Query psy1545
Match_columns 454
No_of_seqs 293 out of 2890
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 21:23:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1545.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1545hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.7E-56 5.8E-61 436.2 33.6 382 2-451 4-448 (454)
2 PRK13512 coenzyme A disulfide 100.0 7.6E-53 1.7E-57 420.4 37.3 391 3-448 2-424 (438)
3 TIGR01424 gluta_reduc_2 glutat 100.0 2.9E-52 6.2E-57 417.5 35.5 377 2-447 2-438 (446)
4 PLN02507 glutathione reductase 100.0 3.6E-52 7.9E-57 419.9 36.2 380 2-450 25-476 (499)
5 TIGR01421 gluta_reduc_1 glutat 100.0 1.8E-51 3.9E-56 411.2 36.5 376 2-447 2-442 (450)
6 PRK06116 glutathione reductase 100.0 9E-52 2E-56 415.2 33.8 378 2-450 4-443 (450)
7 PRK09564 coenzyme A disulfide 100.0 3.2E-51 6.9E-56 411.4 36.8 393 4-448 2-430 (444)
8 PRK08010 pyridine nucleotide-d 100.0 1.5E-51 3.3E-56 412.5 34.0 380 1-448 2-430 (441)
9 PRK07846 mycothione reductase; 100.0 4E-51 8.6E-56 408.5 36.5 375 2-448 1-439 (451)
10 PRK06467 dihydrolipoamide dehy 100.0 3.3E-51 7.1E-56 411.7 35.1 378 2-448 4-448 (471)
11 PRK05249 soluble pyridine nucl 100.0 4.9E-51 1.1E-55 411.6 35.7 378 2-447 5-445 (461)
12 PRK06370 mercuric reductase; V 100.0 4.9E-51 1.1E-55 411.1 35.3 380 2-448 5-446 (463)
13 PRK09754 phenylpropionate diox 100.0 2.6E-50 5.6E-55 397.8 38.2 381 1-447 2-395 (396)
14 PTZ00058 glutathione reductase 100.0 1.4E-50 3E-55 409.6 36.6 390 1-448 47-550 (561)
15 PRK07845 flavoprotein disulfid 100.0 1.3E-50 2.8E-55 407.1 35.3 380 2-448 1-449 (466)
16 PLN02546 glutathione reductase 100.0 5.8E-51 1.3E-55 412.6 31.5 376 2-447 79-524 (558)
17 PRK06416 dihydrolipoamide dehy 100.0 1.9E-50 4.2E-55 407.1 35.1 378 2-448 4-445 (462)
18 PRK07818 dihydrolipoamide dehy 100.0 3.5E-50 7.5E-55 405.0 35.9 380 2-448 4-449 (466)
19 TIGR01423 trypano_reduc trypan 100.0 3.1E-50 6.8E-55 403.3 34.7 381 2-448 3-464 (486)
20 TIGR03452 mycothione_red mycot 100.0 1.3E-49 2.9E-54 398.0 36.0 375 2-448 2-442 (452)
21 TIGR02053 MerA mercuric reduct 100.0 7.8E-50 1.7E-54 402.6 34.6 379 3-450 1-441 (463)
22 PRK06115 dihydrolipoamide dehy 100.0 1.1E-49 2.4E-54 400.5 35.2 380 1-451 2-450 (466)
23 PRK14989 nitrite reductase sub 100.0 2.7E-49 5.8E-54 417.1 39.2 388 2-447 3-405 (847)
24 PRK07251 pyridine nucleotide-d 100.0 2.4E-49 5.2E-54 396.3 35.8 378 1-448 2-429 (438)
25 PRK14694 putative mercuric red 100.0 2.5E-49 5.5E-54 398.6 35.9 376 2-448 6-446 (468)
26 TIGR01438 TGR thioredoxin and 100.0 3.8E-49 8.2E-54 396.6 35.9 380 2-448 2-461 (484)
27 PRK05976 dihydrolipoamide dehy 100.0 5E-49 1.1E-53 397.2 36.4 379 2-447 4-454 (472)
28 PRK14727 putative mercuric red 100.0 8.7E-49 1.9E-53 395.2 35.5 377 2-448 16-457 (479)
29 PRK13748 putative mercuric red 100.0 1.1E-48 2.4E-53 403.8 35.8 376 2-448 98-539 (561)
30 PTZ00153 lipoamide dehydrogena 100.0 1.9E-48 4E-53 398.7 35.9 380 2-447 116-642 (659)
31 PRK06912 acoL dihydrolipoamide 100.0 1.4E-48 3.1E-53 392.1 34.1 374 4-447 2-440 (458)
32 PRK06327 dihydrolipoamide dehy 100.0 2.1E-48 4.5E-53 392.4 35.1 378 2-447 4-457 (475)
33 PRK06292 dihydrolipoamide dehy 100.0 1.5E-48 3.2E-53 393.5 33.9 378 2-450 3-443 (460)
34 PTZ00052 thioredoxin reductase 100.0 9E-48 1.9E-52 388.4 36.2 379 2-448 5-471 (499)
35 TIGR01350 lipoamide_DH dihydro 100.0 1.4E-47 3.1E-52 386.6 36.5 381 2-448 1-444 (461)
36 TIGR02374 nitri_red_nirB nitri 100.0 7.8E-47 1.7E-51 399.3 38.6 377 5-443 1-390 (785)
37 PRK04965 NADH:flavorubredoxin 100.0 2.3E-46 5.1E-51 367.7 36.5 354 1-420 1-365 (377)
38 KOG0405|consensus 100.0 3.1E-47 6.8E-52 342.0 25.3 371 2-438 20-454 (478)
39 KOG1335|consensus 100.0 1.7E-46 3.6E-51 341.5 26.6 385 2-453 39-491 (506)
40 TIGR03385 CoA_CoA_reduc CoA-di 100.0 4E-45 8.8E-50 365.0 34.5 380 16-448 1-417 (427)
41 COG1251 NirB NAD(P)H-nitrite r 100.0 1.1E-44 2.4E-49 356.4 28.7 384 2-447 3-399 (793)
42 COG1252 Ndh NADH dehydrogenase 100.0 4.6E-43 9.9E-48 334.4 26.2 297 1-352 2-335 (405)
43 PTZ00318 NADH dehydrogenase-li 100.0 3.6E-41 7.7E-46 335.0 27.7 293 2-352 10-351 (424)
44 KOG1336|consensus 100.0 2.7E-40 5.8E-45 312.1 31.4 376 3-438 75-462 (478)
45 KOG4716|consensus 100.0 4.3E-41 9.3E-46 301.3 21.9 381 2-447 19-480 (503)
46 TIGR03169 Nterm_to_SelD pyridi 100.0 1.5E-38 3.1E-43 311.5 25.4 292 4-352 1-314 (364)
47 TIGR01292 TRX_reduct thioredox 100.0 4.6E-36 1E-40 286.3 26.3 274 3-346 1-298 (300)
48 PRK10262 thioredoxin reductase 100.0 5.1E-35 1.1E-39 281.2 24.1 287 2-348 6-314 (321)
49 TIGR03140 AhpF alkyl hydropero 100.0 2E-34 4.3E-39 293.0 24.1 276 3-347 213-511 (515)
50 COG0492 TrxB Thioredoxin reduc 100.0 1.2E-33 2.5E-38 264.3 25.9 275 2-348 3-300 (305)
51 TIGR01316 gltA glutamate synth 100.0 4.9E-34 1.1E-38 285.3 24.8 278 2-346 133-447 (449)
52 TIGR03143 AhpF_homolog putativ 100.0 8E-34 1.7E-38 290.6 25.3 277 2-348 4-308 (555)
53 PRK12831 putative oxidoreducta 100.0 1.8E-33 3.8E-38 281.7 25.7 282 2-349 140-461 (464)
54 PRK15317 alkyl hydroperoxide r 100.0 5.3E-33 1.1E-37 282.9 25.5 278 2-348 211-511 (517)
55 KOG1346|consensus 100.0 2.2E-32 4.8E-37 251.5 20.2 383 3-439 179-649 (659)
56 PRK11749 dihydropyrimidine deh 100.0 9.5E-32 2E-36 270.2 25.1 281 3-351 141-454 (457)
57 KOG2495|consensus 100.0 2.5E-32 5.4E-37 253.3 18.9 287 2-346 55-394 (491)
58 PRK09853 putative selenate red 100.0 1.2E-31 2.5E-36 281.4 25.5 279 3-349 540-842 (1019)
59 PRK12778 putative bifunctional 100.0 1E-31 2.2E-36 284.8 24.9 281 3-349 432-750 (752)
60 PRK12770 putative glutamate sy 100.0 2.9E-31 6.2E-36 258.0 24.2 282 3-348 19-349 (352)
61 PRK12779 putative bifunctional 100.0 6.9E-31 1.5E-35 280.1 27.5 282 3-349 307-627 (944)
62 KOG2755|consensus 100.0 3.9E-32 8.5E-37 235.8 14.4 314 4-321 1-327 (334)
63 PRK12810 gltD glutamate syntha 100.0 1.3E-30 2.7E-35 262.5 24.0 292 3-351 144-467 (471)
64 TIGR03315 Se_ygfK putative sel 100.0 5.4E-30 1.2E-34 270.3 25.4 277 3-349 538-840 (1012)
65 PRK12775 putative trifunctiona 100.0 1.1E-29 2.4E-34 273.3 24.6 283 3-351 431-757 (1006)
66 COG0446 HcaD Uncharacterized N 100.0 2.9E-28 6.3E-33 243.2 32.9 380 5-438 1-406 (415)
67 PRK12814 putative NADPH-depend 100.0 3.9E-30 8.5E-35 267.4 20.1 282 3-352 194-504 (652)
68 TIGR01318 gltD_gamma_fam gluta 100.0 2.2E-28 4.9E-33 245.3 26.1 278 3-347 142-464 (467)
69 PRK12769 putative oxidoreducta 100.0 3E-28 6.5E-33 254.5 26.2 279 3-348 328-651 (654)
70 TIGR01317 GOGAT_sm_gam glutama 100.0 2.6E-28 5.7E-33 245.7 23.9 292 3-351 144-481 (485)
71 PRK13984 putative oxidoreducta 100.0 1.9E-27 4.2E-32 247.1 23.8 277 3-348 284-601 (604)
72 PLN02852 ferredoxin-NADP+ redu 100.0 7.7E-27 1.7E-31 231.5 23.7 327 2-348 26-421 (491)
73 PRK12809 putative oxidoreducta 100.0 8.6E-27 1.9E-31 242.5 23.4 282 2-349 310-635 (639)
74 KOG0404|consensus 99.9 2.8E-26 6E-31 195.0 17.9 260 3-317 9-296 (322)
75 TIGR01372 soxA sarcosine oxida 99.9 9.1E-26 2E-30 244.6 25.8 275 2-348 163-471 (985)
76 COG3634 AhpF Alkyl hydroperoxi 99.9 3.3E-27 7.2E-32 213.1 11.7 274 3-345 212-511 (520)
77 PRK12771 putative glutamate sy 99.9 7.1E-25 1.5E-29 225.7 22.1 282 3-351 138-446 (564)
78 PLN02172 flavin-containing mon 99.9 7.8E-24 1.7E-28 210.9 24.9 270 2-348 10-352 (461)
79 PF00743 FMO-like: Flavin-bind 99.9 3.2E-21 7E-26 194.6 22.9 318 3-349 2-397 (531)
80 KOG3851|consensus 99.9 3.4E-22 7.3E-27 178.9 13.0 305 2-363 39-375 (446)
81 COG0493 GltD NADPH-dependent g 99.8 3.6E-20 7.9E-25 182.2 15.1 280 3-345 124-447 (457)
82 PF13434 K_oxygenase: L-lysine 99.8 3.4E-20 7.3E-25 177.7 13.2 268 3-274 3-340 (341)
83 PF07992 Pyr_redox_2: Pyridine 99.8 1.5E-20 3.3E-25 168.4 8.9 124 4-131 1-148 (201)
84 COG3486 IucD Lysine/ornithine 99.8 4.6E-19 9.9E-24 165.2 18.8 307 2-315 5-387 (436)
85 KOG0399|consensus 99.8 1.6E-19 3.4E-24 183.6 12.7 309 3-346 1786-2117(2142)
86 PRK06567 putative bifunctional 99.8 1.4E-18 3.1E-23 180.9 17.3 300 3-345 384-766 (1028)
87 COG2072 TrkA Predicted flavopr 99.7 3.8E-16 8.2E-21 155.3 22.0 161 2-169 8-211 (443)
88 PF13738 Pyr_redox_3: Pyridine 99.7 4.4E-17 9.6E-22 146.1 12.6 158 6-167 1-201 (203)
89 KOG1800|consensus 99.7 9.1E-17 2E-21 147.8 9.4 163 3-172 21-220 (468)
90 KOG1399|consensus 99.7 2.8E-15 6.1E-20 147.0 17.4 266 2-348 6-333 (448)
91 PTZ00188 adrenodoxin reductase 99.7 1.2E-15 2.5E-20 149.5 14.0 291 3-317 40-417 (506)
92 COG1148 HdrA Heterodisulfide r 99.7 1.1E-14 2.3E-19 138.1 19.5 105 228-346 427-542 (622)
93 PRK05329 anaerobic glycerol-3- 99.6 1.5E-14 3.2E-19 142.0 16.2 157 138-347 218-419 (422)
94 PF00070 Pyr_redox: Pyridine n 99.3 2E-11 4.3E-16 91.6 9.0 78 137-259 1-80 (80)
95 PRK08401 L-aspartate oxidase; 99.1 4.3E-10 9.2E-15 113.5 11.9 57 289-346 308-364 (466)
96 COG2081 Predicted flavoprotein 99.1 7.6E-10 1.7E-14 104.3 11.7 105 2-108 3-170 (408)
97 COG4529 Uncharacterized protei 99.1 9.8E-09 2.1E-13 99.4 18.7 163 3-166 2-231 (474)
98 PRK09231 fumarate reductase fl 99.1 8.9E-09 1.9E-13 106.5 18.8 75 272-348 340-414 (582)
99 COG0029 NadB Aspartate oxidase 99.0 1.5E-09 3.2E-14 104.8 10.3 75 268-348 319-397 (518)
100 PRK05945 sdhA succinate dehydr 99.0 1.4E-08 3E-13 105.2 18.0 38 1-38 2-39 (575)
101 TIGR01176 fum_red_Fp fumarate 99.0 3.6E-09 7.9E-14 109.2 11.3 37 2-38 3-39 (580)
102 PF02852 Pyr_redox_dim: Pyridi 99.0 1.2E-09 2.6E-14 87.3 5.9 85 358-448 2-103 (110)
103 PF03486 HI0933_like: HI0933-l 98.9 4.6E-09 9.9E-14 103.1 10.3 103 3-107 1-166 (409)
104 TIGR00551 nadB L-aspartate oxi 98.9 1.5E-08 3.3E-13 103.0 12.9 58 289-347 331-388 (488)
105 TIGR03378 glycerol3P_GlpB glyc 98.9 2.1E-07 4.6E-12 90.7 19.8 115 222-345 269-419 (419)
106 PRK08275 putative oxidoreducta 98.9 9.6E-09 2.1E-13 106.0 11.2 37 2-38 9-45 (554)
107 PRK06854 adenylylsulfate reduc 98.9 2E-08 4.3E-13 104.4 12.7 37 2-38 11-47 (608)
108 PRK06175 L-aspartate oxidase; 98.9 2E-08 4.3E-13 100.3 12.2 58 289-347 329-386 (433)
109 PRK06452 sdhA succinate dehydr 98.8 1.7E-08 3.6E-13 104.2 10.8 35 2-38 5-39 (566)
110 PRK09897 hypothetical protein; 98.8 6.5E-08 1.4E-12 98.0 14.7 150 3-155 2-211 (534)
111 PRK07804 L-aspartate oxidase; 98.8 3.1E-08 6.8E-13 101.8 11.8 36 2-39 16-51 (541)
112 PLN02463 lycopene beta cyclase 98.8 4.3E-08 9.3E-13 97.8 12.0 105 2-108 28-170 (447)
113 PRK06069 sdhA succinate dehydr 98.8 1.6E-07 3.5E-12 97.5 16.4 38 2-39 5-43 (577)
114 TIGR01812 sdhA_frdA_Gneg succi 98.8 1.9E-08 4E-13 104.4 9.1 33 4-38 1-33 (566)
115 COG0579 Predicted dehydrogenas 98.8 8.9E-08 1.9E-12 93.3 12.4 58 227-288 164-222 (429)
116 COG3075 GlpB Anaerobic glycero 98.7 1E-07 2.3E-12 87.1 11.2 119 222-347 264-416 (421)
117 PRK07573 sdhA succinate dehydr 98.7 1.2E-07 2.6E-12 99.1 13.3 34 2-37 35-68 (640)
118 PRK11728 hydroxyglutarate oxid 98.7 3.7E-08 8.1E-13 97.6 8.8 39 1-39 1-39 (393)
119 PRK13800 putative oxidoreducta 98.7 4.9E-08 1.1E-12 106.1 10.3 35 2-38 13-47 (897)
120 PRK09077 L-aspartate oxidase; 98.7 1.7E-07 3.8E-12 96.2 13.6 58 289-347 351-408 (536)
121 PRK08071 L-aspartate oxidase; 98.7 3.5E-07 7.7E-12 93.3 15.6 57 290-347 331-387 (510)
122 TIGR01790 carotene-cycl lycope 98.7 1.1E-07 2.4E-12 94.1 11.4 102 4-107 1-141 (388)
123 TIGR02032 GG-red-SF geranylger 98.7 1.3E-07 2.7E-12 89.8 10.9 35 3-39 1-35 (295)
124 PRK12842 putative succinate de 98.7 2E-08 4.3E-13 104.1 5.8 39 2-42 9-47 (574)
125 TIGR02061 aprA adenosine phosp 98.7 3E-07 6.5E-12 95.0 14.3 33 4-38 1-37 (614)
126 PRK04176 ribulose-1,5-biphosph 98.7 1.6E-07 3.5E-12 86.8 10.6 37 2-40 25-61 (257)
127 PF05834 Lycopene_cycl: Lycope 98.6 2.6E-07 5.6E-12 90.7 12.2 104 4-107 1-142 (374)
128 COG0644 FixC Dehydrogenases (f 98.6 1.6E-07 3.5E-12 93.0 10.3 38 1-40 2-39 (396)
129 PRK07608 ubiquinone biosynthes 98.6 2.9E-07 6.3E-12 91.1 11.9 37 1-39 4-40 (388)
130 PF01134 GIDA: Glucose inhibit 98.6 2.4E-07 5.2E-12 89.3 10.6 100 4-105 1-150 (392)
131 PRK05192 tRNA uridine 5-carbox 98.6 2.8E-07 6.2E-12 93.7 11.6 103 2-106 4-156 (618)
132 PRK08205 sdhA succinate dehydr 98.6 1.5E-07 3.2E-12 97.8 9.4 34 2-38 5-38 (583)
133 PRK07395 L-aspartate oxidase; 98.6 5.4E-07 1.2E-11 92.7 13.3 35 2-39 9-43 (553)
134 PRK06834 hypothetical protein; 98.6 4.9E-07 1.1E-11 91.8 12.4 106 1-108 2-157 (488)
135 PRK05714 2-octaprenyl-3-methyl 98.6 4.7E-07 1E-11 90.2 12.0 35 1-37 1-35 (405)
136 PRK07333 2-octaprenyl-6-methox 98.6 4.5E-07 9.8E-12 90.2 11.8 36 3-38 2-37 (403)
137 PRK06847 hypothetical protein; 98.6 4.8E-07 1E-11 89.1 11.8 105 2-108 4-164 (375)
138 PRK09126 hypothetical protein; 98.6 3.9E-07 8.4E-12 90.3 11.1 36 1-38 2-37 (392)
139 TIGR01350 lipoamide_DH dihydro 98.5 6.9E-07 1.5E-11 90.5 12.5 96 3-110 171-272 (461)
140 COG2081 Predicted flavoprotein 98.5 4E-07 8.8E-12 86.2 9.1 137 135-274 3-166 (408)
141 PRK08244 hypothetical protein; 98.5 6.6E-07 1.4E-11 91.4 11.5 36 1-38 1-36 (493)
142 PRK08773 2-octaprenyl-3-methyl 98.5 8.3E-07 1.8E-11 88.0 11.9 35 2-38 6-40 (392)
143 PRK06184 hypothetical protein; 98.5 7.1E-07 1.5E-11 91.4 11.4 36 1-38 2-37 (502)
144 PRK07251 pyridine nucleotide-d 98.5 1.6E-06 3.5E-11 87.2 13.8 97 3-111 158-257 (438)
145 PRK10157 putative oxidoreducta 98.5 8.8E-07 1.9E-11 88.6 11.7 36 2-39 5-40 (428)
146 PLN02697 lycopene epsilon cycl 98.5 6.2E-07 1.3E-11 91.0 10.6 104 2-107 108-248 (529)
147 TIGR00292 thiazole biosynthesi 98.5 1E-06 2.3E-11 81.1 11.2 37 2-40 21-57 (254)
148 TIGR01292 TRX_reduct thioredox 98.5 8.5E-07 1.8E-11 84.3 11.0 111 137-278 2-115 (300)
149 PRK08849 2-octaprenyl-3-methyl 98.5 8.8E-07 1.9E-11 87.5 11.3 35 1-37 2-36 (384)
150 PRK08013 oxidoreductase; Provi 98.5 9.7E-07 2.1E-11 87.7 11.7 36 1-38 2-37 (400)
151 PRK07843 3-ketosteroid-delta-1 98.5 1.8E-07 4E-12 96.5 6.5 38 2-41 7-44 (557)
152 PRK07512 L-aspartate oxidase; 98.5 7.9E-07 1.7E-11 90.8 10.9 57 290-347 340-396 (513)
153 PRK07494 2-octaprenyl-6-methox 98.5 1.1E-06 2.4E-11 87.0 11.5 35 2-38 7-41 (388)
154 PF13454 NAD_binding_9: FAD-NA 98.5 1.1E-06 2.3E-11 75.0 9.7 100 6-105 1-155 (156)
155 PLN00093 geranylgeranyl diphos 98.5 1.1E-06 2.5E-11 88.0 11.3 35 1-37 38-72 (450)
156 PRK05868 hypothetical protein; 98.5 4.7E-06 1E-10 81.9 15.5 47 229-278 117-163 (372)
157 COG0654 UbiH 2-polyprenyl-6-me 98.5 1.3E-06 2.8E-11 86.4 11.4 104 1-106 1-161 (387)
158 COG1053 SdhA Succinate dehydro 98.5 8E-07 1.7E-11 90.7 9.9 36 2-39 6-41 (562)
159 TIGR01377 soxA_mon sarcosine o 98.4 3.9E-07 8.4E-12 89.9 7.3 35 3-39 1-35 (380)
160 PF01266 DAO: FAD dependent ox 98.4 1E-06 2.2E-11 85.8 10.2 33 4-38 1-33 (358)
161 TIGR01789 lycopene_cycl lycope 98.4 1.9E-06 4.2E-11 84.3 11.6 102 4-107 1-138 (370)
162 TIGR01320 mal_quin_oxido malat 98.4 5E-06 1.1E-10 84.1 14.6 36 3-38 1-36 (483)
163 TIGR02023 BchP-ChlP geranylger 98.4 1.8E-06 4E-11 85.3 11.3 32 3-36 1-32 (388)
164 PRK08850 2-octaprenyl-6-methox 98.4 1.9E-06 4.2E-11 85.7 11.4 33 2-36 4-36 (405)
165 PRK08163 salicylate hydroxylas 98.4 1.6E-06 3.6E-11 86.0 10.8 36 2-39 4-39 (396)
166 PTZ00383 malate:quinone oxidor 98.4 1.1E-06 2.4E-11 88.6 9.4 37 2-38 45-81 (497)
167 PRK07190 hypothetical protein; 98.4 2.3E-06 5E-11 86.9 11.7 35 2-38 5-39 (487)
168 PRK10015 oxidoreductase; Provi 98.4 2.3E-06 5E-11 85.6 11.4 36 2-39 5-40 (429)
169 PF00070 Pyr_redox: Pyridine n 98.4 2.1E-06 4.6E-11 64.1 8.4 76 4-91 1-80 (80)
170 PRK08020 ubiF 2-octaprenyl-3-m 98.4 3E-06 6.5E-11 83.9 12.0 34 2-37 5-38 (391)
171 TIGR03329 Phn_aa_oxid putative 98.4 8.2E-07 1.8E-11 89.8 7.9 39 2-40 24-62 (460)
172 PRK06753 hypothetical protein; 98.4 3.2E-06 6.9E-11 83.2 11.4 34 3-38 1-34 (373)
173 PRK05732 2-octaprenyl-6-methox 98.4 3.1E-06 6.8E-11 83.9 11.4 36 1-36 2-38 (395)
174 TIGR02028 ChlP geranylgeranyl 98.3 2.8E-06 6E-11 84.2 10.8 34 3-38 1-34 (398)
175 PRK07236 hypothetical protein; 98.3 4.2E-06 9E-11 82.8 12.1 103 2-106 6-153 (386)
176 PRK07364 2-octaprenyl-6-methox 98.3 3.3E-06 7.2E-11 84.4 11.4 35 2-38 18-52 (415)
177 PRK11259 solA N-methyltryptoph 98.3 5.7E-06 1.2E-10 81.5 12.8 37 1-39 2-38 (376)
178 PRK13977 myosin-cross-reactive 98.3 7.8E-06 1.7E-10 82.6 13.7 42 2-43 22-65 (576)
179 PRK06185 hypothetical protein; 98.3 3.5E-06 7.7E-11 83.9 11.4 34 2-37 6-39 (407)
180 PRK06134 putative FAD-binding 98.3 2.4E-06 5.2E-11 88.7 10.1 38 2-41 12-49 (581)
181 PRK07045 putative monooxygenas 98.3 4.3E-06 9.3E-11 82.8 11.5 35 2-38 5-39 (388)
182 TIGR01984 UbiH 2-polyprenyl-6- 98.3 4.1E-06 9E-11 82.7 11.2 33 4-38 1-34 (382)
183 TIGR03385 CoA_CoA_reduc CoA-di 98.3 5.1E-06 1.1E-10 83.3 11.7 96 3-109 138-235 (427)
184 PRK07588 hypothetical protein; 98.3 4.6E-06 9.9E-11 82.7 10.9 34 3-38 1-34 (391)
185 TIGR01988 Ubi-OHases Ubiquinon 98.3 5.3E-06 1.1E-10 82.0 11.3 33 4-38 1-33 (385)
186 KOG2820|consensus 98.3 4.3E-06 9.4E-11 77.1 9.3 54 227-282 164-217 (399)
187 PRK06617 2-octaprenyl-6-methox 98.3 7E-06 1.5E-10 80.8 11.7 32 3-36 2-33 (374)
188 PRK04965 NADH:flavorubredoxin 98.3 7.4E-06 1.6E-10 80.7 11.8 96 3-109 142-241 (377)
189 COG1249 Lpd Pyruvate/2-oxoglut 98.3 8.9E-06 1.9E-10 80.8 12.2 99 3-113 174-278 (454)
190 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 6.6E-06 1.4E-10 81.4 11.2 36 1-38 1-36 (390)
191 PRK12409 D-amino acid dehydrog 98.3 3.2E-06 6.9E-11 84.3 8.9 35 2-38 1-35 (410)
192 PRK00711 D-amino acid dehydrog 98.2 2.8E-05 6.1E-10 77.7 15.5 33 4-38 2-34 (416)
193 COG1232 HemY Protoporphyrinoge 98.2 8.3E-06 1.8E-10 80.3 11.3 42 3-44 1-42 (444)
194 PRK09754 phenylpropionate diox 98.2 7.3E-06 1.6E-10 81.3 11.1 96 3-109 145-243 (396)
195 PLN02661 Putative thiazole syn 98.2 8.2E-06 1.8E-10 77.6 10.8 38 2-40 92-129 (357)
196 PRK06912 acoL dihydrolipoamide 98.2 9E-06 2E-10 82.2 11.9 97 3-111 171-272 (458)
197 PRK06996 hypothetical protein; 98.2 8.2E-06 1.8E-10 81.0 11.2 36 2-37 11-48 (398)
198 PF01494 FAD_binding_3: FAD bi 98.2 7.3E-06 1.6E-10 79.7 10.7 35 2-38 1-35 (356)
199 PRK01747 mnmC bifunctional tRN 98.2 8.5E-06 1.8E-10 86.2 11.7 47 226-276 418-464 (662)
200 PF13450 NAD_binding_8: NAD(P) 98.2 2E-06 4.2E-11 61.9 4.6 36 7-44 1-36 (68)
201 PF01946 Thi4: Thi4 family; PD 98.2 1.5E-06 3.3E-11 75.8 4.6 38 2-41 17-54 (230)
202 COG1635 THI4 Ribulose 1,5-bisp 98.2 1.9E-06 4.2E-11 74.7 5.0 37 3-41 31-67 (262)
203 PRK05976 dihydrolipoamide dehy 98.2 1.2E-05 2.5E-10 81.8 11.7 98 3-112 181-286 (472)
204 TIGR01989 COQ6 Ubiquinone bios 98.2 1.1E-05 2.5E-10 81.0 11.4 32 3-36 1-36 (437)
205 PRK08132 FAD-dependent oxidore 98.2 1.3E-05 2.8E-10 83.1 11.8 35 2-38 23-57 (547)
206 PRK06416 dihydrolipoamide dehy 98.2 1.2E-05 2.7E-10 81.4 11.3 97 3-111 173-276 (462)
207 PRK06126 hypothetical protein; 98.2 1.3E-05 2.9E-10 83.0 11.7 35 2-38 7-41 (545)
208 PRK13512 coenzyme A disulfide 98.2 1.5E-05 3.1E-10 80.2 11.4 93 3-109 149-243 (438)
209 PRK08243 4-hydroxybenzoate 3-m 98.2 1.5E-05 3.3E-10 79.0 11.4 36 1-38 1-36 (392)
210 PRK07846 mycothione reductase; 98.2 1.8E-05 3.9E-10 79.8 11.9 96 3-111 167-266 (451)
211 PRK09564 coenzyme A disulfide 98.2 9.5E-06 2.1E-10 81.8 10.0 111 136-278 1-118 (444)
212 PRK05249 soluble pyridine nucl 98.2 1.8E-05 4E-10 80.2 12.0 97 3-111 176-276 (461)
213 PRK06183 mhpA 3-(3-hydroxyphen 98.2 1.6E-05 3.4E-10 82.1 11.7 35 2-38 10-44 (538)
214 PF12831 FAD_oxidored: FAD dep 98.1 2.4E-06 5.2E-11 85.4 5.4 37 4-42 1-37 (428)
215 PRK11445 putative oxidoreducta 98.1 2E-05 4.2E-10 76.9 11.6 33 3-38 2-34 (351)
216 PF03486 HI0933_like: HI0933-l 98.1 2.3E-06 5.1E-11 84.2 5.1 138 137-276 2-167 (409)
217 TIGR00136 gidA glucose-inhibit 98.1 1.8E-05 3.9E-10 80.6 11.5 103 3-107 1-154 (617)
218 PRK06116 glutathione reductase 98.1 2E-05 4.4E-10 79.5 11.8 97 3-111 168-269 (450)
219 TIGR01424 gluta_reduc_2 glutat 98.1 2E-05 4.4E-10 79.4 11.6 96 3-110 167-266 (446)
220 TIGR00275 flavoprotein, HI0933 98.1 1.6E-05 3.6E-10 78.7 10.0 32 6-39 1-32 (400)
221 PF13738 Pyr_redox_3: Pyridine 98.1 3.2E-05 6.9E-10 69.0 10.9 133 139-278 1-143 (203)
222 PRK14694 putative mercuric red 98.1 3E-05 6.5E-10 78.7 12.0 95 3-111 179-277 (468)
223 COG2509 Uncharacterized FAD-de 98.1 0.0001 2.2E-09 71.1 14.6 53 223-277 180-232 (486)
224 PRK06475 salicylate hydroxylas 98.1 2.6E-05 5.6E-10 77.5 11.1 36 1-38 1-36 (400)
225 TIGR02053 MerA mercuric reduct 98.1 3.1E-05 6.8E-10 78.5 11.8 97 3-111 167-270 (463)
226 TIGR01373 soxB sarcosine oxida 98.1 1.6E-05 3.5E-10 79.2 9.4 37 2-39 30-67 (407)
227 PF14759 Reductase_C: Reductas 98.1 2.4E-05 5.3E-10 58.9 8.1 82 364-452 2-84 (85)
228 TIGR01421 gluta_reduc_1 glutat 98.1 3.3E-05 7.2E-10 77.8 11.4 97 3-111 167-269 (450)
229 PRK06327 dihydrolipoamide dehy 98.1 3E-05 6.5E-10 78.8 11.2 97 3-111 184-288 (475)
230 PRK06370 mercuric reductase; V 98.1 3.4E-05 7.5E-10 78.2 11.6 96 3-110 172-274 (463)
231 TIGR03219 salicylate_mono sali 98.0 3.7E-05 8E-10 76.8 11.6 35 3-39 1-36 (414)
232 PLN02172 flavin-containing mon 98.0 0.00013 2.8E-09 73.4 15.5 132 135-278 10-178 (461)
233 PRK07845 flavoprotein disulfid 98.0 4.3E-05 9.3E-10 77.4 12.1 97 3-111 178-278 (466)
234 TIGR03452 mycothione_red mycot 98.0 4.4E-05 9.6E-10 77.0 12.0 97 3-111 170-269 (452)
235 PRK07818 dihydrolipoamide dehy 98.0 3.9E-05 8.3E-10 77.8 11.5 97 3-111 173-277 (466)
236 PF04820 Trp_halogenase: Trypt 98.0 2.8E-05 6E-10 78.2 10.3 35 4-38 1-36 (454)
237 PLN02985 squalene monooxygenas 98.0 4.3E-05 9.3E-10 78.0 11.5 34 2-37 43-76 (514)
238 PLN02507 glutathione reductase 98.0 4.8E-05 1E-09 77.6 11.9 97 3-111 204-304 (499)
239 TIGR03140 AhpF alkyl hydropero 98.0 3.4E-05 7.4E-10 79.1 10.7 112 135-277 212-325 (515)
240 PRK06847 hypothetical protein; 98.0 3.8E-05 8.2E-10 75.6 10.6 136 135-278 4-166 (375)
241 COG0445 GidA Flavin-dependent 98.0 1.1E-05 2.4E-10 79.3 6.4 103 2-106 4-157 (621)
242 TIGR02374 nitri_red_nirB nitri 98.0 4.1E-05 8.8E-10 82.3 11.4 97 3-110 141-241 (785)
243 PTZ00318 NADH dehydrogenase-li 98.0 4.6E-05 9.9E-10 76.3 11.0 109 135-278 10-128 (424)
244 PRK04176 ribulose-1,5-biphosph 98.0 0.00013 2.9E-09 67.4 12.9 196 135-349 25-255 (257)
245 PRK15317 alkyl hydroperoxide r 98.0 4.6E-05 1E-09 78.2 10.9 112 135-277 211-324 (517)
246 COG3380 Predicted NAD/FAD-depe 98.0 2.3E-05 4.9E-10 70.3 7.3 34 3-38 2-35 (331)
247 COG0446 HcaD Uncharacterized N 98.0 4.9E-05 1.1E-09 75.7 10.7 95 3-108 137-238 (415)
248 PRK14989 nitrite reductase sub 98.0 4.7E-05 1E-09 82.0 11.1 96 3-109 146-247 (847)
249 PRK06115 dihydrolipoamide dehy 98.0 6.3E-05 1.4E-09 76.2 11.4 96 3-110 175-279 (466)
250 TIGR03169 Nterm_to_SelD pyridi 98.0 3.7E-05 8E-10 75.4 9.4 105 137-278 1-110 (364)
251 COG1252 Ndh NADH dehydrogenase 98.0 5.8E-05 1.2E-09 73.4 10.5 94 4-109 157-264 (405)
252 PRK07538 hypothetical protein; 97.9 6.3E-05 1.4E-09 75.1 11.0 34 3-38 1-34 (413)
253 PRK08010 pyridine nucleotide-d 97.9 8E-05 1.7E-09 75.0 11.8 95 3-110 159-257 (441)
254 PTZ00052 thioredoxin reductase 97.9 8.3E-05 1.8E-09 75.9 11.8 96 3-111 183-282 (499)
255 KOG2665|consensus 97.9 2.5E-05 5.5E-10 71.4 6.8 39 2-40 48-86 (453)
256 TIGR01423 trypano_reduc trypan 97.9 9.2E-05 2E-09 75.1 11.3 98 3-110 188-291 (486)
257 KOG1336|consensus 97.9 8.4E-05 1.8E-09 72.1 10.2 99 4-113 215-319 (478)
258 COG1233 Phytoene dehydrogenase 97.9 1.3E-05 2.8E-10 81.5 4.8 42 2-45 3-44 (487)
259 PRK13748 putative mercuric red 97.9 0.00013 2.8E-09 76.0 11.8 95 3-111 271-369 (561)
260 PRK14727 putative mercuric red 97.8 0.00014 3.1E-09 73.9 11.7 95 3-111 189-287 (479)
261 TIGR01438 TGR thioredoxin and 97.8 0.00014 3.1E-09 73.8 11.5 96 3-111 181-283 (484)
262 PF07992 Pyr_redox_2: Pyridine 97.8 2.6E-05 5.7E-10 69.4 5.5 156 137-317 1-200 (201)
263 PRK07236 hypothetical protein; 97.8 0.00015 3.2E-09 71.8 11.2 140 135-278 6-157 (386)
264 PTZ00058 glutathione reductase 97.8 0.00013 2.9E-09 75.0 11.1 97 3-111 238-340 (561)
265 TIGR00292 thiazole biosynthesi 97.8 0.00019 4.1E-09 66.2 10.7 194 135-347 21-252 (254)
266 PRK06263 sdhA succinate dehydr 97.8 0.00011 2.5E-09 75.8 10.0 58 289-348 346-403 (543)
267 PRK06467 dihydrolipoamide dehy 97.8 0.00024 5.1E-09 72.1 11.7 97 3-111 175-278 (471)
268 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 0.00012 2.7E-09 71.9 9.3 35 3-39 1-35 (433)
269 PRK06292 dihydrolipoamide dehy 97.7 0.00023 4.9E-09 72.2 11.3 97 3-111 170-272 (460)
270 PRK11749 dihydropyrimidine deh 97.7 8.6E-05 1.9E-09 75.1 7.9 35 134-168 139-175 (457)
271 PRK10262 thioredoxin reductase 97.7 0.00026 5.6E-09 68.1 10.8 94 3-110 147-251 (321)
272 PRK11883 protoporphyrinogen ox 97.7 3.6E-05 7.8E-10 77.8 5.0 40 3-42 1-40 (451)
273 KOG0029|consensus 97.7 3.8E-05 8.2E-10 77.5 4.7 38 2-41 15-52 (501)
274 KOG2311|consensus 97.7 9.2E-05 2E-09 71.4 7.0 33 2-36 28-60 (679)
275 PRK08163 salicylate hydroxylas 97.7 0.00038 8.2E-09 69.1 11.6 140 135-277 4-168 (396)
276 PRK12770 putative glutamate sy 97.7 0.00011 2.4E-09 71.7 7.4 36 134-169 17-54 (352)
277 PTZ00153 lipoamide dehydrogena 97.7 0.00037 8.1E-09 72.9 11.7 97 3-111 313-431 (659)
278 PRK08294 phenol 2-monooxygenas 97.7 0.0003 6.5E-09 73.8 10.8 35 2-37 32-66 (634)
279 PRK09126 hypothetical protein; 97.6 0.00017 3.7E-09 71.4 8.5 49 227-278 122-170 (392)
280 PRK07208 hypothetical protein; 97.6 5.6E-05 1.2E-09 77.1 5.0 39 2-42 4-42 (479)
281 PF01134 GIDA: Glucose inhibit 97.6 6.3E-05 1.4E-09 72.8 4.9 134 137-273 1-150 (392)
282 PLN02546 glutathione reductase 97.6 0.00046 1E-08 71.1 11.3 96 3-110 253-353 (558)
283 PRK08773 2-octaprenyl-3-methyl 97.6 0.00045 9.7E-09 68.5 10.9 52 224-278 121-172 (392)
284 PRK06834 hypothetical protein; 97.6 0.0005 1.1E-08 70.0 11.3 138 136-278 4-159 (488)
285 PRK12779 putative bifunctional 97.6 0.00011 2.3E-09 80.1 6.7 99 134-277 305-407 (944)
286 PRK07588 hypothetical protein; 97.6 0.00035 7.5E-09 69.2 9.9 133 137-278 2-161 (391)
287 PRK05714 2-octaprenyl-3-methyl 97.6 0.00022 4.8E-09 71.0 8.5 52 224-278 120-171 (405)
288 TIGR00562 proto_IX_ox protopor 97.6 7.1E-05 1.5E-09 75.9 5.0 40 3-42 3-44 (462)
289 PRK06753 hypothetical protein; 97.6 0.00048 1E-08 67.7 10.7 138 137-278 2-155 (373)
290 PRK05335 tRNA (uracil-5-)-meth 97.6 7.1E-05 1.5E-09 73.2 4.6 37 1-39 1-37 (436)
291 TIGR02032 GG-red-SF geranylger 97.6 0.00046 1E-08 65.2 10.1 136 137-276 2-149 (295)
292 TIGR00031 UDP-GALP_mutase UDP- 97.6 8.6E-05 1.9E-09 72.3 5.0 37 3-41 2-38 (377)
293 PRK06184 hypothetical protein; 97.6 0.00036 7.7E-09 71.6 9.7 133 136-276 4-169 (502)
294 PRK09853 putative selenate red 97.6 0.00023 5.1E-09 76.8 8.4 34 135-168 539-574 (1019)
295 PRK12266 glpD glycerol-3-phosp 97.6 8.9E-05 1.9E-09 75.8 5.1 39 2-42 6-44 (508)
296 COG3349 Uncharacterized conser 97.5 8.1E-05 1.8E-09 73.3 4.4 40 3-44 1-40 (485)
297 PRK07045 putative monooxygenas 97.5 0.00047 1E-08 68.2 10.0 143 135-278 5-168 (388)
298 PRK07233 hypothetical protein; 97.5 8.6E-05 1.9E-09 74.6 4.8 38 4-43 1-38 (434)
299 COG0665 DadA Glycine/D-amino a 97.5 9.9E-05 2.1E-09 73.0 5.1 38 1-40 3-40 (387)
300 PLN02268 probable polyamine ox 97.5 9.7E-05 2.1E-09 74.3 4.9 38 3-42 1-38 (435)
301 KOG2415|consensus 97.5 8.7E-05 1.9E-09 70.4 4.1 39 3-41 77-119 (621)
302 PRK13369 glycerol-3-phosphate 97.5 0.0001 2.2E-09 75.4 5.0 38 2-41 6-43 (502)
303 COG0654 UbiH 2-polyprenyl-6-me 97.5 0.00028 6E-09 69.8 7.9 141 135-278 2-165 (387)
304 TIGR02730 carot_isom carotene 97.5 0.0001 2.2E-09 75.3 4.9 51 222-274 235-285 (493)
305 PRK12416 protoporphyrinogen ox 97.5 0.00011 2.4E-09 74.5 5.1 40 3-42 2-45 (463)
306 TIGR02733 desat_CrtD C-3',4' d 97.5 0.00011 2.4E-09 75.1 5.0 40 3-44 2-41 (492)
307 TIGR03219 salicylate_mono sali 97.5 0.00072 1.6E-08 67.5 10.6 135 137-277 2-161 (414)
308 KOG2495|consensus 97.5 0.0002 4.3E-09 68.5 5.9 95 3-109 219-331 (491)
309 PF00890 FAD_binding_2: FAD bi 97.5 0.00014 3E-09 72.8 5.1 36 4-41 1-36 (417)
310 TIGR03364 HpnW_proposed FAD de 97.5 0.00015 3.2E-09 71.2 5.2 35 3-39 1-35 (365)
311 PF00743 FMO-like: Flavin-bind 97.5 0.00089 1.9E-08 68.5 10.9 169 136-315 2-194 (531)
312 KOG1298|consensus 97.5 0.00047 1E-08 65.0 8.0 32 3-36 46-77 (509)
313 KOG1399|consensus 97.4 0.0011 2.4E-08 65.8 11.1 173 135-315 6-197 (448)
314 PRK11101 glpA sn-glycerol-3-ph 97.4 0.00015 3.3E-09 74.8 5.2 38 2-41 6-43 (546)
315 PRK08274 tricarballylate dehyd 97.4 0.00014 3E-09 73.9 4.8 34 2-37 4-37 (466)
316 PLN02463 lycopene beta cyclase 97.4 0.00073 1.6E-08 67.7 9.7 130 136-276 29-170 (447)
317 PRK07608 ubiquinone biosynthes 97.4 0.00045 9.8E-09 68.3 8.3 138 136-277 6-169 (388)
318 PRK10157 putative oxidoreducta 97.4 0.00078 1.7E-08 67.5 9.8 135 136-275 6-164 (428)
319 PRK07121 hypothetical protein; 97.4 0.00018 3.8E-09 73.6 5.2 37 2-40 20-56 (492)
320 PRK07333 2-octaprenyl-6-methox 97.4 0.00092 2E-08 66.5 10.2 51 224-277 119-169 (403)
321 TIGR02734 crtI_fam phytoene de 97.4 0.00014 2.9E-09 74.7 4.3 51 223-275 226-276 (502)
322 KOG1276|consensus 97.4 0.0002 4.3E-09 68.5 5.0 42 2-43 11-52 (491)
323 PRK12831 putative oxidoreducta 97.4 0.00053 1.2E-08 69.3 8.3 35 134-168 139-175 (464)
324 TIGR01984 UbiH 2-polyprenyl-6- 97.4 0.00045 9.7E-09 68.2 7.6 48 226-276 115-163 (382)
325 TIGR01988 Ubi-OHases Ubiquinon 97.4 0.00043 9.2E-09 68.3 7.4 50 225-277 115-165 (385)
326 TIGR01318 gltD_gamma_fam gluta 97.4 0.00029 6.4E-09 71.3 6.3 35 134-168 140-176 (467)
327 TIGR03143 AhpF_homolog putativ 97.4 0.001 2.2E-08 68.9 10.4 111 136-278 5-117 (555)
328 PLN02576 protoporphyrinogen ox 97.4 0.00019 4.2E-09 73.4 5.0 39 3-42 13-51 (496)
329 PRK06481 fumarate reductase fl 97.4 0.00019 4.1E-09 73.4 4.8 37 2-40 61-97 (506)
330 PRK05257 malate:quinone oxidor 97.4 0.00018 3.8E-09 73.1 4.5 38 2-39 5-42 (494)
331 PRK08849 2-octaprenyl-3-methyl 97.4 0.0015 3.2E-08 64.6 10.9 47 229-278 124-170 (384)
332 PRK08641 sdhA succinate dehydr 97.4 0.0002 4.3E-09 74.6 4.8 37 1-39 2-38 (589)
333 PF06039 Mqo: Malate:quinone o 97.4 0.00013 2.8E-09 71.0 3.1 73 229-305 195-274 (488)
334 PRK08244 hypothetical protein; 97.3 0.001 2.2E-08 68.0 9.9 134 136-277 3-161 (493)
335 PRK07190 hypothetical protein; 97.3 0.0009 1.9E-08 68.1 9.3 134 136-276 6-166 (487)
336 TIGR01316 gltA glutamate synth 97.3 0.0015 3.1E-08 66.0 10.7 91 3-109 273-389 (449)
337 PF00732 GMC_oxred_N: GMC oxid 97.3 0.00023 5.1E-09 67.5 4.4 37 3-40 1-37 (296)
338 PTZ00367 squalene epoxidase; P 97.3 0.00025 5.4E-09 73.1 4.8 34 2-37 33-66 (567)
339 TIGR01813 flavo_cyto_c flavocy 97.3 0.00026 5.6E-09 71.3 4.9 35 4-40 1-36 (439)
340 PLN02661 Putative thiazole syn 97.3 0.0026 5.6E-08 60.8 11.2 202 135-349 92-328 (357)
341 COG0493 GltD NADPH-dependent g 97.3 0.0002 4.4E-09 71.4 3.9 145 3-170 6-160 (457)
342 PRK07803 sdhA succinate dehydr 97.3 0.00024 5.3E-09 74.4 4.7 36 2-39 8-43 (626)
343 PLN02568 polyamine oxidase 97.3 0.0003 6.4E-09 72.2 5.1 42 2-43 5-49 (539)
344 TIGR02731 phytoene_desat phyto 97.3 0.00027 5.9E-09 71.4 4.8 37 4-42 1-37 (453)
345 TIGR00275 flavoprotein, HI0933 97.3 0.00089 1.9E-08 66.4 8.3 49 223-275 112-160 (400)
346 PTZ00363 rab-GDP dissociation 97.3 0.0003 6.5E-09 70.2 4.9 51 226-277 242-292 (443)
347 PF01494 FAD_binding_3: FAD bi 97.2 0.00064 1.4E-08 66.0 6.8 140 137-278 3-175 (356)
348 PRK12834 putative FAD-binding 97.2 0.00036 7.8E-09 72.2 5.1 34 2-37 4-37 (549)
349 PLN02464 glycerol-3-phosphate 97.2 0.00035 7.7E-09 73.1 5.0 38 3-42 72-109 (627)
350 PRK12837 3-ketosteroid-delta-1 97.2 0.00034 7.5E-09 71.7 4.9 36 2-40 7-42 (513)
351 TIGR01317 GOGAT_sm_gam glutama 97.2 0.00054 1.2E-08 69.7 6.1 34 135-168 143-178 (485)
352 PLN02852 ferredoxin-NADP+ redu 97.2 0.00075 1.6E-08 68.0 7.0 35 135-169 26-64 (491)
353 PRK08013 oxidoreductase; Provi 97.2 0.0015 3.2E-08 64.9 9.1 140 136-278 4-171 (400)
354 PRK13339 malate:quinone oxidor 97.2 0.00039 8.5E-09 70.2 4.9 37 3-39 7-43 (497)
355 PRK07057 sdhA succinate dehydr 97.2 0.00038 8.2E-09 72.5 4.9 35 2-38 12-46 (591)
356 PRK08850 2-octaprenyl-6-methox 97.2 0.00068 1.5E-08 67.5 6.6 46 229-277 125-170 (405)
357 PTZ00139 Succinate dehydrogena 97.2 0.00037 8.1E-09 72.9 4.8 36 2-39 29-64 (617)
358 PLN02697 lycopene epsilon cycl 97.2 0.0016 3.5E-08 66.5 9.0 129 136-275 109-248 (529)
359 PLN02927 antheraxanthin epoxid 97.2 0.0004 8.6E-09 72.3 4.6 34 2-37 81-114 (668)
360 PRK08255 salicylyl-CoA 5-hydro 97.2 0.00041 8.9E-09 74.5 4.8 36 3-38 1-36 (765)
361 PRK06475 salicylate hydroxylas 97.2 0.003 6.5E-08 62.8 10.6 139 136-278 3-170 (400)
362 PLN00128 Succinate dehydrogena 97.1 0.00044 9.5E-09 72.4 4.8 36 2-39 50-85 (635)
363 KOG2404|consensus 97.1 0.0014 2.9E-08 60.5 7.2 36 4-41 11-46 (477)
364 PRK12778 putative bifunctional 97.1 0.001 2.2E-08 71.7 7.5 33 135-167 431-465 (752)
365 PRK08020 ubiF 2-octaprenyl-3-m 97.1 0.0038 8.2E-08 61.8 11.1 48 227-277 123-171 (391)
366 PRK01438 murD UDP-N-acetylmura 97.1 0.0016 3.4E-08 66.4 8.5 79 3-113 17-96 (480)
367 PRK12844 3-ketosteroid-delta-1 97.1 0.00052 1.1E-08 71.0 5.0 38 2-41 6-43 (557)
368 KOG1335|consensus 97.1 0.0015 3.3E-08 61.6 7.4 99 3-113 212-320 (506)
369 PRK12835 3-ketosteroid-delta-1 97.1 0.00046 1E-08 71.7 4.6 38 2-41 11-48 (584)
370 COG2072 TrkA Predicted flavopr 97.1 0.018 4E-07 57.7 15.8 166 135-315 8-186 (443)
371 PRK09897 hypothetical protein; 97.1 0.0026 5.5E-08 65.0 9.6 137 136-275 2-166 (534)
372 PRK09078 sdhA succinate dehydr 97.1 0.00054 1.2E-08 71.5 4.7 35 2-38 12-46 (598)
373 PLN02676 polyamine oxidase 97.1 0.00067 1.4E-08 69.0 5.2 42 2-45 26-68 (487)
374 COG0562 Glf UDP-galactopyranos 97.1 0.00067 1.5E-08 62.6 4.7 37 3-41 2-38 (374)
375 KOG2853|consensus 97.1 0.0032 6.9E-08 58.6 9.0 36 3-38 87-124 (509)
376 PRK08626 fumarate reductase fl 97.1 0.00056 1.2E-08 72.0 4.6 36 2-39 5-40 (657)
377 TIGR02732 zeta_caro_desat caro 97.1 0.00059 1.3E-08 69.3 4.6 37 4-42 1-37 (474)
378 COG0644 FixC Dehydrogenases (f 97.1 0.0017 3.8E-08 64.3 7.9 139 136-276 4-153 (396)
379 COG0492 TrxB Thioredoxin reduc 97.1 0.0058 1.3E-07 57.8 10.9 111 136-278 4-118 (305)
380 PRK12810 gltD glutamate syntha 97.0 0.0011 2.3E-08 67.4 6.2 34 135-168 143-178 (471)
381 PRK08958 sdhA succinate dehydr 97.0 0.00066 1.4E-08 70.7 4.7 36 2-39 7-42 (588)
382 PRK12809 putative oxidoreducta 97.0 0.00098 2.1E-08 70.2 6.0 34 135-168 310-345 (639)
383 PRK12775 putative trifunctiona 97.0 0.0016 3.4E-08 71.9 7.7 34 135-168 430-465 (1006)
384 COG0578 GlpA Glycerol-3-phosph 97.0 0.00084 1.8E-08 67.4 5.0 42 2-45 12-53 (532)
385 PRK01438 murD UDP-N-acetylmura 97.0 0.0016 3.5E-08 66.3 7.3 76 135-278 16-93 (480)
386 PF01266 DAO: FAD dependent ox 97.0 0.0029 6.3E-08 61.4 8.9 51 223-277 154-205 (358)
387 KOG0685|consensus 97.0 0.00088 1.9E-08 65.1 4.8 45 3-48 22-66 (498)
388 PRK10015 oxidoreductase; Provi 97.0 0.0039 8.5E-08 62.5 9.7 138 136-276 6-165 (429)
389 PRK07364 2-octaprenyl-6-methox 97.0 0.0034 7.4E-08 62.6 9.3 140 135-278 18-184 (415)
390 PRK06183 mhpA 3-(3-hydroxyphen 97.0 0.004 8.7E-08 64.4 10.0 139 135-277 10-176 (538)
391 PRK07494 2-octaprenyl-6-methox 97.0 0.0025 5.4E-08 63.0 8.2 44 230-277 126-169 (388)
392 PTZ00188 adrenodoxin reductase 97.0 0.0024 5.2E-08 63.7 7.8 35 135-169 39-76 (506)
393 PRK05192 tRNA uridine 5-carbox 97.0 0.0043 9.3E-08 63.8 9.8 135 136-274 5-156 (618)
394 TIGR03315 Se_ygfK putative sel 97.0 0.0019 4.2E-08 70.2 7.7 34 135-168 537-572 (1012)
395 PRK08243 4-hydroxybenzoate 3-m 97.0 0.002 4.4E-08 63.8 7.4 135 136-278 3-166 (392)
396 KOG2614|consensus 97.0 0.00095 2.1E-08 63.9 4.7 37 1-39 1-37 (420)
397 PRK12814 putative NADPH-depend 96.9 0.0017 3.7E-08 68.6 6.8 34 135-168 193-228 (652)
