMAIGRSPRTKDLQLQNAGV-MIKNGGVQVDEYSRTNVSNIYAIGD 325
Query: 313 V 313
V
Sbjct: 326 V 326
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 62/312 (19%), Positives = 111/312 (35%), Gaps = 59/312 (18%)
Query: 76 VAAIDP-----RVNCVITEKQNRIKYKTLCICTGASPRKIWY----SPHVITIRDTDSVA 126
V +DP +V +IT ++ Y L + TG+ P S V ++ +
Sbjct: 81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAK 140
Query: 127 VLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSIN 186
L E+ AK I +IG+G I EL SN + + D H + ++F
Sbjct: 141 KLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY------KYFDKEFT 194
Query: 187 KTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSE 246
L D+ HG + + +V + +
Sbjct: 195 DI-----------------------LAKDYEA----HG------VNLVLGSKVAAFEEVD 221
Query: 247 DDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306
D+ K +G DI + IG PN+ ++ + + I +E M +S +
Sbjct: 222 DEII---TKTLDGKEIKSDIAILCIGFRPNT--ELLKGKVAMLDNGAIITDEYMHSSNRD 276
Query: 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMT 366
++AAGD ++ + L T A G +VG E ++D + + +
Sbjct: 277 IFAAGDSAAVHYNPTNSNAYIPLATNAVRQGR-----LVGLNLTEDKVKDMGTQSSSGL- 330
Query: 367 KFFGYKVILLGL 378
K +G + G+
Sbjct: 331 KLYGRTYVSTGI 342
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPD-CGIGVNELMQTSISNVYAAGD 312
+KL +G D +V+A+G+ PN + G E+ D G VN +Q SN++ AGD
Sbjct: 279 IKLKDGRKVETDHIVTAVGLEPNVELAKTGG-LEIDSDFGGFRVNAELQAR-SNIWVAGD 336
Query: 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349
+D+ ++ A G A + M GA K
Sbjct: 337 AAC-FYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK 372
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 67 GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW--------YSPHVIT 118
G+ + V +D R N V ++I ++ I TG +PR +
Sbjct: 122 GVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTL 181
Query: 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELV------HELSNVDIVWVVKDK 166
R L++ + K I VIG G + +EL + S ++++ + +K
Sbjct: 182 FRKIGDFRALEKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQLFPEK 235
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPD-CGIGVNELMQTSISNVYAAGD 312
+KL +G D +V+A+G+ PN + G E+ D G VN +Q SN++ AGD
Sbjct: 303 IKLKDGRKVETDHIVTAVGLEPNVELAKTGG-LEIDSDFGGFRVNAELQAR-SNIWVAGD 360
Query: 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349
+D+ ++ A G A + M GA K
Sbjct: 361 AAC-FYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK 396
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 67 GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW--------YSPHVIT 118
G+ + V +D R N V ++I ++ I TG +PR +
Sbjct: 146 GVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTL 205
Query: 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELV------HELSNVDIVWVVKDK 166
R L++ + K I VIG G + +EL + S ++++ + +K
Sbjct: 206 FRKIGDFRALEKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQLFPEK 259
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPD-CGIGVNELMQTSISNVYAAGD 312
+KL +G D +V+A+G+ PN + G E+ D G VN +Q SN++ AGD
Sbjct: 298 IKLKDGRKVETDHIVTAVGLEPNVELAKTGG-LEIDSDFGGFRVNAELQAR-SNIWVAGD 355
Query: 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349
+D+ ++ A G A + M GA K
Sbjct: 356 AAC-FYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAK 391
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 67 GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIW--------YSPHVIT 118
G+ + V +D R N V ++I ++ I TG +PR +
Sbjct: 141 GVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGAEVKSRTTL 200
Query: 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELV------HELSNVDIVWVVKDK 166
R L++ + K I VIG G + +EL + S ++++ + +K
Sbjct: 201 FRKIGDFRALEKISREVKSITVIGGGFLGSELACALGRKSQASGIEVIQLFPEK 254
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 83/223 (37%), Gaps = 34/223 (15%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN-SNIQVHGTPFELA 289
+TI + +VE I D K + V+ AIG PN + L
Sbjct: 227 VTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALT 286
Query: 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349
IGV++ +T++ ++YA GDV ++L A+ G AA+ + GA
Sbjct: 287 DRKAIGVDDYXRTNVGHIYAIGDVNG----------LLQLAHVAEAQGVVAAETIAGA-- 334