398 PLN02815 L-aspartate oxidase 96.9 0.00085 1.9E-08 69.7 4.5 36 2-40 29-64 (594)
399 COG1231 Monoamine oxidase [Ami 96.9 0.0011 2.3E-08 64.5 4.6 38 2-41 7-44 (450)
400 PF12831 FAD_oxidored: FAD dep 96.9 0.001 2.2E-08 66.6 4.7 138 137-288 1-159 (428)
401 PRK12845 3-ketosteroid-delta-1 96.9 0.0011 2.4E-08 68.6 4.9 38 2-42 16-53 (564)
402 PRK12769 putative oxidoreducta 96.9 0.0015 3.3E-08 69.1 6.1 35 134-168 326-362 (654)
403 KOG2960|consensus 96.9 0.00027 5.8E-09 61.0 0.4 38 3-40 77-114 (328)
404 PF13434 K_oxygenase: L-lysine 96.9 0.0054 1.2E-07 59.2 9.4 37 3-39 191-227 (341)
405 COG1635 THI4 Ribulose 1,5-bisp 96.9 0.0065 1.4E-07 53.3 8.7 191 135-348 30-259 (262)
406 PLN02529 lysine-specific histo 96.9 0.0011 2.4E-08 69.9 4.8 38 3-42 161-198 (738)
407 PLN02487 zeta-carotene desatur 96.9 0.0012 2.5E-08 68.0 4.9 37 3-41 76-112 (569)
408 TIGR01789 lycopene_cycl lycope 96.9 0.0066 1.4E-07 59.5 10.0 129 137-277 1-140 (370)
409 PRK06617 2-octaprenyl-6-methox 96.9 0.0034 7.4E-08 61.8 8.0 45 230-278 119-163 (374)
410 TIGR01790 carotene-cycl lycope 96.9 0.0058 1.3E-07 60.4 9.7 130 137-275 1-141 (388)
411 PRK06126 hypothetical protein; 96.9 0.0068 1.5E-07 62.9 10.5 34 135-168 7-42 (545)
412 PRK06185 hypothetical protein; 96.8 0.005 1.1E-07 61.3 9.1 140 135-277 6-171 (407)
413 PLN02328 lysine-specific histo 96.8 0.0013 2.9E-08 69.8 4.8 38 3-42 239-276 (808)
414 PLN02612 phytoene desaturase 96.8 0.0015 3.3E-08 67.7 4.9 50 223-273 315-364 (567)
415 PRK07538 hypothetical protein; 96.8 0.0051 1.1E-07 61.4 8.5 33 137-169 2-36 (413)
416 PF13454 NAD_binding_9: FAD-NA 96.8 0.011 2.5E-07 50.1 9.5 42 229-273 113-155 (156)
417 PRK08132 FAD-dependent oxidore 96.8 0.0067 1.5E-07 62.9 9.6 135 135-277 23-187 (547)
418 PRK12839 hypothetical protein; 96.8 0.0017 3.6E-08 67.4 5.1 38 2-41 8-45 (572)
419 PRK02106 choline dehydrogenase 96.7 0.0016 3.6E-08 67.6 4.9 36 2-38 5-40 (560)
420 PRK11445 putative oxidoreducta 96.7 0.011 2.5E-07 57.5 10.5 134 137-277 3-159 (351)
421 COG2907 Predicted NAD/FAD-bind 96.7 0.0012 2.7E-08 61.5 3.3 40 3-45 9-48 (447)
422 TIGR02023 BchP-ChlP geranylger 96.7 0.0038 8.1E-08 61.8 7.1 131 137-277 2-157 (388)
423 PTZ00306 NADH-dependent fumara 96.7 0.0019 4E-08 72.6 4.8 38 2-41 409-446 (1167)
424 TIGR02462 pyranose_ox pyranose 96.7 0.0021 4.6E-08 65.6 4.8 37 3-41 1-37 (544)
425 TIGR00136 gidA glucose-inhibit 96.6 0.012 2.6E-07 60.5 9.8 138 137-276 2-155 (617)
426 PF05834 Lycopene_cycl: Lycope 96.6 0.0094 2E-07 58.6 8.9 125 138-276 2-143 (374)
427 PRK12843 putative FAD-binding 96.6 0.0027 5.8E-08 66.1 5.1 40 2-43 16-55 (578)
428 TIGR02360 pbenz_hydroxyl 4-hyd 96.6 0.0083 1.8E-07 59.4 8.3 137 135-278 2-166 (390)
429 TIGR00137 gid_trmFO tRNA:m(5)U 96.5 0.0066 1.4E-07 60.0 7.2 33 137-169 2-36 (433)
430 PRK12771 putative glutamate sy 96.5 0.0044 9.6E-08 64.5 6.4 35 134-168 136-172 (564)
431 PLN02927 antheraxanthin epoxid 96.5 0.016 3.5E-07 60.5 10.2 42 233-277 209-250 (668)
432 PRK05732 2-octaprenyl-6-methox 96.5 0.0067 1.4E-07 60.1 7.2 46 229-277 126-171 (395)
433 TIGR02028 ChlP geranylgeranyl 96.4 0.02 4.3E-07 56.8 10.1 31 137-167 2-34 (398)
434 TIGR01372 soxA sarcosine oxida 96.4 0.02 4.3E-07 63.5 11.0 87 3-109 318-413 (985)
435 TIGR01989 COQ6 Ubiquinone bios 96.4 0.0091 2E-07 60.1 7.5 49 230-278 134-186 (437)
436 PRK13984 putative oxidoreducta 96.4 0.0056 1.2E-07 64.3 6.2 35 134-168 282-318 (604)
437 KOG2844|consensus 96.4 0.01 2.2E-07 60.1 7.5 47 227-276 198-244 (856)
438 COG1148 HdrA Heterodisulfide r 96.3 0.018 4E-07 56.3 8.5 36 135-170 124-161 (622)
439 PRK06996 hypothetical protein; 96.3 0.018 3.9E-07 57.2 9.0 49 223-274 122-173 (398)
440 COG1251 NirB NAD(P)H-nitrite r 96.3 0.018 3.8E-07 59.4 8.7 47 227-278 70-116 (793)
441 PLN03000 amine oxidase 96.3 0.0047 1E-07 65.9 4.8 39 3-43 185-223 (881)
442 TIGR01811 sdhA_Bsu succinate d 96.3 0.0033 7.2E-08 65.6 3.7 31 5-37 1-31 (603)
443 COG3380 Predicted NAD/FAD-depe 96.3 0.015 3.2E-07 52.8 7.1 125 137-273 3-158 (331)
444 COG3573 Predicted oxidoreducta 96.2 0.0057 1.2E-07 56.8 4.5 34 2-37 5-38 (552)
445 KOG0399|consensus 96.2 0.0071 1.5E-07 64.5 5.5 36 135-170 1785-1822(2142)
446 PLN02976 amine oxidase 96.2 0.0054 1.2E-07 68.1 4.8 39 2-42 693-731 (1713)
447 KOG1346|consensus 96.2 0.017 3.6E-07 55.4 7.3 99 3-111 348-453 (659)
448 COG2303 BetA Choline dehydroge 96.2 0.0048 1E-07 63.6 4.1 35 2-38 7-41 (542)
449 PRK06567 putative bifunctional 96.2 0.0065 1.4E-07 65.3 5.1 33 134-166 382-416 (1028)
450 TIGR01810 betA choline dehydro 96.0 0.0062 1.3E-07 62.9 4.1 34 4-38 1-34 (532)
451 PRK06481 fumarate reductase fl 96.0 0.048 1E-06 55.9 10.4 54 223-278 197-255 (506)
452 PLN00093 geranylgeranyl diphos 96.0 0.051 1.1E-06 54.8 10.3 33 135-167 39-73 (450)
453 TIGR01813 flavo_cyto_c flavocy 95.9 0.057 1.2E-06 54.4 10.4 51 223-274 137-191 (439)
454 COG0445 GidA Flavin-dependent 95.9 0.0073 1.6E-07 60.0 3.6 137 136-274 5-157 (621)
455 PRK14106 murD UDP-N-acetylmura 95.8 0.026 5.6E-07 57.1 7.5 80 2-112 5-85 (450)
456 PRK08274 tricarballylate dehyd 95.8 0.054 1.2E-06 55.0 9.7 49 223-273 138-190 (466)
457 PRK08294 phenol 2-monooxygenas 95.7 0.077 1.7E-06 55.9 10.7 35 135-169 32-69 (634)
458 PLN02785 Protein HOTHEAD 95.7 0.011 2.4E-07 61.4 4.4 34 2-38 55-88 (587)
459 PRK12266 glpD glycerol-3-phosp 95.7 0.11 2.4E-06 53.2 11.7 48 226-276 165-217 (508)
460 COG1206 Gid NAD(FAD)-utilizing 95.7 0.026 5.7E-07 52.5 6.2 35 2-38 3-37 (439)
461 KOG2852|consensus 95.7 0.03 6.4E-07 51.2 6.4 35 3-37 11-49 (380)
462 PF04820 Trp_halogenase: Trypt 95.6 0.068 1.5E-06 53.9 9.4 51 224-276 162-212 (454)
463 KOG0042|consensus 95.6 0.0053 1.2E-07 60.6 1.4 41 2-44 67-107 (680)
464 KOG1238|consensus 95.6 0.013 2.9E-07 59.5 4.2 37 2-39 57-93 (623)
465 PLN02985 squalene monooxygenas 95.5 0.086 1.9E-06 54.1 9.7 33 135-167 43-77 (514)
466 PF00890 FAD_binding_2: FAD bi 95.3 0.069 1.5E-06 53.4 8.5 53 222-276 147-204 (417)
467 PF13450 NAD_binding_8: NAD(P) 95.3 0.025 5.5E-07 40.4 3.9 31 140-170 1-33 (68)
468 PRK06175 L-aspartate oxidase; 95.3 0.12 2.7E-06 51.8 10.1 32 136-167 5-37 (433)
469 PF01946 Thi4: Thi4 family; PD 95.1 0.11 2.3E-06 46.0 7.7 137 135-277 17-167 (230)
470 TIGR02485 CobZ_N-term precorri 95.0 0.016 3.5E-07 58.2 3.0 30 7-38 1-30 (432)
471 PRK13369 glycerol-3-phosphate 95.0 0.096 2.1E-06 53.7 8.5 47 227-276 166-216 (502)
472 KOG0404|consensus 95.0 0.1 2.2E-06 46.0 7.2 46 227-277 81-126 (322)
473 PRK08401 L-aspartate oxidase; 94.9 0.34 7.3E-06 49.2 12.1 49 224-276 128-176 (466)
474 PRK13339 malate:quinone oxidor 94.9 0.16 3.4E-06 51.7 9.5 56 227-286 196-256 (497)
475 KOG2755|consensus 94.9 0.013 2.9E-07 52.7 1.5 26 252-277 81-106 (334)
476 KOG2614|consensus 94.7 0.17 3.7E-06 48.9 8.7 34 136-169 3-38 (420)
477 COG4529 Uncharacterized protei 94.6 0.17 3.6E-06 50.1 8.4 35 136-170 2-41 (474)
478 KOG3851|consensus 94.5 0.04 8.6E-07 51.1 3.9 37 237-278 112-148 (446)
479 PRK07804 L-aspartate oxidase; 94.5 0.22 4.7E-06 51.6 9.8 32 136-167 17-50 (541)
480 PF01210 NAD_Gly3P_dh_N: NAD-d 94.4 0.056 1.2E-06 45.9 4.4 32 4-37 1-32 (157)
481 KOG4254|consensus 94.4 0.028 6.1E-07 54.5 2.7 49 223-273 271-319 (561)
482 KOG3855|consensus 94.3 0.061 1.3E-06 51.7 4.6 37 2-38 36-74 (481)
483 TIGR01812 sdhA_frdA_Gneg succi 94.2 0.35 7.6E-06 50.4 10.7 49 225-275 138-191 (566)
484 PF13241 NAD_binding_7: Putati 94.2 0.05 1.1E-06 42.6 3.3 33 3-37 8-40 (103)
485 COG1004 Ugd Predicted UDP-gluc 94.1 0.14 3.1E-06 49.3 6.7 34 3-38 1-34 (414)
486 PRK06263 sdhA succinate dehydr 94.0 0.06 1.3E-06 55.8 4.5 34 2-38 7-40 (543)
487 PRK07573 sdhA succinate dehydr 94.0 0.45 9.8E-06 50.2 11.0 48 226-275 180-232 (640)
488 KOG3923|consensus 94.0 0.074 1.6E-06 48.9 4.3 39 2-40 3-46 (342)
489 PTZ00367 squalene epoxidase; P 93.9 0.14 3E-06 53.0 6.9 31 136-166 34-66 (567)
490 PRK05335 tRNA (uracil-5-)-meth 93.9 0.071 1.5E-06 52.5 4.5 34 136-169 3-38 (436)
491 TIGR00551 nadB L-aspartate oxi 93.9 0.4 8.6E-06 49.0 10.1 51 224-276 136-190 (488)
492 PRK07121 hypothetical protein; 93.8 0.44 9.5E-06 48.8 10.3 52 223-275 184-239 (492)
493 KOG2852|consensus 93.8 0.26 5.5E-06 45.3 7.3 32 135-166 10-49 (380)
494 KOG2311|consensus 93.8 0.13 2.8E-06 50.4 5.8 30 136-165 29-60 (679)
495 PLN02815 L-aspartate oxidase 93.7 0.076 1.7E-06 55.4 4.6 56 290-346 376-431 (594)
496 COG3634 AhpF Alkyl hydroperoxi 93.7 0.079 1.7E-06 49.8 4.1 113 135-275 211-325 (520)
497 TIGR01811 sdhA_Bsu succinate d 93.7 0.074 1.6E-06 55.7 4.4 56 289-346 368-423 (603)
498 COG0569 TrkA K+ transport syst 93.7 0.08 1.7E-06 47.9 4.0 34 3-38 1-34 (225)
499 PRK08626 fumarate reductase fl 93.6 0.064 1.4E-06 56.7 3.9 57 289-346 370-427 (657)
500 TIGR01470 cysG_Nterm siroheme 93.6 0.11 2.4E-06 46.2 4.8 33 3-37 10-42 (205)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.7e-56 Score=436.21 Aligned_cols=382 Identities=23% Similarity=0.309 Sum_probs=303.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC-Cccccccccccccccc--------------c----------ccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS-GIVKAVTKTVPVTKLL--------------S----------DIT 56 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~-~~~~~~~~~~~~~~~~--------------~----------~~~ 56 (454)
+||+||||+||||..||.+++++ |.+++++|+. ...+.|.++.+.+... . .++
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~--G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQL--GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 69999999999999999999999 7779999999 6888888775543211 0 112
Q ss_pred hhh-------------hHHHHH-hc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--Cceeee
Q psy1545 57 VEE-------------TDANKF-EG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--PHVITI 119 (454)
Q Consensus 57 ~~~-------------~~~~~~-~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~~~~~ 119 (454)
+.. ...+.+ .. +++++.+++.+++++...|...+.+++.++++|||||++|+.|+++ ++.. +
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~-~ 160 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGAR-I 160 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCe-E
Confidence 210 111222 23 9999999999999665444322237899999999999999999877 3322 4
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
.+.++...+.+. |++++|||||++|+|+|..++ |++||++++.+++++. +|+++++.+.+.|.+
T Consensus 161 ~~s~~~l~~~~l---P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~---------- 226 (454)
T COG1249 161 LDSSDALFLLEL---PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEK---------- 226 (454)
T ss_pred EechhhcccccC---CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHHh----------
Confidence 455555444433 999999999999999999997 9999999999999995 899999999999865
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc--EEecCEEEEeeccCc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH--THACDIVVSAIGVVP 275 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~--~~~~D~vi~a~G~~p 275 (454)
.|+++++++.+++++..++ .+.+.+++|. ++++|.+++|+|++|
T Consensus 227 -------------------------------~gv~i~~~~~v~~~~~~~~---~v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 227 -------------------------------GGVKILLNTKVTAVEKKDD---GVLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred -------------------------------CCeEEEccceEEEEEecCC---eEEEEEecCCCCEEEeeEEEEccCCcc
Confidence 8999999999999988763 3778888875 799999999999999
Q ss_pred Ccc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcce
Q psy1545 276 NSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354 (454)
Q Consensus 276 ~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (454)
|++ +-++..|++++++|+|.||++++|++|||||+|||++.+ +++|.|.+||++||.||++.......+
T Consensus 273 n~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~----------~Lah~A~~eg~iaa~~i~g~~~~~~d~ 342 (454)
T COG1249 273 NTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGP----------MLAHVAMAEGRIAAENIAGGKRTPIDY 342 (454)
T ss_pred CCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCc----------ccHhHHHHHHHHHHHHHhCCCCCcCcc
Confidence 998 446778999999999999977889999999999998865 489999999999999999832223335
Q ss_pred eccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE----------eecCCccEEEEEE--ECCeEEEEEEEcCC-
Q psy1545 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL----------RVTRGEEYIKLVM--KDGRMQGAVLIGET- 419 (454)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~----------~~~~~~~~~k~~~--~~~~i~G~~~~g~~- 419 (454)
..+|+.+|++| ++++||+++.++....++ +.. ......||+|+++ ++++|+|+|++|++
T Consensus 343 ~~iP~~ift~P------eia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A 416 (454)
T COG1249 343 RLIPSVVFTDP------EIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGA 416 (454)
T ss_pred cCCCEEEECCC------cceeeeCCHHHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCH
Confidence 56899999988 899999999887644332 211 0123579999999 47999999999999
Q ss_pred -chHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 420 -EIEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 420 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
+.++.++.+|.++++.+++.+ ..++++++++
T Consensus 417 ~ElI~~~~~a~~~g~t~~~~~~-~i~~HPT~sE 448 (454)
T COG1249 417 SELINEIALAIEMGATAEDLAL-TIHAHPTLSE 448 (454)
T ss_pred HHHHHHHHHHHHCCCcHHHHhc-CCCCCCChHH
Confidence 468999999999999999843 4444444443
No 2
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=7.6e-53 Score=420.37 Aligned_cols=391 Identities=18% Similarity=0.289 Sum_probs=299.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc-cccccccc-cccc-chhhhHHHHH-hc-CcEEE-cceE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT-KTVPVTKL-LSDI-TVEETDANKF-EG-LCTVI-VDTV 76 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~-~~-~i~~~-~~~v 76 (454)
++|||||||+||++||..|++++++.+|+|||+++.+.+.. ..+.+... .... +......+.+ .+ +++++ .++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 48999999999999999999987889999999998765432 12222111 1111 1111111233 34 89986 5799
Q ss_pred EEEeCcccEEEeccC---c--EEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHhh--cCCeEEEEcCchhHH
Q psy1545 77 AAIDPRVNCVITEKQ---N--RIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGIAT 148 (454)
Q Consensus 77 ~~i~~~~~~v~~~~g---~--~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~~--~~~~vvVvG~G~~g~ 148 (454)
+.+|++++.|.+.++ + ++.||+||||||++|+.|+++ ++++.+.+..++..+.+.+. .+++++|||+|++|+
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~ 161 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL 161 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 999999998887643 2 478999999999999988877 67777777778877776543 378999999999999
Q ss_pred HHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCc
Q psy1545 149 ELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS 226 (454)
Q Consensus 149 e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l 226 (454)
|+|..|+ |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 162 E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~l~~--------------------------------------- 201 (438)
T PRK13512 162 EVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDK--------------------------------------- 201 (438)
T ss_pred HHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHHHHh---------------------------------------
Confidence 9999986 9999999999988764 688887777777754
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~ 306 (454)
.||++++++++++++.. .+.+++|+++++|.|++|+|++|+.+ +++..++.++++|+|.||+++||++||
T Consensus 202 --~gI~i~~~~~v~~i~~~-------~v~~~~g~~~~~D~vl~a~G~~pn~~-~l~~~gl~~~~~G~i~Vd~~~~t~~~~ 271 (438)
T PRK13512 202 --REIPYRLNEEIDAINGN-------EVTFKSGKVEHYDMIIEGVGTHPNSK-FIESSNIKLDDKGFIPVNDKFETNVPN 271 (438)
T ss_pred --cCCEEEECCeEEEEeCC-------EEEECCCCEEEeCEEEECcCCCcChH-HHHhcCcccCCCCcEEECCCcccCCCC
Confidence 89999999999999642 36677888899999999999999998 888888888888999999999999999
Q ss_pred eeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC
Q psy1545 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN 386 (454)
Q Consensus 307 Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ 386 (454)
|||+|||+.......+.+...++++.|.+||+++|+||++... ..++.....+...+++++++++|+++.++...
T Consensus 272 IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~-----~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~ 346 (438)
T PRK13512 272 IYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT-----IEFKGFLGNNIVKFFDYTFASVGVKPNELKQF 346 (438)
T ss_pred EEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCc-----cccCCcccceEEEEcCceEEeecCCHHHHccC
Confidence 9999999975433333333457888999999999999987421 11111112223456777999999999877644
Q ss_pred CceEEEe---------ecCCccEEEEEE--ECCeEEEEEEEcCCc---hHHHHHHHHhcCCCcchhhhh--ccCCCCC
Q psy1545 387 DYEILLR---------VTRGEEYIKLVM--KDGRMQGAVLIGETE---IEEMCENLILNQLDLTDIADD--LLNPNID 448 (454)
Q Consensus 387 ~~~~~~~---------~~~~~~~~k~~~--~~~~i~G~~~~g~~~---~~~~~~~~i~~~~~~~~~~~~--~~~~~~~ 448 (454)
++..... .....+|+|+++ ++++|+|+|++|++. .++.++.+|++++|++++.+. .+||+++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~ 424 (438)
T PRK13512 347 DYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYS 424 (438)
T ss_pred CcEEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence 4332211 123468999999 479999999999862 578999999999999999764 3576655
No 3
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.9e-52 Score=417.50 Aligned_cols=377 Identities=20% Similarity=0.262 Sum_probs=288.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc---------------------c--ccch-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL---------------------S--DITV- 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~---------------------~--~~~~- 57 (454)
+|||+||||||||++||..++++ |++|+|+|+....+.|.+..+.+... . ..++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH--GAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHH
Confidence 68999999999999999999998 99999999987666666553332210 0 0111
Q ss_pred -------------hhhHHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCCCceeeeeccc
Q psy1545 58 -------------EETDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDTD 123 (454)
Q Consensus 58 -------------~~~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~~~~~~~~~~ 123 (454)
.......+.+ +++++.+++..++++...+. .+|+.++||+||||||++|..|++++.-. ..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~p~i~G~~~-~~~~~ 157 (446)
T TIGR01424 80 KLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQKPNLPGHEL-GITSN 157 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCCCCCCCccc-eechH
Confidence 0111122334 89999999999998765554 35678999999999999999888872111 22444
Q ss_pred hHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcc
Q psy1545 124 SVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMR 201 (454)
Q Consensus 124 ~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 201 (454)
++..+.+ .+++++|||+|++|+|+|..+. |.+|+++++++.+++. +++++...+.+.+.+
T Consensus 158 ~~~~l~~---~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~-------------- 219 (446)
T TIGR01424 158 EAFHLPT---LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEG-------------- 219 (446)
T ss_pred Hhhcccc---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHH--------------
Confidence 4544432 3899999999999999999886 9999999999988875 677777777766654
Q ss_pred cccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccc-
Q psy1545 202 YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQ- 280 (454)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~- 280 (454)
.||++++++.+.+++..++ ...+.+.+|+++++|.|++|+|++|+.+ .
T Consensus 220 ---------------------------~gV~i~~~~~v~~i~~~~~---~~~v~~~~g~~i~~D~viva~G~~pn~~-~l 268 (446)
T TIGR01424 220 ---------------------------RGIRIHPQTSLTSITKTDD---GLKVTLSHGEEIVADVVLFATGRSPNTK-GL 268 (446)
T ss_pred ---------------------------CCCEEEeCCEEEEEEEcCC---eEEEEEcCCcEeecCEEEEeeCCCcCCC-cC
Confidence 8999999999999986542 3566777888899999999999999987 4
Q ss_pred -cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccce
Q psy1545 281 -VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSF 359 (454)
Q Consensus 281 -~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~ 359 (454)
++..+++++++|+|.||+++||++|||||+|||++. .++++.|.+||++||+||++.......+..+|.
T Consensus 269 ~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~----------~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~ 338 (446)
T TIGR01424 269 GLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDR----------INLTPVAIMEATCFANTEFGNNPTKFDHDLIAT 338 (446)
T ss_pred CccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCC----------ccchhHHHHHHHHHHHHHhcCCCCccCcCCCCe
Confidence 466778888889999999999999999999999864 368889999999999999974321122234566
Q ss_pred eeeeeeeeecCeEEEEeecccCCcCCC---CceEEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCCc--hH
Q psy1545 360 EMFTHMTKFFGYKVILLGLFNGQTLEN---DYEILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGETE--IE 422 (454)
Q Consensus 360 ~~~~~~~~~~~~~~~~vG~~~~~~~~~---~~~~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~~--~~ 422 (454)
.+|+.| +++++|+++.++... ++.+... ....++|+|+++ ++++|+|+|++|++. .+
T Consensus 339 ~if~~p------~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i 412 (446)
T TIGR01424 339 AVFSQP------PLGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEII 412 (446)
T ss_pred EEeCCc------hhEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 666655 899999998776533 2221111 123468999999 489999999999873 57
Q ss_pred HHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 423 EMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 423 ~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
+.++.+|++++|++|+.+.++ ||++
T Consensus 413 ~~~~~ai~~~~t~~~l~~~~~~hPt~ 438 (446)
T TIGR01424 413 QGIAIALKMGATKADFDSTVGIHPSS 438 (446)
T ss_pred HHHHHHHHcCCCHHHHhhccccCCCh
Confidence 899999999999999977553 5554
No 4
>PLN02507 glutathione reductase
Probab=100.00 E-value=3.6e-52 Score=419.93 Aligned_cols=380 Identities=19% Similarity=0.252 Sum_probs=291.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC----------CCccccccccccccccc-------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP----------SGIVKAVTKTVPVTKLL------------------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~----------~~~~~~~~~~~~~~~~~------------------- 52 (454)
+||++||||||||+.||..++++ |.+|+|||+ +...+.|.++.+.+...
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~--G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANF--GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 48999999999999999999998 999999996 34555565543322110
Q ss_pred -----cccchhh----------h---HH-HHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCC
Q psy1545 53 -----SDITVEE----------T---DA-NKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKI 110 (454)
Q Consensus 53 -----~~~~~~~----------~---~~-~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~ 110 (454)
..+++.. + .. ..+.. +++++.+++.+++++...|.+.+|+ .+.||+||||||++|+.|
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p 182 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP 182 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence 0111111 0 01 11233 8999999999999998888877775 588999999999999988
Q ss_pred CCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 111 WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
++++.- ...+.+++..+.. .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 183 ~ipG~~-~~~~~~~~~~l~~---~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~- 256 (499)
T PLN02507 183 NIPGKE-LAITSDEALSLEE---LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRAVVARNLEG- 256 (499)
T ss_pred CCCCcc-ceechHHhhhhhh---cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHHHHHHHHHh-
Confidence 887211 1235566665544 3899999999999999999986 9999999999988875 788888888777755
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEE
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi 268 (454)
.||++++++.+++++..++ .+.+.+.+|+++++|.|+
T Consensus 257 ----------------------------------------~GI~i~~~~~V~~i~~~~~---~~~v~~~~g~~i~~D~vl 293 (499)
T PLN02507 257 ----------------------------------------RGINLHPRTNLTQLTKTEG---GIKVITDHGEEFVADVVL 293 (499)
T ss_pred ----------------------------------------CCCEEEeCCEEEEEEEeCC---eEEEEECCCcEEEcCEEE
Confidence 8999999999999986542 356777788889999999
Q ss_pred EeeccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 269 SAIGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 269 ~a~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+++|++|+.+ + ++..+++++++|+|.||+++||+.|||||+|||++.. .+++.|.+||++||+||++
T Consensus 294 ~a~G~~pn~~-~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g 362 (499)
T PLN02507 294 FATGRAPNTK-RLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFG 362 (499)
T ss_pred EeecCCCCCC-CCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcC
Confidence 9999999998 5 4567888888899999999999999999999998743 5788999999999999987
Q ss_pred CCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC---CceEEE---e-------ecCCccEEEEEE--ECCeEE
Q psy1545 347 AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN---DYEILL---R-------VTRGEEYIKLVM--KDGRMQ 411 (454)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~---~~~~~~---~-------~~~~~~~~k~~~--~~~~i~ 411 (454)
.....+.+...|..+|+.+ +++.+|+++.++... .+.+.. . .....+|+|+++ ++++|+
T Consensus 363 ~~~~~~~~~~~p~~if~~p------~ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~il 436 (499)
T PLN02507 363 GQPTKPDYENVACAVFCIP------PLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVL 436 (499)
T ss_pred CCCCcCCCCCCCeEEECCC------ccEEEeCCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEE
Confidence 4322222233456666655 899999998766532 122111 0 112457999999 489999
Q ss_pred EEEEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 412 GAVLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 412 G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
|+|++|++. .++.++.+|++++|++|+.+.+ +|++++.
T Consensus 437 G~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~-~~hPt~~ 476 (499)
T PLN02507 437 GASMCGPDAPEIMQGIAVALKCGATKAQFDSTV-GIHPSAA 476 (499)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcC-cCCCChH
Confidence 999999873 5789999999999999997755 3444443
No 5
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.8e-51 Score=411.21 Aligned_cols=376 Identities=20% Similarity=0.275 Sum_probs=286.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c-----ccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S-----DITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~-----~~~~ 57 (454)
+|||+||||||||++||..|+++ |.+|+|||++...+.|.++.+.+... . ..++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH--GAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCcEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 58999999999999999999998 99999999987777676654433210 0 0111
Q ss_pred hh----------h----HHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCC-CCCCceeeeec
Q psy1545 58 EE----------T----DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI-WYSPHVITIRD 121 (454)
Q Consensus 58 ~~----------~----~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~-~~~~~~~~~~~ 121 (454)
.. . ....+.+ +++++.+++...+. ++|.+ +++.+.||+||||||++|+.| +++.... ..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~--~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~-~~~ 155 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKD--GTVEV-NGRDYTAPHILIATGGKPSFPENIPGAEL-GTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCce-eEc
Confidence 11 1 1122333 89999888877654 45655 566899999999999999988 6762211 234
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
.+++..+.. .+++++|||||++|+|+|..|+ |.+||++++++++++. +|+++.+.+.+.+.+
T Consensus 156 ~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~~~~~~~~~l~~------------ 219 (450)
T TIGR01421 156 SDGFFALEE---LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSMISETITEEYEK------------ 219 (450)
T ss_pred HHHhhCccc---cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHHHHHHHHHHHHH------------
Confidence 455544433 3899999999999999999987 9999999999998874 788888888887755
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC-cEEecCEEEEeeccCcCcc
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-HTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-~~~~~D~vi~a~G~~p~~~ 278 (454)
.||++++++.+++++.+.+ ..+.+.+++| +++++|.|++|+|++|+++
T Consensus 220 -----------------------------~gI~i~~~~~v~~i~~~~~--~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 220 -----------------------------EGINVHKLSKPVKVEKTVE--GKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred -----------------------------cCCEEEcCCEEEEEEEeCC--ceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 8999999999999986532 1356777778 6799999999999999997
Q ss_pred cc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC-Cccee
Q psy1545 279 IQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN-EPVIQ 355 (454)
Q Consensus 279 ~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~ 355 (454)
+ ++..+++++++|+|.||+++||++|||||+|||++.+ .+++.|..||+.+|+||++.... ...+.
T Consensus 269 -~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 337 (450)
T TIGR01421 269 -GLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKTDDKLDYN 337 (450)
T ss_pred -cCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCCCCccCcc
Confidence 5 4667888888999999999999999999999999743 57889999999999999864211 11223
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCC-C---ceEEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEN-D---YEILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-~---~~~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
..|..+|+.| +++++|+++.++... + +..... .....+|+|+++ ++++|||+|++|+.
T Consensus 338 ~~p~~~f~~p------~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 411 (450)
T TIGR01421 338 NVPTVVFSHP------PIGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDG 411 (450)
T ss_pred cCCeEEeCCC------ceEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 4555566555 899999999876432 1 221111 123568999999 48999999999977
Q ss_pred --chHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 420 --EIEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 420 --~~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
+.++.++.+|++++|++|+.+.. .||++
T Consensus 412 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 442 (450)
T TIGR01421 412 VDEMLQGFAVAIKMGATKADFDNTVAIHPTS 442 (450)
T ss_pred HHHHHHHHHHHHHCCCCHHHHhhcccCCCCh
Confidence 35789999999999999997765 35554
No 6
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=9e-52 Score=415.20 Aligned_cols=378 Identities=20% Similarity=0.254 Sum_probs=286.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc--------------------c----cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL--------------------L----SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~--------------------~----~~~~~ 57 (454)
+||++||||||||++||..|+++ |.+|+|||++...+.|.++.+.+.. + ...++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~--G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY--GAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence 68999999999999999999998 9999999998666656554332211 0 00111
Q ss_pred h--------------hhHHHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCCCceeeeecc
Q psy1545 58 E--------------ETDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDT 122 (454)
Q Consensus 58 ~--------------~~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~~~~~~~~~ 122 (454)
. ......+.+ +++++.++++++++. +|.+ +++++.||+||||||++|+.|++++. ..+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~--~v~~-~g~~~~~d~lViATGs~p~~p~i~g~-~~~~~~ 157 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAH--TVEV-NGERYTADHILIATGGRPSIPDIPGA-EYGITS 157 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--EEEE-CCEEEEeCEEEEecCCCCCCCCCCCc-ceeEch
Confidence 1 001112333 899999999998764 5666 67789999999999999999888721 112334
Q ss_pred chHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhc
Q psy1545 123 DSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200 (454)
Q Consensus 123 ~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 200 (454)
.++..+.. .+++++|||+|.+|+|+|..+. |.+|+++++++++++. +++++...+.+.+.+
T Consensus 158 ~~~~~~~~---~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~L~~------------- 220 (450)
T PRK06116 158 DGFFALEE---LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDIRETLVEEMEK------------- 220 (450)
T ss_pred hHhhCccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHHHHHHHHHHHH-------------
Confidence 44443332 3799999999999999999986 9999999999988764 677777777777654
Q ss_pred ccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccc
Q psy1545 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQ 280 (454)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~ 280 (454)
.||++++++++.+++.+++ ..+.+.+.+|+++++|.|++|+|++|+.+ .
T Consensus 221 ----------------------------~GV~i~~~~~V~~i~~~~~--g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~-~ 269 (450)
T PRK06116 221 ----------------------------KGIRLHTNAVPKAVEKNAD--GSLTLTLEDGETLTVDCLIWAIGREPNTD-G 269 (450)
T ss_pred ----------------------------CCcEEECCCEEEEEEEcCC--ceEEEEEcCCcEEEeCEEEEeeCCCcCCC-C
Confidence 8999999999999987542 23567788888999999999999999997 4
Q ss_pred --cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC-CCcceecc
Q psy1545 281 --VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK-NEPVIQDF 357 (454)
Q Consensus 281 --~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~~~~~ 357 (454)
++..+++++++|+|.||+++||++|||||+|||+.. +++++.|..||+.||+||++... ....+..+
T Consensus 270 l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~ 339 (450)
T PRK06116 270 LGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGR----------VELTPVAIAAGRRLSERLFNNKPDEKLDYSNI 339 (450)
T ss_pred CCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCC----------cCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCC
Confidence 456688888899999999999999999999999863 35788999999999999997432 11222345
Q ss_pred ceeeeeeeeeecCeEEEEeecccCCcCCCC----ceEEE---e-------ecCCccEEEEEE--ECCeEEEEEEEcCC--
Q psy1545 358 SFEMFTHMTKFFGYKVILLGLFNGQTLEND----YEILL---R-------VTRGEEYIKLVM--KDGRMQGAVLIGET-- 419 (454)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~----~~~~~---~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~-- 419 (454)
|..+|+.| +++++|+++.++...+ +.+.. . .....+|+|+++ ++++|+|+|++|+.
T Consensus 340 p~~if~~p------~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~ 413 (450)
T PRK06116 340 PTVVFSHP------PIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGAD 413 (450)
T ss_pred CeEEeCCC------ccEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHH
Confidence 66666655 8999999997765332 22111 0 123578999999 47999999999977
Q ss_pred chHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 420 EIEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 420 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
+.++.++.+|++++|++|+.+.+ +|++++.
T Consensus 414 e~i~~~~~ai~~~~t~~~l~~~~-~~hPt~~ 443 (450)
T PRK06116 414 EMIQGFAVAIKMGATKADFDNTV-AIHPTAA 443 (450)
T ss_pred HHHHHHHHHHHCCCCHHHHhccc-ccCCChH
Confidence 35789999999999999997764 3444443
No 7
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.2e-51 Score=411.42 Aligned_cols=393 Identities=21% Similarity=0.260 Sum_probs=298.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc-cccccccc-ccc-cchhhhHHHHHhc-CcEEE-cceEEE
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT-KTVPVTKL-LSD-ITVEETDANKFEG-LCTVI-VDTVAA 78 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~-~~~~~~~~-~~~-~~~~~~~~~~~~~-~i~~~-~~~v~~ 78 (454)
+|||||||+||+++|..|++++++.+|+|||+++.+.+.. ..+.+... ... .+......+.+.+ +++++ ..+|+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~ 81 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVK 81 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEE
Confidence 7999999999999999999987778999999998765321 11111111 111 1122223344555 99986 569999
Q ss_pred EeCcccEEEecc---CcEEE--ecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhh--cCCeEEEEcCchhH
Q psy1545 79 IDPRVNCVITEK---QNRIK--YKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGIA 147 (454)
Q Consensus 79 i~~~~~~v~~~~---g~~i~--~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~--~~~~vvVvG~G~~g 147 (454)
++++.+.|.+.+ +..+. ||+||||||++|+.|+++ ++++++.+..+..++++.+. .+++++|+|+|++|
T Consensus 82 id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g 161 (444)
T PRK09564 82 VDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIG 161 (444)
T ss_pred EECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHH
Confidence 999888887754 55666 999999999999888876 45777777777777776654 37899999999999
Q ss_pred HHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccC
Q psy1545 148 TELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225 (454)
Q Consensus 148 ~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (454)
+|+|..+. |.+|+++++.+++++..+++++.+.+.+.+.+
T Consensus 162 ~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~-------------------------------------- 203 (444)
T PRK09564 162 LEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRE-------------------------------------- 203 (444)
T ss_pred HHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHH--------------------------------------
Confidence 99999886 99999999999888755678777777777754
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccC
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSIS 305 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~ 305 (454)
.||++++++.+.++..++. ...+.++ +.++++|.+++|+|++|+.+ +++..|++++++|+|.||+++||+.|
T Consensus 204 ---~gI~v~~~~~v~~i~~~~~---~~~v~~~-~~~i~~d~vi~a~G~~p~~~-~l~~~gl~~~~~g~i~vd~~~~t~~~ 275 (444)
T PRK09564 204 ---NGVELHLNEFVKSLIGEDK---VEGVVTD-KGEYEADVVIVATGVKPNTE-FLEDTGLKTLKNGAIIVDEYGETSIE 275 (444)
T ss_pred ---CCCEEEcCCEEEEEecCCc---EEEEEeC-CCEEEcCEEEECcCCCcCHH-HHHhcCccccCCCCEEECCCcccCCC
Confidence 8999999999999975432 3334444 45799999999999999998 88888888888899999999999999
Q ss_pred ceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCC
Q psy1545 306 NVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLE 385 (454)
Q Consensus 306 ~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~ 385 (454)
||||+|||+..+....+.+..+++++.|..||+++|+||++... .++....+....+++++++++|+++.++..
T Consensus 276 ~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~------~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~ 349 (444)
T PRK09564 276 NIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHV------SFKGTLGSACIKVLDLEAARTGLTEEEAKK 349 (444)
T ss_pred CEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCC------CCCCcccceEEEECCEEEEEecCCHHHHHH
Confidence 99999999986443333334467899999999999999997421 122222222345678899999999887653
Q ss_pred CCce--EEE-e--------ecCCccEEEEEE--ECCeEEEEEEEcCC---chHHHHHHHHhcCCCcchhhhh--ccCCCC
Q psy1545 386 NDYE--ILL-R--------VTRGEEYIKLVM--KDGRMQGAVLIGET---EIEEMCENLILNQLDLTDIADD--LLNPNI 447 (454)
Q Consensus 386 ~~~~--~~~-~--------~~~~~~~~k~~~--~~~~i~G~~~~g~~---~~~~~~~~~i~~~~~~~~~~~~--~~~~~~ 447 (454)
.+++ ... . .....+|+|+++ ++++|+|+|++|+. ..++.+..+|++++|++++.+. .++|++
T Consensus 350 ~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~ 429 (444)
T PRK09564 350 LGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPF 429 (444)
T ss_pred CCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCC
Confidence 3322 111 1 112357999999 58999999999986 3578999999999999998544 456776
Q ss_pred C
Q psy1545 448 D 448 (454)
Q Consensus 448 ~ 448 (454)
+
T Consensus 430 ~ 430 (444)
T PRK09564 430 A 430 (444)
T ss_pred C
Confidence 5
No 8
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-51 Score=412.51 Aligned_cols=380 Identities=17% Similarity=0.202 Sum_probs=284.1
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC--ccccccccccccccc------cccchh------h-------
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG--IVKAVTKTVPVTKLL------SDITVE------E------- 59 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~--~~~~~~~~~~~~~~~------~~~~~~------~------- 59 (454)
.+|||+|||||+||++||..|++. +.+|+|||+++ ..+.|.+..+.+... ...++. .
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~--g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA--GWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLR 79 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC--CCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 158999999999999999999998 89999999975 344454444332211 011111 0
Q ss_pred -hHHHHHhc--CcEEEcceEEEEeCcccEEEeccCc-EEEecEEEEecCCCCCCCCCCC--ceeeeeccchHHHHHHHhh
Q psy1545 60 -TDANKFEG--LCTVIVDTVAAIDPRVNCVITEKQN-RIKYKTLCICTGASPRKIWYSP--HVITIRDTDSVAVLQEKLK 133 (454)
Q Consensus 60 -~~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lviAtG~~p~~~~~~~--~~~~~~~~~~~~~l~~~~~ 133 (454)
.....+.+ +++++.+++.+++++...|.+.++. ++.||+||||||++|+.|++++ ....+.+..++..+. .
T Consensus 80 ~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~---~ 156 (441)
T PRK08010 80 NKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLK---E 156 (441)
T ss_pred HhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhccc---c
Confidence 01112222 8999999999999887777776664 6999999999999999988872 212233444444332 2
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
.+++++|||+|++|+|+|..+. |.+|+++++++++++. +++++...+.+.+.+
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~------------------------ 211 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRD------------------------ 211 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHh------------------------
Confidence 4889999999999999999986 9999999999998875 577777777666654
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCccccc--CCCCceec
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV--HGTPFELA 289 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~--~~~~l~~~ 289 (454)
.||++++++.+.+++.+++ .+.+..+++ ++++|.|++|+|++|+.+ ++ ...+++++
T Consensus 212 -----------------~gV~v~~~~~v~~i~~~~~---~v~v~~~~g-~i~~D~vl~a~G~~pn~~-~l~~~~~gl~~~ 269 (441)
T PRK08010 212 -----------------QGVDIILNAHVERISHHEN---QVQVHSEHA-QLAVDALLIASGRQPATA-SLHPENAGIAVN 269 (441)
T ss_pred -----------------CCCEEEeCCEEEEEEEcCC---EEEEEEcCC-eEEeCEEEEeecCCcCCC-CcCchhcCcEEC
Confidence 8999999999999987542 345555555 589999999999999997 53 45678888
Q ss_pred CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC-Ccceeccceeeeeeeeee
Q psy1545 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN-EPVIQDFSFEMFTHMTKF 368 (454)
Q Consensus 290 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 368 (454)
++|+|.||+++||+.|||||+|||++.+ ++.+.|..||++++.||++.... .......|..+|+
T Consensus 270 ~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~----- 334 (441)
T PRK08010 270 ERGAIVVDKYLHTTADNIWAMGDVTGGL----------QFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFM----- 334 (441)
T ss_pred CCCcEEECCCcccCCCCEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEEC-----
Confidence 8899999999999999999999999753 67889999999999999874211 1112234444444
Q ss_pred cCeEEEEeecccCCcCCCCc--eEEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCCc--hHHHHHHHHhcC
Q psy1545 369 FGYKVILLGLFNGQTLENDY--EILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGETE--IEEMCENLILNQ 432 (454)
Q Consensus 369 ~~~~~~~vG~~~~~~~~~~~--~~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~~--~~~~~~~~i~~~ 432 (454)
+++++++|+++.++...++ .+... .....+|+|+++ ++++|+|+|++|+.. .++.++.+|+++
T Consensus 335 -~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~ 413 (441)
T PRK08010 335 -TPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAG 413 (441)
T ss_pred -CCCceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCC
Confidence 5599999999987754332 22110 113467999999 489999999999874 578999999999
Q ss_pred CCcchhhhhc-cCCCCC
Q psy1545 433 LDLTDIADDL-LNPNID 448 (454)
Q Consensus 433 ~~~~~~~~~~-~~~~~~ 448 (454)
+|++++.+.+ .||+++
T Consensus 414 ~t~~~l~~~~~~hPt~~ 430 (441)
T PRK08010 414 LPYSILRDQIFTHPSMS 430 (441)
T ss_pred CCHHHHhhccccCCchH
Confidence 9999997544 466543
No 9
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=4e-51 Score=408.51 Aligned_cols=375 Identities=20% Similarity=0.290 Sum_probs=287.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc---------------------c--ccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL---------------------S--DITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~---------------------~--~~~~~ 58 (454)
+||++|||||++|.+||.. .. |.+|+|||++...+.|.++.+.+... . ..++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~--G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA--DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC--CCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence 4899999999999999865 34 89999999998888888875433210 0 11111
Q ss_pred ----------hhH----HHH--Hhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCCC-ceeeee
Q psy1545 59 ----------ETD----ANK--FEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSP-HVITIR 120 (454)
Q Consensus 59 ----------~~~----~~~--~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-~~~~~~ 120 (454)
.+. ... +.. +++++.+++++++ .++|.+.+|+.++||+||||||++|+.|+++. ....++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~ 154 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--PKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYH 154 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--CCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEE
Confidence 011 111 233 8999999999885 45677777778999999999999999998872 223456
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.+++..+.. .+++++|||+|++|+|+|..++ |.+|+++++++++++. +++++...+.+.+ +
T Consensus 155 ~~~~~~~l~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~l~-~----------- 218 (451)
T PRK07846 155 TSDTIMRLPE---LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDISERFTELA-S----------- 218 (451)
T ss_pred chHHHhhhhh---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHHHHHHH-h-----------
Confidence 7777766654 3899999999999999999987 9999999999998864 6777666554432 1
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.||++++++.+++++..++ .+.+.+.+|+++++|.|++|+|++|+.+
T Consensus 219 ------------------------------~~v~i~~~~~v~~i~~~~~---~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 219 ------------------------------KRWDVRLGRNVVGVSQDGS---GVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred ------------------------------cCeEEEeCCEEEEEEEcCC---EEEEEECCCcEeecCEEEEEECCccCcc
Confidence 5799999999999986542 4567778888999999999999999998
Q ss_pred ccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC-Cccee
Q psy1545 279 IQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN-EPVIQ 355 (454)
Q Consensus 279 ~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~-~~~~~ 355 (454)
++ +..+++++++|+|.||+++||++|||||+|||+..+ ++.+.|.+||+++|+||++.... ...+.
T Consensus 266 -~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~ 334 (451)
T PRK07846 266 -LLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPY----------QLKHVANHEARVVQHNLLHPDDLIASDHR 334 (451)
T ss_pred -ccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCc----------cChhHHHHHHHHHHHHHcCCCCccccCCC
Confidence 65 456788888999999999999999999999999743 67889999999999999975211 11223
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCCc-
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGETE- 420 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~~- 420 (454)
..|..+|+.+ +++++|+++.+++..++++... .....+|+|+++ ++++|+|+|++|++.
T Consensus 335 ~~p~~if~~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~ 408 (451)
T PRK07846 335 FVPAAVFTHP------QIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQAS 408 (451)
T ss_pred CCCeEEECCC------CcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHH
Confidence 3555555544 8999999998775433321110 123468999999 479999999999873
Q ss_pred -hHHHHHHHHhcCCCcchhhhhc--cCCCCC
Q psy1545 421 -IEEMCENLILNQLDLTDIADDL--LNPNID 448 (454)
Q Consensus 421 -~~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 448 (454)
.++.++.+|++++|++||.+.. .||+++
T Consensus 409 e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~ 439 (451)
T PRK07846 409 TLIQPLIQAMSFGLDAREMARGQYWIHPALP 439 (451)
T ss_pred HHHHHHHHHHHcCCCHHHHhhCCCccCCcHH
Confidence 5789999999999999998754 576654
No 10
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.3e-51 Score=411.66 Aligned_cols=378 Identities=20% Similarity=0.241 Sum_probs=284.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-ccccccccccccccc-----------------------cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVPVTKLL-----------------------SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~~~~~~~~~~~~~-----------------------~~~~~ 57 (454)
+||++||||||||++||..|+++ |.+|+|||+.+ ..+.|.++.+.+... ...++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADL--GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDI 81 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence 59999999999999999999998 99999999874 555566554332210 00111
Q ss_pred hh------hH--------HHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCC-CCCceeee
Q psy1545 58 EE------TD--------ANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIW-YSPHVITI 119 (454)
Q Consensus 58 ~~------~~--------~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~-~~~~~~~~ 119 (454)
.. .. ...+.+ +++++.+++.+++++...|...+| .+++||+||||||++|+.+| ++.....+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v 161 (471)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRI 161 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcE
Confidence 10 00 111233 899999999998876656665555 47999999999999997544 33221224
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
.+.+++..+.+ .+++++|||+|++|+|+|..+. |.+||++++.+++++. +|+++...+.+.+.+
T Consensus 162 ~~~~~~~~~~~---~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~---------- 227 (471)
T PRK06467 162 WDSTDALELKE---VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKK---------- 227 (471)
T ss_pred EChHHhhcccc---CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhh----------
Confidence 45566665543 3799999999999999999986 9999999999999985 788888888777754
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC----cEEecCEEEEeecc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGV 273 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g----~~~~~D~vi~a~G~ 273 (454)
. |++++++.+++++..++ .+.+.++++ +++++|.|++|+|+
T Consensus 228 -------------------------------~-v~i~~~~~v~~i~~~~~---~~~v~~~~~~~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 228 -------------------------------Q-FNIMLETKVTAVEAKED---GIYVTMEGKKAPAEPQRYDAVLVAVGR 272 (471)
T ss_pred -------------------------------c-eEEEcCCEEEEEEEcCC---EEEEEEEeCCCcceEEEeCEEEEeecc
Confidence 6 99999999999986543 345555442 46999999999999
Q ss_pred CcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 274 VPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 274 ~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
+|+.+ ++ ...+++++++|+|.||+++||+.|+|||+|||++.+ ++++.|..||+.||.||++... +
T Consensus 273 ~pn~~-~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~-~ 340 (471)
T PRK06467 273 VPNGK-LLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKH-Y 340 (471)
T ss_pred cccCC-ccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCC-C
Confidence 99997 43 456788888999999999999999999999998643 5788999999999999997432 1
Q ss_pred cceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE-e---------ecCCccEEEEEE--ECCeEEEEEEEc
Q psy1545 352 PVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL-R---------VTRGEEYIKLVM--KDGRMQGAVLIG 417 (454)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~-~---------~~~~~~~~k~~~--~~~~i~G~~~~g 417 (454)
..+...|..+| ++++++++|+++.++...+++ ... . .....+|+|+++ ++++|+|+|++|
T Consensus 341 ~~~~~~p~~~~------~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg 414 (471)
T PRK06467 341 FDPKVIPSIAY------TEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVG 414 (471)
T ss_pred CCCCCCCeEEE------CCCceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEEC
Confidence 12223444444 455999999999877543332 111 0 123468999999 479999999999
Q ss_pred CCc--hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 418 ETE--IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 418 ~~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
++. .++.++.+|++++|++|+.+.+ .||+++
T Consensus 415 ~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~ 448 (471)
T PRK06467 415 TNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLH 448 (471)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChH
Confidence 984 5788999999999999998774 366554
No 11
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=4.9e-51 Score=411.58 Aligned_cols=378 Identities=20% Similarity=0.297 Sum_probs=289.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-ccccccccccccccc-----------------------cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVPVTKLL-----------------------SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~~~~~~~~~~~~~-----------------------~~~~~ 57 (454)
+|||+|||||+||++||..|++. |.+|+|||+.+ ..+.|.+..+.+... ...++
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~--G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL--GKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITF 82 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCH
Confidence 58999999999999999999998 89999999964 444444433221100 00011
Q ss_pred h---h-----------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCC-Cceeee
Q psy1545 58 E---E-----------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYS-PHVITI 119 (454)
Q Consensus 58 ~---~-----------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~-~~~~~~ 119 (454)
. . .....+.+ +++++.+++.+++.....|...+|+ .++||+||||||++|+.|+++ .....+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~v 162 (461)
T PRK05249 83 ADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRI 162 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCeE
Confidence 0 0 01112334 8999999999998877677666664 799999999999999988765 122234
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
.+.+++..+.. .+++++|||+|++|+|+|..++ |.+|+++++++++++. +|+++...+.+.+.+
T Consensus 163 ~~~~~~~~~~~---~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~---------- 228 (461)
T PRK05249 163 YDSDSILSLDH---LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRD---------- 228 (461)
T ss_pred EcHHHhhchhh---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHH----------
Confidence 45555554443 4899999999999999999987 9999999999999884 788888888777754
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.||++++++.+++++..++ .+.+.+++|+++++|.|++|+|++|+.
T Consensus 229 -------------------------------~gI~v~~~~~v~~i~~~~~---~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 229 -------------------------------SGVTIRHNEEVEKVEGGDD---GVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred -------------------------------cCCEEEECCEEEEEEEeCC---eEEEEECCCCEEEeCEEEEeecCCccc
Confidence 8999999999999986542 355677788889999999999999999
Q ss_pred ccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCccee
Q psy1545 278 NIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355 (454)
Q Consensus 278 ~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 355 (454)
+ + ++..+++++++|+|.||+++||+.|||||+|||++.+ ++++.|..||++||.||++... ...+.
T Consensus 275 ~-~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-~~~~~ 342 (461)
T PRK05249 275 D-GLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEAT-AHLIE 342 (461)
T ss_pred c-CCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCc-ccccC
Confidence 7 4 4566788888899999999999999999999998643 5788999999999999996432 22233
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEE----------eecCCccEEEEEE--ECCeEEEEEEEcCC--
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILL----------RVTRGEEYIKLVM--KDGRMQGAVLIGET-- 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~----------~~~~~~~~~k~~~--~~~~i~G~~~~g~~-- 419 (454)
.+|..+|+.+ +++++|+++.++...+ +.+.. ......+|+|+++ ++++|+|+|++|+.
T Consensus 343 ~~p~~i~~~p------~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~ 416 (461)
T PRK05249 343 DIPTGIYTIP------EISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERAT 416 (461)
T ss_pred CCCeEEECCC------cceEecCCHHHHHHcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHH
Confidence 4666777765 8999999987765332 22111 0123468999999 47999999999987
Q ss_pred chHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 420 EIEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 420 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
+.++.+..+|++++|++|+.+..+ ||++
T Consensus 417 e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~ 445 (461)
T PRK05249 417 EIIHIGQAIMEQKGTIEYFVNTTFNYPTM 445 (461)
T ss_pred HHHHHHHHHHHCCCCHHHHhcCccCCCCH
Confidence 357889999999999999966653 6654
No 12
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=4.9e-51 Score=411.08 Aligned_cols=380 Identities=17% Similarity=0.243 Sum_probs=283.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-------------------c-----cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-------------------L-----SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-------------------~-----~~~~~ 57 (454)
+|||+||||||||++||..|+++ |++|+|||+....+.|.++.+.+.. + ...++
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGL--GMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 58999999999999999999998 9999999998877777766543221 0 01111
Q ss_pred hh--------------hHHHHHhc--CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC-Cceeeee
Q psy1545 58 EE--------------TDANKFEG--LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHVITIR 120 (454)
Q Consensus 58 ~~--------------~~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~ 120 (454)
.. .....+.+ +++++.++..+++. ++|.+ +++++.||+||||||++|+.|+++ .....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~--~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~ 159 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESP--NTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYL 159 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccC--CEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceE
Confidence 10 11122333 78988888777664 45665 566899999999999999999887 2222344
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.+++..+.. .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~~~---~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~----------- 224 (463)
T PRK06370 160 TNETIFSLDE---LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILER----------- 224 (463)
T ss_pred cchHhhCccc---cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHh-----------
Confidence 5555544332 3899999999999999999986 9999999999998875 577777777666644
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-CcEEecCEEEEeeccCcCc
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-GHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g~~~~~D~vi~a~G~~p~~ 277 (454)
.||++++++.+.+++..++ +..+.+...+ +.++++|.|++|+|++|+.
T Consensus 225 ------------------------------~GV~i~~~~~V~~i~~~~~-~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 225 ------------------------------EGIDVRLNAECIRVERDGD-GIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred ------------------------------CCCEEEeCCEEEEEEEcCC-EEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 8999999999999987542 1112233333 4679999999999999998
Q ss_pred c-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceec
Q psy1545 278 N-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQD 356 (454)
Q Consensus 278 ~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 356 (454)
+ ..++..+++++++|+|.||+++||+.|||||+|||+..+ ++.+.|..||++||+||++..........
T Consensus 274 ~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~ 343 (463)
T PRK06370 274 DDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRRKVSDRI 343 (463)
T ss_pred CCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCCccccc
Confidence 7 224566888888999999999999999999999998743 57789999999999999975322222223
Q ss_pred cceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCC--c
Q psy1545 357 FSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGET--E 420 (454)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~--~ 420 (454)
+|+.+|+ +++++++|+++.++...+++ .... ....++|+|+++ ++++|+|+|++|+. +
T Consensus 344 ~p~~~~~------~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e 417 (463)
T PRK06370 344 VPYATYT------DPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDE 417 (463)
T ss_pred CCeEEEc------CCCcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHH
Confidence 4444444 44899999998876543332 2110 123468999999 48999999999988 3
Q ss_pred hHHHHHHHHhcCCCcchhhhhcc-CCCCC
Q psy1545 421 IEEMCENLILNQLDLTDIADDLL-NPNID 448 (454)
Q Consensus 421 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 448 (454)
.++.+..+|++++|++||.+..+ ||+++
T Consensus 418 ~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 446 (463)
T PRK06370 418 MIHEILDAMYAGAPYTTLSRAIHIHPTVS 446 (463)
T ss_pred HHHHHHHHHHCCCCHHHHhcCcccCCChH
Confidence 57899999999999999977663 66543
No 13
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.6e-50 Score=397.83 Aligned_cols=381 Identities=19% Similarity=0.293 Sum_probs=299.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-cc--c-chhhhHHHHHhc-CcEEEcc-
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-SD--I-TVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~-~i~~~~~- 74 (454)
-+.+|||||||+||++||..|++.++..+|+|+++++..++ .++.++..+ .. . .......+++.. +++++.+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y--~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~ 79 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPY--ERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGV 79 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCC--CCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCC
Confidence 04689999999999999999999977779999999987643 333333211 10 0 011112344555 9999876
Q ss_pred eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHH
Q psy1545 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL 150 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~ 150 (454)
.|..++++++.|.+.+|+.+.||+||||||++|+.++++ ++++.+++.+++.++.+.+..+++++|||+|++|+|+
T Consensus 80 ~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~ 159 (396)
T PRK09754 80 TIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLEL 159 (396)
T ss_pred EEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHH
Confidence 799999999999988888999999999999999877764 5678888888998888887789999999999999999
Q ss_pred HHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 151 VHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 151 a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
|..|. |.+||++++.++++++.+++.....+.+.+.+
T Consensus 160 A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~----------------------------------------- 198 (396)
T PRK09754 160 AASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQ----------------------------------------- 198 (396)
T ss_pred HHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHH-----------------------------------------
Confidence 99986 99999999999988765676666666666644
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCcee
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVY 308 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iy 308 (454)
.||++++++.+++++.++ .+.+.+.+|+++++|.|++++|.+|+.. +++..++.. +++|.||+++||+.||||
T Consensus 199 ~GV~i~~~~~V~~i~~~~----~~~v~l~~g~~i~aD~Vv~a~G~~pn~~-l~~~~gl~~--~~gi~vd~~~~ts~~~Iy 271 (396)
T PRK09754 199 AGVRILLNNAIEHVVDGE----KVELTLQSGETLQADVVIYGIGISANDQ-LAREANLDT--ANGIVIDEACRTCDPAIF 271 (396)
T ss_pred CCCEEEeCCeeEEEEcCC----EEEEEECCCCEEECCEEEECCCCChhhH-HHHhcCCCc--CCCEEECCCCccCCCCEE
Confidence 899999999999998632 3567888999999999999999999998 777777765 467999999999999999
Q ss_pred ecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc
Q psy1545 309 AAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY 388 (454)
Q Consensus 309 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 388 (454)
|+|||+..+.+ .+.....++|+.|..||++||+||++.... ++...+ .|+++||.++.++|.....
T Consensus 272 A~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~------~~~~p~-~~~~~~~~~~~~~G~~~~~------ 337 (396)
T PRK09754 272 AGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGLPLP------LLPPPW-FWSDQYSDNLQFIGDMRGD------ 337 (396)
T ss_pred EccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCCCCC------CCCCCc-eEEEeCCccEEEeeCCCCC------
Confidence 99999976544 343445678999999999999999975321 222222 3578999999999985431
Q ss_pred eEEEeecC-CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCC
Q psy1545 389 EILLRVTR-GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNI 447 (454)
Q Consensus 389 ~~~~~~~~-~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 447 (454)
+.+.+.++ ...|+.+++++|+|+|+.++|.......+..+|.++..++. +.|.+|++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 395 (396)
T PRK09754 338 DWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSGKTFDA--KLLIDENI 395 (396)
T ss_pred EEEEecCCCCceEEEEEeeCCEEEEEEEECCHHHHHHHHHHHHCCCCCCH--HHhcCccc
Confidence 22333332 33466666689999999999999889999999999999876 56777754
No 14
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.4e-50 Score=409.60 Aligned_cols=390 Identities=18% Similarity=0.282 Sum_probs=288.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c---ccchh
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S---DITVE 58 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~---~~~~~ 58 (454)
|+||++|||||+||++||..+++. |.+|+|||++...+.|.++.+.+... . ..++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~--G~~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN--KAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc--CCeEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 468999999999999999999998 89999999988777777765443211 0 01111
Q ss_pred ------h--------hHHHHHhc-CcEEEcceEEEEeCcccEE--------------------------EeccCcEEEec
Q psy1545 59 ------E--------TDANKFEG-LCTVIVDTVAAIDPRVNCV--------------------------ITEKQNRIKYK 97 (454)
Q Consensus 59 ------~--------~~~~~~~~-~i~~~~~~v~~i~~~~~~v--------------------------~~~~g~~i~~d 97 (454)
. .....+.+ +++++.+++.+.++++..| .+.+|++++||
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad 204 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence 0 01112233 9999999998888665332 12356789999
Q ss_pred EEEEecCCCCCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCC
Q psy1545 98 TLCICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDP 175 (454)
Q Consensus 98 ~lviAtG~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~ 175 (454)
+||||||++|+.|++++.-+ ..+.+++..+. .+++++|||+|++|+|+|..+. |++||++++++++++. +|+
T Consensus 205 ~lVIATGS~P~~P~IpG~~~-v~ts~~~~~l~----~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~ 278 (561)
T PTZ00058 205 NILIAVGNKPIFPDVKGKEF-TISSDDFFKIK----EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDE 278 (561)
T ss_pred EEEEecCCCCCCCCCCCcee-EEEHHHHhhcc----CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCH
Confidence 99999999999998873212 23445554432 3899999999999999999986 9999999999998874 788
Q ss_pred cchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEE
Q psy1545 176 GAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVK 255 (454)
Q Consensus 176 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~ 255 (454)
++.+.+.+.+++ .||++++++.+.+++..++ ..+.+.
T Consensus 279 ~i~~~l~~~L~~-----------------------------------------~GV~i~~~~~V~~I~~~~~--~~v~v~ 315 (561)
T PTZ00058 279 TIINELENDMKK-----------------------------------------NNINIITHANVEEIEKVKE--KNLTIY 315 (561)
T ss_pred HHHHHHHHHHHH-----------------------------------------CCCEEEeCCEEEEEEecCC--CcEEEE
Confidence 888888777755 8999999999999986542 124444
Q ss_pred ecCC-cEEecCEEEEeeccCcCcccccCCCCce-ecCCCceEeccccccccCceeecCcccccCCc--------------
Q psy1545 256 LTNG-HTHACDIVVSAIGVVPNSNIQVHGTPFE-LAPDCGIGVNELMQTSISNVYAAGDVCTPSWD-------------- 319 (454)
Q Consensus 256 ~~~g-~~~~~D~vi~a~G~~p~~~~~~~~~~l~-~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~-------------- 319 (454)
+.++ +++++|.|++|+|++|+.+ .+...++. .+++|+|.||+++||+.|||||+|||++....
T Consensus 316 ~~~~~~~i~aD~VlvA~Gr~Pn~~-~L~l~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~ 394 (561)
T PTZ00058 316 LSDGRKYEHFDYVIYCVGRSPNTE-DLNLKALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNE 394 (561)
T ss_pred ECCCCEEEECCEEEECcCCCCCcc-ccCccccceecCCCeEEECcCCccCCCCEEEeEeccCcccccccccccccccccc
Confidence 5444 5799999999999999998 76554432 24679999999999999999999999983221
Q ss_pred ---------cccchh-hccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC---
Q psy1545 320 ---------LAKQWF-QMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN--- 386 (454)
Q Consensus 320 ---------~~~~~~-~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--- 386 (454)
.++... .+++++.|..||++||+||++.......+..+|..+|+.| +++.+|+++.++...
T Consensus 395 ~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~~~ip~~vft~p------eiA~vGlte~eA~~~~g~ 468 (561)
T PTZ00058 395 EPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVIFSHP------PIGTIGLSEQEAIDIYGK 468 (561)
T ss_pred ccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCCCCCCeEEeCCc------hheeeeCCHHHHHHhcCC
Confidence 111222 3678999999999999999975322222233555566554 899999999877532
Q ss_pred -CceEEE-ee-------------cCCccEEEEEE--ECCeEEEEEEEcCCc--hHHHHHHHHhcCCCcchhhhhcc-CCC
Q psy1545 387 -DYEILL-RV-------------TRGEEYIKLVM--KDGRMQGAVLIGETE--IEEMCENLILNQLDLTDIADDLL-NPN 446 (454)
Q Consensus 387 -~~~~~~-~~-------------~~~~~~~k~~~--~~~~i~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~-~~~ 446 (454)
.+.... .. ....+|+|+++ ++++|+|+|++|+.. .++.++.+|++++|++|+.+.++ ||+
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt 548 (561)
T PTZ00058 469 ENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPT 548 (561)
T ss_pred CcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCC
Confidence 122210 00 12458999999 489999999999773 46789999999999999977653 655
Q ss_pred CC
Q psy1545 447 ID 448 (454)
Q Consensus 447 ~~ 448 (454)
++
T Consensus 549 ~~ 550 (561)
T PTZ00058 549 AA 550 (561)
T ss_pred hH
Confidence 43
No 15
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=1.3e-50 Score=407.12 Aligned_cols=380 Identities=22% Similarity=0.305 Sum_probs=287.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c-------cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S-------DI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~-------~~ 55 (454)
+.|++|||||++|+.||..++++ +.+|+|||++...+.|.++.+.+... . ..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~--g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQL--GADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 14899999999999999999998 99999999988777666654432110 0 01
Q ss_pred chh--------------hhHHHHHhc-CcEEEcceEEE----EeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCC-
Q psy1545 56 TVE--------------ETDANKFEG-LCTVIVDTVAA----IDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYS- 113 (454)
Q Consensus 56 ~~~--------------~~~~~~~~~-~i~~~~~~v~~----i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~- 113 (454)
++. ....+.+.+ +++++.+++++ ++++...|.+.+|+ .+.||+||||||++|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 158 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAE 158 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCC
Confidence 110 011122334 89999999998 44555556555665 799999999999999877654
Q ss_pred CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCC
Q psy1545 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTA 191 (454)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~ 191 (454)
.....+.+..++..+.. .+++++|||+|.+|+|+|..|+ |.+||++++.+++++. +++++...+.+.+.+
T Consensus 159 ~~~~~v~~~~~~~~~~~---~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L~~---- 230 (466)
T PRK07845 159 PDGERILTWRQLYDLDE---LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVFAR---- 230 (466)
T ss_pred CCCceEEeehhhhcccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHHHH----
Confidence 22122334444444332 2789999999999999999986 9999999999999886 678777777777754
Q ss_pred ChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEee
Q psy1545 192 KPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~ 271 (454)
+||++++++.+.+++..++ .+.+.+.+|+++++|.|++++
T Consensus 231 -------------------------------------~gV~i~~~~~v~~v~~~~~---~~~v~~~~g~~l~~D~vl~a~ 270 (466)
T PRK07845 231 -------------------------------------RGMTVLKRSRAESVERTGD---GVVVTLTDGRTVEGSHALMAV 270 (466)
T ss_pred -------------------------------------CCcEEEcCCEEEEEEEeCC---EEEEEECCCcEEEecEEEEee
Confidence 8999999999999976542 356777788899999999999
Q ss_pred ccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 272 GVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 272 G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
|++|+.+ . ++..+++++++|+|.||+++||+.|||||+|||++. +++++.|..||++||.|+++...
T Consensus 271 G~~pn~~-~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~----------~~l~~~A~~~g~~aa~~i~g~~~ 339 (466)
T PRK07845 271 GSVPNTA-GLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGV----------LPLASVAAMQGRIAMYHALGEAV 339 (466)
T ss_pred cCCcCCC-CCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCC----------ccchhHHHHHHHHHHHHHcCCCC
Confidence 9999997 4 466788888889999999999999999999999874 36889999999999999997532
Q ss_pred CCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEE---e-------ecCCccEEEEEE--ECCeEEEEEE
Q psy1545 350 NEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILL---R-------VTRGEEYIKLVM--KDGRMQGAVL 415 (454)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~---~-------~~~~~~~~k~~~--~~~~i~G~~~ 415 (454)
....+..+|..+|+.+ +++++|+++.++...+ +.... . .....+|+|+++ ++++|+|+|+
T Consensus 340 ~~~~~~~~p~~vf~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~ 413 (466)
T PRK07845 340 SPLRLKTVASNVFTRP------EIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVV 413 (466)
T ss_pred CcCCCCCCCEEEeCCC------cceeecCCHHHHHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEE
Confidence 1112233555555544 8999999987665333 22211 1 112468999999 4899999999
Q ss_pred EcCCc--hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 416 IGETE--IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 416 ~g~~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
+|+.. .++.+..+|++++|++||.+.+ .||+++
T Consensus 414 ~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 449 (466)
T PRK07845 414 VAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLS 449 (466)
T ss_pred ECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHH
Confidence 99873 5789999999999999997755 366543
No 16
>PLN02546 glutathione reductase
Probab=100.00 E-value=5.8e-51 Score=412.64 Aligned_cols=376 Identities=21% Similarity=0.282 Sum_probs=285.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC----------CCccccccccccccccc-------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP----------SGIVKAVTKTVPVTKLL------------------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~----------~~~~~~~~~~~~~~~~~------------------- 52 (454)
+|||+|||||+||+.||..++++ |++|+|||+ +...+.|.++.+.+...
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNF--GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 48999999999999999999998 999999996 44566666665432211
Q ss_pred -----cccchh----------hhH----HHHHhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCC
Q psy1545 53 -----SDITVE----------ETD----ANKFEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY 112 (454)
Q Consensus 53 -----~~~~~~----------~~~----~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~ 112 (454)
...++. .+. ...+.+ +++++.+++++++++. |.+ +|+.+.||+||||||++|..|++
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~--V~v-~G~~~~~D~LVIATGs~p~~P~I 233 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHT--VDV-DGKLYTARNILIAVGGRPFIPDI 233 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCE--EEE-CCEEEECCEEEEeCCCCCCCCCC
Confidence 011111 011 112233 8999999999998864 555 67789999999999999999988
Q ss_pred CCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCC
Q psy1545 113 SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190 (454)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~ 190 (454)
++. ..+.+.+++..+.. .+++++|||+|++|+|+|..+. +.+|+++++.+++++. +++++...+.+.+.+
T Consensus 234 pG~-~~v~~~~~~l~~~~---~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~~~~l~~~L~~--- 305 (558)
T PLN02546 234 PGI-EHAIDSDAALDLPS---KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEVRDFVAEQMSL--- 305 (558)
T ss_pred CCh-hhccCHHHHHhccc---cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHHHHHHHHHHHH---
Confidence 721 11234444444332 4899999999999999999986 8999999999998874 788888888777755
Q ss_pred CChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEe
Q psy1545 191 AKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSA 270 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a 270 (454)
+||++++++.+.++...++ ..+.+.+.+++...+|.|+++
T Consensus 306 --------------------------------------~GV~i~~~~~v~~i~~~~~--g~v~v~~~~g~~~~~D~Viva 345 (558)
T PLN02546 306 --------------------------------------RGIEFHTEESPQAIIKSAD--GSLSLKTNKGTVEGFSHVMFA 345 (558)
T ss_pred --------------------------------------CCcEEEeCCEEEEEEEcCC--CEEEEEECCeEEEecCEEEEe
Confidence 8999999999999976432 234555555555568999999
Q ss_pred eccCcCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 271 IGVVPNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 271 ~G~~p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+|++|+.+ + ++..+++++++|+|.||+++||++|||||+|||+.. .++++.|..||+++|+||++..
T Consensus 346 ~G~~Pnt~-~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~----------~~l~~~A~~~g~~~a~~i~g~~ 414 (558)
T PLN02546 346 TGRKPNTK-NLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDR----------INLTPVALMEGGALAKTLFGNE 414 (558)
T ss_pred eccccCCC-cCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCC----------cccHHHHHHHHHHHHHHHcCCC
Confidence 99999998 5 466788888889999999999999999999999974 3578899999999999999753
Q ss_pred CCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC--CceEEEe----------ecCCccEEEEEE--ECCeEEEEE
Q psy1545 349 KNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN--DYEILLR----------VTRGEEYIKLVM--KDGRMQGAV 414 (454)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~~~~~~~----------~~~~~~~~k~~~--~~~~i~G~~ 414 (454)
.....+..+|..+|+.| +++.||+++.++... ++.+... ..+..+|+|+++ ++++|+|+|
T Consensus 415 ~~~~~~~~vp~~vft~P------eia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ 488 (558)
T PLN02546 415 PTKPDYRAVPSAVFSQP------PIGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVH 488 (558)
T ss_pred CCcCCCCCCCEEEeCCc------hHhhccCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEE
Confidence 22222334566666655 899999999876543 2322111 113468999999 589999999
Q ss_pred EEcCCc--hHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 415 LIGETE--IEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 415 ~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
++|+.. .++.+..+|++++|++|+.+.++ ||++
T Consensus 489 ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~ 524 (558)
T PLN02546 489 MCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTA 524 (558)
T ss_pred EECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCh
Confidence 999883 57899999999999999976543 5543
No 17
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-50 Score=407.13 Aligned_cols=378 Identities=22% Similarity=0.326 Sum_probs=286.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----------------------cccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----------------------SDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----------------------~~~~~~ 58 (454)
+||++||||||||++||..|+++ |.+|+|+|+++..+.|.+..+.+... ...++.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~--G~~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQL--GLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHC--CCcEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 58999999999999999999998 99999999988666666554332110 001111
Q ss_pred h--h------------HHHHHhc-CcEEEcceEEEEeCcccEEEecc-CcEEEecEEEEecCCCCCCCCCC-Cceeeeec
Q psy1545 59 E--T------------DANKFEG-LCTVIVDTVAAIDPRVNCVITEK-QNRIKYKTLCICTGASPRKIWYS-PHVITIRD 121 (454)
Q Consensus 59 ~--~------------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~-g~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~ 121 (454)
. + ....+.+ +++++.++++++++++..|...+ ++.+.||+||||||++|..|+.. .....+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~ 161 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence 0 0 1112333 99999999999988776665433 36899999999999999766533 12223446
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
.+++..+.. .+++++|||+|++|+|+|..|. |.+||++++.+++++. +++++.+.+.+.+.+
T Consensus 162 ~~~~~~~~~---~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~------------ 225 (462)
T PRK06416 162 SDEALNLDE---VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKK------------ 225 (462)
T ss_pred chHhhCccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHH------------
Confidence 666655443 3799999999999999999986 9999999999998885 677777777777754
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---cEEecCEEEEeeccCcC
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g---~~~~~D~vi~a~G~~p~ 276 (454)
.||++++++.+.+++.+++ .+.+.++++ +++++|.|++|+|++|+
T Consensus 226 -----------------------------~gV~i~~~~~V~~i~~~~~---~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 226 -----------------------------RGIKIKTGAKAKKVEQTDD---GVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred -----------------------------cCCEEEeCCEEEEEEEeCC---EEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 8999999999999987542 455666665 67999999999999999
Q ss_pred ccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcce
Q psy1545 277 SNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354 (454)
Q Consensus 277 ~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (454)
.+ ++ +..++.++ +|+|.||+++||+.|+|||+|||+.. +++++.|..||+.+|.||++...
T Consensus 274 ~~-~l~l~~~gl~~~-~g~i~vd~~~~t~~~~VyAiGD~~~~----------~~~~~~A~~~g~~aa~ni~~~~~----- 336 (462)
T PRK06416 274 TE-NLGLEELGVKTD-RGFIEVDEQLRTNVPNIYAIGDIVGG----------PMLAHKASAEGIIAAEAIAGNPH----- 336 (462)
T ss_pred CC-CCCchhcCCeec-CCEEeECCCCccCCCCEEEeeecCCC----------cchHHHHHHHHHHHHHHHcCCCC-----
Confidence 98 64 46678887 89999999999999999999999864 35788999999999999997421
Q ss_pred eccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCC-
Q psy1545 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGET- 419 (454)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~- 419 (454)
.+++. ..+...+++++++++|+++.++...+++ +... .....+|+|+++ ++++|+|+|++|+.
T Consensus 337 -~~~~~-~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a 414 (462)
T PRK06416 337 -PIDYR-GIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARA 414 (462)
T ss_pred -CCCCC-CCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCH
Confidence 11111 1223456677999999998876543332 2211 123468999999 58999999999987
Q ss_pred -chHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 420 -EIEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 420 -~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
+.++.++.+|++++|++||.+.. .||+++
T Consensus 415 ~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 445 (462)
T PRK06416 415 SELIQEAQLAINWEATPEDLALTIHPHPTLS 445 (462)
T ss_pred HHHHHHHHHHHHCCCCHHHHhhCccCCCCHH
Confidence 35789999999999999998875 366543
No 18
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.5e-50 Score=404.97 Aligned_cols=380 Identities=21% Similarity=0.248 Sum_probs=280.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc--c---------------------ccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL--S---------------------DITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~--~---------------------~~~~~ 58 (454)
+||++||||||||++||..|++. |.+|+|||++...+.|.+..+.+... . ..++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~--G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL--GLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence 58999999999999999999998 99999999987777776664433210 0 00000
Q ss_pred h-------------hHHHH-Hhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCCCCCceeeeec
Q psy1545 59 E-------------TDANK-FEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIWYSPHVITIRD 121 (454)
Q Consensus 59 ~-------------~~~~~-~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~~~~~~~~~~ 121 (454)
. ..... +.. +++.+.++.++++.....|...+| .+++||+||||||++|+.||..+....+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~ 161 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVT 161 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEc
Confidence 0 00011 122 778888888888776655655455 379999999999999987543211011223
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
.++..... ..+++++|||+|++|+|+|..++ |.+|+++++.+++++. +|+++...+.+.+.+
T Consensus 162 ~~~~~~~~---~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~------------ 225 (466)
T PRK07818 162 YEEQILSR---ELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKK------------ 225 (466)
T ss_pred hHHHhccc---cCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHH------------
Confidence 33322221 13799999999999999999987 9999999999999885 677777777777754
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCEEEEeeccCc
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDIVVSAIGVVP 275 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~vi~a~G~~p 275 (454)
.||++++++.|++++.+++ .+.+.+. +| +++++|.|++|+|++|
T Consensus 226 -----------------------------~gV~i~~~~~v~~i~~~~~---~~~v~~~~~~g~~~~i~~D~vi~a~G~~p 273 (466)
T PRK07818 226 -----------------------------LGVKILTGTKVESIDDNGS---KVTVTVSKKDGKAQELEADKVLQAIGFAP 273 (466)
T ss_pred -----------------------------CCCEEEECCEEEEEEEeCC---eEEEEEEecCCCeEEEEeCEEEECcCccc
Confidence 8999999999999986542 3444443 56 4799999999999999
Q ss_pred Ccccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc-
Q psy1545 276 NSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP- 352 (454)
Q Consensus 276 ~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~- 352 (454)
+.+ + ++..++.++++|+|.||+++||+.|+|||+|||+.. +++++.|..||++||.||++......
T Consensus 274 n~~-~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~----------~~l~~~A~~~g~~aa~~i~g~~~~~~~ 342 (466)
T PRK07818 274 RVE-GYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAK----------LQLAHVAEAQGVVAAETIAGAETLELG 342 (466)
T ss_pred CCC-CCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCC----------cccHhHHHHHHHHHHHHHcCCCCCccC
Confidence 997 5 466788888889999999999999999999999863 36889999999999999997532111
Q ss_pred ceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe----------ecCCccEEEEEE--ECCeEEEEEEEcC
Q psy1545 353 VIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGE 418 (454)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~ 418 (454)
.+...|..+|+ +++++++|+++.++...+++ .... .....+|+|+++ ++++|+|+|++|+
T Consensus 343 ~~~~~p~~~~~------~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~ 416 (466)
T PRK07818 343 DYRMMPRATFC------QPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTGFVKLVADAKYGELLGGHLIGP 416 (466)
T ss_pred ccCCCCeEEEC------CCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCeEEEEEEECCCCeEEEEEEECC
Confidence 12223444444 45999999999876543332 1110 123468999999 4899999999998
Q ss_pred Cc--hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 419 TE--IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 419 ~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
.. .++.++.+|++++|++||.+.+ .||+++
T Consensus 417 ~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 449 (466)
T PRK07818 417 DVSELLPELTLAQKWDLTAEELARNVHTHPTLS 449 (466)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHhcCccCCCchH
Confidence 73 5788999999999999998765 365543
No 19
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=3.1e-50 Score=403.27 Aligned_cols=381 Identities=19% Similarity=0.245 Sum_probs=286.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC---------Cccccccccccccccc--------------c-----
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS---------GIVKAVTKTVPVTKLL--------------S----- 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~---------~~~~~~~~~~~~~~~~--------------~----- 53 (454)
+||++|||||++|+.||..++++ .|.+|+|||+. ...+.|.++.+.+... .