Query: 350 NEPVIQDFSFEMFTHMTK--FFGYKVILLGLFNGQTLENDYEILLR------------VT 395
+ + + + F V GL Q Y++++ V
Sbjct: 335 -----ETLTLGDHRXLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVG 389
Query: 396 RGEEYIKLV--MKDGRMQGAVLIGETEIEEMCENLILNQLDLT 436
++KLV K G + G L+G E + E + + DLT
Sbjct: 390 DPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLT 432
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 63/164 (38%), Gaps = 22/164 (13%)
Query: 175 PGAAEFFQDSINKTNTAKPETIFKRMRYNTGGE----KGPSLGPDWHTQVNLHGSSRDTK 230
PG EF I+ + A R+ GG +G + + T+V L RDT
Sbjct: 131 PGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLI-HRRDTF 189
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT------ 284
E + + + N+ VK G +VV + + V+G
Sbjct: 190 KAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGF 249
Query: 285 --PFELAPDCGI--------GVNELMQTSISNVYAAGDVCTPSW 318
P + A GI V+E M+TS+ V+AAGD CT +W
Sbjct: 250 DPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGD-CTSAW 292
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 61/166 (36%), Gaps = 20/166 (12%)
Query: 169 SATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQ----VNLHG 224
SA + P A ++ + T + KR+ GG G LG WH + L
Sbjct: 139 SAPLIPPWAQVDYERVVTSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEY 198
Query: 225 SSRD-TKITIEYSCEVERIVDSEDDTCN--------------AYVKLTNGHTHACDIVVS 269
R + +E S ER+ + T A V+L G D V+
Sbjct: 199 MDRILPTMDLEVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLV 258
Query: 270 AIGVVP-NSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC 314
A+G P + + I V+E ++T + ++YA GDV
Sbjct: 259 AVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVV 304
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 283 DXLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 342
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 343 IAAGRKLAHRLF 354
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 294 IGVNELMQTSISNVYAAGDVCTPSW 318
I V+E M+TS+ V+AAGD CT +W
Sbjct: 269 IKVDEWMRTSVPGVFAAGD-CTSAW 292
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 268 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 327
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 328 IAAGRKLAHRLF 339
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 266 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 325
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 326 IAAGRKLAHRLF 337
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 282 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 341
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 342 IAAGRKLAHRLF 353
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 283 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 342
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 343 IAAGRKLAHRLF 354
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 284 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 343
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 344 IAAGRKLAHRLF 355
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 283 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 342
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 343 IAAGRKLAHRLF 354
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 283 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 342
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 343 IAAGRKLAHRLF 354
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 266 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 325
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 326 IAAGRKLAHRLF 337
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TPSW 318
D ++ AIG VPN+ ++ ++ + I V+E T++ +YA GDVC TP
Sbjct: 283 DCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVA 342
Query: 319 DLAKQWFQMRLW 330
A + RL+
Sbjct: 343 IAAGRKLAHRLF 354
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 104/262 (39%), Gaps = 62/262 (23%)
Query: 132 LKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189
+K +KKI ++G+G IA EL++ + +D + I F D ++ + K N
Sbjct: 173 IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKF-DESVINVLENDMKKNN 231
Query: 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDT 249