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~-~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATL-YKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHh-cCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 58999999999999999999995 17899999973 4566677765433211 0
Q ss_pred ------ccchhh--------------hHHHHHhc--CcEEEcceEEEEeCcccEEEecc------CcEEEecEEEEecCC
Q psy1545 54 ------DITVEE--------------TDANKFEG--LCTVIVDTVAAIDPRVNCVITEK------QNRIKYKTLCICTGA 105 (454)
Q Consensus 54 ------~~~~~~--------------~~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~------g~~i~~d~lviAtG~ 105 (454)
..++.. .....+.+ +++++.++..+++++...|.... .+.+.||+||||||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs 161 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS 161 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence 011110 01112333 79999999999987654443211 247999999999999
Q ss_pred CCCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhh
Q psy1545 106 SPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEF 180 (454)
Q Consensus 106 ~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~ 180 (454)
+|..|++++. ..+.+.+++..+.. .+++++|||+|++|+|+|..+. |.+||++++.+++++. +|+++.+.
T Consensus 162 ~p~~p~i~G~-~~~~~~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-~d~~~~~~ 236 (486)
T TIGR01423 162 WPQMLGIPGI-EHCISSNEAFYLDE---PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-FDSTLRKE 236 (486)
T ss_pred CCCCCCCCCh-hheechhhhhcccc---CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-cCHHHHHH
Confidence 9998888721 11235555554432 4899999999999999997653 8999999999999874 78988888
Q ss_pred hHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc
Q psy1545 181 FQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH 260 (454)
Q Consensus 181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~ 260 (454)
+.+.+++ +||++++++.+++++..++ ....+.+++|+
T Consensus 237 l~~~L~~-----------------------------------------~GI~i~~~~~v~~i~~~~~--~~~~v~~~~g~ 273 (486)
T TIGR01423 237 LTKQLRA-----------------------------------------NGINIMTNENPAKVTLNAD--GSKHVTFESGK 273 (486)
T ss_pred HHHHHHH-----------------------------------------cCCEEEcCCEEEEEEEcCC--ceEEEEEcCCC
Confidence 8888865 8999999999999986532 23556777888
Q ss_pred EEecCEEEEeeccCcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHH
Q psy1545 261 THACDIVVSAIGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGT 338 (454)
Q Consensus 261 ~~~~D~vi~a~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~ 338 (454)
++++|.|++|+|++|+.+ ++ +..+++++++|+|.||+++||++|||||+|||++.+ ++.+.|.+||+
T Consensus 274 ~i~~D~vl~a~G~~Pn~~-~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~ 342 (486)
T TIGR01423 274 TLDVDVVMMAIGRVPRTQ-TLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGA 342 (486)
T ss_pred EEEcCEEEEeeCCCcCcc-cCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHH
Confidence 899999999999999998 54 456788888999999999999999999999998743 67888999999
Q ss_pred HHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc--eEEE---e-------e-cCCccEEEEEE
Q psy1545 339 YAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY--EILL---R-------V-TRGEEYIKLVM 405 (454)
Q Consensus 339 ~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~--~~~~---~-------~-~~~~~~~k~~~ 405 (454)
+||+||++.......+...|..+|+.| ++++||+++.++..... .... . . ....+|+|+++
T Consensus 343 ~aa~ni~g~~~~~~~~~~vp~~vft~p------eia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~ 416 (486)
T TIGR01423 343 AFVDTVFGNKPRKTDHTRVASAVFSIP------PIGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVT 416 (486)
T ss_pred HHHHHHhCCCCcccCCCCCCEEEeCCC------ceEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEE
Confidence 999999974321112233666777765 89999999987653321 1110 0 0 01257999999
Q ss_pred --ECCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 406 --KDGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 406 --~~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
++++|||+|++|+. +.++.++.+|++++|++|+.+.+ .||+++
T Consensus 417 d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~s 464 (486)
T TIGR01423 417 NHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSA 464 (486)
T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcH
Confidence 48999999999987 35789999999999999997765 355554
No 20
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.3e-49 Score=398.01 Aligned_cols=375 Identities=20% Similarity=0.288 Sum_probs=284.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c----ccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S----DITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~----~~~~~ 58 (454)
+||++|||+|++|+.||.. .. |.+|+|||++...+.|.++.+.+... . ..++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~--g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA--DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC--CCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 5899999999999998654 34 89999999988888787775433211 0 01110
Q ss_pred -----------hhH----HHHH---hc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC-Cceee
Q psy1545 59 -----------ETD----ANKF---EG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-PHVIT 118 (454)
Q Consensus 59 -----------~~~----~~~~---~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~~~~~ 118 (454)
... .... ++ +++++.++..+.+. ++|.+.+|++++||+||||||++|+.|++. .....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~--~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~ 155 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGP--RTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVR 155 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecC--CEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCE
Confidence 000 1111 22 89999998888854 557776777899999999999999888754 22224
Q ss_pred eeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhh
Q psy1545 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196 (454)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~ 196 (454)
+.+.+++..+.+. +++++|||+|++|+|+|..|. |.+|+++++.+++++. +++++...+.+.+
T Consensus 156 ~~~~~~~~~l~~~---~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~----------- 220 (452)
T TIGR03452 156 YHTNEDIMRLPEL---PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA----------- 220 (452)
T ss_pred EEcHHHHHhhhhc---CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-----------
Confidence 5677787777653 899999999999999999986 9999999999988764 6777666554432
Q ss_pred hhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+.||++++++.+++++.+++ .+.+.+.+|+++++|.|++|+|++|+
T Consensus 221 -------------------------------~~gI~i~~~~~V~~i~~~~~---~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 221 -------------------------------KKKWDIRLGRNVTAVEQDGD---GVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred -------------------------------hcCCEEEeCCEEEEEEEcCC---eEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 15899999999999986542 35677778888999999999999999
Q ss_pred ccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC-CCcc
Q psy1545 277 SNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK-NEPV 353 (454)
Q Consensus 277 ~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~-~~~~ 353 (454)
.+ ++ +..|++++++|+|.||+++||++|+|||+|||+.. +++.+.|.+||+++|+||++... ....
T Consensus 267 ~~-~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~----------~~l~~~A~~~g~~~a~ni~~~~~~~~~~ 335 (452)
T TIGR03452 267 GD-LLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSP----------YQLKHVANAEARVVKHNLLHPNDLRKMP 335 (452)
T ss_pred CC-CcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCc----------ccChhHHHHHHHHHHHHhcCCCCcccCC
Confidence 98 64 45688888889999999999999999999999874 36788999999999999997532 1112
Q ss_pred eeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 354 IQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
+...|..+|+. ++++++|+++.++...+++.... .....+|+|+++ ++++|||+|++|+.
T Consensus 336 ~~~~p~~i~t~------p~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~ 409 (452)
T TIGR03452 336 HDFVPSAVFTH------PQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQ 409 (452)
T ss_pred CCCCCeEEECC------CCeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 23345555544 49999999998775433322110 123568999999 48999999999987
Q ss_pred c--hHHHHHHHHhcCCCcchhhhh-c-cCCCCC
Q psy1545 420 E--IEEMCENLILNQLDLTDIADD-L-LNPNID 448 (454)
Q Consensus 420 ~--~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~ 448 (454)
. .++.++.+|++++|++|+.+. + .||+++
T Consensus 410 a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~ 442 (452)
T TIGR03452 410 ASSLIQPLITAMAFGLDAREMARKQYWIHPALP 442 (452)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhhCCcccCCchH
Confidence 4 578889999999999999875 3 577654
No 21
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=7.8e-50 Score=402.61 Aligned_cols=379 Identities=19% Similarity=0.243 Sum_probs=282.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc----------------------cccchh--
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL----------------------SDITVE-- 58 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~----------------------~~~~~~-- 58 (454)
||++||||||||++||..++++ |.+|+|||+++..+.|.++.+.+... ...++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~--g~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL--GASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 6999999999999999999998 89999999988777776653322100 001111
Q ss_pred ----hh---------HHHHHhc-CcEEEcceEEEEeCcccEEEeccCc-EEEecEEEEecCCCCCCCCCC-Cceeeeecc
Q psy1545 59 ----ET---------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN-RIKYKTLCICTGASPRKIWYS-PHVITIRDT 122 (454)
Q Consensus 59 ----~~---------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~-~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~ 122 (454)
.. ....+.+ +++++.+++.+++. ++|.+.++. .+.||+||||||++|+.|+++ .....+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~--~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~ 156 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDP--KTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTS 156 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccC--CEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECc
Confidence 00 1122334 89999999888764 456665553 689999999999999999887 222234555
Q ss_pred chHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhc
Q psy1545 123 DSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200 (454)
Q Consensus 123 ~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 200 (454)
+++..+.+ .+++++|||+|.+|+|+|..|. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 157 ~~~~~~~~---~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~------------- 219 (463)
T TIGR02053 157 EEALALDR---IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAE------------- 219 (463)
T ss_pred hhhhCccc---CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHH-------------
Confidence 55544432 3799999999999999999986 9999999999998885 677777777777654
Q ss_pred ccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CCcEEecCEEEEeeccCcCc
Q psy1545 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g~~~~~D~vi~a~G~~p~~ 277 (454)
.||+++++++|++++.+++ ...+.+. +++++++|.|++|+|++|+.
T Consensus 220 ----------------------------~gV~i~~~~~V~~i~~~~~---~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 220 ----------------------------EGIEVVTSAQVKAVSVRGG---GKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred ----------------------------cCCEEEcCcEEEEEEEcCC---EEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 8999999999999987542 2344443 23679999999999999998
Q ss_pred ccc-cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceec
Q psy1545 278 NIQ-VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQD 356 (454)
Q Consensus 278 ~~~-~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~ 356 (454)
+.+ ++..+++++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||++||.||++....+..+..
T Consensus 269 ~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~ 338 (463)
T TIGR02053 269 DGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGL----------QLEYVAAKEGVVAAENALGGANAKLDLLV 338 (463)
T ss_pred CCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCCccCcCC
Confidence 722 5667788888999999999999999999999999743 57889999999999999974221111222
Q ss_pred cceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE---e-------ecCCccEEEEEE--ECCeEEEEEEEcCCc--
Q psy1545 357 FSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL---R-------VTRGEEYIKLVM--KDGRMQGAVLIGETE-- 420 (454)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~---~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~~-- 420 (454)
+|..+ +.+++++++|+++.++...+++ ... . .....+|+|+++ ++++|+|+|++|+..
T Consensus 339 ~p~~~------~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e 412 (463)
T TIGR02053 339 IPRVV------FTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAE 412 (463)
T ss_pred CCeEE------eccCceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHH
Confidence 34433 4455999999998776543332 111 0 123468999999 489999999999983
Q ss_pred hHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 421 IEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 421 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
.++.+..+|++++|++|+.+.. +|+.++.
T Consensus 413 ~i~~~~~ai~~~~t~~~l~~~~-~~~pt~~ 441 (463)
T TIGR02053 413 VINEAALAIRAGMTVDDLIDTL-HPFPTMA 441 (463)
T ss_pred HHHHHHHHHHCCCCHHHHhhCc-ccCCChH
Confidence 5789999999999999996654 3444443
No 22
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-49 Score=400.46 Aligned_cols=380 Identities=19% Similarity=0.198 Sum_probs=277.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC-CCccccccccccccccc------------------------ccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP-SGIVKAVTKTVPVTKLL------------------------SDI 55 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~-~~~~~~~~~~~~~~~~~------------------------~~~ 55 (454)
++|||+||||||||++||..+++. |++|+|||+ ....+.|.++.+.+... ...
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~--G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~ 79 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQL--GLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL 79 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence 158999999999999999999998 999999997 45555555553322110 001
Q ss_pred chhh-------------hHHH-HHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCC--Cce
Q psy1545 56 TVEE-------------TDAN-KFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYS--PHV 116 (454)
Q Consensus 56 ~~~~-------------~~~~-~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~--~~~ 116 (454)
++.. ...+ .+.+ +++++.+++.+.++++..|...+|+ +++||+||||||++|..++.. ++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~ 159 (466)
T PRK06115 80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQ 159 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCC
Confidence 1110 0011 1223 7999998887766655455555554 699999999999998643322 222
Q ss_pred eeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChh
Q psy1545 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPE 194 (454)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~ 194 (454)
. +.+.+++..+. ..+++++|||+|++|+|+|..+. |.+||++++.+++++. +++++...+.+.+.+
T Consensus 160 ~-~~~~~~~~~~~---~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~------- 227 (466)
T PRK06115 160 R-IIDSTGALSLP---EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTK------- 227 (466)
T ss_pred e-EECHHHHhCCc---cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHh-------
Confidence 2 23444444332 24899999999999999999886 9999999999999885 677777777777754
Q ss_pred hhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec---C--CcEEecCEEEE
Q psy1545 195 TIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---N--GHTHACDIVVS 269 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~--g~~~~~D~vi~ 269 (454)
.||++++++.+++++.+++ .+.+.+. + ++++++|.|++
T Consensus 228 ----------------------------------~gV~i~~~~~V~~i~~~~~---~v~v~~~~~~~g~~~~i~~D~vi~ 270 (466)
T PRK06115 228 ----------------------------------QGMKFKLGSKVTGATAGAD---GVSLTLEPAAGGAAETLQADYVLV 270 (466)
T ss_pred ----------------------------------cCCEEEECcEEEEEEEcCC---eEEEEEEEcCCCceeEEEeCEEEE
Confidence 8999999999999986542 2334332 2 35799999999
Q ss_pred eeccCcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 270 AIGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 270 a~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
|+|++|+++ .+ +..++.++++| +.||+++||+.|+|||+|||++.+ ++++.|.+||+++|+||++.
T Consensus 271 a~G~~pn~~-~l~~~~~g~~~~~~G-~~vd~~~~Ts~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~ 338 (466)
T PRK06115 271 AIGRRPYTQ-GLGLETVGLETDKRG-MLANDHHRTSVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGK 338 (466)
T ss_pred ccCCccccc-cCCcccccceeCCCC-EEECCCeecCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCC
Confidence 999999997 54 45567776666 778999999999999999999743 68899999999999999975
Q ss_pred CCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE---e-------ecCCccEEEEEE--ECCeEEEE
Q psy1545 348 VKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL---R-------VTRGEEYIKLVM--KDGRMQGA 413 (454)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~---~-------~~~~~~~~k~~~--~~~~i~G~ 413 (454)
.. ...+..+|..+|+.+ +++++|+++.++...+++ +.. . .....+|+|+++ ++++|+|+
T Consensus 339 ~~-~~~~~~~p~~~~t~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~ 411 (466)
T PRK06115 339 AG-EVNYGLIPGVIYTRP------EVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGV 411 (466)
T ss_pred CC-CCCCCCCCeEEECCc------ccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEE
Confidence 32 222344677777765 899999999876543332 211 1 123468999999 48999999
Q ss_pred EEEcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCC
Q psy1545 414 VLIGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDD 451 (454)
Q Consensus 414 ~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 451 (454)
|++|+.. .++.++.+|++++|++||.+.+ +|++++.+
T Consensus 412 ~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~-~~hPt~~e 450 (466)
T PRK06115 412 HMVGPSVSEMIGEFCVAMEFSASAEDIALTC-HPHPTRSE 450 (466)
T ss_pred EEECCCHHHHHHHHHHHHHcCCCHHHHhhCc-cCCCChHH
Confidence 9999873 5788899999999999997654 34444443
No 23
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2.7e-49 Score=417.10 Aligned_cols=388 Identities=20% Similarity=0.269 Sum_probs=309.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC--CCCeEEEECCCCccccccccccccccccc---cchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH--PGESIGLVTPSGIVKAVTKTVPVTKLLSD---ITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~--~g~~v~lie~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~i~~~~~- 74 (454)
+++|||||+|+||+++|..|+++. ++.+|+||++++++.+ ++..++..+.. .++......++.+ +++++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y--~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~ 80 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAY--DRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGE 80 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcc--cCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCC
Confidence 568999999999999999998763 3679999999988753 33222222211 1122222345556 9999876
Q ss_pred eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHH
Q psy1545 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL 150 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~ 150 (454)
+|+.+++..+.|.+.+|+.+.||+||||||++|+.|+++ .+++.+++.+++.++.+....+++++|||||++|+|+
T Consensus 81 ~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~ 160 (847)
T PRK14989 81 RAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEA 160 (847)
T ss_pred EEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHH
Confidence 799999998899888888999999999999999999887 4577888999999988877789999999999999999
Q ss_pred HHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 151 VHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 151 a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
|..|. |.+|+++++.+++++..+|++....+.+.+.+
T Consensus 161 A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~----------------------------------------- 199 (847)
T PRK14989 161 AGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIES----------------------------------------- 199 (847)
T ss_pred HHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHH-----------------------------------------
Confidence 99997 99999999999998877899988888888865
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCcee
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVY 308 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iy 308 (454)
.||++++++.++++..+++ +....+.+++|+++++|.|++|+|++|+.+ +++..|++++++|+|.||++|||+.||||
T Consensus 200 ~GV~v~~~~~v~~I~~~~~-~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~-L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IY 277 (847)
T PRK14989 200 MGVRVHTSKNTLEIVQEGV-EARKTMRFADGSELEVDFIVFSTGIRPQDK-LATQCGLAVAPRGGIVINDSCQTSDPDIY 277 (847)
T ss_pred CCCEEEcCCeEEEEEecCC-CceEEEEECCCCEEEcCEEEECCCcccCch-HHhhcCccCCCCCcEEECCCCcCCCCCEE
Confidence 8999999999999976432 224567889999999999999999999998 88888999988999999999999999999
Q ss_pred ecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc
Q psy1545 309 AAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY 388 (454)
Q Consensus 309 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 388 (454)
|+|||+..... ...+++.|..||++||.||++.. ..|+....+...+.+|++++++|.......+ ..
T Consensus 278 AiGD~a~~~~~------~~gl~~~a~~~a~vaa~~i~g~~------~~~~g~~~~~~lk~~G~~v~s~G~~~~~~~~-~~ 344 (847)
T PRK14989 278 AIGECASWNNR------VFGLVAPGYKMAQVAVDHLLGSE------NAFEGADLSAKLKLLGVDVGGIGDAHGRTPG-AR 344 (847)
T ss_pred EeecceeEcCc------ccccHHHHHHHHHHHHHHhcCCC------cCCCCcccceEEEECCcceEecccccCCCCC-ce
Confidence 99999986321 23578899999999999999752 1244444555678899999999954322111 11
Q ss_pred eEEEeecCCccEEEEEE--ECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCC
Q psy1545 389 EILLRVTRGEEYIKLVM--KDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNI 447 (454)
Q Consensus 389 ~~~~~~~~~~~~~k~~~--~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 447 (454)
...+.+....+|.|+++ ++++|+|++++|+......+..++.+++++.+-.+.|+.|..
T Consensus 345 ~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ 405 (847)
T PRK14989 345 SYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAH 405 (847)
T ss_pred eEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCC
Confidence 12222333468999999 467999999999988788888888899999887777776544
No 24
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.4e-49 Score=396.29 Aligned_cols=378 Identities=18% Similarity=0.223 Sum_probs=278.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc--ccccccccccccccc--------ccc-hh-----------
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI--VKAVTKTVPVTKLLS--------DIT-VE----------- 58 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~--~~~~~~~~~~~~~~~--------~~~-~~----------- 58 (454)
++|||+||||||||++||..|+++ |.+|+|||+++. .+.|.+..+.+.... ++. +.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~--g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA--GKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLR 79 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC--CCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 158999999999999999999998 899999999863 444555443332210 110 00
Q ss_pred hhHHHHHhc-CcEEEcceEEEEeCcccEEEecc---CcEEEecEEEEecCCCCCCCCCCC--ceeeeeccchHHHHHHHh
Q psy1545 59 ETDANKFEG-LCTVIVDTVAAIDPRVNCVITEK---QNRIKYKTLCICTGASPRKIWYSP--HVITIRDTDSVAVLQEKL 132 (454)
Q Consensus 59 ~~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~---g~~i~~d~lviAtG~~p~~~~~~~--~~~~~~~~~~~~~l~~~~ 132 (454)
....+.+.+ +++++.+++.+++.. +|.+.. ...+.||+||||||++|+.|++++ ....+.+..++..+..
T Consensus 80 ~~~~~~~~~~gV~~~~g~~~~~~~~--~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~-- 155 (438)
T PRK07251 80 GKNYAMLAGSGVDLYDAEAHFVSNK--VIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLET-- 155 (438)
T ss_pred HHHHHHHHhCCCEEEEEEEEEccCC--EEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchh--
Confidence 011123344 999999988887644 444432 247999999999999999888872 2223445555555432
Q ss_pred hcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 133 KSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 133 ~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
.+++++|||+|++|+|+|..++ |.+|+++++++++++. .++++...+.+.+.+
T Consensus 156 -~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~----------------------- 210 (438)
T PRK07251 156 -LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEE----------------------- 210 (438)
T ss_pred -cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHH-----------------------
Confidence 4899999999999999999986 9999999999998875 477777766666644
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccC--CCCcee
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVH--GTPFEL 288 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~--~~~l~~ 288 (454)
.||++++++++++++.+++ .+.+. .+++++++|.+++|+|++|+.+ .+. ..++.+
T Consensus 211 ------------------~GI~i~~~~~V~~i~~~~~---~v~v~-~~g~~i~~D~viva~G~~p~~~-~l~l~~~~~~~ 267 (438)
T PRK07251 211 ------------------DGITFLLNAHTTEVKNDGD---QVLVV-TEDETYRFDALLYATGRKPNTE-PLGLENTDIEL 267 (438)
T ss_pred ------------------cCCEEEcCCEEEEEEecCC---EEEEE-ECCeEEEcCEEEEeeCCCCCcc-cCCchhcCcEE
Confidence 8999999999999986542 23333 4567899999999999999987 543 356777
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC-cceeccceeeeeeeee
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE-PVIQDFSFEMFTHMTK 367 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~-~~~~~~~~~~~~~~~~ 367 (454)
+++|+|.||+++||+.|||||+|||++.+ ++.+.|..+|+.++.++++..... ..+..+|.. .
T Consensus 268 ~~~g~i~vd~~~~t~~~~IyaiGD~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~ 331 (438)
T PRK07251 268 TERGAIKVDDYCQTSVPGVFAVGDVNGGP----------QFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT------M 331 (438)
T ss_pred CCCCcEEECCCcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCccccccCCCCEE------E
Confidence 78899999999999999999999998743 577889999999999998642110 111123333 3
Q ss_pred ecCeEEEEeecccCCcCCCCceEEE-----e-------ecCCccEEEEEE--ECCeEEEEEEEcCCc--hHHHHHHHHhc
Q psy1545 368 FFGYKVILLGLFNGQTLENDYEILL-----R-------VTRGEEYIKLVM--KDGRMQGAVLIGETE--IEEMCENLILN 431 (454)
Q Consensus 368 ~~~~~~~~vG~~~~~~~~~~~~~~~-----~-------~~~~~~~~k~~~--~~~~i~G~~~~g~~~--~~~~~~~~i~~ 431 (454)
+++++++.+|+++.++...+++... . .....+|+|+++ ++++|+|+|++|+.. .++.++.+|++
T Consensus 332 ~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~ 411 (438)
T PRK07251 332 FITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDN 411 (438)
T ss_pred ECCCceEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHC
Confidence 4566999999998876543332111 1 112367999999 479999999999873 57899999999
Q ss_pred CCCcchhhhhc-cCCCCC
Q psy1545 432 QLDLTDIADDL-LNPNID 448 (454)
Q Consensus 432 ~~~~~~~~~~~-~~~~~~ 448 (454)
++|++++.+.+ .||+++
T Consensus 412 ~~t~~~l~~~~~~hPt~~ 429 (438)
T PRK07251 412 KIPYTYFKKQIFTHPTMA 429 (438)
T ss_pred CCCHHHHhcccccCCChH
Confidence 99999997755 366543
No 25
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=2.5e-49 Score=398.62 Aligned_cols=376 Identities=19% Similarity=0.257 Sum_probs=282.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc--------------------cc----ccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL--------------------LS----DITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~--------------------~~----~~~~ 57 (454)
+|||+|||||+||++||..|++. |.+|+|||++...+.|.+..+.+.. +. ..++
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~--g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 83 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATER--GARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDR 83 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCH
Confidence 48999999999999999999998 8899999998766655554321110 10 1111
Q ss_pred h------hhH--------H-HHHhc--CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCCC-cee
Q psy1545 58 E------ETD--------A-NKFEG--LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYSP-HVI 117 (454)
Q Consensus 58 ~------~~~--------~-~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~~-~~~ 117 (454)
. ... . ..+.. +++++.++++.++++.+.|.+.+|. +++||+||||||++|+.|++++ .-.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~ 163 (468)
T PRK14694 84 SALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAET 163 (468)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCCCCCC
Confidence 1 011 1 11222 7899999999999998888887763 7999999999999999998872 112
Q ss_pred eeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhh
Q psy1545 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 195 (454)
.+.+.++...+.. .+++++|||+|++|+|+|..|. |.+|+++++ +++++. +++++...+.+.+.+
T Consensus 164 ~~~~~~~~~~l~~---~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~l~~~l~~-------- 230 (468)
T PRK14694 164 PYLTSTSALELDH---IPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEAIEAAFRR-------- 230 (468)
T ss_pred ceEcchhhhchhc---CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHHHHHHHHh--------
Confidence 2344455554432 3799999999999999999886 999999987 456654 677777777777754
Q ss_pred hhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 196 IFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.||++++++.+.+++.+++ .+.+.++++ ++++|.|++|+|++|
T Consensus 231 ---------------------------------~GI~v~~~~~v~~i~~~~~---~~~v~~~~~-~i~~D~vi~a~G~~p 273 (468)
T PRK14694 231 ---------------------------------EGIEVLKQTQASEVDYNGR---EFILETNAG-TLRAEQLLVATGRTP 273 (468)
T ss_pred ---------------------------------CCCEEEeCCEEEEEEEcCC---EEEEEECCC-EEEeCEEEEccCCCC
Confidence 8999999999999986542 344555444 699999999999999
Q ss_pred Cccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcc
Q psy1545 276 NSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353 (454)
Q Consensus 276 ~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 353 (454)
+.+ ++ ...+++. ++|+|.||+++||++|+|||+|||+..+ .+.+.|..||+.||.||++... +..
T Consensus 274 n~~-~l~l~~~g~~~-~~G~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~~~~~-~~~ 340 (468)
T PRK14694 274 NTE-NLNLESIGVET-ERGAIRIDEHLQTTVSGIYAAGDCTDQP----------QFVYVAAAGGSRAAINMTGGDA-SLD 340 (468)
T ss_pred CcC-CCCchhcCccc-CCCeEeeCCCcccCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHhcCCCc-ccc
Confidence 998 64 3456665 5789999999999999999999998743 5678899999999999987532 112
Q ss_pred eeccceeeeeeeeeecCeEEEEeecccCCcCCCCceE--EE-e---------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 354 IQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEI--LL-R---------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~--~~-~---------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
+..+|..+| ++++++++|+++.++...+++. .. . .....+|+|+++ ++++|||+|++|+.
T Consensus 341 ~~~~p~~~~------~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~ 414 (468)
T PRK14694 341 LSAMPEVIF------TDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGE 414 (468)
T ss_pred cCCCCeEEE------CCCCeEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCC
Confidence 223455444 4559999999998775433321 11 1 113468999999 58999999999987
Q ss_pred --chHHHHHHHHhcCCCcchhhhhcc-CCCCC
Q psy1545 420 --EIEEMCENLILNQLDLTDIADDLL-NPNID 448 (454)
Q Consensus 420 --~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 448 (454)
+.++.++.+|++++|++||.+..+ ||+++
T Consensus 415 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 446 (468)
T PRK14694 415 AGELIQTAVMALRARMTVNEIADELFPYLTMV 446 (468)
T ss_pred HHHHHHHHHHHHHCCCCHHHHhccccCCCchH
Confidence 357899999999999999977664 76654
No 26
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=3.8e-49 Score=396.55 Aligned_cols=380 Identities=18% Similarity=0.204 Sum_probs=280.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC---------Cccccccccccccccc--------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS---------GIVKAVTKTVPVTKLL-------------------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~---------~~~~~~~~~~~~~~~~-------------------- 52 (454)
+||+||||||+||+.||..+++. |.+|++||+. ...+.|.++.+.+...
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~--G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY--GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 58999999999999999999998 9999999973 2445555544332110
Q ss_pred ----cccchh--------------hhHHHHHhc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCCC
Q psy1545 53 ----SDITVE--------------ETDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 53 ----~~~~~~--------------~~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
...++. ......+.. +++++.+.+.+++++...|...++ ..++||+||||||++|+.|+
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ 159 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPG 159 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCC
Confidence 001111 011112333 999999999999987655543343 37999999999999999998
Q ss_pred CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccC
Q psy1545 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189 (454)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~ 189 (454)
++..-....+.+++..+.. .+++++|||+|++|+|+|..|+ |.+||++++ +++++ .+|+++.+.+.+.|++
T Consensus 160 ipG~~~~~~~~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~~l~~~L~~-- 232 (484)
T TIGR01438 160 IPGAKELCITSDDLFSLPY---CPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCANKVGEHMEE-- 232 (484)
T ss_pred CCCccceeecHHHhhcccc---cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHHHHHHHHHH--
Confidence 8721111235555554432 3789999999999999999986 999999998 46665 4788888888877755
Q ss_pred CCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---cEEecCE
Q psy1545 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDI 266 (454)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g---~~~~~D~ 266 (454)
.||++++++.+.+++..++ .+.++++++ +++++|.
T Consensus 233 ---------------------------------------~gV~i~~~~~v~~v~~~~~---~~~v~~~~~~~~~~i~~D~ 270 (484)
T TIGR01438 233 ---------------------------------------HGVKFKRQFVPIKVEQIEA---KVKVTFTDSTNGIEEEYDT 270 (484)
T ss_pred ---------------------------------------cCCEEEeCceEEEEEEcCC---eEEEEEecCCcceEEEeCE
Confidence 8999999999999886542 345666655 4799999
Q ss_pred EEEeeccCcCcccc--cCCCCceecC-CCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhh
Q psy1545 267 VVSAIGVVPNSNIQ--VHGTPFELAP-DCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKC 343 (454)
Q Consensus 267 vi~a~G~~p~~~~~--~~~~~l~~~~-~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~ 343 (454)
|++|+|++||++ + ++..++++++ +|+|.||+++||+.|+|||+|||+... .++++.|..||+.+|+|
T Consensus 271 vl~a~G~~pn~~-~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~---------~~l~~~A~~~g~~aa~~ 340 (484)
T TIGR01438 271 VLLAIGRDACTR-KLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDK---------QELTPVAIQAGRLLAQR 340 (484)
T ss_pred EEEEecCCcCCC-cCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCC---------ccchHHHHHHHHHHHHH
Confidence 999999999998 5 4566788765 489999999999999999999998632 35788899999999999
Q ss_pred hcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEEe---e---------cCCccEEEEEE-E
Q psy1545 344 MVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILLR---V---------TRGEEYIKLVM-K 406 (454)
Q Consensus 344 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~~---~---------~~~~~~~k~~~-~ 406 (454)
|++.......+...|..+|+. ++++++|+++.++... .+..... . ..+.+|+|+++ +
T Consensus 341 i~~~~~~~~~~~~~p~~i~~~------p~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~ 414 (484)
T TIGR01438 341 LFSGSTVICDYENVPTTVFTP------LEYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNR 414 (484)
T ss_pred HhcCCCcccccccCCeEEeCC------CceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEec
Confidence 987432111222345555544 4999999999776532 2222110 0 11458999998 3
Q ss_pred --CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 407 --DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 407 --~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
+++|||+|++|+. +.++.++.+|++++|++||.+.. .||+++
T Consensus 415 ~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~s 461 (484)
T TIGR01438 415 KENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCA 461 (484)
T ss_pred CCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChH
Confidence 7999999999986 46789999999999999998765 366654
No 27
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=5e-49 Score=397.16 Aligned_cols=379 Identities=20% Similarity=0.237 Sum_probs=279.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----------------------cccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----------------------SDITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----------------------~~~~~~ 58 (454)
.||++||||||||++||..|+++ |++|+|||++...+.|.++.+.+... ...++.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL--GLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 48999999999999999999998 99999999987766666654332211 011111
Q ss_pred ------hh--------HHHHHhc-CcEEEcceEEEEeCc-------ccEEEeccC--cEEEecEEEEecCCCCCCCCCC-
Q psy1545 59 ------ET--------DANKFEG-LCTVIVDTVAAIDPR-------VNCVITEKQ--NRIKYKTLCICTGASPRKIWYS- 113 (454)
Q Consensus 59 ------~~--------~~~~~~~-~i~~~~~~v~~i~~~-------~~~v~~~~g--~~i~~d~lviAtG~~p~~~~~~- 113 (454)
+. ....+.+ +++++.+++++++++ ...|.+.+| .++.||+||||||++|+.++..
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~ 161 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCCC
Confidence 00 1112334 899999999999988 666776666 4799999999999999765433
Q ss_pred -CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCC
Q psy1545 114 -PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190 (454)
Q Consensus 114 -~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~ 190 (454)
... .+.+.+++..+.. .+++++|||+|++|+|+|..|+ |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 162 ~~~~-~~~~~~~~~~~~~---~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~--- 233 (472)
T PRK05976 162 FDGE-YVISSDEALSLET---LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKK--- 233 (472)
T ss_pred CCCc-eEEcchHhhCccc---cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHh---
Confidence 222 2345555555433 3799999999999999999987 9999999999998875 577777777676654
Q ss_pred CChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEE
Q psy1545 191 AKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVV 268 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi 268 (454)
.||++++++.+++++...+ +....+.+.+| +++++|.++
T Consensus 234 --------------------------------------~gI~i~~~~~v~~i~~~~~-~~~~~~~~~~g~~~~i~~D~vi 274 (472)
T PRK05976 234 --------------------------------------LGVRVVTGAKVLGLTLKKD-GGVLIVAEHNGEEKTLEADKVL 274 (472)
T ss_pred --------------------------------------cCCEEEeCcEEEEEEEecC-CCEEEEEEeCCceEEEEeCEEE
Confidence 8999999999999975111 11333445566 469999999
Q ss_pred EeeccCcCcccccC--CCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 269 SAIGVVPNSNIQVH--GTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 269 ~a~G~~p~~~~~~~--~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+|+|++|+.+ .+. ..++.. .+|++.||+++||+.|+|||+|||+.. +++++.|..||+.||+||++
T Consensus 275 ~a~G~~p~~~-~l~l~~~~~~~-~~g~i~Vd~~l~ts~~~IyAiGD~~~~----------~~~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 275 VSVGRRPNTE-GIGLENTDIDV-EGGFIQIDDFCQTKERHIYAIGDVIGE----------PQLAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred EeeCCccCCC-CCCchhcCcee-cCCEEEECCCcccCCCCEEEeeecCCC----------cccHHHHHHHHHHHHHHHcC
Confidence 9999999987 543 334544 468999999999999999999999863 35788999999999999987
Q ss_pred CCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE-----e-------ecCCccEEEEEE--ECCeEEE
Q psy1545 347 AVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL-----R-------VTRGEEYIKLVM--KDGRMQG 412 (454)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~-----~-------~~~~~~~~k~~~--~~~~i~G 412 (454)
.......+...|. ..+++++++.+|+++.+++..+++... . .....+|+|+++ ++++|+|
T Consensus 343 ~~~~~~~~~~~p~------~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG 416 (472)
T PRK05976 343 KKPRPFDYAAIPA------CCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVVADRDTHDILG 416 (472)
T ss_pred CCCCCCCCCCCCE------EEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEEEEECCCCEEEE
Confidence 4211111111222 345566999999998776544332111 0 123578999999 4799999
Q ss_pred EEEEcCCc--hHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 413 AVLIGETE--IEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 413 ~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
+|++|+.. .++.+..+|++++|++|+.+.+ .||++
T Consensus 417 ~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 454 (472)
T PRK05976 417 VQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTL 454 (472)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCh
Confidence 99999873 4678899999999999997765 36654
No 28
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=8.7e-49 Score=395.25 Aligned_cols=377 Identities=17% Similarity=0.198 Sum_probs=278.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC-Cccccccccccccc-------------------cc----cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS-GIVKAVTKTVPVTK-------------------LL----SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~-~~~~~~~~~~~~~~-------------------~~----~~~~~ 57 (454)
++|++|||||+||+++|..|++. |.+|++||++ ...+.|.++.+.+. .+ ...++
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~--g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 93 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEH--GARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDR 93 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCH
Confidence 58999999999999999999998 8999999997 44444444321110 00 01111
Q ss_pred hh----------h-----HHHHHhc--CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCCC-cee
Q psy1545 58 EE----------T-----DANKFEG--LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYSP-HVI 117 (454)
Q Consensus 58 ~~----------~-----~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~~-~~~ 117 (454)
.. + +...+.. +++++.+++.+++.+...|.+.+|+ +++||+||||||++|+.|+++. ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~ 173 (479)
T PRK14727 94 GLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDT 173 (479)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCcc
Confidence 10 0 1111222 7899999999999877677766664 6999999999999999998872 111
Q ss_pred eeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhh
Q psy1545 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 195 (454)
.+.+..+..... ..+++++|||+|++|+|+|..+. |.+|+++++. ++++. +|+++...+.+.+.+
T Consensus 174 ~~~~~~~~l~~~---~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~-------- 240 (479)
T PRK14727 174 PYWTSTEALFSD---ELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEK-------- 240 (479)
T ss_pred ceecchHHhccc---cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHh--------
Confidence 223333333221 13799999999999999999986 9999999885 56654 677777777777654
Q ss_pred hhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 196 IFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.||++++++.+++++.+++ .+.+..+++ ++++|.|++|+|++|
T Consensus 241 ---------------------------------~GV~i~~~~~V~~i~~~~~---~~~v~~~~g-~i~aD~VlvA~G~~p 283 (479)
T PRK14727 241 ---------------------------------EGIEVLNNTQASLVEHDDN---GFVLTTGHG-ELRAEKLLISTGRHA 283 (479)
T ss_pred ---------------------------------CCCEEEcCcEEEEEEEeCC---EEEEEEcCC-eEEeCEEEEccCCCC
Confidence 8999999999999986542 345555555 699999999999999
Q ss_pred Ccccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcc
Q psy1545 276 NSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353 (454)
Q Consensus 276 ~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~ 353 (454)
++. + ++..+++++++|+|.||+++||++|||||+|||+..+ .+.+.|..||+.||.||++.... ..
T Consensus 284 n~~-~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~G~~aa~~i~g~~~~-~~ 351 (479)
T PRK14727 284 NTH-DLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLP----------QFVYVAAAAGSRAGINMTGGNAT-LD 351 (479)
T ss_pred Ccc-CCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcc----------hhhhHHHHHHHHHHHHHcCCCcc-cc
Confidence 997 5 4556788888899999999999999999999999753 46778999999999999975321 11
Q ss_pred eeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEE---Ee---------ecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 354 IQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEIL---LR---------VTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~---~~---------~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
....|+.+ +++++++.+|+++.++...+++.. .. .....+|+|+++ ++++|||+|++|+.
T Consensus 352 ~~~~p~~~------~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~ 425 (479)
T PRK14727 352 LSAMPAVI------FTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHE 425 (479)
T ss_pred cccCCcEE------EecCceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCC
Confidence 22234434 445599999999887754333221 10 112468999999 48999999999988
Q ss_pred c--hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 420 E--IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 420 ~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
. .++.+..+|++++|++||.+.. .||+++
T Consensus 426 a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 457 (479)
T PRK14727 426 GGELIQSAALAIHNRMTVEELADQLFPYLTMV 457 (479)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCCccCCChH
Confidence 3 5789999999999999997665 366654
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.1e-48 Score=403.79 Aligned_cols=376 Identities=18% Similarity=0.241 Sum_probs=280.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc--------------------c----cccch
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL--------------------L----SDITV 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~--------------------~----~~~~~ 57 (454)
+||++||||||||++||..|++. |.+|+|||++...+.|.++.+.+.. + ...++
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~--G~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQ--GARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCcceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 48999999999999999999998 8999999998666666554322110 0 01111
Q ss_pred hh---h------------HHHHHhc--CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCC--Cce
Q psy1545 58 EE---T------------DANKFEG--LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYS--PHV 116 (454)
Q Consensus 58 ~~---~------------~~~~~~~--~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~--~~~ 116 (454)
.. + ....+.+ +++++.++++++++....|.+.+|+ .++||+||||||++|+.|+++ ...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~ 255 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET 255 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence 10 0 0111223 6899999999999887777766653 699999999999999999887 222
Q ss_pred eeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChh
Q psy1545 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPE 194 (454)
Q Consensus 117 ~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~ 194 (454)
.+.+..+..... ..+++++|||+|++|+|+|..|. |.+|+++++. .+++. +|+++...+.+.+.+
T Consensus 256 -~~~~~~~~~~~~---~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~------- 322 (561)
T PRK13748 256 -PYWTSTEALVSD---TIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFRA------- 322 (561)
T ss_pred -ceEccHHHhhcc---cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHHH-------
Confidence 233333333222 23799999999999999999987 9999999985 45554 688888877777755
Q ss_pred hhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 195 TIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
.||++++++.+++++.+++ .+.+.++++ ++++|.|++|+|++
T Consensus 323 ----------------------------------~gI~i~~~~~v~~i~~~~~---~~~v~~~~~-~i~~D~vi~a~G~~ 364 (561)
T PRK13748 323 ----------------------------------EGIEVLEHTQASQVAHVDG---EFVLTTGHG-ELRADKLLVATGRA 364 (561)
T ss_pred ----------------------------------CCCEEEcCCEEEEEEecCC---EEEEEecCC-eEEeCEEEEccCCC
Confidence 8999999999999986542 344555555 69999999999999
Q ss_pred cCcccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 275 PNSNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 275 p~~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
||.. + ++..+++++++|+|.||+++||+.|||||+|||+..+ .+.+.|..||++||.||++... ..
T Consensus 365 pn~~-~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~-~~ 432 (561)
T PRK13748 365 PNTR-SLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQP----------QFVYVAAAAGTRAAINMTGGDA-AL 432 (561)
T ss_pred cCCC-CcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCc----------cchhHHHHHHHHHHHHHcCCCc-cc
Confidence 9997 5 4567888888999999999999999999999999753 5677899999999999986421 11
Q ss_pred ceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEE---e-------ecCCccEEEEEEE--CCeEEEEEEEcC
Q psy1545 353 VIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILL---R-------VTRGEEYIKLVMK--DGRMQGAVLIGE 418 (454)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~---~-------~~~~~~~~k~~~~--~~~i~G~~~~g~ 418 (454)
.....|.. .+++++++++|+++.++...+++ ... . .....+|+|++++ +++|||+|++|+
T Consensus 433 ~~~~~p~~------~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~ 506 (561)
T PRK13748 433 DLTAMPAV------VFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAP 506 (561)
T ss_pred CCCCCCeE------EEccCCceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECC
Confidence 11123333 35566999999999776543322 111 1 1134689999993 899999999998
Q ss_pred Cc--hHHHHHHHHhcCCCcchhhhhcc-CCCCC
Q psy1545 419 TE--IEEMCENLILNQLDLTDIADDLL-NPNID 448 (454)
Q Consensus 419 ~~--~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 448 (454)
.. .++.+..+|++++|+++|.+.++ ||+++
T Consensus 507 ~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~ 539 (561)
T PRK13748 507 EAGELIQTAALAIRNRMTVQELADQLFPYLTMV 539 (561)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHhcccccCCchH
Confidence 74 57888999999999999977664 66654
No 30
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-48 Score=398.70 Aligned_cols=380 Identities=17% Similarity=0.227 Sum_probs=279.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC--Cccccccccccccccc----------------------c----
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS--GIVKAVTKTVPVTKLL----------------------S---- 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~--~~~~~~~~~~~~~~~~----------------------~---- 53 (454)
+||++|||+|++|+.||..++++ |.+|+|||+. ...+.|.++.+.+... .
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~--G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMER--GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 47999999999999999999998 9999999975 5566666654332110 0
Q ss_pred ------------------ccchhh--------------hHHHHHhc-C-------cEEEcceEEEEeCcccEEEeccCcE
Q psy1545 54 ------------------DITVEE--------------TDANKFEG-L-------CTVIVDTVAAIDPRVNCVITEKQNR 93 (454)
Q Consensus 54 ------------------~~~~~~--------------~~~~~~~~-~-------i~~~~~~v~~i~~~~~~v~~~~g~~ 93 (454)
..++.. .....+.+ + ++++.+...+++++...+. .++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~-~~g~~ 272 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE-KSGKE 272 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc-cCCEE
Confidence 011110 01111222 2 7888888888887654443 35678
Q ss_pred EEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 94 IKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 94 i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
+.||+||||||++|+.|+++ .....+.+.+++..+... +++++|||+|++|+|+|..+. |.+||++++.+++++
T Consensus 273 i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~l---pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 273 FKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGL---QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred EECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhc---CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 99999999999999988754 122234566777666543 899999999999999999886 999999999999988
Q ss_pred cccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCcc
Q psy1545 171 TFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTC 250 (454)
Q Consensus 171 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 250 (454)
. +|+++...+.+.+. ++.||++++++.|++++..++ ..
T Consensus 350 ~-~d~eis~~l~~~ll----------------------------------------~~~GV~I~~~~~V~~I~~~~~-~~ 387 (659)
T PTZ00153 350 L-LDADVAKYFERVFL----------------------------------------KSKPVRVHLNTLIEYVRAGKG-NQ 387 (659)
T ss_pred c-CCHHHHHHHHHHHh----------------------------------------hcCCcEEEcCCEEEEEEecCC-ce
Confidence 4 78888777766642 237999999999999986542 12
Q ss_pred ceEEEecC-------C--------cEEecCEEEEeeccCcCccccc--CCCCceecCCCceEeccccccc------cCce
Q psy1545 251 NAYVKLTN-------G--------HTHACDIVVSAIGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTS------ISNV 307 (454)
Q Consensus 251 ~~~v~~~~-------g--------~~~~~D~vi~a~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~------~~~I 307 (454)
.+.+.+.+ + +++++|.|++|+|++||++ .+ +..++.++ +|+|.||++|||+ +|+|
T Consensus 388 ~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~-~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~I 465 (659)
T PTZ00153 388 PVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTN-NLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNI 465 (659)
T ss_pred EEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCc-cCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCE
Confidence 24454421 1 3799999999999999998 64 45567765 5899999999997 6999
Q ss_pred eecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCC------------CcceeccceeeeeeeeeecCeEEEE
Q psy1545 308 YAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN------------EPVIQDFSFEMFTHMTKFFGYKVIL 375 (454)
Q Consensus 308 ya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (454)
||+|||++. +++++.|..||+++|+||++.... ...+..+|..+|+. +++++
T Consensus 466 YAiGDv~g~----------~~La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~ift~------PeiA~ 529 (659)
T PTZ00153 466 FCIGDANGK----------QMLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTT------PELAF 529 (659)
T ss_pred EEEEecCCC----------ccCHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEEEECc------CceEE
Confidence 999999863 368899999999999999975210 01122344444544 49999
Q ss_pred eecccCCcCCCC----ceE---EEee-----------------------------cCCccEEEEEE--ECCeEEEEEEEc
Q psy1545 376 LGLFNGQTLEND----YEI---LLRV-----------------------------TRGEEYIKLVM--KDGRMQGAVLIG 417 (454)
Q Consensus 376 vG~~~~~~~~~~----~~~---~~~~-----------------------------~~~~~~~k~~~--~~~~i~G~~~~g 417 (454)
||+++.++...+ +.+ .+.. +...+|+|+++ ++++|||+|++|
T Consensus 530 VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG 609 (659)
T PTZ00153 530 IGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVG 609 (659)
T ss_pred eeCCHHHHHhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEEC
Confidence 999998765432 111 1110 01578999999 589999999999
Q ss_pred CCc--hHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 418 ETE--IEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 418 ~~~--~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
++. .++.++.+|++++|++||.+.++ ||++
T Consensus 610 ~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~ 642 (659)
T PTZ00153 610 SYASILIHEGVLAINLKLSVKDLAHMVHSHPTI 642 (659)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCh
Confidence 984 57889999999999999977763 5554
No 31
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.4e-48 Score=392.14 Aligned_cols=374 Identities=18% Similarity=0.255 Sum_probs=278.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-------------------c------ccchh
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-------------------S------DITVE 58 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-------------------~------~~~~~ 58 (454)
+++|||||+||++||..+++. |.+|+|||+++..+.|.++.+.+... . ..++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~--g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN--GKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC--CCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHH
Confidence 899999999999999999998 99999999998887777654332100 0 01111
Q ss_pred h------h-------HHHH-Hhc-CcEEEcceEEEEeCcccEEEeccC-cEEEecEEEEecCCCCCCCCCCC-ceeeeec
Q psy1545 59 E------T-------DANK-FEG-LCTVIVDTVAAIDPRVNCVITEKQ-NRIKYKTLCICTGASPRKIWYSP-HVITIRD 121 (454)
Q Consensus 59 ~------~-------~~~~-~~~-~i~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lviAtG~~p~~~~~~~-~~~~~~~ 121 (454)
. . ..+. +.. +++++.+++.+++++...|...++ .+++||+||||||++|+.|++++ ....+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~ 159 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIIN 159 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence 0 0 0111 223 899999999999987767765455 37999999999999998877651 1122345
Q ss_pred cchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh
Q psy1545 122 TDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199 (454)
Q Consensus 122 ~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~ 199 (454)
..++..+.+ .+++++|||+|++|+|+|..+. |.+|+++++.+++++. +++++.+.+.+.+.+
T Consensus 160 ~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~------------ 223 (458)
T PRK06912 160 SKHAMSLPS---IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLEN------------ 223 (458)
T ss_pred chHHhCccc---cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHH------------
Confidence 555555443 3799999999999999999886 9999999999998875 577777777766654
Q ss_pred cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCc
Q psy1545 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 200 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~ 277 (454)
.||++++++.+++++.++. .+.+.. +| .++++|.|++|+|++|+.
T Consensus 224 -----------------------------~GI~i~~~~~V~~i~~~~~---~v~~~~-~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 224 -----------------------------DGVKIFTGAALKGLNSYKK---QALFEY-EGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred -----------------------------CCCEEEECCEEEEEEEcCC---EEEEEE-CCceEEEEeCEEEEecCCccCC
Confidence 8999999999999976542 233332 34 469999999999999998
Q ss_pred cccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCccee
Q psy1545 278 NIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355 (454)
Q Consensus 278 ~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 355 (454)
+ .+ +..++.++++| |.||+++||+.|||||+|||+.. +++++.|..||+.||.||++... ...+.
T Consensus 271 ~-~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~VyA~GD~~~~----------~~la~~A~~~g~~aa~~~~g~~~-~~~~~ 337 (458)
T PRK06912 271 Q-QLNLEKAGVQFSNKG-ISVNEHMQTNVPHIYACGDVIGG----------IQLAHVAFHEGTTAALHASGEDV-KVNYH 337 (458)
T ss_pred C-CCCchhcCceecCCC-EEeCCCeecCCCCEEEEeecCCC----------cccHHHHHHHHHHHHHHHcCCCC-CCCcC
Confidence 7 54 45577776655 99999999999999999999863 36888999999999999987421 11122
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEEe------------ecCCccEEEEEE--ECCeEEEEEEEcCCc-
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR------------VTRGEEYIKLVM--KDGRMQGAVLIGETE- 420 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~------------~~~~~~~~k~~~--~~~~i~G~~~~g~~~- 420 (454)
.+|..+|+ +++++.+|+++.++.....+.... .....+|+|+++ ++++|+|+|++|+..
T Consensus 338 ~~p~~v~~------~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~ 411 (458)
T PRK06912 338 AVPRCIYT------SPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRAT 411 (458)
T ss_pred CCCeEEec------CchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHH
Confidence 34444444 448999999997765433221110 112468999999 489999999999873
Q ss_pred -hHHHHHHHHhcCCCcchhhhhcc-CCCC
Q psy1545 421 -IEEMCENLILNQLDLTDIADDLL-NPNI 447 (454)
Q Consensus 421 -~~~~~~~~i~~~~~~~~~~~~~~-~~~~ 447 (454)
.++.++.+|++++|++|+.+.++ ||++
T Consensus 412 e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 440 (458)
T PRK06912 412 ELIGQGTVMIHTEVTADIMEDFIAAHPTL 440 (458)
T ss_pred HHHHHHHHHHHCCCCHHHHhhCcccCCCH
Confidence 56888999999999999987742 5543
No 32
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.1e-48 Score=392.43 Aligned_cols=378 Identities=20% Similarity=0.249 Sum_probs=277.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC-------CCcccccccccccccc--------------------cc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP-------SGIVKAVTKTVPVTKL--------------------LS- 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~-------~~~~~~~~~~~~~~~~--------------------~~- 53 (454)
+||++|||||+||++||..+++. +.+|+|||+ ....+.|.++.+.+.. ..
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~--g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQL--GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhC--CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 58999999999999999999998 899999998 4444445444332210 00
Q ss_pred ---ccchh---h----------hHHHH-Hhc-CcEEEcceEEEEeCc--ccEEEec--cCcEEEecEEEEecCCCCCCCC
Q psy1545 54 ---DITVE---E----------TDANK-FEG-LCTVIVDTVAAIDPR--VNCVITE--KQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 54 ---~~~~~---~----------~~~~~-~~~-~i~~~~~~v~~i~~~--~~~v~~~--~g~~i~~d~lviAtG~~p~~~~ 111 (454)
..++. . ..... +.. +++++.+++.+++.. ..+|.+. ++++++||+||||||++|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p 161 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLP 161 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCC
Confidence 00110 0 01111 223 899999999888732 3456553 3458999999999999997655
Q ss_pred CC-CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 112 YS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 112 ~~-~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
.. .....+.+.+++..+.. .+++++|||+|++|+|+|..+. |.+||++++++++++. +++++...+.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~---~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~- 236 (475)
T PRK06327 162 GVPFDNKIILDNTGALNFTE---VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTK- 236 (475)
T ss_pred CCCCCCceEECcHHHhcccc---cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHH-
Confidence 33 11122345455544432 3899999999999999999886 9999999999988874 577777777776654
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC--C--cEEec
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN--G--HTHAC 264 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~--g--~~~~~ 264 (454)
.||+++++++|++++.+++ .+.+.+.+ | +++++
T Consensus 237 ----------------------------------------~gi~i~~~~~v~~i~~~~~---~v~v~~~~~~g~~~~i~~ 273 (475)
T PRK06327 237 ----------------------------------------QGLDIHLGVKIGEIKTGGK---GVSVAYTDADGEAQTLEV 273 (475)
T ss_pred ----------------------------------------cCcEEEeCcEEEEEEEcCC---EEEEEEEeCCCceeEEEc
Confidence 8999999999999987642 34555544 3 57999
Q ss_pred CEEEEeeccCcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHh
Q psy1545 265 DIVVSAIGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAK 342 (454)
Q Consensus 265 D~vi~a~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~ 342 (454)
|.|++|+|++|+.+ ++ +..++.++++|+|.||+++||+.|+|||+|||+..+ ++++.|..||+.||.
T Consensus 274 D~vl~a~G~~p~~~-~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~----------~~~~~A~~~G~~aa~ 342 (475)
T PRK06327 274 DKLIVSIGRVPNTD-GLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP----------MLAHKAEEEGVAVAE 342 (475)
T ss_pred CEEEEccCCccCCC-CCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc----------chHHHHHHHHHHHHH
Confidence 99999999999987 43 456788888999999999999999999999998743 578899999999999
Q ss_pred hhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE-----e-------ecCCccEEEEEE--ECC
Q psy1545 343 CMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL-----R-------VTRGEEYIKLVM--KDG 408 (454)
Q Consensus 343 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~-----~-------~~~~~~~~k~~~--~~~ 408 (454)
||++... +..+..+|..+| ++++++.+|+++.++...+++... . .....+|+|+++ +++
T Consensus 343 ~i~g~~~-~~~~~~~p~~~~------~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~ 415 (475)
T PRK06327 343 RIAGQKG-HIDYNTIPWVIY------TSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTD 415 (475)
T ss_pred HHcCCCC-CCCCCCCCeEEe------CCcceEEEeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEEEEEEECCCC
Confidence 9987432 111222344444 355999999998776543332111 0 123468999999 489
Q ss_pred eEEEEEEEcCCc--hHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 409 RMQGAVLIGETE--IEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 409 ~i~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
+|+|+|++|+.. .++.+..+|++++|++||.+.+ .||++
T Consensus 416 ~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 457 (475)
T PRK06327 416 EILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTL 457 (475)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCCh
Confidence 999999999873 5688899999999999997764 36654
No 33
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.5e-48 Score=393.48 Aligned_cols=378 Identities=23% Similarity=0.283 Sum_probs=275.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-------------------c----cccch-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-------------------L----SDITV- 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-------------------~----~~~~~- 57 (454)
+||+||||||+||++||..|++. |.+|+|||++...+.|.++.+.+.. + ...++
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL--GKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 68999999999999999999998 8999999996555544433221100 0 01111
Q ss_pred --hh---hHH--------HH-Hhc-CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCCC-CCCCCCCC-ceeeee
Q psy1545 58 --EE---TDA--------NK-FEG-LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGAS-PRKIWYSP-HVITIR 120 (454)
Q Consensus 58 --~~---~~~--------~~-~~~-~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~~-~~~~~~ 120 (454)
.. ... .. +.. +++++.+++..++... +.+ +++++.||+||||||++ |..|.... ....+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~--v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~ 157 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNT--VEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLL 157 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCE--EEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEE
Confidence 00 000 11 222 7888888888887654 444 67789999999999999 55444321 122334
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.++...+.. .+++++|||+|++|+|+|..|. |.+|+++++.+++++. +|+++...+.+.+.+
T Consensus 158 ~~~~~~~~~~---~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~----------- 222 (460)
T PRK06292 158 TSDDAFELDK---LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSK----------- 222 (460)
T ss_pred CchHHhCccc---cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhh-----------
Confidence 5555554433 3899999999999999999886 9999999999998874 678777777777654
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcC
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~ 276 (454)
. |++++++.+.+++.+++ ..+.+++.++ +++++|.|++|+|++|+
T Consensus 223 ------------------------------~-I~i~~~~~v~~i~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 223 ------------------------------E-FKIKLGAKVTSVEKSGD--EKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred ------------------------------c-cEEEcCCEEEEEEEcCC--ceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 7 99999999999986542 1233433333 57999999999999999
Q ss_pred cccc--cCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcce
Q psy1545 277 SNIQ--VHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVI 354 (454)
Q Consensus 277 ~~~~--~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~ 354 (454)
.+ . ++..+++++++|+|.||+++||+.|||||+|||+..+ ++++.|..||++||.||++........
T Consensus 270 ~~-~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~----------~~~~~A~~qg~~aa~~i~~~~~~~~~~ 338 (460)
T PRK06292 270 TD-GLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP----------PLLHEAADEGRIAAENAAGDVAGGVRY 338 (460)
T ss_pred CC-CCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc----------cchhHHHHHHHHHHHHhcCCCCCCcCC
Confidence 98 4 4556788888899999999999999999999998743 578899999999999998742111112
Q ss_pred eccceeeeeeeeeecCeEEEEeecccCCcCCCCce--EEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCCc
Q psy1545 355 QDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--ILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGETE 420 (454)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~~ 420 (454)
..+|..+|+. ++++++|+++.++...+++ .... .....+|+|+++ ++++|+|+|++|+..
T Consensus 339 ~~~p~~~~~~------~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a 412 (460)
T PRK06292 339 HPIPSVVFTD------PQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDA 412 (460)
T ss_pred CCCCeEEECC------CccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCH
Confidence 2344445544 4899999999876543332 1110 123578999999 479999999999983
Q ss_pred --hHHHHHHHHhcCCCcchhhhhccCCCCCCC
Q psy1545 421 --IEEMCENLILNQLDLTDIADDLLNPNIDID 450 (454)
Q Consensus 421 --~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 450 (454)
.++.++.+|++++|++|+.+..+ |++++.
T Consensus 413 ~e~i~~~~~ai~~~~t~~~l~~~~~-~hPt~~ 443 (460)
T PRK06292 413 EHLIHLLAWAMQQGLTVEDLLRMPF-YHPTLS 443 (460)
T ss_pred HHHHHHHHHHHHCCCCHHHHhhCcc-CCCCHH
Confidence 57899999999999999988764 444443
No 34
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=9e-48 Score=388.40 Aligned_cols=379 Identities=18% Similarity=0.183 Sum_probs=276.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC---------Ccccccccccccccc--------------------c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS---------GIVKAVTKTVPVTKL--------------------L 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~---------~~~~~~~~~~~~~~~--------------------~ 52 (454)
+||++||||||||++||..++++ |.+|+|||+. ...+.|.++.+.+.. +
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~--G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH--GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC--CCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 38999999999999999999998 9999999963 244455554333210 0
Q ss_pred c---ccch---hh---hHH--------HHHhc-CcEEEcceEEEEeCcccEEEecc-CcEEEecEEEEecCCCCCCCC-C
Q psy1545 53 S---DITV---EE---TDA--------NKFEG-LCTVIVDTVAAIDPRVNCVITEK-QNRIKYKTLCICTGASPRKIW-Y 112 (454)
Q Consensus 53 ~---~~~~---~~---~~~--------~~~~~-~i~~~~~~v~~i~~~~~~v~~~~-g~~i~~d~lviAtG~~p~~~~-~ 112 (454)
. ..++ .+ ... ..+.. +++++.+++.+.+.....+...+ +..++||+||||||++|+.|+ +
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i 162 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDV 162 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence 0 0111 10 111 11122 88889998888765543333212 347999999999999999874 6
Q ss_pred CCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCC
Q psy1545 113 SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190 (454)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~ 190 (454)
+.......+.+++..+.+ .+++++|||+|++|+|+|..|+ |.+||++++. .+++ .+|+++.+.+.+.+.+
T Consensus 163 ~G~~~~~~~~~~~~~~~~---~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~~~l~~--- 234 (499)
T PTZ00052 163 PGAKEYSITSDDIFSLSK---DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVVEYMKE--- 234 (499)
T ss_pred CCccceeecHHHHhhhhc---CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHHHHHHH---
Confidence 621112345555555433 3789999999999999999986 9999999974 5554 3788888887777755
Q ss_pred CChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEe
Q psy1545 191 AKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSA 270 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a 270 (454)
.||++++++.+.+++..++ ...+.+.+|+++++|.|+++
T Consensus 235 --------------------------------------~GV~i~~~~~v~~v~~~~~---~~~v~~~~g~~i~~D~vl~a 273 (499)
T PTZ00052 235 --------------------------------------QGTLFLEGVVPINIEKMDD---KIKVLFSDGTTELFDTVLYA 273 (499)
T ss_pred --------------------------------------cCCEEEcCCeEEEEEEcCC---eEEEEECCCCEEEcCEEEEe
Confidence 8999999999999886542 35577788888999999999
Q ss_pred eccCcCccccc--CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 271 IGVVPNSNIQV--HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 271 ~G~~p~~~~~~--~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+|++||++ ++ +..+++++++|++.+++. ||+.|+|||+|||+... +++++.|.+||+.+|+||++..
T Consensus 274 ~G~~pn~~-~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~---------~~l~~~A~~~g~~aa~ni~g~~ 342 (499)
T PTZ00052 274 TGRKPDIK-GLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGR---------PELTPVAIKAGILLARRLFKQS 342 (499)
T ss_pred eCCCCCcc-ccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCC---------cccHHHHHHHHHHHHHHHhCCC
Confidence 99999998 65 466788888898777777 99999999999998632 3578999999999999998753
Q ss_pred CCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC----CceEEE------------ee-----c--------CCcc
Q psy1545 349 KNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN----DYEILL------------RV-----T--------RGEE 399 (454)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~----~~~~~~------------~~-----~--------~~~~ 399 (454)
.....+..+|..+|+.+ ++++||+++.++... .+.... +. . ...+
T Consensus 343 ~~~~~~~~~p~~ift~p------~ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 416 (499)
T PTZ00052 343 NEFIDYTFIPTTIFTPI------EYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNC 416 (499)
T ss_pred CCcCccccCCeEEecCC------cceeecCCHHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCc
Confidence 22222233455555554 899999998876532 121110 00 0 1468
Q ss_pred EEEEEE-E--CCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 400 YIKLVM-K--DGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 400 ~~k~~~-~--~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
|+|+++ + +++|+|+|++|++ +.++.++.+|++++|+++|.+.+ .||+++
T Consensus 417 ~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~s 471 (499)
T PTZ00052 417 LAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDA 471 (499)
T ss_pred eEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCc
Confidence 999999 3 6999999999988 36789999999999999997765 355443
No 35
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.4e-47 Score=386.64 Aligned_cols=381 Identities=21% Similarity=0.286 Sum_probs=284.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc--------------c---------ccchh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL--------------S---------DITVE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~--------------~---------~~~~~ 58 (454)
.|||+|||||+||++||..|++. |.+|+|||+....+.|.++.+.+... . ..++.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~--G~~v~lie~~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL--GLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE 78 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence 38999999999999999999998 99999999966556555543322100 0 00100
Q ss_pred h------h--------HHHHHhc-CcEEEcceEEEEeCcccEEEeccC-cEEEecEEEEecCCCCCCCCCC-C-ceeeee
Q psy1545 59 E------T--------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQ-NRIKYKTLCICTGASPRKIWYS-P-HVITIR 120 (454)
Q Consensus 59 ~------~--------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g-~~i~~d~lviAtG~~p~~~~~~-~-~~~~~~ 120 (454)
. . ....+.+ +++++.+++.++++....+...++ ..+.||+||||||++|+.|+++ + ....+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~ 158 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVI 158 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEE
Confidence 0 0 0011223 899999999998877766665454 4799999999999999888764 1 111345
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.++...+.. .+++++|||+|.+|+|+|..+. |.+|+++++.+++++. +++++...+.+.+.+
T Consensus 159 ~~~~~~~~~~---~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~----------- 223 (461)
T TIGR01350 159 TSTGALNLKE---VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKK----------- 223 (461)
T ss_pred cchHHhcccc---CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHH-----------
Confidence 6666655443 3799999999999999999986 9999999999998874 677777777766654
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcC
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~ 276 (454)
.||++++++.+.+++.+++ .+.+.+.+| +++++|.+++|+|++|+
T Consensus 224 ------------------------------~gi~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 224 ------------------------------KGVKILTNTKVTAVEKNDD---QVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred ------------------------------cCCEEEeCCEEEEEEEeCC---EEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 8999999999999986542 355666667 57999999999999999
Q ss_pred cc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCccee
Q psy1545 277 SN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355 (454)
Q Consensus 277 ~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 355 (454)
.+ .+++..++.++.+|+|.||+++||+.|+|||+|||+.. +++++.|..||+.+|+||.+.........
T Consensus 271 ~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~----------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~ 340 (461)
T TIGR01350 271 TEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGG----------PMLAHVASHEGIVAAENIAGKEPAPIDYD 340 (461)
T ss_pred CCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCC----------cccHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 86 13566678888889999999999999999999999874 35788999999999999997532111111
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCCceE--EEe----------ecCCccEEEEEE--ECCeEEEEEEEcCCc-
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEI--LLR----------VTRGEEYIKLVM--KDGRMQGAVLIGETE- 420 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~--~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~~- 420 (454)
..|. ..+++.+++.+|+++.++...+++. ... .....+|+|+++ ++++|+|+|++|+..
T Consensus 341 ~~~~------~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~ 414 (461)
T TIGR01350 341 AVPS------CIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHAT 414 (461)
T ss_pred CCCe------EEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHH
Confidence 2222 3345669999999987765433321 111 123568999999 479999999999873
Q ss_pred -hHHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 421 -IEEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 421 -~~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
.++.++.+|++++|++|+.+.+ .+|+++
T Consensus 415 e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~ 444 (461)
T TIGR01350 415 ELISEAVLAMELELTVEELAKTIHPHPTLS 444 (461)
T ss_pred HHHHHHHHHHHCCCCHHHHhcCcccCCCHH
Confidence 5789999999999999998865 366543
No 36
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=7.8e-47 Score=399.29 Aligned_cols=377 Identities=22% Similarity=0.290 Sum_probs=305.0
Q ss_pred EEEECCCHHHHHHHHHHhhcC-CCCeEEEECCCCcccccccccccccccc----ccchhhhHHHHHhc-CcEEEcc-eEE
Q psy1545 5 YLIIGGGIAGVSCVEGLAFLH-PGESIGLVTPSGIVKAVTKTVPVTKLLS----DITVEETDANKFEG-LCTVIVD-TVA 77 (454)
Q Consensus 5 vvIIGgG~aGl~aA~~l~~~~-~g~~v~lie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~i~~~~~-~v~ 77 (454)
|||||||+||+++|..|+++. ++.+|+||++++++.+ +++.++..+. ..++.....+++.+ +++++.+ +|+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y--~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~ 78 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNY--NRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVI 78 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCc--ccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEE
Confidence 689999999999999999875 4679999999998753 3332322221 11222233455666 9999876 899
Q ss_pred EEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHH
Q psy1545 78 AIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHE 153 (454)
Q Consensus 78 ~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~ 153 (454)
.++++++.|.+.+|.++.||+||||||++|+.|++| ++++.+++.+++..+.+....+++++|||+|++|+|+|..
T Consensus 79 ~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~ 158 (785)
T TIGR02374 79 QIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVG 158 (785)
T ss_pred EEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 999999999998888999999999999999999887 4678888889998888877788999999999999999999
Q ss_pred hc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCce
Q psy1545 154 LS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231 (454)
Q Consensus 154 l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv 231 (454)
|. |.+|+++++.++++++.+++.....+.+.+.+ .||
T Consensus 159 L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~-----------------------------------------~GV 197 (785)
T TIGR02374 159 LQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQ-----------------------------------------KGL 197 (785)
T ss_pred HHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHH-----------------------------------------cCC
Confidence 97 99999999999998877888888888777755 899
Q ss_pred EEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecC
Q psy1545 232 TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311 (454)
Q Consensus 232 ~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~G 311 (454)
++++++.++++..++ ....+.+++|+++++|.||+++|++|+.+ ++...+++++ |+|.||++|||+.|||||+|
T Consensus 198 ~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~-la~~~gl~~~--ggI~Vd~~~~Ts~p~IyA~G 271 (785)
T TIGR02374 198 TFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIRPNDE-LAVSAGIKVN--RGIIVNDSMQTSDPDIYAVG 271 (785)
T ss_pred EEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCCcCcH-HHHhcCCccC--CCEEECCCcccCCCCEEEee
Confidence 999999999998654 24568889999999999999999999998 8877788764 77999999999999999999
Q ss_pred cccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEE
Q psy1545 312 DVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEIL 391 (454)
Q Consensus 312 D~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~ 391 (454)
||+..+.. ...++..|..||+++|.||++... ..|+...++...+.+|++++++|.+...... ....
T Consensus 272 D~a~~~~~------~~gl~~~a~~qa~vaA~ni~g~~~-----~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~--~~~~ 338 (785)
T TIGR02374 272 ECAEHNGR------VYGLVAPLYEQAKVLADHICGVEC-----EEYEGSDLSAKLKLLGVDVWSAGDAQETERT--TSIK 338 (785)
T ss_pred ecceeCCc------ccccHHHHHHHHHHHHHHhcCCCC-----cCCCCCccceEEEECCcceEecccCCCCCCc--EEEE
Confidence 99975421 234678899999999999997421 2355556667788999999999986643221 1222
Q ss_pred EeecCCccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhcc
Q psy1545 392 LRVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLL 443 (454)
Q Consensus 392 ~~~~~~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~ 443 (454)
+.+.....|.|+++++++|+|++++|.......+..+|.++..+++....|+
T Consensus 339 ~~d~~~~~y~kl~~~~~rLlGavlvgd~~~~~~L~~li~~~~~l~~~~~ll~ 390 (785)
T TIGR02374 339 IYDEQKGIYKKLVLSDDKLLGAVLFGDTSDYGRLLDMVLKQADISEDPAIIK 390 (785)
T ss_pred EEcCCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHcCCCCCcChhhhc
Confidence 2233345699999999999999999999888999999999998888763333
No 37
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=2.3e-46 Score=367.67 Aligned_cols=354 Identities=19% Similarity=0.259 Sum_probs=275.5
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccc----ccchhhhHH-HHHhc-CcEEEc-
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLS----DITVEETDA-NKFEG-LCTVIV- 73 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~-~i~~~~- 73 (454)
|++++||||||+||+++|..|++.+++.+|+||++++...+ +.+.++..+. ..++..... +.+.+ +++++.
T Consensus 1 m~~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 78 (377)
T PRK04965 1 MSNGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEY--NKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPH 78 (377)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCc--CcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECC
Confidence 77899999999999999999999888899999999886532 2232222111 112222122 33444 999875
Q ss_pred ceEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHH
Q psy1545 74 DTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELV 151 (454)
Q Consensus 74 ~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a 151 (454)
.+|+.++++.+.+.+ ++..+.||+||||||++|+.|+++ +.++.+.+..++..+...+..+++++|||+|++|+|+|
T Consensus 79 ~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A 157 (377)
T PRK04965 79 TWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELA 157 (377)
T ss_pred CEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHH
Confidence 589999998888887 567899999999999999999888 34667777777877777777789999999999999999
Q ss_pred HHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCC
Q psy1545 152 HELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDT 229 (454)
Q Consensus 152 ~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 229 (454)
..|. +.+|+++++.++++++.++++....+.+.+.+ .
T Consensus 158 ~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~-----------------------------------------~ 196 (377)
T PRK04965 158 MDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTE-----------------------------------------M 196 (377)
T ss_pred HHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHh-----------------------------------------C
Confidence 9987 89999999999988776677777777777654 8
Q ss_pred ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceee
Q psy1545 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYA 309 (454)
Q Consensus 230 gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya 309 (454)
||++++++.+.++..+++ .+.+.+++|+++++|.||+|+|.+|+.+ +++..|+.++ + +|.||+++||+.|||||
T Consensus 197 gV~i~~~~~v~~i~~~~~---~~~v~~~~g~~i~~D~vI~a~G~~p~~~-l~~~~gl~~~-~-gi~vd~~l~ts~~~VyA 270 (377)
T PRK04965 197 GVHLLLKSQLQGLEKTDS---GIRATLDSGRSIEVDAVIAAAGLRPNTA-LARRAGLAVN-R-GIVVDSYLQTSAPDIYA 270 (377)
T ss_pred CCEEEECCeEEEEEccCC---EEEEEEcCCcEEECCEEEECcCCCcchH-HHHHCCCCcC-C-CEEECCCcccCCCCEEE
Confidence 999999999999987642 4567888999999999999999999998 8777788764 3 49999999999999999
Q ss_pred cCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce
Q psy1545 310 AGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE 389 (454)
Q Consensus 310 ~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~ 389 (454)
+|||+..... ..+.+..|..||+++|+||++... .|.........+.+++++.++|...... ..|
T Consensus 271 ~GD~a~~~~~------~~~~~~~a~~~g~~~a~n~~g~~~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~- 335 (377)
T PRK04965 271 LGDCAEINGQ------VLPFLQPIQLSAMALAKNLLGQNT------PLKLPAMLVKVKTPELPLQLAGETQRQD--LRW- 335 (377)
T ss_pred eeecEeECCc------eeehHHHHHHHHHHHHHHhcCCCc------ccccCCccEEEecCceeeEECCCCCCCC--ceE-
Confidence 9999975311 234677799999999999998532 2333333344578899999999865322 122
Q ss_pred EEEeecCCccEEEEEEECCeEEEEEEEcCCc
Q psy1545 390 ILLRVTRGEEYIKLVMKDGRMQGAVLIGETE 420 (454)
Q Consensus 390 ~~~~~~~~~~~~k~~~~~~~i~G~~~~g~~~ 420 (454)
.+.+.....|.|+++++|+|+|+.++|+..
T Consensus 336 -~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 336 -QINAESQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred -EEEeCCCCeEEEEEccCCcEEEEEEEChhH
Confidence 222333345778888999999999999974
No 38
>KOG0405|consensus
Probab=100.00 E-value=3.1e-47 Score=342.00 Aligned_cols=371 Identities=20% Similarity=0.301 Sum_probs=301.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC-Cccccccccccccccc------------------------cccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS-GIVKAVTKTVPVTKLL------------------------SDIT 56 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~-~~~~~~~~~~~~~~~~------------------------~~~~ 56 (454)
.||..|||||.+|+++|++.++. |.++.|+|.. ...+.|.++.+.++.. ..++
T Consensus 20 ~fDylvIGgGSGGvasARrAa~~--GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 20 DFDYLVIGGGSGGVASARRAASH--GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred ccceEEEcCCcchhHHhHHHHhc--CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 48999999999999999999998 9999999998 6667777765544321 1122
Q ss_pred hhh------h--------HHHHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCCCCCCCCCCCceeee
Q psy1545 57 VEE------T--------DANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGASPRKIWYSPHVITI 119 (454)
Q Consensus 57 ~~~------~--------~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~~~~~~~ 119 (454)
|.. . +.+.+.+ +++++.++..++++.+..|...++. .+++++++||||++|..|.+|..-+.+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gi 177 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGI 177 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhcc
Confidence 211 1 1112233 8999999999999999888887874 478999999999999999998444443
Q ss_pred eccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhh
Q psy1545 120 RDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 120 ~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~ 197 (454)
+++.++.|.+. |+|++|+|+|++|+|+|..++ |++++++.|.+.++.. ||+.+...+.+.+..
T Consensus 178 -dSDgff~Lee~---Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~~---------- 242 (478)
T KOG0405|consen 178 -DSDGFFDLEEQ---PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLEG---------- 242 (478)
T ss_pred -ccccccchhhc---CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhhh----------
Confidence 66778888775 999999999999999999997 9999999999999986 799999998888855
Q ss_pred hhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 198 KRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
+||+++++++++++.+..+ ....+..++|+...+|.++||+|+.|++
T Consensus 243 -------------------------------~ginvh~~s~~~~v~K~~~--g~~~~i~~~~~i~~vd~llwAiGR~Pnt 289 (478)
T KOG0405|consen 243 -------------------------------RGINVHKNSSVTKVIKTDD--GLELVITSHGTIEDVDTLLWAIGRKPNT 289 (478)
T ss_pred -------------------------------cceeecccccceeeeecCC--CceEEEEeccccccccEEEEEecCCCCc
Confidence 8999999999999988764 2455666777666799999999999998
Q ss_pred c-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC-CCCCccee
Q psy1545 278 N-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA-VKNEPVIQ 355 (454)
Q Consensus 278 ~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~-~~~~~~~~ 355 (454)
. +-++..|+.++.+|.|.||+|.+||+|+||++||+++. ..+.+.|++.|+..|+.+.+. ...+..+.
T Consensus 290 k~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~ 359 (478)
T KOG0405|consen 290 KGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYE 359 (478)
T ss_pred ccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccc
Confidence 7 34566789999999999999999999999999999874 357789999999999999984 23345566
Q ss_pred ccceeeeeeeeeecCeEEEEeecccCCcCCCC----ceEEE----------eecCCccEEEEEE--ECCeEEEEEEEcCC
Q psy1545 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLEND----YEILL----------RVTRGEEYIKLVM--KDGRMQGAVLIGET 419 (454)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~----~~~~~----------~~~~~~~~~k~~~--~~~~i~G~~~~g~~ 419 (454)
.+|..+|++| ++.++|+++.++..+. +.++- ...+..-++|+++ ++.+++|+|++|+.
T Consensus 360 nVp~vVFshP------~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~ 433 (478)
T KOG0405|consen 360 NVPCVVFSHP------PIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDD 433 (478)
T ss_pred cCceEEEecC------CcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCC
Confidence 7888999998 8999999998875322 22221 1124556999999 79999999999998
Q ss_pred c--hHHHHHHHHhcCCCcchh
Q psy1545 420 E--IEEMCENLILNQLDLTDI 438 (454)
Q Consensus 420 ~--~~~~~~~~i~~~~~~~~~ 438 (454)
. ..+-+..+++.|.|-.|.
T Consensus 434 s~EilQGf~VAvKmGaTKadF 454 (478)
T KOG0405|consen 434 SAEILQGFAVAVKMGATKADF 454 (478)
T ss_pred cHHHHhhhhhheecCcchhhh
Confidence 4 578999999999998886
No 39
>KOG1335|consensus
Probab=100.00 E-value=1.7e-46 Score=341.47 Aligned_cols=385 Identities=22% Similarity=0.279 Sum_probs=300.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc-ccccccccccc-c------------------------ccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK-AVTKTVPVTKL-L------------------------SDI 55 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~-~~~~~~~~~~~-~------------------------~~~ 55 (454)
.+|++|||+||+|..||..++++ |.+.+.+|++..++ .|.+..+.+.. + ..+
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQl--GlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~ 116 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQL--GLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSL 116 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHh--cceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceec
Confidence 38999999999999999999999 99999999966544 44444322110 0 001
Q ss_pred chhh--------------hHHHHHhc-CcEEEcceEEEEeCcccEEEeccCc--EEEecEEEEecCC-CCCCCCCCCcee
Q psy1545 56 TVEE--------------TDANKFEG-LCTVIVDTVAAIDPRVNCVITEKQN--RIKYKTLCICTGA-SPRKIWYSPHVI 117 (454)
Q Consensus 56 ~~~~--------------~~~~~~~~-~i~~~~~~v~~i~~~~~~v~~~~g~--~i~~d~lviAtG~-~p~~~~~~~~~~ 117 (454)
++.. -....|++ +++++.+...+++|+...+.-.||+ .+.+++++||||+ .+..|.+.-+--
T Consensus 117 dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDek 196 (506)
T KOG1335|consen 117 DLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEK 196 (506)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCc
Confidence 1100 11122334 8999999999999998777766664 7899999999999 455555551112
Q ss_pred eeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhh
Q psy1545 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~ 195 (454)
.+.++..++.|.+. |++++|+|+|.+|+|++..+. |++||+++-.+.+.+. +|++++..+++.|.+
T Consensus 197 kIVSStgALsL~~v---Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~k-------- 264 (506)
T KOG1335|consen 197 KIVSSTGALSLKEV---PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQK-------- 264 (506)
T ss_pred eEEecCCccchhhC---cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHh--------
Confidence 34567778888765 999999999999999999875 9999999999999986 899999999999866
Q ss_pred hhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEe
Q psy1545 196 IFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSA 270 (454)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a 270 (454)
+|+++++++.|..++.++++ .+.+++.+ + ++++||.++++
T Consensus 265 ---------------------------------QgikF~l~tkv~~a~~~~dg--~v~i~ve~ak~~k~~tle~DvlLVs 309 (506)
T KOG1335|consen 265 ---------------------------------QGIKFKLGTKVTSATRNGDG--PVEIEVENAKTGKKETLECDVLLVS 309 (506)
T ss_pred ---------------------------------cCceeEeccEEEEeeccCCC--ceEEEEEecCCCceeEEEeeEEEEE
Confidence 99999999999999987752 45555543 2 67999999999
Q ss_pred eccCcCcc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 271 IGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 271 ~G~~p~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
+|++|-+. +-++..|+..|..|++.||..++|.+|+||++||++..| +++|.|..||..+.+.|.+..
T Consensus 310 iGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gp----------MLAhkAeeegI~~VE~i~g~~- 378 (506)
T KOG1335|consen 310 IGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGP----------MLAHKAEEEGIAAVEGIAGGH- 378 (506)
T ss_pred ccCcccccCCChhhcccccccccceeccccccccCCceEEecccCCcc----------hhhhhhhhhchhheeeecccC-
Confidence 99999887 334555788899999999999999999999999999865 799999999999999998753
Q ss_pred CCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE---------e---ecCCccEEEEEE--ECCeEEEEEE
Q psy1545 350 NEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL---------R---VTRGEEYIKLVM--KDGRMQGAVL 415 (454)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~---------~---~~~~~~~~k~~~--~~~~i~G~~~ 415 (454)
+...+.-+|..+||+| ++++||+++.+.+...+...+ | ....++|+|+++ ++++|||+|+
T Consensus 379 ~hv~ynciP~v~ythP------EvawVG~TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHi 452 (506)
T KOG1335|consen 379 GHVDYNCIPSVVYTHP------EVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHI 452 (506)
T ss_pred cccccCCCCceeeccc------ceeeeccchhhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEE
Confidence 1222333677889988 899999999876543332211 1 223578999999 6999999999
Q ss_pred EcCCc--hHHHHHHHHhcCCCcchhhhhccCCCCCCCCCC
Q psy1545 416 IGETE--IEEMCENLILNQLDLTDIADDLLNPNIDIDDYF 453 (454)
Q Consensus 416 ~g~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 453 (454)
+|+.+ .+....++|.-|.+.+|+ .+.-|++.++++-|
T Consensus 453 igp~AgEli~EA~lAieyGasaeDv-arvchaHPTlSEa~ 491 (506)
T KOG1335|consen 453 IGPNAGELIHEASLAIEYGASAEDV-ARVCHAHPTLSEAF 491 (506)
T ss_pred ecCCHHHHHHHHHHHHHhCccHHHH-hhccCCCCcHHHHH
Confidence 99994 678889999999999998 55666677666544
No 40
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=4e-45 Score=365.00 Aligned_cols=380 Identities=22% Similarity=0.299 Sum_probs=286.7
Q ss_pred HHHHHHhhcCCCCeEEEECCCCcccccc-ccccccccc-c-ccchhhhHHHHH-hc-CcEEE-cceEEEEeCcccEEEec
Q psy1545 16 SCVEGLAFLHPGESIGLVTPSGIVKAVT-KTVPVTKLL-S-DITVEETDANKF-EG-LCTVI-VDTVAAIDPRVNCVITE 89 (454)
Q Consensus 16 ~aA~~l~~~~~g~~v~lie~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~-~~-~i~~~-~~~v~~i~~~~~~v~~~ 89 (454)
+||..|++++++.+|+|||+++.+.+.. ..+.+.... . ..+......+.+ .+ +++++ .++|+.+++.++.+.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~ 80 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR 80 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence 4789999987788999999999765432 222222111 1 111111112333 45 99986 56999999988888765
Q ss_pred c---CcEEE--ecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHh--hcCCeEEEEcCchhHHHHHHHhc--C
Q psy1545 90 K---QNRIK--YKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKL--KSAKKIVVIGNGGIATELVHELS--N 156 (454)
Q Consensus 90 ~---g~~i~--~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~--~~~~~vvVvG~G~~g~e~a~~l~--g 156 (454)
+ ++.+. ||+||||||++|+.|+++ ++++...+..++..+++.+ ..+++++|||+|++|+|+|..++ |
T Consensus 81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g 160 (427)
T TIGR03385 81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERG 160 (427)
T ss_pred ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCC
Confidence 3 35677 999999999999988887 3466667777777776665 35799999999999999999886 8
Q ss_pred CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeC
Q psy1545 157 VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYS 236 (454)
Q Consensus 157 ~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~ 236 (454)
.+|++++++++++...+++++...+.+.+.+ .||+++++
T Consensus 161 ~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~-----------------------------------------~gV~v~~~ 199 (427)
T TIGR03385 161 KNVTLIHRSERILNKLFDEEMNQIVEEELKK-----------------------------------------HEINLRLN 199 (427)
T ss_pred CcEEEEECCcccCccccCHHHHHHHHHHHHH-----------------------------------------cCCEEEeC
Confidence 9999999998875444666666666666644 89999999
Q ss_pred ceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCccccc
Q psy1545 237 CEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTP 316 (454)
Q Consensus 237 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~ 316 (454)
+.+.++..++ .+ +.+.+|+++++|.+++|+|++|+.+ +++..++.++++|+|.||+++||+.|+|||+|||+..
T Consensus 200 ~~v~~i~~~~----~~-v~~~~g~~i~~D~vi~a~G~~p~~~-~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~ 273 (427)
T TIGR03385 200 EEVDSIEGEE----RV-KVFTSGGVYQADMVILATGIKPNSE-LAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAES 273 (427)
T ss_pred CEEEEEecCC----CE-EEEcCCCEEEeCEEEECCCccCCHH-HHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEe
Confidence 9999998654 22 5667888999999999999999998 8888888888889999999999999999999999986
Q ss_pred CCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCC--CceEEE-e
Q psy1545 317 SWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLEN--DYEILL-R 393 (454)
Q Consensus 317 ~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~--~~~~~~-~ 393 (454)
+....+.+...++++.|.+||+++|+||++... .++.......+.+++++++++|+++.+++.. ++.... .
T Consensus 274 ~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~~------~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~ 347 (427)
T TIGR03385 274 HNIITKKPAWVPLAWGANKMGRIAGENIAGNDI------EFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVK 347 (427)
T ss_pred eeccCCCceeeechHHHHHHHHHHHHHhcCCCC------CCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEe
Confidence 543333333457899999999999999987521 2322223334667888999999998765432 232211 1
Q ss_pred --------ecCCccEEEEEE--ECCeEEEEEEEcCC---chHHHHHHHHhcCCCcchhhhhc--cCCCCC
Q psy1545 394 --------VTRGEEYIKLVM--KDGRMQGAVLIGET---EIEEMCENLILNQLDLTDIADDL--LNPNID 448 (454)
Q Consensus 394 --------~~~~~~~~k~~~--~~~~i~G~~~~g~~---~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 448 (454)
.....+|+|+++ ++++|+|+|++|+. +.++.++.+|++++|++++.+.. ++|.|+
T Consensus 348 ~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~ 417 (427)
T TIGR03385 348 AKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYS 417 (427)
T ss_pred cCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCC
Confidence 112457999999 47999999999988 34679999999999999997555 677776
No 41
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=1.1e-44 Score=356.43 Aligned_cols=384 Identities=25% Similarity=0.335 Sum_probs=323.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCccccccccccccccccc----cchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIVKAVTKTVPVTKLLSD----ITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~i~~~~~- 74 (454)
+.++||||.|++|..+..++.+..|+ .+|+++..+++.. +++..++..++. .++.....++|.+ +++++.+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n--Y~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~ 80 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN--YNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGE 80 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc--ccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCC
Confidence 57899999999999999999996543 5899999998875 466655555543 2233344567777 9999866
Q ss_pred eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHH
Q psy1545 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL 150 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~ 150 (454)
+|+++|++++.|+++.|.++.||+|++||||.|+.+|+| +.++.+++.+|+..+...-+..++.+|||||..|+|+
T Consensus 81 ~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEa 160 (793)
T COG1251 81 KVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEA 160 (793)
T ss_pred eeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHH
Confidence 999999999999999999999999999999999999998 6889999999999888776667788999999999999
Q ss_pred HHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccC
Q psy1545 151 VHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228 (454)
Q Consensus 151 a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 228 (454)
|..|. |.+++|++..+.++.+.+|+....+++..+.+
T Consensus 161 A~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~----------------------------------------- 199 (793)
T COG1251 161 ARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLED----------------------------------------- 199 (793)
T ss_pred HHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHh-----------------------------------------
Confidence 99997 99999999999999999999999999888866
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCcee
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVY 308 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iy 308 (454)
+|++++++...+++...+ ....++++||+.+++|.|++|+|++||.. +....|+.+++ +|.||++|||+.|+||
T Consensus 200 ~Gi~~~l~~~t~ei~g~~---~~~~vr~~DG~~i~ad~VV~a~GIrPn~e-la~~aGlavnr--GIvvnd~mqTsdpdIY 273 (793)
T COG1251 200 LGIKVLLEKNTEEIVGED---KVEGVRFADGTEIPADLVVMAVGIRPNDE-LAKEAGLAVNR--GIVVNDYMQTSDPDIY 273 (793)
T ss_pred hcceeecccchhhhhcCc---ceeeEeecCCCcccceeEEEecccccccH-hHHhcCcCcCC--CeeecccccccCCCee
Confidence 999999999888888743 47789999999999999999999999999 99999999854 7999999999999999
Q ss_pred ecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCc
Q psy1545 309 AAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY 388 (454)
Q Consensus 309 a~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~ 388 (454)
|+|+|+...- ..+.+...+..||+++|+++++...+ .|...+.+...|..|+++.+.|.........