+N+ +T E++++ D
Sbjct: 232 ------------------------------INI--------VTFADVVEIKKVSDK---- 249
Query: 250 CNAYVKLTNGHTHA-CDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNV 307
N + L++G + D V+ +G P++ N+++ E + I V+E +TS++N+
Sbjct: 250 -NLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNY-IVVDENQRTSVNNI 307
Query: 308 YAAGDVCT-------PSWDLAKQWFQMRLWTQAKHMGT---YAAKCMVGAVKNEPVIQDF 357
YA GD C +L K + + R + +++ Y + A+ ++ D
Sbjct: 308 YAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLAD- 366
Query: 358 SFEMFTHMTKFFGYKVILLGLF 379
+F T+ YK+I +F
Sbjct: 367 --RLFLKKTRKTNYKLIPTVIF 386
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 247 DDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306
++T N V T+ +CD + A+ + P + + D I V+ +QTS+ N
Sbjct: 216 EETANGIVLETSEQEISCDSGIFALNLHPQ--LAYLDKKIQRNLDQTIAVDAYLQTSVPN 273
Query: 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCM 344
V+A GD + + + F L A G A +
Sbjct: 274 VFAIGDCISVXNEPVAETFYAPLVNNAVRTGLVVANNL 311
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTP 316
H H DI S + +++ HGT L DCG G+ + + ++ +YA D+ P
Sbjct: 73 HVHDVDIEGSRNFI---ASLPGHGTSRAL--DCGAGIGRITKNLLTKLYATTDLLEP 124
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 83/352 (23%), Positives = 127/352 (36%), Gaps = 87/352 (24%)
Query: 96 YKTLCICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS 155
+K I TG+ P ++ I D+ L E KS +VVIG G I EL +
Sbjct: 134 FKNAIIATGSRPIELPNFKFSNRILDSTGALNLGEVPKS---LVVIGGGYIGIELGTAYA 190
Query: 156 NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPD 215
N T L+ GA E K A I KR++ G +
Sbjct: 191 NFGT---------KVTILE-GAGEILS-GFEKQMAA---IIKKRLKKK---------GVE 227
Query: 216 WHTQVNLHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274
T G+ R+ +T+ Y + E T +A D V+ +G
Sbjct: 228 VVTNALAKGAEEREDGVTVTYEA------NGETKTIDA------------DYVLVTVGRR 269
Query: 275 PNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA 333
PN++ + + ++ I V++ +TS+ N++A GD+ P LA
Sbjct: 270 PNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIV-PGPALA------------ 316
Query: 334 KHMGTYAAKCMVGAVKNEPVIQDF--------------SFEMFTHMTKFFGYKVILLGL- 378
H +Y K A+ P D+ S F K G VI
Sbjct: 317 -HKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFP 375
Query: 379 --FNGQTLENDYEILLRVTRGEEYIKLVMK--DGRMQGAVLIGETEIEEMCE 426
NG+ L L T G ++KLV++ DG + GA +IG + + E
Sbjct: 376 FAANGRALA------LNDTDG--FLKLVVRKEDGVIIGAQIIGPNASDMIAE 419
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 12/48 (25%)
Query: 398 EEYIKLVMKDGR-MQGAVLIGE-----------TEIEEMCENLILNQL 433
EE +KLV K G+ Q AV +GE EIE +CEN L Q+
Sbjct: 112 EEAVKLVEKRGQYXQEAVPVGEGAXGAIIGLNEAEIESICENAALGQV 159
>pdb|3REV|A Chain A, Crystal Structure Of Human Alloreactive Tcr Nb20
Length = 203
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDD 248
N KP+ ++R + +K L D+ +Q N+ S+D+ + I C ++ + S D
Sbjct: 115 NIQKPDPAVYQLRDSKSSDKSVCLFTDFDSQTNV-SQSKDSDVYITDKCVLD--MRSMDF 171
Query: 249 TCNAYVKLTNGHTHAC 264
N+ V +N AC
Sbjct: 172 KSNSAVAWSNKSDFAC 187
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 254 VKLTNGHTHACDIVVSAIGVVP-NSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
++L +G + D ++ AIG P N NI + + I V++ T+I +YA GD
Sbjct: 244 LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGD 303
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 254 VKLTNGHTHACDIVVSAIGVVP-NSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
++L +G + D ++ AIG P N NI + + I V++ T+I +YA GD
Sbjct: 244 LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGD 303
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 72 IVDTVAAIDPRVNCVITEKQNRIKYKTLCICTG 104
I + +IDP N V T+ +I+Y L I TG
Sbjct: 74 INEKAESIDPDANTVTTQSGKKIEYDYLVIATG 106
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 72 IVDTVAAIDPRVNCVITEKQNRIKYKTLCICTG 104
I + +IDP N V T+ +I+Y L I TG
Sbjct: 74 INEKAESIDPDANTVTTQSGKKIEYDYLVIATG 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,994,232
Number of Sequences: 62578
Number of extensions: 530996
Number of successful extensions: 1361
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1257
Number of HSP's gapped (non-prelim): 134
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)