T Consensus 274 AvGEcae~~g------~~yGLVaP~yeq~~v~a~hl~~~~~~-----~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~-- 340 (793)
T COG1251 274 AVGECAEHRG------KVYGLVAPLYEQAKVLADHLCGGEAE-----AYEGSVTSTKLKVSGVDVFSAGDFQETEGAE-- 340 (793)
T ss_pred ehhhHHHhcC------ccceehhHHHHHHHHHHHHhccCccc-----ccccccchhhhcccccceeeccchhhcCCCc--
Confidence 9999998642 23567778999999999999987543 2334444445688899999999987332222
Q ss_pred eEEEeecCCccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhccCCCC
Q psy1545 389 EILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNI 447 (454)
Q Consensus 389 ~~~~~~~~~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 447 (454)
.+++++....-|-|+++++++|+|+.++|+..+-.++..+|.++.+++++.+.|+-|.-
T Consensus 341 ~iv~~D~~~~iYKrlvL~dd~IvgavL~GDt~d~~~l~~li~~~~~~se~r~~li~~~~ 399 (793)
T COG1251 341 SIVFRDEQRGIYKKLVLKDDKIVGAVLYGDTSDGGWLLDLILKGADISEIRDTLILPQG 399 (793)
T ss_pred eEEEecccccceeEEEEeCCeEEEEEEEeecccchHHHHHHhcCCCccccchhhccccc
Confidence 23344433456999999999999999999999999999999999999999888876654
No 42
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=4.6e-43 Score=334.40 Aligned_cols=297 Identities=22% Similarity=0.282 Sum_probs=248.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccc-ccccchhhhHHHHHhc--CcEEEcceEE
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL-LSDITVEETDANKFEG--LCTVIVDTVA 77 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~i~~~~~~v~ 77 (454)
|+++|||||||++|+.+|..|.+..++.+|+|||+.+++.+.......... ++...+.......+.+ +++|+.++|+
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 367899999999999999999997225899999999988655444433222 2222333334444554 5999999999
Q ss_pred EEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHHhh--------cCC-----eEEEE
Q psy1545 78 AIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEKLK--------SAK-----KIVVI 141 (454)
Q Consensus 78 ~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~~~--------~~~-----~vvVv 141 (454)
.||.+.++|+++++..+.||+||+|+|+.+..+.++ ++.+.+.+.+|+.+++..+. ..+ +++|+
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~Iv 161 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIV 161 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEE
Confidence 999999999998878899999999999999999888 78899999999988877653 222 69999
Q ss_pred cCchhHHHHHHHhc-------C--------CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCC
Q psy1545 142 GNGGIATELVHELS-------N--------VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGG 206 (454)
Q Consensus 142 G~G~~g~e~a~~l~-------g--------~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (454)
|||++|+|+|.+|. . .+|+++++.+++++. +++++....++.|.+
T Consensus 162 GgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~------------------- 221 (405)
T COG1252 162 GGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-FPPKLSKYAERALEK------------------- 221 (405)
T ss_pred CCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-CCHHHHHHHHHHHHH-------------------
Confidence 99999999999884 1 389999999999995 799999988888866
Q ss_pred CCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc-EEecCEEEEeeccCcCcccccCC-C
Q psy1545 207 EKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH-THACDIVVSAIGVVPNSNIQVHG-T 284 (454)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~-~~~~D~vi~a~G~~p~~~~~~~~-~ 284 (454)
+||++++++.|++++++. |.+++|. +++++.+|||+|.+++. +++. .
T Consensus 222 ----------------------~GV~v~l~~~Vt~v~~~~-------v~~~~g~~~I~~~tvvWaaGv~a~~--~~~~l~ 270 (405)
T COG1252 222 ----------------------LGVEVLLGTPVTEVTPDG-------VTLKDGEEEIPADTVVWAAGVRASP--LLKDLS 270 (405)
T ss_pred ----------------------CCCEEEcCCceEEECCCc-------EEEccCCeeEecCEEEEcCCCcCCh--hhhhcC
Confidence 999999999999999876 7888887 59999999999999987 6676 5
Q ss_pred CceecCCCceEeccccc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 285 PFELAPDCGIGVNELMQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 285 ~l~~~~~g~i~vd~~~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
+++.|..|++.||+++| +++|+|||+|||+....+ ...++.++.|.+||.++|+||.+.+.|++
T Consensus 271 ~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~ 335 (405)
T COG1252 271 GLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLKGKP 335 (405)
T ss_pred hhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhcCCC
Confidence 78888889999999999 789999999999987643 22467899999999999999999988854
No 43
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=335.01 Aligned_cols=293 Identities=19% Similarity=0.268 Sum_probs=232.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccccc-chhhhHHHHHhc-CcEEEcceEEEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDI-TVEETDANKFEG-LCTVIVDTVAAI 79 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~i~~~~~~v~~i 79 (454)
+.+|||||||+||+.+|..|.+. +.+|+|||+++++.+....+......... .........+.. +++++.++|+.|
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~--~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I 87 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK--KYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV 87 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC--CCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence 36899999999999999999764 78999999998875433322221111111 122222333444 899999999999
Q ss_pred eCcccEEEe----------ccCcEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHHhh-------------
Q psy1545 80 DPRVNCVIT----------EKQNRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEKLK------------- 133 (454)
Q Consensus 80 ~~~~~~v~~----------~~g~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~~~------------- 133 (454)
|++++.|.+ +++.++.||+||||||++|..+++| +.++.+++.+++.++++.+.
T Consensus 88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~ 167 (424)
T PTZ00318 88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV 167 (424)
T ss_pred EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence 999998887 4566899999999999999888887 55667777787777655432
Q ss_pred ----cCCeEEEEcCchhHHHHHHHhc----------------CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCCh
Q psy1545 134 ----SAKKIVVIGNGGIATELVHELS----------------NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193 (454)
Q Consensus 134 ----~~~~vvVvG~G~~g~e~a~~l~----------------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~ 193 (454)
..++++|||+|++|+|+|..+. +.+|+++++++++++. +++++.+.+.+.+.+
T Consensus 168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~-~~~~~~~~~~~~L~~------ 240 (424)
T PTZ00318 168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS-FDQALRKYGQRRLRR------ 240 (424)
T ss_pred HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-CCHHHHHHHHHHHHH------
Confidence 1248999999999999998874 4789999999998874 677777777777755
Q ss_pred hhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
+||++++++.|.++..+. +.+++|+++++|.+++++|.
T Consensus 241 -----------------------------------~gV~v~~~~~v~~v~~~~-------v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 241 -----------------------------------LGVDIRTKTAVKEVLDKE-------VVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred -----------------------------------CCCEEEeCCeEEEEeCCE-------EEECCCCEEEccEEEEccCC
Confidence 899999999999997643 67889999999999999999
Q ss_pred CcCcccccCCCCceecCCCceEeccccc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 274 VPNSNIQVHGTPFELAPDCGIGVNELMQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 274 ~p~~~~~~~~~~l~~~~~g~i~vd~~~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
+|+. +++..+++++++|+|.||++|| |++|||||+|||+..+.. ..+++++.|.+||+++|+||.+.+.+++
T Consensus 279 ~~~~--~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l~g~~ 351 (424)
T PTZ00318 279 GPGP--LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNELKGKP 351 (424)
T ss_pred CCcc--hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHhcCCC
Confidence 9984 7777788888889999999999 799999999999985321 1246788999999999999998887754
No 44
>KOG1336|consensus
Probab=100.00 E-value=2.7e-40 Score=312.08 Aligned_cols=376 Identities=23% Similarity=0.317 Sum_probs=301.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccc--ccchhhhHHHHHhc-CcEEEcc-eEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLS--DITVEETDANKFEG-LCTVIVD-TVAA 78 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~i~~~~~-~v~~ 78 (454)
.+++|||||++|..|+..+++.++..+++++.++.+++ +.++.++..+. ..++..+..++|+. +|+++.+ .|+.
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~p--ydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~ 152 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLP--YDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVK 152 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCc--ccchhcccceeeccccccccChhhHhhcCceEEEcceeEE
Confidence 46999999999999999999998888999999887775 34444444332 23455556678888 9999855 9999
Q ss_pred EeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHh
Q psy1545 79 IDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL 154 (454)
Q Consensus 79 i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l 154 (454)
+|...+++.+.+|+.+.|++|+||||+.|+.|++| +++..++..+++..+...+...++++++|+|++|+|+|..+
T Consensus 153 ~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 153 ADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred eeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence 99999999999999999999999999999999888 78888999999998888888888999999999999999999
Q ss_pred c--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceE
Q psy1545 155 S--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKIT 232 (454)
Q Consensus 155 ~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~ 232 (454)
. +.+||++++.++.+++++.+++.+.+..++++ .||+
T Consensus 233 ~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~-----------------------------------------kgVk 271 (478)
T KOG1336|consen 233 VSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYEN-----------------------------------------KGVK 271 (478)
T ss_pred HhcCceEEEEccCccchhhhhhHHHHHHHHHHHHh-----------------------------------------cCeE
Confidence 7 88999999999999998999999999888866 9999
Q ss_pred EEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCc
Q psy1545 233 IEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD 312 (454)
++.++.+.+++.+.+ +....|.+.+|+++++|+|++.+|.+|++. +++. +..++++|+|.||+.|||++|||||+||
T Consensus 272 ~~~~t~~s~l~~~~~-Gev~~V~l~dg~~l~adlvv~GiG~~p~t~-~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGD 348 (478)
T KOG1336|consen 272 FYLGTVVSSLEGNSD-GEVSEVKLKDGKTLEADLVVVGIGIKPNTS-FLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGD 348 (478)
T ss_pred EEEecceeecccCCC-CcEEEEEeccCCEeccCeEEEeeccccccc-cccc-cceecccCCEeehhceeeccCCcccccc
Confidence 999999999998775 567889999999999999999999999999 8876 7778899999999999999999999999
Q ss_pred ccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCceEEE
Q psy1545 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILL 392 (454)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~ 392 (454)
|+..+.+.-.......++..|+.+|+.|...+.........+.+|. ++..|+......|.... +.++
T Consensus 349 va~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~~~~lPyf------~t~~f~~~~~~~G~g~~-------~~v~ 415 (478)
T KOG1336|consen 349 VATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDAYDYLPYF------YTRFFSLSWRFAGDGVG-------DVVL 415 (478)
T ss_pred eeecccccccccccchHHHHHHHHHHhhhhhhhccCcccccccchH------HHHHhhhhccccCcCcc-------ceee
Confidence 9998877655444467889999999976666554322221122222 22222222222222210 1111
Q ss_pred e-ecCCccEEEEEEECCeEEEEEEEcCC-chHHHHHHHHhcCCCcchh
Q psy1545 393 R-VTRGEEYIKLVMKDGRMQGAVLIGET-EIEEMCENLILNQLDLTDI 438 (454)
Q Consensus 393 ~-~~~~~~~~k~~~~~~~i~G~~~~g~~-~~~~~~~~~i~~~~~~~~~ 438 (454)
. ......|+..+++ +..+++.+-|.. +..+.++.++++|..++-+
T Consensus 416 ~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~ 462 (478)
T KOG1336|consen 416 FGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSL 462 (478)
T ss_pred ecccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhh
Confidence 1 1122347887789 888888887766 5679999999999998874
No 45
>KOG4716|consensus
Probab=100.00 E-value=4.3e-41 Score=301.33 Aligned_cols=381 Identities=20% Similarity=0.252 Sum_probs=284.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECC---CCc------ccccccccccccccc-------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP---SGI------VKAVTKTVPVTKLLS------------------- 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~---~~~------~~~~~~~~~~~~~~~------------------- 53 (454)
+||++|||||.+||+||++++.+ |.+|.++|- .|. .+.|.|..+.++.+.
T Consensus 19 dyDLIviGgGSgGLacaKeAa~~--G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 19 DYDLIVIGGGSGGLACAKEAADL--GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred CccEEEEcCCcchhhHHHHHHhc--CCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 48999999999999999999999 999999874 332 123333333322210
Q ss_pred --c----cchh---hhHHHHH-----------hc-CcEEEcceEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCCC
Q psy1545 54 --D----ITVE---ETDANKF-----------EG-LCTVIVDTVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 54 --~----~~~~---~~~~~~~-----------~~-~i~~~~~~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~~ 110 (454)
+ .+|. +...+.+ ++ .+.+++....++++++...+..+| +.+.++++|||||.+|+.|
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp 176 (503)
T KOG4716|consen 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYP 176 (503)
T ss_pred CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCC
Confidence 0 0110 0111111 11 455566667777777655554455 3689999999999999999
Q ss_pred CCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhcc
Q psy1545 111 WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188 (454)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~ 188 (454)
.+|+......+++|+..+.. .|.+.+|||+|++++|+|..|. |.+||+..|+--+. -||.++++.+.+.+.+
T Consensus 177 ~IpG~~Ey~ITSDDlFsl~~---~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~Lr--GFDqdmae~v~~~m~~- 250 (503)
T KOG4716|consen 177 DIPGAKEYGITSDDLFSLPY---EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLR--GFDQDMAELVAEHMEE- 250 (503)
T ss_pred CCCCceeeeecccccccccC---CCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecc--cccHHHHHHHHHHHHH-
Confidence 99955555568888888754 3788899999999999999998 89999999864443 4899999999998866
Q ss_pred CCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC-----cEEe
Q psy1545 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHA 263 (454)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-----~~~~ 263 (454)
+||++...+.+.+++..++ +...|...+. -+-+
T Consensus 251 ----------------------------------------~Gikf~~~~vp~~Veq~~~--g~l~v~~k~t~t~~~~~~~ 288 (503)
T KOG4716|consen 251 ----------------------------------------RGIKFLRKTVPERVEQIDD--GKLRVFYKNTNTGEEGEEE 288 (503)
T ss_pred ----------------------------------------hCCceeecccceeeeeccC--CcEEEEeecccccccccch
Confidence 9999999988888887664 2344444321 3457
Q ss_pred cCEEEEeeccCcCcc-cccCCCCceec-CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHH
Q psy1545 264 CDIVVSAIGVVPNSN-IQVHGTPFELA-PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAA 341 (454)
Q Consensus 264 ~D~vi~a~G~~p~~~-~~~~~~~l~~~-~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa 341 (454)
+|.|+||+|+.+.++ .-++..|+.+| .+|.|.+|+.-+|++|+|||+||+.... +.+.+.|++.|+..|
T Consensus 289 ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa 359 (503)
T KOG4716|consen 289 YDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLA 359 (503)
T ss_pred hhhhhhhhccccchhhcCCCccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHH
Confidence 899999999999887 34566788875 4588999999999999999999998754 567889999999999
Q ss_pred hhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCC----CCceEE----------Ee-ecCCccEEEEEE-
Q psy1545 342 KCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLE----NDYEIL----------LR-VTRGEEYIKLVM- 405 (454)
Q Consensus 342 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~----~~~~~~----------~~-~~~~~~~~k~~~- 405 (454)
+.+.+..+....+..++.++|++. ++..+|+++..+.. ..++++ +. .+....|+|.++
T Consensus 360 ~Rlf~gs~q~~dy~~V~TTVFTPL------Ey~c~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~ 433 (503)
T KOG4716|consen 360 RRLFAGSTQLMDYDDVATTVFTPL------EYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCE 433 (503)
T ss_pred HHHhcCcceeeeccCCceeeecch------hccccCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeec
Confidence 999986655444555677777765 88999999876641 122221 11 122346999999
Q ss_pred --ECCeEEEEEEEcCC--chHHHHHHHHhcCCCcchhhhhc-cCCCC
Q psy1545 406 --KDGRMQGAVLIGET--EIEEMCENLILNQLDLTDIADDL-LNPNI 447 (454)
Q Consensus 406 --~~~~i~G~~~~g~~--~~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 447 (454)
++.|++|.|++|++ ++++-++.+++.|+|..++.+.+ .||++
T Consensus 434 r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~ 480 (503)
T KOG4716|consen 434 RDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTT 480 (503)
T ss_pred ccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccc
Confidence 58999999999999 47899999999999999986665 57765
No 46
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.5e-38 Score=311.52 Aligned_cols=292 Identities=17% Similarity=0.223 Sum_probs=226.2
Q ss_pred cEEEECCCHHHHHHHHHHhhc-CCCCeEEEECCCCcccccccccccccc-ccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFL-HPGESIGLVTPSGIVKAVTKTVPVTKL-LSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~-~~g~~v~lie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
+|||||||+||+.+|..|+++ .++.+|+|||+++++.+....+.+... ....++.....+.+.+ +++++.++|+.+|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 589999999999999999754 468899999999886544333322111 1112222223344445 9999999999999
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHH----HHHHhh---cCCeEEEEcCchhHHHH
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAV----LQEKLK---SAKKIVVIGNGGIATEL 150 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~----l~~~~~---~~~~vvVvG~G~~g~e~ 150 (454)
++++.|.+.+|++++||+||||||++|..|+++ ++++.+.+.+++.. +.+... .+++++|+|+|.+|+|+
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~ 160 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEI 160 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHH
Confidence 999999998888999999999999999988887 55666666666655 332221 35799999999999999
Q ss_pred HHHhc------C--CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccc
Q psy1545 151 VHELS------N--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNL 222 (454)
Q Consensus 151 a~~l~------g--~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (454)
|..|. + .+|+++ +.+.+++. +++++...+.+.+.+
T Consensus 161 A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~----------------------------------- 203 (364)
T TIGR03169 161 ALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLAR----------------------------------- 203 (364)
T ss_pred HHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHH-----------------------------------
Confidence 98885 2 489999 66666654 566666666666644
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecccccc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t 302 (454)
.||++++++.+++++.+ .+.+++|+++++|.+++|+|.+|+. ++...++.++++|++.||+++||
T Consensus 204 ------~gV~v~~~~~v~~i~~~-------~v~~~~g~~i~~D~vi~a~G~~p~~--~l~~~gl~~~~~g~i~vd~~l~~ 268 (364)
T TIGR03169 204 ------RGIEVHEGAPVTRGPDG-------ALILADGRTLPADAILWATGARAPP--WLAESGLPLDEDGFLRVDPTLQS 268 (364)
T ss_pred ------CCCEEEeCCeeEEEcCC-------eEEeCCCCEEecCEEEEccCCChhh--HHHHcCCCcCCCCeEEECCcccc
Confidence 89999999999998643 3677888899999999999999986 55666777888899999999997
Q ss_pred -ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 303 -SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 303 -~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
+.|||||+|||+..+... .++.+..|..||+++|+||...+.+++
T Consensus 269 ~~~~~Iya~GD~~~~~~~~-----~~~~~~~A~~~g~~~a~ni~~~l~g~~ 314 (364)
T TIGR03169 269 LSHPHVFAAGDCAVITDAP-----RPKAGVYAVRQAPILAANLRASLRGQP 314 (364)
T ss_pred CCCCCEEEeeeeeecCCCC-----CCCchHHHHHhHHHHHHHHHHHhcCCC
Confidence 999999999999753211 134677899999999999998877654
No 47
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=4.6e-36 Score=286.31 Aligned_cols=274 Identities=25% Similarity=0.250 Sum_probs=203.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc------cccccccccccchhhhHHHHHhc-CcEEEcce
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK------TVPVTKLLSDITVEETDANKFEG-LCTVIVDT 75 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~ 75 (454)
+||+|||||+||++||..|++. +.+|+|||+++..+.+.. ++.+.......++.....+.+.+ +++++.++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~ 78 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA--NLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEE 78 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEE
Confidence 6899999999999999999998 899999999874332221 12221112222333334444555 88887789
Q ss_pred EEEEeCccc--EEEeccCcEEEecEEEEecCCCCCCCCCC-C------ceeeeeccchHHHHHHHhhcCCeEEEEcCchh
Q psy1545 76 VAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKIWYS-P------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 76 v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~-~------~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~ 146 (454)
|+.+++... .+.+.++.++.||+||+|||++|+.|++| . .++.....+ .....+++++|+|+|.+
T Consensus 79 v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~------~~~~~~~~v~ViG~G~~ 152 (300)
T TIGR01292 79 VIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCD------GPFFKNKEVAVVGGGDS 152 (300)
T ss_pred EEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecC------hhhcCCCEEEEECCChH
Confidence 999987765 55566677899999999999999888776 1 111111111 11224789999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. +.+|+++++.+.+.. ...+.+.+.
T Consensus 153 ~~e~a~~l~~~~~~V~~v~~~~~~~~-------~~~~~~~l~-------------------------------------- 187 (300)
T TIGR01292 153 AIEEALYLTRIAKKVTLVHRRDKFRA-------EKILLDRLR-------------------------------------- 187 (300)
T ss_pred HHHHHHHHHhhcCEEEEEEeCcccCc-------CHHHHHHHH--------------------------------------
Confidence 999999987 889999999875421 222333332
Q ss_pred CccCC-ceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 225 SSRDT-KITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 225 ~l~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
+. ||++++++.+.+++.++. ...+++. ++ .++++|.+++|+|++|+.+ +++.. +.++++|++.||+
T Consensus 188 ---~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~-~l~~~-~~~~~~g~i~v~~ 259 (300)
T TIGR01292 188 ---KNPNIEFLWNSTVKEIVGDNK---VEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTE-LLKGL-LELDEGGYIVTDE 259 (300)
T ss_pred ---hCCCeEEEeccEEEEEEccCc---EEEEEEEecCCCceEEEEccEEEEeeCCCCChH-HHHHh-heecCCCcEEECC
Confidence 25 999999999999986542 3334442 23 6799999999999999998 77766 6777889999999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+++|++|||||+|||+... ++.+..|+.||+.||.+|..
T Consensus 260 ~~~t~~~~vya~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 260 GMRTSVPGVFAAGDVRDKG---------YRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCccCCCCEEEeecccCcc---------hhhhhhhhhhHHHHHHHHHh
Confidence 9999999999999999732 35678899999999999875
No 48
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=5.1e-35 Score=281.24 Aligned_cols=287 Identities=22% Similarity=0.195 Sum_probs=195.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc---ccc---cccccchhhhHHHHHhc-CcEEEcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP---VTK---LLSDITVEETDANKFEG-LCTVIVD 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~-~i~~~~~ 74 (454)
.+||+||||||||++||..|+++ ++++++||.....+.+..... ++. ......+.....+.... ++++..+
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~--g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARA--NLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD 83 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee
Confidence 47999999999999999999998 889999986544332221111 111 11111112222222233 6677777
Q ss_pred eEEEEeCcccEEEec-cCcEEEecEEEEecCCCCCCCCCCC-ceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHH
Q psy1545 75 TVAAIDPRVNCVITE-KQNRIKYKTLCICTGASPRKIWYSP-HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVH 152 (454)
Q Consensus 75 ~v~~i~~~~~~v~~~-~g~~i~~d~lviAtG~~p~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~ 152 (454)
++..++.....+.+. +...+.||+||+|||++|+.|++|. ..+..........+......+++++|||+|.+|+|+|.
T Consensus 84 ~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~ 163 (321)
T PRK10262 84 HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEAL 163 (321)
T ss_pred EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHH
Confidence 777787766554432 2347899999999999999888871 11111111111111111224899999999999999999
Q ss_pred Hhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCc
Q psy1545 153 ELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTK 230 (454)
Q Consensus 153 ~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~g 230 (454)
.|+ +.+|+++++++.+. .++...+.+.+. +++.|
T Consensus 164 ~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~-----------------------------------------l~~~g 199 (321)
T PRK10262 164 YLSNIASEVHLIHRRDGFR---AEKILIKRLMDK-----------------------------------------VENGN 199 (321)
T ss_pred HHHhhCCEEEEEEECCccC---CCHHHHHHHHhh-----------------------------------------ccCCC
Confidence 987 89999999987642 123233333333 34589
Q ss_pred eEEEeCceEEEEEcCCCCccceEEEecCC------cEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc-----c
Q psy1545 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG------HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE-----L 299 (454)
Q Consensus 231 v~i~~~~~v~~i~~~~~~~~~~~v~~~~g------~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~-----~ 299 (454)
|++++++.++++..++. ....+++.++ +++++|.|++++|++|+.. ++.. ++.+ ++|+|.||+ +
T Consensus 200 V~i~~~~~v~~v~~~~~--~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~-l~~~-~l~~-~~g~i~vd~~~~~~~ 274 (321)
T PRK10262 200 IILHTNRTLEEVTGDQM--GVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA-IFEG-QLEL-ENGYIKVQSGIHGNA 274 (321)
T ss_pred eEEEeCCEEEEEEcCCc--cEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh-Hhhc-cccc-cCCEEEECCCCcccc
Confidence 99999999999987542 2334555432 4799999999999999997 6553 4665 468999997 6
Q ss_pred cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 300 MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 300 ~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
++|++|+|||+|||++.+ ......|+.+|..||..|...+
T Consensus 275 ~~t~~~~VyA~GD~~~~~---------~~~~~~A~~~g~~Aa~~~~~~l 314 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHI---------YRQAITSAGTGCMAALDAERYL 314 (321)
T ss_pred cccCCCCEEECeeccCCC---------cceEEEEehhHHHHHHHHHHHH
Confidence 889999999999999753 2344458999999999887644
No 49
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=2e-34 Score=293.02 Aligned_cols=276 Identities=23% Similarity=0.271 Sum_probs=200.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-----cccccchhhhHHHHHhc-CcEEEc-ce
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-----LLSDITVEETDANKFEG-LCTVIV-DT 75 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~i~~~~-~~ 75 (454)
+||+||||||||++||..|++. |.+|+|+++. ..+.+.+...... .....++.....+.+.+ +++++. .+
T Consensus 213 ~dVvIIGgGpAGl~AA~~la~~--G~~v~li~~~-~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~ 289 (515)
T TIGR03140 213 YDVLVVGGGPAGAAAAIYAARK--GLRTAMVAER-IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQR 289 (515)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCcEEEEecC-CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCE
Confidence 7999999999999999999998 9999999753 2222211111100 01122233334444555 899875 48
Q ss_pred EEEEeCcc--cEEEeccCcEEEecEEEEecCCCCCCCCCCC-------ceeeeeccchHHHHHHHhhcCCeEEEEcCchh
Q psy1545 76 VAAIDPRV--NCVITEKQNRIKYKTLCICTGASPRKIWYSP-------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 76 v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~ 146 (454)
|..++... ..+.+.++..+.||++|+|||++|+.|+++. .++.....+ .....+++++|||||++
T Consensus 290 V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~------~~~~~~k~VvViGgG~~ 363 (515)
T TIGR03140 290 AKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCD------GPFFKGKDVAVIGGGNS 363 (515)
T ss_pred EEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccC------hhhcCCCEEEEECCcHH
Confidence 88887654 3566667788999999999999998888771 111111111 11234899999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..|+ +.+||++++.+.+.. ...+.+.+.
T Consensus 364 g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~-------------------------------------- 398 (515)
T TIGR03140 364 GIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLK-------------------------------------- 398 (515)
T ss_pred HHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHh--------------------------------------
Confidence 999999987 889999998776532 122333332
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL 299 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~ 299 (454)
+..||++++++.++++..+++ ....+.+.+ + +++++|.|++++|++|+++ +++.. +.++++|+|.||++
T Consensus 399 --~~~gV~i~~~~~v~~i~~~~~--~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~-~l~~~-~~~~~~G~I~vd~~ 472 (515)
T TIGR03140 399 --SLPNVDILTSAQTTEIVGDGD--KVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTE-WLKDA-VELNRRGEIVIDER 472 (515)
T ss_pred --cCCCCEEEECCeeEEEEcCCC--EEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCch-HHhhh-cccCCCCeEEECCC
Confidence 126999999999999987642 233465543 2 4699999999999999998 87766 77778899999999
Q ss_pred cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 300 MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 300 ~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
+||++|+|||+|||+..+ .+++..|+.+|..||.+|...
T Consensus 473 ~~Ts~p~IyAaGDv~~~~---------~~~~~~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 473 GRTSVPGIFAAGDVTTVP---------YKQIIIAMGEGAKAALSAFDY 511 (515)
T ss_pred CCCCCCCEEEcccccCCc---------cceEEEEEccHHHHHHHHHHH
Confidence 999999999999999754 234557999999999988753
No 50
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=264.33 Aligned_cols=275 Identities=27% Similarity=0.277 Sum_probs=209.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCe-EEEECCCCcccc------ccccccccccccccchhhhHHHHHhc-CcEEEc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGES-IGLVTPSGIVKA------VTKTVPVTKLLSDITVEETDANKFEG-LCTVIV 73 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~-v~lie~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~ 73 (454)
.+||+|||||||||+||.++.+. +.+ ++|+|.....++ ..++|.+.......++.++..++... ++++..
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~--~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~ 80 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARA--GLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE 80 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHc--CCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE
Confidence 68999999999999999999998 878 677776544322 23344444434444555555555555 888888
Q ss_pred ceEEEEeCcc--cEEEeccCcEEEecEEEEecCCCCCCCCCC-------CceeeeeccchHHHHHHHhhcCCeEEEEcCc
Q psy1545 74 DTVAAIDPRV--NCVITEKQNRIKYKTLCICTGASPRKIWYS-------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNG 144 (454)
Q Consensus 74 ~~v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G 144 (454)
..+..++... ..|.++++. +++++||||||+.++.|.++ .+++.+ ...|. .+ .+|+++|||||
T Consensus 81 ~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc-~~cdg-~~-----~~k~v~ViGgG 152 (305)
T COG0492 81 DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYC-ATCDG-FF-----KGKDVVVIGGG 152 (305)
T ss_pred EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEe-eecCc-cc-----cCCeEEEEcCC
Confidence 8888888765 467776675 99999999999998888765 234333 33444 22 38899999999
Q ss_pred hhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccc
Q psy1545 145 GIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNL 222 (454)
Q Consensus 145 ~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (454)
.+++|.|..|. +.+||+++|++.+.+ .+.+.+++.+
T Consensus 153 ~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~----------------------------------- 190 (305)
T COG0492 153 DSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKK----------------------------------- 190 (305)
T ss_pred HHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHh-----------------------------------
Confidence 99999999997 888999999987654 3445555533
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecC--C--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN--G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~--g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
..+|++++++.+.++..++ ...+.+.+ + +++++|-+++++|..|+.+ ++...+. ++++|+|.||+
T Consensus 191 -----~~~i~~~~~~~i~ei~G~~----v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~-~~~~~~~-~~~~g~I~v~~ 259 (305)
T COG0492 191 -----NVKIEVLTNTVVKEILGDD----VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTE-LLKGLGV-LDENGYIVVDE 259 (305)
T ss_pred -----cCCeEEEeCCceeEEecCc----cceEEEEecCCceEEEEeceEEEecCCCCchH-HHhhccc-cCCCCcEEcCC
Confidence 1389999999999999864 23455554 3 4789999999999999998 8777666 78899999999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
.++||+|+|||+|||+... .++...|..+|-.||.++...+
T Consensus 260 ~~~TsvpGifAaGDv~~~~---------~rqi~ta~~~G~~Aa~~a~~~l 300 (305)
T COG0492 260 EMETSVPGIFAAGDVADKN---------GRQIATAAGDGAIAALSAERYL 300 (305)
T ss_pred CcccCCCCEEEeEeeccCc---------ccEEeehhhhHHHHHHHHHHHh
Confidence 9999999999999999865 2356678899999988876543
No 51
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=4.9e-34 Score=285.30 Aligned_cols=278 Identities=20% Similarity=0.243 Sum_probs=197.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
.++|+|||||+||+++|..|++. |++|+|+|+++.+++...+. ++....+.++.....+.+.+ +++++.+...
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~--G~~V~vie~~~~~GG~l~~g-ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v--- 206 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKA--GHSVTVFEALHKPGGVVTYG-IPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV--- 206 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCcEeeec-CCCccCCHHHHHHHHHHHHhCCcEEEeCCcc---
Confidence 36899999999999999999998 89999999987665433221 11111112333334455556 9998876543
Q ss_pred CcccEEEeccCcEEEecEEEEecCC-CCCCCCCC-CceeeeeccchHHHHHHH------------hhcCCeEEEEcCchh
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDSVAVLQEK------------LKSAKKIVVIGNGGI 146 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~~~~l~~~------------~~~~~~vvVvG~G~~ 146 (454)
.+.+.+++. ...||+||||||+ .|+.++++ .....+.+..++...... ...+++++|||+|++
T Consensus 207 --~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 283 (449)
T TIGR01316 207 --GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNT 283 (449)
T ss_pred --CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHH
Confidence 233444333 3579999999998 68888877 222222333333322111 124789999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. |++||++.|+++.. +. ......+.+
T Consensus 284 a~d~A~~l~~~G~~Vtlv~~~~~~~---~~--~~~~~~~~l--------------------------------------- 319 (449)
T TIGR01316 284 AVDSARTALRLGAEVHCLYRRTRED---MT--ARVEEIAHA--------------------------------------- 319 (449)
T ss_pred HHHHHHHHHHcCCEEEEEeecCccc---CC--CCHHHHHHH---------------------------------------
Confidence 999999886 99999999876421 11 111112223
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEec---------CC-----------cEEecCEEEEeeccCcCcccccCCC
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---------NG-----------HTHACDIVVSAIGVVPNSNIQVHGT 284 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---------~g-----------~~~~~D~vi~a~G~~p~~~~~~~~~ 284 (454)
++.||++++++.+.++..+++ +....+++. +| .++++|.||+|+|+.|+.. +++..
T Consensus 320 --~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~-~l~~~ 395 (449)
T TIGR01316 320 --EEEGVKFHFLCQPVEIIGDEE-GNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI-MAETT 395 (449)
T ss_pred --HhCCCEEEeccCcEEEEEcCC-CeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch-hhhcc
Confidence 348999999999999976432 223334332 22 3699999999999999987 88878
Q ss_pred CceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 285 ~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+++++++|+|.||+++||+.|+|||+|||+..+ .++..|+.+|+.||.+|..
T Consensus 396 gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 396 RLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA----------ATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred CcccCCCCeEEeCCCCccCCCCEEEecCCCCCc----------HHHHHHHHHHHHHHHHHHh
Confidence 888888899999999999999999999998643 4678899999999999864
No 52
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=8e-34 Score=290.58 Aligned_cols=277 Identities=23% Similarity=0.296 Sum_probs=197.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccc---ccc--ccccchhhhHHHHHhc-CcEEEcce
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPV---TKL--LSDITVEETDANKFEG-LCTVIVDT 75 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~-~i~~~~~~ 75 (454)
.|||+||||||||++||..|++. +++|+|||++...+.+...... +.. .....+.....+.... +++++.++
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~--g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~~ 81 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA--KLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQAE 81 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEeccE
Confidence 48999999999999999999998 8999999998765443322111 110 1111222223333444 89988889
Q ss_pred EEEEeCccc--EEEeccCcEEEecEEEEecCCCCCCCCCCC-------ceeeeeccchHHHHHHHhhcCCeEEEEcCchh
Q psy1545 76 VAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKIWYSP-------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 76 v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~ 146 (454)
|+.++.+.. .+.+.++ .+.|++||||||++|+.|+++. .++.....+. ....+++++|||||++
T Consensus 82 V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~------~~~~g~~VvVIGgG~~ 154 (555)
T TIGR03143 82 VLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDG------EFFTGMDVFVIGGGFA 154 (555)
T ss_pred EEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecCh------hhcCCCEEEEECCCHH
Confidence 999887653 4555444 6899999999999999988872 1221111111 1224899999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..|. |.+|+++++.+.+.. . ..+...+.
T Consensus 155 g~E~A~~L~~~g~~Vtli~~~~~~~~---~----~~~~~~~~-------------------------------------- 189 (555)
T TIGR03143 155 AAEEAVFLTRYASKVTVIVREPDFTC---A----KLIAEKVK-------------------------------------- 189 (555)
T ss_pred HHHHHHHHHccCCEEEEEEeCCcccc---C----HHHHHHHH--------------------------------------
Confidence 999999886 899999999876421 1 11112221
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCcE----EecCE----EEEeeccCcCcccccCCCCceecCCCc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHT----HACDI----VVSAIGVVPNSNIQVHGTPFELAPDCG 293 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~----~~~D~----vi~a~G~~p~~~~~~~~~~l~~~~~g~ 293 (454)
+..||++++++.|+++..++. ...+.+ .+|++ +++|. |++++|++|+.. ++.. ++.++++|+
T Consensus 190 --~~~gV~i~~~~~V~~i~~~~~---v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~-l~~~-~l~l~~~G~ 262 (555)
T TIGR03143 190 --NHPKIEVKFNTELKEATGDDG---LRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE-LFKG-VVELDKRGY 262 (555)
T ss_pred --hCCCcEEEeCCEEEEEEcCCc---EEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChh-HHhh-hcccCCCCe
Confidence 236999999999999986541 222322 34643 23676 999999999998 7664 577888899
Q ss_pred eEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 294 i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
|.||+++||+.|+|||+|||+... ++.+..|..||+.||.+|...+
T Consensus 263 I~vd~~~~Ts~p~IyAaGDv~~~~---------~~~v~~A~~~G~~Aa~~i~~~l 308 (555)
T TIGR03143 263 IPTNEDMETNVPGVYAAGDLRPKE---------LRQVVTAVADGAIAATSAERYV 308 (555)
T ss_pred EEeCCccccCCCCEEEceeccCCC---------cchheeHHhhHHHHHHHHHHHH
Confidence 999999999999999999997532 2455679999999999987444
No 53
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.8e-33 Score=281.67 Aligned_cols=282 Identities=18% Similarity=0.230 Sum_probs=197.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccc-cccccchhhhHHHHHhc-CcEEEcceEEEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-LLSDITVEETDANKFEG-LCTVIVDTVAAI 79 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i 79 (454)
.+||+||||||||++||..|++. |++|+|+|+.+..++...+. .+. .++...+.....+++.+ +++++.+....
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~--G~~V~v~e~~~~~GG~l~~g-ip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~- 215 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKM--GYDVTIFEALHEPGGVLVYG-IPEFRLPKETVVKKEIENIKKLGVKIETNVVVG- 215 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCCCCeeeec-CCCccCCccHHHHHHHHHHHHcCCEEEcCCEEC-
Confidence 36899999999999999999998 89999999987665443321 111 11112233334455666 89987765331
Q ss_pred eCcccEEEeccC-cEEEecEEEEecCC-CCCCCCCC-CceeeeeccchHHHHHH-----------HhhcCCeEEEEcCch
Q psy1545 80 DPRVNCVITEKQ-NRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDSVAVLQE-----------KLKSAKKIVVIGNGG 145 (454)
Q Consensus 80 ~~~~~~v~~~~g-~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~~~~l~~-----------~~~~~~~vvVvG~G~ 145 (454)
+.+.+++. +.+.||+||||||+ .|+.++++ .+...+.+..++..... ....+++++|||+|+
T Consensus 216 ----~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 291 (464)
T PRK12831 216 ----KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGN 291 (464)
T ss_pred ----CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcH
Confidence 22333332 34679999999999 58888887 22223344444443221 123579999999999
Q ss_pred hHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 146 IATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 146 ~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
+|+|+|..+. |++|+++.|++... +.... ..+ ..+
T Consensus 292 va~d~A~~l~r~Ga~Vtlv~r~~~~~---m~a~~-~e~-~~a-------------------------------------- 328 (464)
T PRK12831 292 VAMDAARTALRLGAEVHIVYRRSEEE---LPARV-EEV-HHA-------------------------------------- 328 (464)
T ss_pred HHHHHHHHHHHcCCEEEEEeecCccc---CCCCH-HHH-HHH--------------------------------------
Confidence 9999999886 99999999865311 11111 111 112
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec------------------CC--cEEecCEEEEeeccCcCcccccCC
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT------------------NG--HTHACDIVVSAIGVVPNSNIQVHG 283 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~------------------~g--~~~~~D~vi~a~G~~p~~~~~~~~ 283 (454)
++.||++++++.+.++..+++ +....+++. +| .++++|.||+|+|..|+.. ++..
T Consensus 329 ---~~eGV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~~ 403 (464)
T PRK12831 329 ---KEEGVIFDLLTNPVEILGDEN-GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL-ISST 403 (464)
T ss_pred ---HHcCCEEEecccceEEEecCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChh-hhcc
Confidence 337999999999999875432 222223321 22 3699999999999999997 7765
Q ss_pred -CCceecCCCceEeccc-cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 284 -TPFELAPDCGIGVNEL-MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 284 -~~l~~~~~g~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
.++.++++|+|.||++ ++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 404 ~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~~L~ 461 (464)
T PRK12831 404 TKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDEYLS 461 (464)
T ss_pred cCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHHHhc
Confidence 6888888899999988 999999999999998643 4667899999999999986554
No 54
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=100.00 E-value=5.3e-33 Score=282.93 Aligned_cols=278 Identities=22% Similarity=0.242 Sum_probs=202.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc---ccccc--ccccccchhhhHHHHHhc-CcEEEcc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK---TVPVT--KLLSDITVEETDANKFEG-LCTVIVD- 74 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~-~i~~~~~- 74 (454)
.+|++||||||||++||.+|++. |++++|+++. ..+.+.. .+.+. ......++.......+.+ +++++.+
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~--G~~v~li~~~-~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~ 287 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARK--GIRTGIVAER-FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ 287 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecC-CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence 37999999999999999999998 9999999874 2221111 11110 011122333333444455 8888754
Q ss_pred eEEEEeCc--ccEEEeccCcEEEecEEEEecCCCCCCCCCCC-------ceeeeeccchHHHHHHHhhcCCeEEEEcCch
Q psy1545 75 TVAAIDPR--VNCVITEKQNRIKYKTLCICTGASPRKIWYSP-------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGG 145 (454)
Q Consensus 75 ~v~~i~~~--~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~ 145 (454)
+|..++.. ...|.+.++..+.||++|+|||++|+.+++|. .++.....+. ...++++++|||+|+
T Consensus 288 ~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~------~~~~gk~VvVVGgG~ 361 (517)
T PRK15317 288 RASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDG------PLFKGKRVAVIGGGN 361 (517)
T ss_pred EEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCc------hhcCCCEEEEECCCH
Confidence 89888875 34566677788999999999999998887761 1211111111 112489999999999
Q ss_pred hHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 146 IATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 146 ~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
+|+|+|..|+ +.+|+++++++.+.. ...+.+.+.
T Consensus 362 ~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------~~~l~~~l~------------------------------------- 397 (517)
T PRK15317 362 SGVEAAIDLAGIVKHVTVLEFAPELKA-------DQVLQDKLR------------------------------------- 397 (517)
T ss_pred HHHHHHHHHHhcCCEEEEEEECccccc-------cHHHHHHHh-------------------------------------
Confidence 9999999997 899999998876532 123333332
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
+..||++++++.++++..++ +....+.+.+ | +++++|.+++++|++|+++ +++.. +.++++|+|.||+
T Consensus 398 ---~~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~-~l~~~-v~~~~~g~i~vd~ 470 (517)
T PRK15317 398 ---SLPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTE-WLKGT-VELNRRGEIIVDA 470 (517)
T ss_pred ---cCCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcCEEEEeECCccCch-HHhhh-eeeCCCCcEEECc
Confidence 12699999999999998764 2233455543 3 4699999999999999998 88766 7788889999999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
++||++|+|||+|||+..+ .+....|+.+|..||.++...+
T Consensus 471 ~l~Ts~p~IyAaGDv~~~~---------~k~~~~A~~eG~~Aa~~~~~~l 511 (517)
T PRK15317 471 RGATSVPGVFAAGDCTTVP---------YKQIIIAMGEGAKAALSAFDYL 511 (517)
T ss_pred CCCCCCCCEEECccccCCC---------CCEEEEhhhhHHHHHHHHHHHH
Confidence 9999999999999999764 2456679999999999987644
No 55
>KOG1346|consensus
Probab=100.00 E-value=2.2e-32 Score=251.54 Aligned_cols=383 Identities=23% Similarity=0.311 Sum_probs=271.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccccc---------------------------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDI--------------------------- 55 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~--------------------------- 55 (454)
...+|||||.+..+++...+..+++.++.+|..++..+ +++|++++.+..+
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelP--YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP--YMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred CceeEEcCCchhhhcccccccCCCCceEEeeccCccCc--ccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence 34789999999999998888888899999999887764 4666655533211
Q ss_pred -chhhhHHHHHhc-CcEEEcc-eEEEEeCcccEEEeccCcEEEecEEEEecCCCCCCCCCC--------Cceeeeeccch
Q psy1545 56 -TVEETDANKFEG-LCTVIVD-TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--------PHVITIRDTDS 124 (454)
Q Consensus 56 -~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--------~~~~~~~~~~~ 124 (454)
.+..+.+..... +|.+.++ +|+.++.+.+.|.++||.+|.||+++||||.+|+..+.. ..+..++.+.|
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~D 336 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPAD 336 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchH
Confidence 011111222222 8899888 999999999999999999999999999999999887643 56788899999
Q ss_pred HHHHHHHhhcCCeEEEEcCchhHHHHHHHhc------CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh
Q psy1545 125 VAVLQEKLKSAKKIVVIGNGGIATELVHELS------NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK 198 (454)
Q Consensus 125 ~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~ 198 (454)
+.++++.+..-+++.|||+|++|.|+|+.|. |.+|+-+-....- +...+.+++.+ +
T Consensus 337 F~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n--------m~kiLPeyls~-------w--- 398 (659)
T KOG1346|consen 337 FKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN--------MEKILPEYLSQ-------W--- 398 (659)
T ss_pred HHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC--------hhhhhHHHHHH-------H---
Confidence 9999998888899999999999999999884 6677765433222 23333333322 0
Q ss_pred hcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 199 RMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
-.+.+++.||.++.|..|.++..... .+.++++||.++..|+|++|+|..||.+
T Consensus 399 -----------------------t~ekir~~GV~V~pna~v~sv~~~~~---nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 399 -----------------------TIEKIRKGGVDVRPNAKVESVRKCCK---NLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred -----------------------HHHHHHhcCceeccchhhhhhhhhcc---ceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 01222458999999999999877652 5789999999999999999999999999
Q ss_pred cccCCCCceecCC-CceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceecc
Q psy1545 279 IQVHGTPFELAPD-CGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDF 357 (454)
Q Consensus 279 ~~~~~~~l~~~~~-g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~ 357 (454)
+++..|+++|++ |++.||..++.. .|||++||++......-+. +....|.+|.-.||.|+.||.+..+.. ..-
T Consensus 453 -la~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENMtgAakpy---~hq 526 (659)
T KOG1346|consen 453 -LAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENMTGAAKPY---KHQ 526 (659)
T ss_pred -hcccccceeecccCcEEeeheeecc-cceeeecchhhhhcccccc-eeccccccceeeceecccccccccCCc---ccc
Confidence 999999999866 889999999864 8999999999875444333 334678889999999999999865421 110
Q ss_pred ceeeee-eeeeecCe--------EEEEeecccC---CcC--------CCCc--------eEE----------EeecC--C
Q psy1545 358 SFEMFT-HMTKFFGY--------KVILLGLFNG---QTL--------ENDY--------EIL----------LRVTR--G 397 (454)
Q Consensus 358 ~~~~~~-~~~~~~~~--------~~~~vG~~~~---~~~--------~~~~--------~~~----------~~~~~--~ 397 (454)
.+|+ .+.-..|+ .+-+||.+.. +.+ +.++ +.. +..++ .
T Consensus 527 --smFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~ 604 (659)
T KOG1346|consen 527 --SMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEA 604 (659)
T ss_pred --ceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhhccCCCCccccccccccccccCCcCCCCCccCcccc
Confidence 0111 11000111 1112222110 000 0000 000 00111 1
Q ss_pred ccEEE---EEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhh
Q psy1545 398 EEYIK---LVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIA 439 (454)
Q Consensus 398 ~~~~k---~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~ 439 (454)
..|=| +|.++++|+|+.++.--..+.+.+..|..+...+|+.
T Consensus 605 ~~ygKgViFYl~d~~iVGilLwN~Fnr~~~AR~II~d~kk~ddln 649 (659)
T KOG1346|consen 605 GNYGKGVIFYLKDDKIVGILLWNLFNRIGLARTIINDNKKYDDLN 649 (659)
T ss_pred cccCceEEEEecCCcEEEEEehhhhccchhhHHHhccccchhhHH
Confidence 22333 3338999999999988778888999999999999974
No 56
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=9.5e-32 Score=270.24 Aligned_cols=281 Identities=19% Similarity=0.238 Sum_probs=195.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+|||||+||+++|..|++. +++|+|+|+++..++...+. .+......++.....+.+.+ +++++.+....
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~--g~~V~lie~~~~~gG~l~~g-ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~--- 214 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARK--GYDVTIFEARDKAGGLLRYG-IPEFRLPKDIVDREVERLLKLGVEIRTNTEVG--- 214 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCCcEeecc-CCCccCCHHHHHHHHHHHHHcCCEEEeCCEEC---
Confidence 6899999999999999999998 89999999998765443321 11111122333444455555 89987665431
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHH------hhcCCeEEEEcCchhHHHHHHH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEK------LKSAKKIVVIGNGGIATELVHE 153 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~------~~~~~~vvVvG~G~~g~e~a~~ 153 (454)
+.+.+++. .+.||+||+|||+. |+.++++ .....+.+..++...... +..+++++|||+|.+|+|+|..
T Consensus 215 --~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~ 291 (457)
T PRK11749 215 --RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAART 291 (457)
T ss_pred --CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHH
Confidence 22333333 37899999999995 6766666 222222333333322211 1248999999999999999998
Q ss_pred hc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCc
Q psy1545 154 LS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTK 230 (454)
Q Consensus 154 l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~g 230 (454)
+. |. +|+++.+++... +... ....+.+ ++.|
T Consensus 292 l~~~G~~~Vtlv~~~~~~~---~~~~--~~~~~~~-----------------------------------------~~~G 325 (457)
T PRK11749 292 AKRLGAESVTIVYRRGREE---MPAS--EEEVEHA-----------------------------------------KEEG 325 (457)
T ss_pred HHHcCCCeEEEeeecCccc---CCCC--HHHHHHH-----------------------------------------HHCC
Confidence 86 76 899999865421 1111 1112233 3389
Q ss_pred eEEEeCceEEEEEcCCCCccceEEEec-------------------CCcEEecCEEEEeeccCcCcccccC-CCCceecC
Q psy1545 231 ITIEYSCEVERIVDSEDDTCNAYVKLT-------------------NGHTHACDIVVSAIGVVPNSNIQVH-GTPFELAP 290 (454)
Q Consensus 231 v~i~~~~~v~~i~~~~~~~~~~~v~~~-------------------~g~~~~~D~vi~a~G~~p~~~~~~~-~~~l~~~~ 290 (454)
|++++++.+.++..+++ ....+.+. +++++++|.|++|+|.+|+.. ++. ..++.+++
T Consensus 326 V~i~~~~~v~~i~~~~~--~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~-l~~~~~gl~~~~ 402 (457)
T PRK11749 326 VEFEWLAAPVEILGDEG--RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPL-ILSTTPGLELNR 402 (457)
T ss_pred CEEEecCCcEEEEecCC--ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCch-hhccccCccCCC
Confidence 99999999999986542 11122221 235799999999999999976 554 45678888
Q ss_pred CCceEecc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 291 DCGIGVNE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 291 ~g~i~vd~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
+|+|.||+ +++|+.|+|||+|||+..+ +++..|+.||+.||.+|...+.++
T Consensus 403 ~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 403 WGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred CCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999998 7899999999999998532 467789999999999998776553
No 57
>KOG2495|consensus
Probab=100.00 E-value=2.5e-32 Score=253.28 Aligned_cols=287 Identities=18% Similarity=0.264 Sum_probs=223.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc----CcEEEcceEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG----LCTVIVDTVA 77 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~v~ 77 (454)
+.+|||+|+|.+|.+++..|-.. ..+|++|++.+++-+.+..|.....--+..-.-+....+.+ ++.++..+.+
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts--~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~ 132 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTS--LYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECT 132 (491)
T ss_pred CceEEEEcCchHHHHHHHhcccc--ccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccE
Confidence 36799999999999999999987 78999999999886655554433322222222233344433 6788899999
Q ss_pred EEeCcccEEEec----cC----cEEEecEEEEecCCCCCCCCCC---CceeeeeccchHHHHHHHhh-------------
Q psy1545 78 AIDPRVNCVITE----KQ----NRIKYKTLCICTGASPRKIWYS---PHVITIRDTDSVAVLQEKLK------------- 133 (454)
Q Consensus 78 ~i~~~~~~v~~~----~g----~~i~~d~lviAtG~~p~~~~~~---~~~~~~~~~~~~~~l~~~~~------------- 133 (454)
.+|++.+.|.++ ++ -.+.||+||+|+|+.+..+.+| ++.+.+...+|+.+++..+-
T Consensus 133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~ 212 (491)
T KOG2495|consen 133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD 212 (491)
T ss_pred eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence 999999988764 33 3689999999999999998888 77777777888887755431
Q ss_pred ----cCCeEEEEcCchhHHHHHHHhc----------------CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCCh
Q psy1545 134 ----SAKKIVVIGNGGIATELVHELS----------------NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193 (454)
Q Consensus 134 ----~~~~vvVvG~G~~g~e~a~~l~----------------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~ 193 (454)
+--+++|||||++|+|+|.+|+ ..+||+++..+.+++ +||..+.+..++.+.+
T Consensus 213 eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFdkrl~~yae~~f~~------ 285 (491)
T KOG2495|consen 213 EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFDKRLVEYAENQFVR------ 285 (491)
T ss_pred HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHHHHHHHHHHHHhhh------
Confidence 1237999999999999999885 248999999999888 5788777777777754
Q ss_pred hhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEee
Q psy1545 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAI 271 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~ 271 (454)
.||++..++.|..+.... +.+...+| +++++-+++|+|
T Consensus 286 -----------------------------------~~I~~~~~t~Vk~V~~~~-----I~~~~~~g~~~~iPYG~lVWat 325 (491)
T KOG2495|consen 286 -----------------------------------DGIDLDTGTMVKKVTEKT-----IHAKTKDGEIEEIPYGLLVWAT 325 (491)
T ss_pred -----------------------------------ccceeecccEEEeecCcE-----EEEEcCCCceeeecceEEEecC
Confidence 899999999999988764 55555666 689999999999
Q ss_pred ccCcCcccccCCCCceecCCC--ceEeccccc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 272 GVVPNSNIQVHGTPFELAPDC--GIGVNELMQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 272 G~~p~~~~~~~~~~l~~~~~g--~i~vd~~~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
|..|.. +.....-.+++.| ++.||++|| .+.+||||+|||+..+ ...++++.|.+||.++|+|+-.
T Consensus 326 G~~~rp--~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~-------~~~~tAQVA~QqG~yLAk~fn~ 394 (491)
T KOG2495|consen 326 GNGPRP--VIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQR-------GLKPTAQVAEQQGAYLAKNFNK 394 (491)
T ss_pred CCCCch--hhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccc-------cCccHHHHHHHHHHHHHHHHHH
Confidence 999876 5555444455556 899999999 7899999999999432 1346899999999999998753
No 58
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=1.2e-31 Score=281.39 Aligned_cols=279 Identities=16% Similarity=0.162 Sum_probs=192.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+||||||||++||..|++. |++|+|+|+.+.+++...+. .+....+.+......+.+.+ +++++.+....
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~--G~~VtV~Ek~~~~GG~lr~~-IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd--- 613 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARA--GHPVTVFEREENAGGVVKNI-IPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD--- 613 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCeEEEEecccccCcceeee-cccccccHHHHHHHHHHHHHcCCEEEeCceeE---
Confidence 5899999999999999999998 89999999988776543321 11111112233334455556 89987664332
Q ss_pred cccEEEeccCcEEEecEEEEecCCCC-CCCCCCCceeeeeccch-HHHH---HHHhhcCCeEEEEcCchhHHHHHHHhc-
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASP-RKIWYSPHVITIRDTDS-VAVL---QEKLKSAKKIVVIGNGGIATELVHELS- 155 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~~~~~~~~~~~~-~~~l---~~~~~~~~~vvVvG~G~~g~e~a~~l~- 155 (454)
+.+++.....||+||||||+++ +.++++.....+.+..+ +... .+.+..+++|+|||||++|+|+|..+.
T Consensus 614 ----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~R 689 (1019)
T PRK09853 614 ----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689 (1019)
T ss_pred ----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHh
Confidence 2333334567999999999974 44455511111122222 2222 222345899999999999999998764
Q ss_pred --C-CcEEEEEeCCC-ccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCce
Q psy1545 156 --N-VDIVWVVKDKH-ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231 (454)
Q Consensus 156 --g-~~V~~i~~~~~-~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv 231 (454)
| .+|+++.|++. .++ ...+.+.+.+ +.||
T Consensus 690 lgGakeVTLVyRr~~~~MP-----A~~eEle~Al------------------------------------------eeGV 722 (1019)
T PRK09853 690 VPGVEKVTVVYRRTKQEMP-----AWREEYEEAL------------------------------------------EDGV 722 (1019)
T ss_pred cCCCceEEEEEccCccccc-----ccHHHHHHHH------------------------------------------HcCC
Confidence 4 48999998763 222 1122222222 2689
Q ss_pred EEEeCceEEEEEcCCC-------------CccceEEEecCCcEEecCEEEEeeccCcCcccccCCCCceecCCCceEecc
Q psy1545 232 TIEYSCEVERIVDSED-------------DTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE 298 (454)
Q Consensus 232 ~i~~~~~v~~i~~~~~-------------~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~ 298 (454)
++++++.+.++..++. .++...+...++.++++|.||+|+|.+|+.+ ++...|+.++++|++.||+
T Consensus 723 e~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pnte-lle~~GL~ld~~G~I~VDe 801 (1019)
T PRK09853 723 EFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTE-LLKANGIPLDKKGWPVVDA 801 (1019)
T ss_pred EEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChh-HHHhcCccccCCCCEEeCC
Confidence 9998888888864221 0111112223346899999999999999998 8888888888889999999
Q ss_pred ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 299 LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 299 ~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
++||+.|+|||+|||+..+ .++..|+.||+.||++|++...
T Consensus 802 tlqTs~pgVFAaGD~a~Gp----------~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 802 NGETSLTNVYMIGDVQRGP----------STIVAAIADARRAADAILSREG 842 (1019)
T ss_pred CcccCCCCEEEEeccccCc----------hHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999998643 4667899999999999998654
No 59
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1e-31 Score=284.78 Aligned_cols=281 Identities=20% Similarity=0.233 Sum_probs=198.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+||||||||++||..|++. |++|+|+|+.+.+++...+. .+....+.++.....+.+.+ +++++.+...
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~--G~~V~v~e~~~~~GG~l~~g-ip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v---- 504 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKR--GYDVTVFEALHEIGGVLKYG-IPEFRLPKKIVDVEIENLKKLGVKFETDVIV---- 504 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCCeeeec-CCCCCCCHHHHHHHHHHHHHCCCEEECCCEE----
Confidence 5899999999999999999998 99999999987665544331 11111112233344455666 9998876543
Q ss_pred cccEEEeccCcEEEecEEEEecCC-CCCCCCCC-CceeeeeccchHHHHHHH-----------hhcCCeEEEEcCchhHH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDSVAVLQEK-----------LKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~~~~l~~~-----------~~~~~~vvVvG~G~~g~ 148 (454)
.+.+++++.....||+||||||+ .|+.++++ .+...+.+..++...... ...+++++|||||++|+
T Consensus 505 -~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 583 (752)
T PRK12778 505 -GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAM 583 (752)
T ss_pred -CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHH
Confidence 23355544445779999999999 58888887 333333444444432211 12468999999999999
Q ss_pred HHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccC
Q psy1545 149 ELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225 (454)
Q Consensus 149 e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (454)
|+|..+. |++ ||++++++... +.... ..+ ..+
T Consensus 584 d~A~~~~r~Ga~~Vtlv~r~~~~~---~~~~~-~e~-~~~---------------------------------------- 618 (752)
T PRK12778 584 DSARTAKRLGAERVTIVYRRSEEE---MPARL-EEV-KHA---------------------------------------- 618 (752)
T ss_pred HHHHHHHHcCCCeEEEeeecCccc---CCCCH-HHH-HHH----------------------------------------
Confidence 9999886 887 99999875411 11111 111 122
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEec---------C---------C--cEEecCEEEEeeccCcCcccccCC-C
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---------N---------G--HTHACDIVVSAIGVVPNSNIQVHG-T 284 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---------~---------g--~~~~~D~vi~a~G~~p~~~~~~~~-~ 284 (454)
++.||++++++.+.++..+++ +....+++. + | .++++|.||+|+|+.|+.. ++.. .
T Consensus 619 -~~~GV~i~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~-l~~~~~ 695 (752)
T PRK12778 619 -KEEGIEFLTLHNPIEYLADEK-GWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL-VPSSIP 695 (752)
T ss_pred -HHcCCEEEecCcceEEEECCC-CEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcc-cccccc
Confidence 337999999999988875432 223333331 1 2 3699999999999999987 6554 3
Q ss_pred CceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 285 ~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
++.++++|+|.||++++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...+.
T Consensus 696 gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~~L~ 750 (752)
T PRK12778 696 GLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG----------ATVILAMGDGKRAAAAIDEYLS 750 (752)
T ss_pred CceECCCCCEEeCCCCCCCCCCEEEeCCccCCc----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 788888899999999999999999999998643 4677899999999999987554
No 60
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=2.9e-31 Score=258.05 Aligned_cols=282 Identities=22% Similarity=0.211 Sum_probs=191.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+|+|||||++|+++|..|++. +.+|+++|+.+.+++..... .+......+......+.+.+ +++++.+ .+..++
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~ 95 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACL--GYEVHVYDKLPEPGGLMLFG-IPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE 95 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCceeeec-CcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence 5899999999999999999998 89999999988765433221 11111111112223344555 8888766 443332
Q ss_pred C----cc-----cEEEeccCcEEEecEEEEecCC-CCCCCCCC-Cceeeeeccch-HHHHHHH---------h--hcCCe
Q psy1545 81 P----RV-----NCVITEKQNRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDS-VAVLQEK---------L--KSAKK 137 (454)
Q Consensus 81 ~----~~-----~~v~~~~g~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~-~~~l~~~---------~--~~~~~ 137 (454)
. .. ..+.. ++..+.||+||||||+ .|+.|+++ .+...+.+..+ +..+... . ..+++
T Consensus 96 ~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 174 (352)
T PRK12770 96 PLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKK 174 (352)
T ss_pred ccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCE
Confidence 2 00 11112 1224789999999999 47777777 22222222222 2222110 0 12589
Q ss_pred EEEEcCchhHHHHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 138 IVVIGNGGIATELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 138 vvVvG~G~~g~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
++|||+|++|+|+|..+. |.+ |+++++++... .+ ........+
T Consensus 175 vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~----~~-~~~~~~~~l----------------------------- 220 (352)
T PRK12770 175 VVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINE----AP-AGKYEIERL----------------------------- 220 (352)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhh----CC-CCHHHHHHH-----------------------------
Confidence 999999999999999875 786 99999875421 11 112233334
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe--------------------cCCcEEecCEEEEeeccC
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--------------------TNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--------------------~~g~~~~~D~vi~a~G~~ 274 (454)
+++||++++++.+.+++..+. ...+++ .+++++++|.|++++|++
T Consensus 221 ------------~~~gi~i~~~~~v~~i~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 221 ------------IARGVEFLELVTPVRIIGEGR---VEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred ------------HHcCCEEeeccCceeeecCCc---EeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 338999999999999876531 222322 123579999999999999
Q ss_pred cCcccccCC-CCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 275 PNSNIQVHG-TPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 275 p~~~~~~~~-~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
|+.. +... .++.++++|+|.||++++|+.|+|||+|||+..+ .....|+.||+.||.+|...+
T Consensus 286 p~~~-l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~l 349 (352)
T PRK12770 286 PTPP-FAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHEWL 349 (352)
T ss_pred CCch-hhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHHHH
Confidence 9987 6655 6788888899999999999999999999998743 467789999999999997654
No 61
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.98 E-value=6.9e-31 Score=280.11 Aligned_cols=282 Identities=17% Similarity=0.194 Sum_probs=199.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+|||||||||+||..|++. |++|+|+|+.+..++...+. .+....+.++.....+.+.. +++|..+....
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~~GG~l~yG-IP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG--- 380 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHDLGGVLRYG-IPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG--- 380 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCCCCceEEcc-CCCCcChHHHHHHHHHHHHhhcCeEEEeEEec---
Confidence 6899999999999999999998 99999999998777654432 11111122344445556666 99987664432
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHHh-------------hcCCeEEEEcCchh
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEKL-------------KSAKKIVVIGNGGI 146 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~~-------------~~~~~vvVvG~G~~ 146 (454)
+.+++++.....||+|+||||+. |+.+++| .+..++++..+++...... ..+++|+|||||.+
T Consensus 381 --~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~t 458 (944)
T PRK12779 381 --KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNT 458 (944)
T ss_pred --cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHH
Confidence 34666555566899999999994 8888888 3334444555554322110 14689999999999
Q ss_pred HHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccccccccc
Q psy1545 147 ATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224 (454)
Q Consensus 147 g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (454)
|+|+|..+. |++|+++.|++.. ..|.....+...
T Consensus 459 A~D~A~ta~R~Ga~Vtlv~rr~~~----~mpa~~~e~~~a---------------------------------------- 494 (944)
T PRK12779 459 AMDAARTAKRLGGNVTIVYRRTKS----EMPARVEELHHA---------------------------------------- 494 (944)
T ss_pred HHHHHHHHHHcCCEEEEEEecCcc----cccccHHHHHHH----------------------------------------
Confidence 999999875 8899999987531 111111112111
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEe---------c--------CC--cEEecCEEEEeeccCcCcccccC-CC
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---------T--------NG--HTHACDIVVSAIGVVPNSNIQVH-GT 284 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---------~--------~g--~~~~~D~vi~a~G~~p~~~~~~~-~~ 284 (454)
.+.||++++++.++++..+++++....+++ . +| .++++|.||+|+|+.|+.. +.. ..
T Consensus 495 --~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~~~~ 571 (944)
T PRK12779 495 --LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKDAEP 571 (944)
T ss_pred --HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhhccc
Confidence 237999999999999876532112222221 1 23 4699999999999999875 432 34
Q ss_pred CceecCCCceEecc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 285 PFELAPDCGIGVNE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 285 ~l~~~~~g~i~vd~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
+++++++|.|.||+ +++|+.|+|||+|||+.++ .+...|+.+|+.||.+|...+.
T Consensus 572 gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~~L~ 627 (944)
T PRK12779 572 GLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG----------STAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CceECCCCCEEECCCCCccCCCCEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 68888889999996 5889999999999998743 4667899999999999986554
No 62
>KOG2755|consensus
Probab=99.98 E-value=3.9e-32 Score=235.84 Aligned_cols=314 Identities=38% Similarity=0.693 Sum_probs=242.0
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDPR 82 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~~ 82 (454)
+.+|||||.||.+||..|+...|..+|+|+..++......++...++.+..|++.++....+.. --+++. .|..++..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~~~s~ 79 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVTWDSS 79 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhhhccc
Confidence 3689999999999999999998999999999999998888888888878888877665555543 113333 48888888
Q ss_pred ccEEEeccCcEEEecEEEEecCCCCCCCC--CCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhcCCcEE
Q psy1545 83 VNCVITEKQNRIKYKTLCICTGASPRKIW--YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIV 160 (454)
Q Consensus 83 ~~~v~~~~g~~i~~d~lviAtG~~p~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~g~~V~ 160 (454)
++.+.+++|.++.|++|++|||++|..-. +.+.+..+++.+.+..++..+.+.|.|+|+|.|-+++|++.++...+|+
T Consensus 80 ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk~~nv~ 159 (334)
T KOG2755|consen 80 EHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELKILNVT 159 (334)
T ss_pred cceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhhcceeE
Confidence 99999999999999999999999986542 2366778889899999999999999999999999999999999999999
Q ss_pred EEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccc-cC-----CCCCCCCCCccccccccccCcc--CCceE
Q psy1545 161 WVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYN-TG-----GEKGPSLGPDWHTQVNLHGSSR--DTKIT 232 (454)
Q Consensus 161 ~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~~l~--~~gv~ 232 (454)
|....+.+...|+||++++.+...++. ...+.....+++++. .. ...++.++|+|..+..+....+ ++-+.
T Consensus 160 w~ikd~~IsaTFfdpGaaef~~i~l~a-~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~ 238 (334)
T KOG2755|consen 160 WKIKDEGISATFFDPGAAEFYDINLRA-DRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLT 238 (334)
T ss_pred EEecchhhhhcccCccHHHHhHhhhhc-ccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhH
Confidence 999999999999999999999888843 334444444444444 11 2478899999999877654442 22233
Q ss_pred EEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeec
Q psy1545 233 IEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAA 310 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~ 310 (454)
...++-+......+. ..........+ ..+.||.+++|+|..||.+ +.-...+...++|++.||+.|+|+.|++||+
T Consensus 239 ~l~~~~~~~~d~~d~-~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e-~~~~~~lq~~edggikvdd~m~tslpdvFa~ 316 (334)
T KOG2755|consen 239 YLRNCVITSTDTSDN-LSVHYMDKEKMADNQLTCDFIVSATGVTPNSE-WAMNKMLQITEDGGIKVDDAMETSLPDVFAA 316 (334)
T ss_pred Hhhhheeeeccchhh-cccccccccccccceeeeeEEEeccccCcCce-EEecChhhhccccCeeehhhccccccceeee
Confidence 333333322222221 01111112222 4678999999999999998 7766667788899999999999999999999
Q ss_pred CcccccCCccc
Q psy1545 311 GDVCTPSWDLA 321 (454)
Q Consensus 311 GD~~~~~~~~~ 321 (454)
||++...++++
T Consensus 317 gDvctt~~~~s 327 (334)
T KOG2755|consen 317 GDVCTTTWEPS 327 (334)
T ss_pred cceeccCCCCc
Confidence 99887654443
No 63
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=1.3e-30 Score=262.49 Aligned_cols=292 Identities=16% Similarity=0.164 Sum_probs=191.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+|||||+||+++|..|++. |++|+|+|+.+..++...+. .+......+......+.+.+ +++++.+.....+.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~--G~~V~vie~~~~~GG~l~~g-ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~ 220 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARA--GHKVTVFERADRIGGLLRYG-IPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDI 220 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCceeeec-CCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcC
Confidence 6899999999999999999998 89999999998776543321 11111122233334455566 89987665443321
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHH-----------HHhhcCCeEEEEcCchhHH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQ-----------EKLKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~-----------~~~~~~~~vvVvG~G~~g~ 148 (454)
.. +.....||+||+|||+. |+.++++ .+..++.+..++..-. .....+++++|||+|++|+
T Consensus 221 -----~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~ 294 (471)
T PRK12810 221 -----TA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGM 294 (471)
T ss_pred -----CH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHH
Confidence 11 11235799999999997 7777776 2222222222221110 0112479999999999999
Q ss_pred HHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccC
Q psy1545 149 ELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225 (454)
Q Consensus 149 e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 225 (454)
|+|..+. |. +|+++++.+.......+......+...+ ..+.
T Consensus 295 e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~ 338 (471)
T PRK12810 295 DCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKL------------------------------------EVSN 338 (471)
T ss_pred HHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHH------------------------------------HHHH
Confidence 9997654 54 7886654432211100000000000000 0111
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEe-----cCC---------cEEecCEEEEeeccCcCcccccCCCCceecCC
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKL-----TNG---------HTHACDIVVSAIGVVPNSNIQVHGTPFELAPD 291 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-----~~g---------~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~ 291 (454)
+++.||++++++.++++...+ +....|++ .+| .++++|.||+|+|.+|+...+++..+++++++
T Consensus 339 ~~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~ 416 (471)
T PRK12810 339 AHEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDER 416 (471)
T ss_pred HHHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCC
Confidence 234799999999999997533 22333332 122 57999999999999998532777778888888
Q ss_pred CceEec-cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 292 CGIGVN-ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 292 g~i~vd-~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
|++.+| ++++|+.|+|||+|||+..+ .++..|+.||+.||.+|...+.++
T Consensus 417 g~i~vd~~~~~Ts~~gVfa~GD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 417 GRVAAPDNAYQTSNPKVFAAGDMRRGQ----------SLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCEEeCCCcccCCCCCEEEccccCCCc----------hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 999998 79999999999999998743 466789999999999998776554
No 64
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.97 E-value=5.4e-30 Score=270.32 Aligned_cols=277 Identities=17% Similarity=0.188 Sum_probs=186.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+||||||||++||+.|++. |++|+|+|+++..++...+. .+....+.+......+.+.+ +++++.+.. .
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~--G~~VTV~Ek~~~lGG~l~~~-IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~----~ 610 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARA--GHPVTVFEKKEKPGGVVKNI-IPEFRISAESIQKDIELVKFHGVEFKYGCS----P 610 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEecccccCceeeec-ccccCCCHHHHHHHHHHHHhcCcEEEEecc----c
Confidence 6899999999999999999998 89999999998776544321 11111112233333445555 888876521 1
Q ss_pred cccEEEeccCcEEEecEEEEecCCCC-CCCCCC-CceeeeeccchHHHHHH---HhhcCCeEEEEcCchhHHHHHHHhc-
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASP-RKIWYS-PHVITIRDTDSVAVLQE---KLKSAKKIVVIGNGGIATELVHELS- 155 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~-~~~~~~~~~~~~~~l~~---~~~~~~~vvVvG~G~~g~e~a~~l~- 155 (454)
.+.+.+.....||+||||||+++ ..++++ .....+...+.+..+.. ....+++|+|||||++|+|+|..+.
T Consensus 611 ---d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~R 687 (1012)
T TIGR03315 611 ---DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALR 687 (1012)
T ss_pred ---ceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHH
Confidence 12233334567999999999974 444554 21111222222222211 1235899999999999999998764
Q ss_pred --CC-cEEEEEeCCC-ccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCce
Q psy1545 156 --NV-DIVWVVKDKH-ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231 (454)
Q Consensus 156 --g~-~V~~i~~~~~-~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv 231 (454)
|. +|+++.|+.. .++. ..+.+.+.+ +.||
T Consensus 688 l~Ga~kVtLVyRr~~~~Mpa-----~~eEl~~al------------------------------------------eeGV 720 (1012)
T TIGR03315 688 VPGVEKVTVVYRRTKRYMPA-----SREELEEAL------------------------------------------EDGV 720 (1012)
T ss_pred hCCCceEEEEEccCcccccc-----CHHHHHHHH------------------------------------------HcCC
Confidence 64 7999998763 2221 111222221 2688
Q ss_pred EEEeCceEEEEEcCC------------CCccceEEEecCC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEec
Q psy1545 232 TIEYSCEVERIVDSE------------DDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVN 297 (454)
Q Consensus 232 ~i~~~~~v~~i~~~~------------~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd 297 (454)
+++++..+.++..+. ..++. ....+| .++++|.||+|+|..|+.+ +++..++.++.+|++.||
T Consensus 721 e~~~~~~p~~I~~g~l~v~~~~l~~~d~sGr~--~~v~~Gee~~I~aD~VIvAiG~~Pnt~-lle~~GL~ld~~G~I~VD 797 (1012)
T TIGR03315 721 DFKELLSPESFEDGTLTCEVMKLGEPDASGRR--RPVGTGETVDLPADTVIAAVGEQVDTD-LLQKNGIPLDEYGWPVVN 797 (1012)
T ss_pred EEEeCCceEEEECCeEEEEEEEeecccCCCce--eeecCCCeEEEEeCEEEEecCCcCChH-HHHhcCcccCCCCCEEeC
Confidence 888888777776211 00000 011223 3689999999999999998 888888888888999999
Q ss_pred cc-cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 298 EL-MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 298 ~~-~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
++ ++|+.|+|||+|||+..+ ..+..|+.||+.||.+|++...
T Consensus 798 ~~~~~Ts~pgVFAaGD~a~GP----------~tVv~AIaqGr~AA~nIl~~~~ 840 (1012)
T TIGR03315 798 QATGETNITNVFVIGDANRGP----------ATIVEAIADGRKAANAILSREG 840 (1012)
T ss_pred CCCCccCCCCEEEEeCcCCCc----------cHHHHHHHHHHHHHHHHhcccc
Confidence 86 899999999999998643 4667899999999999997643
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=273.29 Aligned_cols=283 Identities=16% Similarity=0.192 Sum_probs=195.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+||||||||++||..|+++ |++|+|+|+.+..++...+ ..+......++.....+.+.+ +++++.+.+...
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~--G~~VtV~E~~~~~GG~l~~-gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~-- 505 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKY--GVDVTVYEALHVVGGVLQY-GIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK-- 505 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCCcceeec-cCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC--
Confidence 5899999999999999999998 9999999999877654433 111112223444455666666 999887654322
Q ss_pred cccEEEeccCc-EEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHH------------hhcCCeEEEEcCchh
Q psy1545 82 RVNCVITEKQN-RIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEK------------LKSAKKIVVIGNGGI 146 (454)
Q Consensus 82 ~~~~v~~~~g~-~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~------------~~~~~~vvVvG~G~~ 146 (454)
.+++++-. ...||+||||||+. |+.+++| .+...+.+..+++...+. ...+++|+|||||++
T Consensus 506 ---~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t 582 (1006)
T PRK12775 506 ---TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT 582 (1006)
T ss_pred ---ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence 23322211 24699999999995 8888887 222233344444433221 124799999999999
Q ss_pred HHHHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 147 ATELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 147 g~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
|+++|..+. |+ .|+++.|+.... +... ... .+.+
T Consensus 583 A~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~-~~e-~~~a-------------------------------------- 619 (1006)
T PRK12775 583 AMDCLRVAKRLGAPTVRCVYRRSEAE---APAR-IEE-IRHA-------------------------------------- 619 (1006)
T ss_pred HHHHHHHHHHcCCCEEEEEeecCccc---CCCC-HHH-HHHH--------------------------------------
Confidence 999998775 76 588888754321 1111 010 1122
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec-----------------CC--cEEecCEEEEeeccCcCcccccCC-
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-----------------NG--HTHACDIVVSAIGVVPNSNIQVHG- 283 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-----------------~g--~~~~~D~vi~a~G~~p~~~~~~~~- 283 (454)
++.||++++++.+.++..+++ +....+++. +| .++++|.||+|+|..|+.. ++..
T Consensus 620 ---~eeGI~~~~~~~p~~i~~~~~-G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~-~~~~~ 694 (1006)
T PRK12775 620 ---KEEGIDFFFLHSPVEIYVDAE-GSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI-ITQST 694 (1006)
T ss_pred ---HhCCCEEEecCCcEEEEeCCC-CeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh-hhhcc
Confidence 348999999999999875432 223333321 12 3699999999999999987 6544
Q ss_pred CCceecCCCceEecc-----ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 284 TPFELAPDCGIGVNE-----LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 284 ~~l~~~~~g~i~vd~-----~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
.++.++.+|.|.+|+ +++|++|+|||+|||+.++ .++..|+.+|+.||.+|...+.+.
T Consensus 695 ~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 695 PGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367888889999996 7899999999999998643 466789999999999998766543
No 66
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.97 E-value=2.9e-28 Score=243.18 Aligned_cols=380 Identities=22% Similarity=0.227 Sum_probs=268.2
Q ss_pred EEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc--ccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT--VPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 5 vvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
++|||+|++|+++|..+++..++.+++++..+....+.... ..+................... ++.+.. .+|+.++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 58999999999999999998888899988877654322111 1111111111111111112223 788765 4899999
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC--CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--C
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--N 156 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g 156 (454)
+..+.+.+.++ .+.||+|++|||++|..++.. ..++..+..++...+.......++++|+|+|++|+|+|..+. |
T Consensus 81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G 159 (415)
T COG0446 81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRG 159 (415)
T ss_pred CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcC
Confidence 99999999888 899999999999999888632 668888888888888876655789999999999999999986 9
Q ss_pred CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeC
Q psy1545 157 VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYS 236 (454)
Q Consensus 157 ~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~ 236 (454)
.+|++++..+++.++.+.++..+.+.+.+.+ .||+++++
T Consensus 160 ~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~-----------------------------------------~gi~~~~~ 198 (415)
T COG0446 160 KKVTLIEAADRLGGQLLDPEVAEELAELLEK-----------------------------------------YGVELLLG 198 (415)
T ss_pred CeEEEEEcccccchhhhhHHHHHHHHHHHHH-----------------------------------------CCcEEEeC
Confidence 9999999999998863326666666666654 89999999
Q ss_pred ceEEEEEcCCCCccceE--EEecCCcEEecCEEEEeeccCcCcccccCCCCc-eecCCCceEeccccccc-cCceeecCc
Q psy1545 237 CEVERIVDSEDDTCNAY--VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPF-ELAPDCGIGVNELMQTS-ISNVYAAGD 312 (454)
Q Consensus 237 ~~v~~i~~~~~~~~~~~--v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~l-~~~~~g~i~vd~~~~t~-~~~Iya~GD 312 (454)
..+.+++...+ .... +...++..+++|.+++++|.+|+.. +....+. ....+|++.||++++|+ .++|||+||
T Consensus 199 ~~~~~i~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~-l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD 275 (415)
T COG0446 199 TKVVGVEGKGN--TLVVERVVGIDGEEIKADLVIIGPGERPNVV-LANDALPGLALAGGAVLVDERGGTSKDPDVYAAGD 275 (415)
T ss_pred CceEEEEcccC--cceeeEEEEeCCcEEEeeEEEEeecccccHH-HHhhCccceeccCCCEEEccccccCCCCCEEeccc
Confidence 99999998763 1122 5778888999999999999999976 6655541 34567889999999997 999999999
Q ss_pred ccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeeeeeeeecCeEEEEeecccCCcCCCCce--E
Q psy1545 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYE--I 390 (454)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~ 390 (454)
|+..+............++.|..+++.++.++.+. . .++......+...++......|.+.. . ..... .
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~g~~~~-~-~~~~~~~~ 346 (415)
T COG0446 276 VAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-L------RIPGLLGTVISDVGDLCAASTGLTEG-K-ERGIDVVL 346 (415)
T ss_pred eEeeecccCCceeeeechhhHhhhhHHHHHHhccc-c------ccccccCceEEEEcCeEEEEecCCcc-c-ccceeeeE
Confidence 99875443222334678999999999999999975 1 11112222334556667777777764 1 11000 0
Q ss_pred --EEe------ecCC--ccEEEEEE--ECCeEEEEEEEcCCchHHHHHHHHhcCCCcchh
Q psy1545 391 --LLR------VTRG--EEYIKLVM--KDGRMQGAVLIGETEIEEMCENLILNQLDLTDI 438 (454)
Q Consensus 391 --~~~------~~~~--~~~~k~~~--~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~ 438 (454)
... ..+. ....|... ++++++|++..+.......+...+..+.++.++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (415)
T COG0446 347 VVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQELEVLKRIGALALAIGLGDTVAEL 406 (415)
T ss_pred EEeccCcccccccCCCCeEEEEEEEcCcccceehhhhHHHHhhhhhhhhhhhhcCchhhh
Confidence 000 0011 12556665 678899888821001344556667777777764
No 67
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.97 E-value=3.9e-30 Score=267.44 Aligned_cols=282 Identities=18% Similarity=0.228 Sum_probs=193.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+|||||+||+++|..|++. |++|+|+|+++..++...+. ++......++.....+.+.+ ++++..+.....+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~--G~~Vtv~e~~~~~GG~l~~g-ip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d- 269 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQAGGMMRYG-IPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD- 269 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCceeeec-CCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc-
Confidence 6899999999999999999998 89999999998776544331 11111122233334455555 8888766543222
Q ss_pred cccEEEeccCcEEEecEEEEecCCCC-CCCCCC-CceeeeeccchHHHHH---HHhhcCCeEEEEcCchhHHHHHHHhc-
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASP-RKIWYS-PHVITIRDTDSVAVLQ---EKLKSAKKIVVIGNGGIATELVHELS- 155 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~-~~~~~~~~~~~~~~l~---~~~~~~~~vvVvG~G~~g~e~a~~l~- 155 (454)
+.+++. ...||+||||||+++ +.++++ .+...+.+..++.+.. .....+++++|||+|++|+|+|..+.
T Consensus 270 ----v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~ 344 (652)
T PRK12814 270 ----ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALR 344 (652)
T ss_pred ----cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHH
Confidence 222222 235999999999975 456666 2222222222222211 12335899999999999999999875
Q ss_pred -CC-cEEEEEeCCC-ccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceE
Q psy1545 156 -NV-DIVWVVKDKH-ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKIT 232 (454)
Q Consensus 156 -g~-~V~~i~~~~~-~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~ 232 (454)
|. +|+++.|+++ .++ .. ...+.+. .+.||+
T Consensus 345 ~Ga~~Vtlv~r~~~~~mp----a~-~~ei~~a------------------------------------------~~eGV~ 377 (652)
T PRK12814 345 LGAESVTILYRRTREEMP----AN-RAEIEEA------------------------------------------LAEGVS 377 (652)
T ss_pred cCCCeEEEeeecCcccCC----CC-HHHHHHH------------------------------------------HHcCCc
Confidence 65 6999998764 222 11 1112111 126999
Q ss_pred EEeCceEEEEEcCCCCccce-EEEec---------------CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCce
Q psy1545 233 IEYSCEVERIVDSEDDTCNA-YVKLT---------------NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGI 294 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~-~v~~~---------------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i 294 (454)
+++++.+.++...++ ...+ .+.+. +| .++++|.||+|+|..|+.. ++...++.++.+|+|
T Consensus 378 i~~~~~~~~i~~~~~-~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~-ll~~~gl~~~~~G~I 455 (652)
T PRK12814 378 LRELAAPVSIERSEG-GLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP-IAEAAGIGTSRNGTV 455 (652)
T ss_pred EEeccCcEEEEecCC-eEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcc-cccccCccccCCCcE
Confidence 999998888875432 1111 11111 22 3699999999999999998 888888888888999
Q ss_pred Eecc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCc
Q psy1545 295 GVNE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352 (454)
Q Consensus 295 ~vd~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~ 352 (454)
.||+ +++|+.|+|||+|||+..+ .++..|+.||+.||.+|...+.+++
T Consensus 456 ~vd~~~~~Ts~pgVfA~GDv~~g~----------~~v~~Ai~~G~~AA~~I~~~L~g~~ 504 (652)
T PRK12814 456 KVDPETLQTSVAGVFAGGDCVTGA----------DIAINAVEQGKRAAHAIDLFLNGKP 504 (652)
T ss_pred eeCCCCCcCCCCCEEEcCCcCCCc----------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9997 5889999999999998643 4677899999999999988777654
No 68
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.97 E-value=2.2e-28 Score=245.30 Aligned_cols=278 Identities=17% Similarity=0.174 Sum_probs=186.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+|||||++|+++|..|++. |++|+++|+.+.+++...+. .+......++.....+.+.+ +++++.+....
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~~~gG~l~~g-ip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~--- 215 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHPEIGGLLTFG-IPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG--- 215 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCceeeec-CccccCCHHHHHHHHHHHHHCCCEEECCCEeC---
Confidence 6899999999999999999998 89999999998776544431 11111122233334455555 89887553221
Q ss_pred cccEEEeccCcEEEecEEEEecCCCCC-CCCCC-CceeeeeccchHHHHHH--------------HhhcCCeEEEEcCch
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASPR-KIWYS-PHVITIRDTDSVAVLQE--------------KLKSAKKIVVIGNGG 145 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p~-~~~~~-~~~~~~~~~~~~~~l~~--------------~~~~~~~vvVvG~G~ 145 (454)
+.+.+++ ....||.||+|||+.+. .++++ .+...+.+..++..... ....+++++|+|+|.
T Consensus 216 --~~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 292 (467)
T TIGR01318 216 --RDISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGD 292 (467)
T ss_pred --CccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcH
Confidence 1122222 23579999999999864 45665 22122222222111000 001368999999999
Q ss_pred hHHHHHHHhc--CC-cEEEEEeCCCc-cccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 146 IATELVHELS--NV-DIVWVVKDKHI-SATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 146 ~g~e~a~~l~--g~-~V~~i~~~~~~-~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
+|+++|..+. |+ +||+++|++.. ++. ... ....+
T Consensus 293 ~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-----~~~-e~~~~------------------------------------ 330 (467)
T TIGR01318 293 TAMDCVRTAIRLGAASVTCAYRRDEANMPG-----SRR-EVANA------------------------------------ 330 (467)
T ss_pred HHHHHHHHHHHcCCCeEEEEEecCcccCCC-----CHH-HHHHH------------------------------------
Confidence 9999998764 75 79999987653 221 111 11222
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEec---------C---------C--cEEecCEEEEeeccCcCccccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---------N---------G--HTHACDIVVSAIGVVPNSNIQV 281 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---------~---------g--~~~~~D~vi~a~G~~p~~~~~~ 281 (454)
++.||++++++.+.++..+++ +....+++. + | .++++|.||+|+|++|+...++
T Consensus 331 -----~~~GV~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~ 404 (467)
T TIGR01318 331 -----REEGVEFLFNVQPVYIECDED-GRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWL 404 (467)
T ss_pred -----HhcCCEEEecCCcEEEEECCC-CeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccc
Confidence 338999999999999975432 223223321 1 2 4699999999999999853267
Q ss_pred CCCCceecCCCceEec----cccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 282 HGTPFELAPDCGIGVN----ELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd----~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
...+++++++|++.|| ++++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...
T Consensus 405 ~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~----------~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 405 AGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGA----------DLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred cccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCc----------cHHHHHHHHHHHHHHHHHHH
Confidence 7777888888999999 67899999999999998743 35678999999999998753
No 69
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=3e-28 Score=254.49 Aligned_cols=279 Identities=18% Similarity=0.199 Sum_probs=186.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+||||||||++||..|++. |++|+|+|+.+..++...+. .+......++.....+.+.+ +++++.+.....+
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~~GG~l~~g-ip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~- 403 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPEIGGLLTFG-IPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD- 403 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCceeeec-CCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc-
Confidence 6899999999999999999998 89999999998876654432 11111112233333445555 8888755322111
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC----Cceeeeec-----cchHHHHHHH------hhcCCeEEEEcCch
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS----PHVITIRD-----TDSVAVLQEK------LKSAKKIVVIGNGG 145 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~----~~~~~~~~-----~~~~~~l~~~------~~~~~~vvVvG~G~ 145 (454)
+.+++ ....||+|++|||+. ++.++++ .+++.... ..+...+... ...+++++|||+|.
T Consensus 404 ----i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 478 (654)
T PRK12769 404 ----ISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGD 478 (654)
T ss_pred ----CCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcH
Confidence 22211 124699999999986 3445555 33332110 0000000000 01368999999999
Q ss_pred hHHHHHHHhc--CC-cEEEEEeCCCc-cccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 146 IATELVHELS--NV-DIVWVVKDKHI-SATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 146 ~g~e~a~~l~--g~-~V~~i~~~~~~-~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
+|+|+|..+. |+ +|+++.+++.. ++. .....+.+
T Consensus 479 ~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~------~~~e~~~~------------------------------------ 516 (654)
T PRK12769 479 TAMDCVRTALRHGASNVTCAYRRDEANMPG------SKKEVKNA------------------------------------ 516 (654)
T ss_pred HHHHHHHHHHHcCCCeEEEeEecCCCCCCC------CHHHHHHH------------------------------------
Confidence 9999997654 65 79999987643 221 11112222
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEe---------cCC-----------cEEecCEEEEeeccCcCccccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---------TNG-----------HTHACDIVVSAIGVVPNSNIQV 281 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---------~~g-----------~~~~~D~vi~a~G~~p~~~~~~ 281 (454)
++.||++++++.+.++..+++ +....|++ .+| .++++|.||+|+|+.|+...++
T Consensus 517 -----~~~Gv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~ 590 (654)
T PRK12769 517 -----REEGANFEFNVQPVALELNEQ-GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWL 590 (654)
T ss_pred -----HHcCCeEEeccCcEEEEECCC-CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccc
Confidence 338999999999999875332 22323332 112 2699999999999999853277
Q ss_pred CCCCceecCCCceEecc----ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 282 HGTPFELAPDCGIGVNE----LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd~----~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+..+++++.+|.|.||+ +++|+.|+|||+|||+.++ .++..|+.+|+.||.+|...+
T Consensus 591 ~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~----------~~vv~Ai~~Gr~AA~~I~~~L 651 (654)
T PRK12769 591 ESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGA----------DLVVTAMAEGRHAAQGIIDWL 651 (654)
T ss_pred cccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCC----------cHHHHHHHHHHHHHHHHHHHh
Confidence 77788888899999986 4899999999999998643 466789999999999997654
No 70
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.96 E-value=2.6e-28 Score=245.71 Aligned_cols=292 Identities=16% Similarity=0.206 Sum_probs=184.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|+|||||++|+++|..|++. +.+|+|+|+.+..++...+. .+......+......+++.+ +++++.+.....+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~--g~~V~v~e~~~~~gG~l~~g-ip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~- 219 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRA--GHTVTVFEREDRCGGLLMYG-IPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD- 219 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCCCCceeecc-CCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc-
Confidence 5899999999999999999998 89999999998765433321 11111112233344455666 9998866443222
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC----Cceeeeec-cchHHHH---------HHHhhcCCeEEEEcCchh
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS----PHVITIRD-TDSVAVL---------QEKLKSAKKIVVIGNGGI 146 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~----~~~~~~~~-~~~~~~l---------~~~~~~~~~vvVvG~G~~ 146 (454)
+.. ++....||+|++|||++ |+.++++ ++++.... ..+.... ......+++++|||+|++
T Consensus 220 ----~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~ 294 (485)
T TIGR01317 220 ----ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT 294 (485)
T ss_pred ----cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence 111 12235799999999998 8888887 23433211 1111100 011124799999999999
Q ss_pred HHHHHHHhc---CCcEEEEEeCCCccccccC----Ccchhhh-HHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccc
Q psy1545 147 ATELVHELS---NVDIVWVVKDKHISATFLD----PGAAEFF-QDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218 (454)
Q Consensus 147 g~e~a~~l~---g~~V~~i~~~~~~~~~~~d----~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (454)
|+|+|..+. +.+|+++++.+..+..... +.....+ .....
T Consensus 295 g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~-------------------------------- 342 (485)
T TIGR01317 295 GADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAH-------------------------------- 342 (485)
T ss_pred HHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHH--------------------------------
Confidence 999976553 4589999987765432111 1000000 00000
Q ss_pred ccccccCccCCceEE-EeCceEEEEEcCCCCccceEEEe--------cCC-----------cEEecCEEEEeeccC-cCc
Q psy1545 219 QVNLHGSSRDTKITI-EYSCEVERIVDSEDDTCNAYVKL--------TNG-----------HTHACDIVVSAIGVV-PNS 277 (454)
Q Consensus 219 ~~~~~~~l~~~gv~i-~~~~~v~~i~~~~~~~~~~~v~~--------~~g-----------~~~~~D~vi~a~G~~-p~~ 277 (454)
.+..+..|+.+ ++++.+.++..+++ +....+++ ++| .++++|.||+|+|.. |+.
T Consensus 343 ----~e~~~~~gv~~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~ 417 (485)
T TIGR01317 343 ----EEAAAHYGRDPREYSILTKEFIGDDE-GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQ 417 (485)
T ss_pred ----HhhhhhcCccceEEecCcEEEEEcCC-CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCcc
Confidence 01111235443 34556666654321 11222221 122 379999999999996 888
Q ss_pred ccccCCCCceecCCCceEe-ccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 278 NIQVHGTPFELAPDCGIGV-NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 278 ~~~~~~~~l~~~~~g~i~v-d~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
. ++...+++++.+|.+.+ |++++|+.|+|||+|||+..+ .+...|+.+|+.||.+|...+.++
T Consensus 418 ~-~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~AA~~i~~~L~g~ 481 (485)
T TIGR01317 418 I-LLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRKAAAAVDRYLMGS 481 (485)
T ss_pred c-cccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 88888888887888855 578999999999999998643 356679999999999998766553
No 71
>PRK13984 putative oxidoreductase; Provisional
Probab=99.96 E-value=1.9e-27 Score=247.06 Aligned_cols=277 Identities=20% Similarity=0.218 Sum_probs=180.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+|||+|+||+++|..|++. |++|+|+|+++..++...+. .+......+......+.+.+ +++++.+.....+
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~--G~~v~vie~~~~~gG~~~~~-i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~- 359 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATM--GYEVTVYESLSKPGGVMRYG-IPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD- 359 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCceEeec-CCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc-
Confidence 5799999999999999999998 89999999998776543321 11111112233334455566 8888766333221
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-Cceeeeecc-chHHHHHHHh-------hcCCeEEEEcCchhHHHHH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDT-DSVAVLQEKL-------KSAKKIVVIGNGGIATELV 151 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~-~~~~~l~~~~-------~~~~~vvVvG~G~~g~e~a 151 (454)
+..++ ....||+||+|||+. |+.++++ .....+.+. +.+..+...+ ..+++++|||||++|+|+|
T Consensus 360 ----~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 360 ----IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred ----CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHH
Confidence 11111 235799999999997 5777776 222222222 2223332221 1268999999999999999
Q ss_pred HHhc--C------CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccc
Q psy1545 152 HELS--N------VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 152 ~~l~--g------~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (454)
..+. + .+|+++...... . .++....+ +.+.
T Consensus 435 ~~l~r~~~~~~g~~~V~v~~~~r~~-~-~~~~~~~e-~~~~--------------------------------------- 472 (604)
T PRK13984 435 RSMARLQKMEYGEVNVKVTSLERTF-E-EMPADMEE-IEEG--------------------------------------- 472 (604)
T ss_pred HHHHhccccccCceEEEEeccccCc-c-cCCCCHHH-HHHH---------------------------------------
Confidence 9885 3 367876432111 1 12222111 1111
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEec-------------------CCcEEecCEEEEeeccCcCcccccCC-
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-------------------NGHTHACDIVVSAIGVVPNSNIQVHG- 283 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-------------------~g~~~~~D~vi~a~G~~p~~~~~~~~- 283 (454)
.+.||++++++.+.++..++ +....+++. +..++++|.|++|+|++|+.+ ++..
T Consensus 473 ---~~~GV~i~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~-~l~~~ 546 (604)
T PRK13984 473 ---LEEGVVIYPGWGPMEVVIEN--DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYS-YLPEE 546 (604)
T ss_pred ---HHcCCEEEeCCCCEEEEccC--CEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChh-hhhhh
Confidence 12799999998888876533 222223221 124799999999999999987 6543
Q ss_pred --CCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 284 --TPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 284 --~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
.++.+ ++|+|.||+++||++|+|||+|||+..+ ....|+.+|+.||.+|...+
T Consensus 547 ~~~~l~~-~~G~i~vd~~~~Ts~~gVfAaGD~~~~~-----------~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 547 LKSKLEF-VRGRILTNEYGQTSIPWLFAGGDIVHGP-----------DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred hccCccc-cCCeEEeCCCCccCCCCEEEecCcCCch-----------HHHHHHHHHHHHHHHHHHHh
Confidence 23544 4688999999999999999999998753 23469999999999997654
No 72
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.95 E-value=7.7e-27 Score=231.50 Aligned_cols=327 Identities=14% Similarity=0.138 Sum_probs=190.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
..+|+||||||||++||..|++..++++|+|+|+.+.+++...+...+.......+.......+.. +++++.+...
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~v--- 102 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTL--- 102 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEE---
Confidence 368999999999999999999744599999999999887765542211111111222222233344 7887654221
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCC-CCCCCC-CceeeeeccchHHHHH----------HHhhcCCeEEEEcCchhHH
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASP-RKIWYS-PHVITIRDTDSVAVLQ----------EKLKSAKKIVVIGNGGIAT 148 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~-~~~~~~~~~~~~~~l~----------~~~~~~~~vvVvG~G~~g~ 148 (454)
.+.+++++- ...||+||||||+.+ +.+++| .+...+.+..++.... ..+..+++++|||+|++|+
T Consensus 103 --g~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAl 179 (491)
T PLN02852 103 --GRDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVAL 179 (491)
T ss_pred --CccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHH
Confidence 122444333 347999999999985 667777 2222333333332211 1123479999999999999
Q ss_pred HHHHHhc----------------------C-CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 149 ELVHELS----------------------N-VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 149 e~a~~l~----------------------g-~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
|+|..|. + .+|+++.|+......+-..++.++. +...-+.......+.....
T Consensus 180 D~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~-----~l~~~~~~~~~~~~~~~~~ 254 (491)
T PLN02852 180 DCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELL-----GLKNVRVRIKEADLTLSPE 254 (491)
T ss_pred HHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHh-----ccCCCceeechhhhccccc
Confidence 9998763 2 3699999887544332222222211 0000000000000000000
Q ss_pred CCCCCCCCCcccccccccc-C---------ccCCceEEEeCceEEEEEcCCC-CccceEEEec-----------------
Q psy1545 206 GEKGPSLGPDWHTQVNLHG-S---------SRDTKITIEYSCEVERIVDSED-DTCNAYVKLT----------------- 257 (454)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~-~---------l~~~gv~i~~~~~v~~i~~~~~-~~~~~~v~~~----------------- 257 (454)
..-.......-...+.+.. . -...+|.+++.....+|..+++ .+.+..+++.
T Consensus 255 ~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~ 334 (491)
T PLN02852 255 DEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVG 334 (491)
T ss_pred hhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCC
Confidence 0000000000000000000 0 0126899999998888874211 0223334332
Q ss_pred CC--cEEecCEEEEeeccC--cCcc-cccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHH
Q psy1545 258 NG--HTHACDIVVSAIGVV--PNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQ 332 (454)
Q Consensus 258 ~g--~~~~~D~vi~a~G~~--p~~~-~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~ 332 (454)
+| ++++||.||.++|++ |... ++-...++..+.+|+|.+|+.++|+.|+|||+|||..++ ..+...
T Consensus 335 tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp---------~gvI~t 405 (491)
T PLN02852 335 TGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGP---------TGIIGT 405 (491)
T ss_pred CCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCC---------CCeeee
Confidence 23 368999999999998 4443 122334566788899999988899999999999999765 235556
Q ss_pred HHHHHHHHHhhhcCCC
Q psy1545 333 AKHMGTYAAKCMVGAV 348 (454)
Q Consensus 333 A~~~g~~aa~~i~~~~ 348 (454)
++.+|+.++.+|...+
T Consensus 406 ~~~dA~~ta~~i~~d~ 421 (491)
T PLN02852 406 NLTCAEETVASIAEDL 421 (491)
T ss_pred cHhhHHHHHHHHHHHH
Confidence 8899999999998754
No 73
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.95 E-value=8.6e-27 Score=242.46 Aligned_cols=282 Identities=20% Similarity=0.229 Sum_probs=186.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
..+|+|||||++|+++|..|++. |++|+++|+.+.+++...+.-....+ +........+.+.. +++++.+....
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~~GG~l~~gip~~~l-~~~~~~~~~~~~~~~Gv~~~~~~~v~-- 384 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPEIGGMLTFGIPPFKL-DKTVLSQRREIFTAMGIDFHLNCEIG-- 384 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCCCCCeeeccCCcccC-CHHHHHHHHHHHHHCCeEEEcCCccC--
Confidence 36899999999999999999998 88999999999877655442111111 12222333445555 88887553221
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCC-CCCCCC----Cceeeeec-----cchHHHHHH------HhhcCCeEEEEcCc
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASP-RKIWYS----PHVITIRD-----TDSVAVLQE------KLKSAKKIVVIGNG 144 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~----~~~~~~~~-----~~~~~~l~~------~~~~~~~vvVvG~G 144 (454)
+.+.+.+ ....||.+++|||+.+ +.++++ ++++.... ..+...+.+ ....+++++|+|+|
T Consensus 385 ---~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG 460 (639)
T PRK12809 385 ---RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGG 460 (639)
T ss_pred ---CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCc
Confidence 1122222 2356999999999974 445555 23332100 001110100 01137899999999
Q ss_pred hhHHHHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 145 GIATELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 145 ~~g~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
.+++++|..+. |+ +||++.|+++... ... ...+. ..
T Consensus 461 ~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~---~~~-~~e~~-~a------------------------------------ 499 (639)
T PRK12809 461 DTTMDCLRTSIRLNAASVTCAYRRDEVSM---PGS-RKEVV-NA------------------------------------ 499 (639)
T ss_pred HHHHHHHHHHHHcCCCeEEEeeecCcccC---CCC-HHHHH-HH------------------------------------
Confidence 99999997653 64 8999998764421 111 11111 11
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEe---c------C---------C--cEEecCEEEEeeccCcCccccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---T------N---------G--HTHACDIVVSAIGVVPNSNIQV 281 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~------~---------g--~~~~~D~vi~a~G~~p~~~~~~ 281 (454)
++.||++++++.++++..+++ +....+++ . + | .++++|.||+|+|+.|+...++
T Consensus 500 -----~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~ 573 (639)
T PRK12809 500 -----REEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWL 573 (639)
T ss_pred -----HHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccc
Confidence 237999999999999975432 22222221 1 1 2 3689999999999999753267
Q ss_pred CCCCceecCCCceEecc----ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 282 HGTPFELAPDCGIGVNE----LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 282 ~~~~l~~~~~g~i~vd~----~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
+..+++++++|.|.+|+ ++||+.|+|||+|||+.++ .++..|+.+|+.||.+|...+.
T Consensus 574 ~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i~~~l~ 635 (639)
T PRK12809 574 QGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDMLTLFD 635 (639)
T ss_pred cccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888889999986 4889999999999998643 4667899999999999986543
No 74
>KOG0404|consensus
Probab=99.95 E-value=2.8e-26 Score=195.00 Aligned_cols=260 Identities=19% Similarity=0.184 Sum_probs=193.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc---c-c-------cccccccccccccccchhhhHHHHHhc-CcE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI---V-K-------AVTKTVPVTKLLSDITVEETDANKFEG-LCT 70 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~---~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~ 70 (454)
.+|+|||+|||+.+||+++++. ..+-+|+|-.-. . + ...++|.|+..+...++.+...++-.+ +.+
T Consensus 9 e~v~IiGSGPAa~tAAiYaara--elkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARA--ELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhc--ccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 4799999999999999999998 778888886311 1 1 134667777777777777777666666 999
Q ss_pred EEcceEEEEeCcccEEEe-ccCcEEEecEEEEecCCCCCCCCCC-C-ce-e-----eeeccch-HHHHHHHhhcCCeEEE
Q psy1545 71 VIVDTVAAIDPRVNCVIT-EKQNRIKYKTLCICTGASPRKIWYS-P-HV-I-----TIRDTDS-VAVLQEKLKSAKKIVV 140 (454)
Q Consensus 71 ~~~~~v~~i~~~~~~v~~-~~g~~i~~d~lviAtG~~p~~~~~~-~-~~-~-----~~~~~~~-~~~l~~~~~~~~~vvV 140 (454)
++...|..++...+...+ .+.+.+.+|.+|+|||+..+...+| . .. + +.+...| +..+ .+.|.++|
T Consensus 87 i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapi----frnk~laV 162 (322)
T KOG0404|consen 87 IITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPI----FRNKPLAV 162 (322)
T ss_pred eeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchh----hcCCeeEE
Confidence 999999999987763332 2566899999999999987776665 1 11 1 1111112 2222 24799999
Q ss_pred EcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCcccc
Q psy1545 141 IGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218 (454)
Q Consensus 141 vG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 218 (454)
||||.+++|-|..|. +.+|++++|++.+.. +..++++..
T Consensus 163 IGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA-------s~~Mq~ra~-------------------------------- 203 (322)
T KOG0404|consen 163 IGGGDSAMEEALFLTKYASKVYIIHRRDHFRA-------SKIMQQRAE-------------------------------- 203 (322)
T ss_pred EcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH-------HHHHHHHHh--------------------------------
Confidence 999999999999997 899999999987754 233333332
Q ss_pred ccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-cCC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceE
Q psy1545 219 QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIG 295 (454)
Q Consensus 219 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~ 295 (454)
++.+|++++|+.+.+...++..-..+.++- ..| +.++++-+++++|..|++. +++. .+++|++|+|+
T Consensus 204 --------~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~-~l~g-qve~d~~GYi~ 273 (322)
T KOG0404|consen 204 --------KNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATK-FLKG-QVELDEDGYIV 273 (322)
T ss_pred --------cCCCeEEEechhhhhhccCcccccceEEEecccCcccccccceeEEEecCCchhh-HhcC-ceeeccCceEE
Confidence 447999999999888877642111223322 223 6799999999999999999 8887 59999999999
Q ss_pred ecc-ccccccCceeecCcccccC
Q psy1545 296 VNE-LMQTSISNVYAAGDVCTPS 317 (454)
Q Consensus 296 vd~-~~~t~~~~Iya~GD~~~~~ 317 (454)
+-+ .-.||+|++||+||+....
T Consensus 274 t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 274 TRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred eccCcccccccceeeccccchHH
Confidence 984 5669999999999998743
No 75
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.94 E-value=9.1e-26 Score=244.60 Aligned_cols=275 Identities=16% Similarity=0.119 Sum_probs=186.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc-ccccccccchhhhHHHHHhc--CcEEEc-ceEE
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP-VTKLLSDITVEETDANKFEG--LCTVIV-DTVA 77 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~i~~~~-~~v~ 77 (454)
.+||+||||||||++||..+++. |.+|+|+|+++..++...+.. ........++.....+.+.. +++++. .+|.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~--G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~ 240 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARA--GARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF 240 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence 36899999999999999999997 999999999887765443322 11112223343444555554 588875 4777
Q ss_pred EEeCcccEEEec----------c----C--cEEEecEEEEecCCCCCCCCCC-CceeeeeccchHHHHHHH--hhcCCeE
Q psy1545 78 AIDPRVNCVITE----------K----Q--NRIKYKTLCICTGASPRKIWYS-PHVITIRDTDSVAVLQEK--LKSAKKI 138 (454)
Q Consensus 78 ~i~~~~~~v~~~----------~----g--~~i~~d~lviAtG~~p~~~~~~-~~~~~~~~~~~~~~l~~~--~~~~~~v 138 (454)
.+.......... + + ..+.||+||||||++|+.|+++ .....+.+...+..+.+. ...++++
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~V 320 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRI 320 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeE
Confidence 775532211110 0 1 1689999999999999998887 122222233333322211 2247999
Q ss_pred EEEcCchhHHHHHHHhc--CC-cEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCc
Q psy1545 139 VVIGNGGIATELVHELS--NV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPD 215 (454)
Q Consensus 139 vVvG~G~~g~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (454)
+|+|+|++++|+|..|. |. .|+++++.+.+. ..+.+.+
T Consensus 321 vViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L------------------------------ 361 (985)
T TIGR01372 321 VVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEA------------------------------ 361 (985)
T ss_pred EEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHH------------------------------
Confidence 99999999999999986 74 578887654332 2233344
Q ss_pred cccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec----CCcEEecCEEEEeeccCcCcccccCCCCcee--c
Q psy1545 216 WHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT----NGHTHACDIVVSAIGVVPNSNIQVHGTPFEL--A 289 (454)
Q Consensus 216 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~----~g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~--~ 289 (454)
++.||++++++.+.++..++. ...|++. ++++++||.|+++.|++|+++ ++...+..+ +
T Consensus 362 -----------~~~GV~i~~~~~v~~i~g~~~---v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~-L~~~lg~~~~~~ 426 (985)
T TIGR01372 362 -----------RELGIEVLTGHVVAATEGGKR---VSGVAVARNGGAGQRLEADALAVSGGWTPVVH-LFSQRGGKLAWD 426 (985)
T ss_pred -----------HHcCCEEEcCCeEEEEecCCc---EEEEEEEecCCceEEEECCEEEEcCCcCchhH-HHHhcCCCeeec
Confidence 338999999999999987542 2334443 447899999999999999998 777665443 2
Q ss_pred CC--CceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 290 PD--CGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 290 ~~--g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
+. +++. .|+.|+||++|||++. .....|..+|+.||..++..+
T Consensus 427 ~~~~~~~~-----~t~v~gVyaaGD~~g~-----------~~~~~A~~eG~~Aa~~i~~~l 471 (985)
T TIGR01372 427 AAIAAFLP-----GDAVQGCILAGAANGL-----------FGLAAALADGAAAGAAAARAA 471 (985)
T ss_pred cccCceec-----CCCCCCeEEeeccCCc-----------cCHHHHHHHHHHHHHHHHHHc
Confidence 11 1111 2789999999999864 345679999999999886443
No 76
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-27 Score=213.08 Aligned_cols=274 Identities=22% Similarity=0.258 Sum_probs=190.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----cccchhhhHHHHHhc-CcEEEcc-e
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----SDITVEETDANKFEG-LCTVIVD-T 75 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~i~~~~~-~ 75 (454)
|||+||||||||.+||.+.+|. |.+.=++ .+.+.+...........+ ....+.....+..++ .+++++. +
T Consensus 212 yDVLvVGgGPAgaaAAiYaARK--GiRTGl~-aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qr 288 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARK--GIRTGLV-AERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQR 288 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhh--cchhhhh-hhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhh
Confidence 8999999999999999999998 7665444 222332222111111111 111222333334444 7777754 7
Q ss_pred EEEEeCc-----ccEEEeccCcEEEecEEEEecCCCCCCCCCC-------CceeeeeccchHHHHHHHhhcCCeEEEEcC
Q psy1545 76 VAAIDPR-----VNCVITEKQNRIKYKTLCICTGASPRKIWYS-------PHVITIRDTDSVAVLQEKLKSAKKIVVIGN 143 (454)
Q Consensus 76 v~~i~~~-----~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~ 143 (454)
++.+.+. -..|++++|..+.++.+|||||++=+...+| .++- ++...|- .+.++|++.||||
T Consensus 289 a~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVa-yCPHCDG-----PLF~gK~VAVIGG 362 (520)
T COG3634 289 ASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVA-YCPHCDG-----PLFKGKRVAVIGG 362 (520)
T ss_pred hhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCee-eCCCCCC-----cccCCceEEEECC
Confidence 7777663 2378899999999999999999987766666 2222 2222222 2235999999999
Q ss_pred chhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 144 GGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 144 G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
|++|+|.|..|+ -..||+++-.+.+.. ...+++++..
T Consensus 363 GNSGvEAAIDLAGiv~hVtllEF~~eLkA-------D~VLq~kl~s---------------------------------- 401 (520)
T COG3634 363 GNSGVEAAIDLAGIVEHVTLLEFAPELKA-------DAVLQDKLRS---------------------------------- 401 (520)
T ss_pred CcchHHHHHhHHhhhheeeeeecchhhhh-------HHHHHHHHhc----------------------------------
Confidence 999999999998 468999975443322 3455555543
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEe
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGV 296 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~v 296 (454)
-.++++++|..-+++.++++ .+..+.+. +| ..++-+-|++-+|..||++ |++.. +++++.|.|.|
T Consensus 402 ------l~Nv~ii~na~Ttei~Gdg~--kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~-WLkg~-vel~~rGEIiv 471 (520)
T COG3634 402 ------LPNVTIITNAQTTEVKGDGD--KVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTE-WLKGA-VELNRRGEIIV 471 (520)
T ss_pred ------CCCcEEEecceeeEEecCCc--eecceEEEeccCCceeEEEeeeeEEEEecccChh-Hhhch-hhcCcCccEEE
Confidence 16899999999999998863 23444443 34 4566777999999999999 99987 89999999999
Q ss_pred ccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhc
Q psy1545 297 NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 297 d~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
|....||+|+|||+|||+..++. ..-.|+.+|..|+-+..
T Consensus 472 D~~g~TsvpGvFAAGD~T~~~yK---------QIIIamG~GA~AaL~AF 511 (520)
T COG3634 472 DARGETNVPGVFAAGDCTTVPYK---------QIIIAMGEGAKASLSAF 511 (520)
T ss_pred ecCCCcCCCceeecCcccCCccc---------eEEEEecCcchhhhhhh
Confidence 99999999999999999987643 22334555555554433
No 77
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.93 E-value=7.1e-25 Score=225.70 Aligned_cols=282 Identities=19% Similarity=0.223 Sum_probs=182.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|+|||+||+|+++|..|++. |.+|+++|+.+..++...+. .+....+.++.....+.+.+ ++++..+.....+.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~~~GG~l~~g-ip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGPKLGGMMRYG-IPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCeeeec-CCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 5799999999999999999998 88999999998876544331 11111112223333444455 88876543221111
Q ss_pred cccEEEeccCcEEEecEEEEecCCCC-CCCCCC-CceeeeeccchHHHH-HH--HhhcCCeEEEEcCchhHHHHHHHhc-
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASP-RKIWYS-PHVITIRDTDSVAVL-QE--KLKSAKKIVVIGNGGIATELVHELS- 155 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p-~~~~~~-~~~~~~~~~~~~~~l-~~--~~~~~~~vvVvG~G~~g~e~a~~l~- 155 (454)
.. +.....||.+++|||+.+ ..+.++ ..........++..- .. ....+++++|+|+|.++++++..+.
T Consensus 215 ~~------~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~ 288 (564)
T PRK12771 215 TL------EQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARR 288 (564)
T ss_pred CH------HHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHH
Confidence 10 001125899999999874 334444 111111121122111 00 1123789999999999999998654
Q ss_pred -C-CcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEE
Q psy1545 156 -N-VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233 (454)
Q Consensus 156 -g-~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i 233 (454)
+ .+|+++.|.+... +. .....+ ... .+.||++
T Consensus 289 lga~~v~ii~r~~~~~---~~-~~~~~~-~~a-----------------------------------------~~~GVki 322 (564)
T PRK12771 289 LGAEEVTIVYRRTRED---MP-AHDEEI-EEA-----------------------------------------LREGVEI 322 (564)
T ss_pred cCCCEEEEEEecCccc---CC-CCHHHH-HHH-----------------------------------------HHcCCEE
Confidence 5 6799998865321 11 111111 111 2379999
Q ss_pred EeCceEEEEEcCCCCccc---eEEEe----cC-------C--cEEecCEEEEeeccCcCcccccCC-CCceecCCCceEe
Q psy1545 234 EYSCEVERIVDSEDDTCN---AYVKL----TN-------G--HTHACDIVVSAIGVVPNSNIQVHG-TPFELAPDCGIGV 296 (454)
Q Consensus 234 ~~~~~v~~i~~~~~~~~~---~~v~~----~~-------g--~~~~~D~vi~a~G~~p~~~~~~~~-~~l~~~~~g~i~v 296 (454)
++++.+.++..++++... ..+.. ++ | .++++|.||+|+|..|+.. ++.. .++. +++|+|.|
T Consensus 323 ~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~-~~~~~~gl~-~~~G~i~v 400 (564)
T PRK12771 323 NWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSA-GLESVPGVE-VGRGVVQV 400 (564)
T ss_pred EecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchh-hhhhccCcc-cCCCCEEe
Confidence 999999999765421111 11221 11 2 4799999999999999987 7764 5676 77899999
Q ss_pred cc-ccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCC
Q psy1545 297 NE-LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351 (454)
Q Consensus 297 d~-~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~ 351 (454)
|+ +++|+.|+|||+|||+..+ .++..|+.+|+.||.+|...+.++
T Consensus 401 d~~~~~ts~~~Vfa~GD~~~g~----------~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 401 DPNFMMTGRPGVFAGGDMVPGP----------RTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred CCCCccCCCCCEEeccCcCCCc----------hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 98 7889999999999998643 467789999999999998766554
No 78
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=7.8e-24 Score=210.94 Aligned_cols=270 Identities=12% Similarity=0.167 Sum_probs=176.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccc---------------------------c---c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVT---------------------------K---L 51 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~---------------------------~---~ 51 (454)
.++|+|||||++||+||++|++. |.+++++|+++..++.|++..-. . .
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~--G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE--GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc--CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 47899999999999999999998 89999999998887777542100 0 0
Q ss_pred ccc----------------cchhhhHHHHH---hc--CcE--E-EcceEEEEeCccc--EEEeccC--c--EEEecEEEE
Q psy1545 52 LSD----------------ITVEETDANKF---EG--LCT--V-IVDTVAAIDPRVN--CVITEKQ--N--RIKYKTLCI 101 (454)
Q Consensus 52 ~~~----------------~~~~~~~~~~~---~~--~i~--~-~~~~v~~i~~~~~--~v~~~~g--~--~i~~d~lvi 101 (454)
+++ +.-..+..+++ .+ ++. + +..+|+.+++... .|++.++ . +..||+||+
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIv 167 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVV 167 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEE
Confidence 000 10112223333 32 555 3 3568998886543 4554332 2 467999999
Q ss_pred ecC--CCCCCCCCC------CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc
Q psy1545 102 CTG--ASPRKIWYS------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT 171 (454)
Q Consensus 102 AtG--~~p~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~ 171 (454)
||| +.|+.|+++ +...+.+...+...+ ++|+|+|||+|.+|+|+|..|. +.+|+++.|+..+..
T Consensus 168 AtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~-----~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~- 241 (461)
T PLN02172 168 CNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPF-----KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT- 241 (461)
T ss_pred eccCCCCCcCCCCCCcccCCceEEEecccCCcccc-----CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc-
Confidence 999 678888877 223344444444333 4899999999999999999997 889999998653211
Q ss_pred ccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccc
Q psy1545 172 FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCN 251 (454)
Q Consensus 172 ~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~ 251 (454)
. ..+ ......+..+..|..+..++
T Consensus 242 ---------~-~~~-----------------------------------------~~~~~~v~~~~~I~~~~~~g----- 265 (461)
T PLN02172 242 ---------Y-EKL-----------------------------------------PVPQNNLWMHSEIDTAHEDG----- 265 (461)
T ss_pred ---------c-ccC-----------------------------------------cCCCCceEECCcccceecCC-----
Confidence 0 000 00122334455565554433
Q ss_pred eEEEecCCcEEecCEEEEeeccCcCcccccCCCC-ceecCCCceEeccc-cccc-cCceeecCcccccCCccccchhhcc
Q psy1545 252 AYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTP-FELAPDCGIGVNEL-MQTS-ISNVYAAGDVCTPSWDLAKQWFQMR 328 (454)
Q Consensus 252 ~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~-l~~~~~g~i~vd~~-~~t~-~~~Iya~GD~~~~~~~~~~~~~~~~ 328 (454)
.|++.||+.+++|.||+|||++++.+ |++..+ +.++++.-...=.+ +-.. .|+++.+|=.... .
T Consensus 266 -~V~f~DG~~~~~D~Ii~~TGy~~~~p-fL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~ 332 (461)
T PLN02172 266 -SIVFKNGKVVYADTIVHCTGYKYHFP-FLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------I 332 (461)
T ss_pred -eEEECCCCCccCCEEEECCcCCcccc-ccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------c
Confidence 38899998899999999999999998 876533 33322211011111 1233 4899999965321 2
Q ss_pred ChHHHHHHHHHHHhhhcCCC
Q psy1545 329 LWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 329 ~~~~A~~~g~~aa~~i~~~~ 348 (454)
..+.+..||+++|+-+.|+.
T Consensus 333 ~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 333 QFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred CchhHHHHHHHHHHHHcCCC
Confidence 45578999999999998865
No 79
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.88 E-value=3.2e-21 Score=194.64 Aligned_cols=318 Identities=15% Similarity=0.248 Sum_probs=153.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccc----------------ccc---ccccc-------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPV----------------TKL---LSDIT------- 56 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~----------------~~~---~~~~~------- 56 (454)
.+|+|||||++||++|+.|.+. |.+++++|+++..++.|.+... ++. ++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~--g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~ 79 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE--GLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPD 79 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT--T-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSS
T ss_pred CEEEEECccHHHHHHHHHHHHC--CCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCC
Confidence 5799999999999999999998 9999999999999988864210 000 11111
Q ss_pred --hhh---hHHHHHhc--CcE--E-EcceEEEEeCc-------ccEEEecc-Cc--EEEecEEEEecCC--CCCCCC--C
Q psy1545 57 --VEE---TDANKFEG--LCT--V-IVDTVAAIDPR-------VNCVITEK-QN--RIKYKTLCICTGA--SPRKIW--Y 112 (454)
Q Consensus 57 --~~~---~~~~~~~~--~i~--~-~~~~v~~i~~~-------~~~v~~~~-g~--~i~~d~lviAtG~--~p~~~~--~ 112 (454)
-.. ++++.|.+ ++. + ++.+|+.++.. ...|++.+ |+ +-.||+||+|||. .|+.|. +
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 112 23333333 332 1 34577777542 23565543 32 4579999999996 477774 4
Q ss_pred C------CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC-CccccccCCc-chhhh-
Q psy1545 113 S------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK-HISATFLDPG-AAEFF- 181 (454)
Q Consensus 113 ~------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~-~~~~~~~d~~-~~~~~- 181 (454)
+ +.+.+.....+...+ ++|||+|||+|.+|+++|.+++ ..+|++..|+. +++++..+.. ..+.+
T Consensus 160 ~G~e~F~G~i~HS~~yr~~~~f-----~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~ 234 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRDPEPF-----KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVF 234 (531)
T ss_dssp CTGGGHCSEEEEGGG--TGGGG-----TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--------------------
T ss_pred hhhhcCCeeEEccccCcChhhc-----CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccccccc
Confidence 4 345554444444433 4899999999999999999997 78999999765 4455433211 11111
Q ss_pred HHHhhc---cCCCC--hhhhhh-hcccccCCCCCCCCCCccc---cc----cccccCccCCceEEEeCceEEEEEcCCCC
Q psy1545 182 QDSINK---TNTAK--PETIFK-RMRYNTGGEKGPSLGPDWH---TQ----VNLHGSSRDTKITIEYSCEVERIVDSEDD 248 (454)
Q Consensus 182 ~~~l~~---~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~~~---~~----~~~~~~l~~~gv~i~~~~~v~~i~~~~~~ 248 (454)
..++.. ...+. .+++.. .+...+... ...+.|... +. -.+...+....|++.. .|.++.++
T Consensus 235 ~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~-~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~--~I~~~~~~--- 308 (531)
T PF00743_consen 235 STRFSSFLQKNLPESLSNWLLEKKLNKRFDHE-NYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKP--DIKRFTEN--- 308 (531)
T ss_dssp -----------------------------------------------------------------EE---EEEE-SS---
T ss_pred cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc--cccccccc---
Confidence 111100 00000 011110 111000000 000111100 00 0012233445566653 47777654
Q ss_pred ccceEEEecCCcEE-ecCEEEEeeccCcCcccccCCCCceecCCCceEeccc-ccc--ccCceeecCcccccCCccccch
Q psy1545 249 TCNAYVKLTNGHTH-ACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL-MQT--SISNVYAAGDVCTPSWDLAKQW 324 (454)
Q Consensus 249 ~~~~~v~~~~g~~~-~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~-~~t--~~~~Iya~GD~~~~~~~~~~~~ 324 (454)
.+.++||+++ ++|.||+|||++...+ |++..-+... ++.+..-.+ +-. ..|++..+|=+-...
T Consensus 309 ----~v~F~DGs~~e~vD~II~~TGY~~~fp-FL~~~~~~~~-~~~~~LYk~vfp~~~~~ptLafIG~~~~~g------- 375 (531)
T PF00743_consen 309 ----SVIFEDGSTEEDVDVIIFCTGYKFSFP-FLDESLIKVD-DNRVRLYKHVFPPNLDHPTLAFIGLVQPFG------- 375 (531)
T ss_dssp ----EEEETTSEEEEE-SEEEE---EE---T-TB-TTTT-S--SSSSSEETTTEETETTSTTEEESS-SBSSS-------
T ss_pred ----ccccccccccccccccccccccccccc-cccccccccc-cccccccccccccccccccccccccccccc-------
Confidence 3789999775 6999999999999988 8886544432 333322222 212 358899999763211
Q ss_pred hhccChHHHHHHHHHHHhhhcCCCC
Q psy1545 325 FQMRLWTQAKHMGTYAAKCMVGAVK 349 (454)
Q Consensus 325 ~~~~~~~~A~~~g~~aa~~i~~~~~ 349 (454)
...+.+..||+++|+-+.|..+
T Consensus 376 ---~~fp~~ElQArw~a~v~sG~~~ 397 (531)
T PF00743_consen 376 ---SIFPIFELQARWAARVFSGRVK 397 (531)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSS-
T ss_pred ---cccccccccccccccccccccc
Confidence 2345689999999999988653
No 80
>KOG3851|consensus
Probab=99.88 E-value=3.4e-22 Score=178.91 Aligned_cols=305 Identities=14% Similarity=0.151 Sum_probs=200.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
+++|+|||||.+|++.|..+.+.-+..+|.++|+.+.+.+...+...+..+...+-..+....+.. +..++++.|..++
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f~ 118 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEFN 118 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhcC
Confidence 478999999999999999998876677999999999887776666665555544444433344433 7888889999999
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC--------CceeeeeccchHHHHHHHhhc---CCe--------EEEE
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS--------PHVITIRDTDSVAVLQEKLKS---AKK--------IVVI 141 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~--------~~~~~~~~~~~~~~l~~~~~~---~~~--------vvVv 141 (454)
|++++|.+.+|++|.||++|||+|-+-+...|+ +++-+..+....++..+.+.+ +.- +=..
T Consensus 119 P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCA 198 (446)
T KOG3851|consen 119 PDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCA 198 (446)
T ss_pred CCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccC
Confidence 999999999999999999999999876655444 445445555555555444432 211 2223
Q ss_pred cCchhHHHHHHHhc---C--CcEEEEEe--CCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 142 GNGGIATELVHELS---N--VDIVWVVK--DKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 142 G~G~~g~e~a~~l~---g--~~V~~i~~--~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
|+-.-.+-++..+. | .++.++.. -+.++. -...++.+++.
T Consensus 199 GAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFg---Vk~Y~~AL~k~------------------------------ 245 (446)
T KOG3851|consen 199 GAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFG---VKHYADALEKV------------------------------ 245 (446)
T ss_pred CCchhhhhhhHHHHHHhCccccccEEEecCccceec---HHHHHHHHHHH------------------------------
Confidence 44333333333331 2 22333322 112211 01112222222
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-C--cEEecCEEEEeeccCcCcccccCCCCceecCC
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-G--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPD 291 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~ 291 (454)
.++++|++.......++..+++ ..+--.+++ | .+++++++-+....++.. ++....+. |..
T Consensus 246 -----------~~~rni~vn~krnLiEV~~~~~--~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe--~l~~s~~a-dkt 309 (446)
T KOG3851|consen 246 -----------IQERNITVNYKRNLIEVRTNDR--KAVFENLDKPGVTEEIEYSLLHVTPPMSTPE--VLANSDLA-DKT 309 (446)
T ss_pred -----------HHhcceEeeeccceEEEeccch--hhHHHhcCCCCceeEEeeeeeeccCCCCChh--hhhcCccc-Ccc
Confidence 2458899988888888887663 111111222 5 568899988887776644 56666654 788
Q ss_pred CceEecc-ccc-cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCCCCCcceeccceeeee
Q psy1545 292 CGIGVNE-LMQ-TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFT 363 (454)
Q Consensus 292 g~i~vd~-~~~-t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~ 363 (454)
|++.||. .+| +.+||||++|||.+.|. .+.+..+..|..++-+|+..-..|+.+...|.....|
T Consensus 310 GfvdVD~~TlQs~kypNVFgiGDc~n~Pn--------sKTaAAvaaq~~vv~~nl~~~m~g~~pt~~ydGYtSC 375 (446)
T KOG3851|consen 310 GFVDVDQSTLQSKKYPNVFGIGDCMNLPN--------SKTAAAVAAQSPVVDKNLTQVMQGKRPTMKYDGYTSC 375 (446)
T ss_pred cceecChhhhccccCCCceeeccccCCCc--------hhhHHHHHhcCchhhhhHHHHhcCCCcceeecCcccC
Confidence 9999994 577 78999999999998652 2345556788888889988877777665555543334
No 81
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.84 E-value=3.6e-20 Score=182.19 Aligned_cols=280 Identities=20% Similarity=0.211 Sum_probs=180.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+|.||||||||+++|..|.+. |++|+++|+.+..++...+. .+......++..+..+.+.+ +++|+.+.....+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~GGll~yG-IP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~- 199 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYG-IPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD- 199 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCceeEEec-CchhhccchHHHHHHHHHHHcCeEEEEcceECCc-
Confidence 4799999999999999999998 99999999999888766553 33333445666677777777 9888755333222
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHH--hh----------cCCeEEEEcCchhH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEK--LK----------SAKKIVVIGNGGIA 147 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~--~~----------~~~~vvVvG~G~~g 147 (454)
++++. -.-.||.+++|||+. |+..+++ .+.-.++...+++.-... +. .+++++|||+|.++
T Consensus 200 ----it~~~-L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta 274 (457)
T COG0493 200 ----ITLEE-LLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTA 274 (457)
T ss_pred ----CCHHH-HHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCH
Confidence 32221 133469999999984 7777777 333333343333322111 11 23899999999999
Q ss_pred HHHHHHhc--CC-cEEEEEeCCCccccccCCc---chhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCCccccccc
Q psy1545 148 TELVHELS--NV-DIVWVVKDKHISATFLDPG---AAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221 (454)
Q Consensus 148 ~e~a~~l~--g~-~V~~i~~~~~~~~~~~d~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (454)
++++.... |+ +|+.+.+...-.. ..+. ......+
T Consensus 275 ~D~~~t~~r~Ga~~v~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------------------------- 314 (457)
T COG0493 275 MDCAGTALRLGAKSVTCFYREDRDDE--TNEWPTWAAQLEVR-------------------------------------- 314 (457)
T ss_pred HHHHHHHhhcCCeEEEEecccccccc--CCcccccchhhhhh--------------------------------------
Confidence 99996654 66 6777652221100 0100 0111111
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEE--------------------ecCC-cEEecCEEEEeeccCcCcccc
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVK--------------------LTNG-HTHACDIVVSAIGVVPNSNIQ 280 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~--------------------~~~g-~~~~~D~vi~a~G~~p~~~~~ 280 (454)
....+|+...+.....++..+++ ++...+. ..+. ..+++|.|+.|+|+.++....
T Consensus 315 ---~a~eeg~~~~~~~~~~~~~~~e~-GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~ 390 (457)
T COG0493 315 ---SAGEEGVERLPFVQPKAFIGNEG-GRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDG 390 (457)
T ss_pred ---hhhhcCCcccccCCceeEeecCC-CcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccc
Confidence 11335555555555555554332 1111111 1111 468899999999999886512
Q ss_pred cC-CCCceecCCCceEecccc-ccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhc
Q psy1545 281 VH-GTPFELAPDCGIGVNELM-QTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 281 ~~-~~~l~~~~~g~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
.. ..++..+..|.+.+|+.+ +|+.|++||.||+..+. .+...|+.+|+.+|+.|-
T Consensus 391 ~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 391 LLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKAID 447 (457)
T ss_pred cccccccccCCCCceecccccccccCCCeeeCceeccch----------hhhhhHHhhchHHHHhhh
Confidence 22 225677888999999998 89999999999998753 355679999999998876
No 82
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.83 E-value=3.4e-20 Score=177.72 Aligned_cols=268 Identities=16% Similarity=0.164 Sum_probs=144.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccc--------cccccc-------cccch----------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV--------PVTKLL-------SDITV---------- 57 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~--------~~~~~~-------~~~~~---------- 57 (454)
+|+|+||.||++|+.|..|.+.. ..++..+|+.+.+.+..... ++-+.+ +++.+
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred eeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 79999999999999999999983 58999999987654322210 000000 00100
Q ss_pred ---------------hhhHHHHHhc--Cc-EEEcceEEEEeCcc------cEEEec----cCcEEEecEEEEecCCCCCC
Q psy1545 58 ---------------EETDANKFEG--LC-TVIVDTVAAIDPRV------NCVITE----KQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 58 ---------------~~~~~~~~~~--~i-~~~~~~v~~i~~~~------~~v~~~----~g~~i~~d~lviAtG~~p~~ 109 (454)
...+.++..+ .- -.+..+|+.|++.. ..|.+. +++.+.++.||+|||..|+.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence 0133444444 32 22456888887654 255552 34689999999999999998
Q ss_pred CCCC---C-ceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--C--CcEEEEEeCCCccccccCCcchhhh
Q psy1545 110 IWYS---P-HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--N--VDIVWVVKDKHISATFLDPGAAEFF 181 (454)
Q Consensus 110 ~~~~---~-~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g--~~V~~i~~~~~~~~~~~d~~~~~~~ 181 (454)
|+.. . ....+++.+-.... +....+++|+|||||.+|.|++..|. + .+|+|+.|++.+.+....+-..+.+
T Consensus 162 P~~~~~~~~~~~v~Hss~~~~~~-~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f 240 (341)
T PF13434_consen 162 PEWFQDLPGSPRVFHSSEYLSRI-DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIF 240 (341)
T ss_dssp -GGGGGGTT-TTEEEGGGHHHHH-T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGG
T ss_pred CcchhhcCCCCCEEEehHhhhcc-ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhc
Confidence 8764 1 12223343333332 22345899999999999999999986 3 5899999999887742222222232
Q ss_pred HHH----hhccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec
Q psy1545 182 QDS----INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT 257 (454)
Q Consensus 182 ~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~ 257 (454)
.+. +-....++...+..+.+-++...+.+.+..++...++..+...+..++++.+++|++++..++ ..+.+.+.
T Consensus 241 ~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~--~~~~l~~~ 318 (341)
T PF13434_consen 241 SPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD--GGVRLTLR 318 (341)
T ss_dssp SHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES---SSEEEEEE
T ss_pred CchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC--CEEEEEEE
Confidence 222 211122222334444444455555555555555555443333455799999999999987763 25667776
Q ss_pred CC-----cEEecCEEEEeeccC
Q psy1545 258 NG-----HTHACDIVVSAIGVV 274 (454)
Q Consensus 258 ~g-----~~~~~D~vi~a~G~~ 274 (454)
+. .++++|.||+|||++
T Consensus 319 ~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 319 HRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp ETTT--EEEEEESEEEE---EE
T ss_pred ECCCCCeEEEecCEEEEcCCcc
Confidence 52 678999999999985
No 83
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.83 E-value=1.5e-20 Score=168.37 Aligned_cols=124 Identities=25% Similarity=0.272 Sum_probs=80.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccc-----cccch-h--h--hHHHHHhc-CcEE-
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLL-----SDITV-E--E--TDANKFEG-LCTV- 71 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~-----~~~~~-~--~--~~~~~~~~-~i~~- 71 (454)
||||||||+||++||.+|++. +.+++++++.+...+. ...++... ..... . . ...+.+.. ++++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~--~~~v~ii~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP--GAKVLIIEKSPGTPYN--SGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIR 76 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEESSSSHHHHH--HSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEE
T ss_pred CEEEEecHHHHHHHHHHHhcC--CCeEEEEecccccccc--cccccccccccccccccccccccccccccccccceEEEe
Confidence 799999999999999999986 9999999988754321 11111111 00000 0 1 23334444 9998
Q ss_pred EcceEEEEeCcccEE----------EeccCcEEEecEEEEecCCCCCCCCCCC--ceeeeeccchHHHHHHH
Q psy1545 72 IVDTVAAIDPRVNCV----------ITEKQNRIKYKTLCICTGASPRKIWYSP--HVITIRDTDSVAVLQEK 131 (454)
Q Consensus 72 ~~~~v~~i~~~~~~v----------~~~~g~~i~~d~lviAtG~~p~~~~~~~--~~~~~~~~~~~~~l~~~ 131 (454)
+..++..++...+.+ ...++.++.||+||+|||+.|+.|+++. ......+..++..+.+.
T Consensus 77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 148 (201)
T PF07992_consen 77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLEL 148 (201)
T ss_dssp HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTH
T ss_pred eccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccc
Confidence 467999998877742 1224568999999999999988887772 22333444555555443
No 84
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=4.6e-19 Score=165.15 Aligned_cols=307 Identities=13% Similarity=0.116 Sum_probs=196.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccc--------cccccc---------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV--------PVTKLL--------------------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~--------~~~~~~--------------------- 52 (454)
.+|+|.||-||+.|+.|..|.+.. +.++..+|+.+.+.+..... ++-+.+
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~R 83 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHGR 83 (436)
T ss_pred ceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcch
Confidence 379999999999999999999873 47899999998764322210 000000
Q ss_pred -------cccchhhh----HHHHHhcCcEE--EcceEE---EEeCccc---EEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 53 -------SDITVEET----DANKFEGLCTV--IVDTVA---AIDPRVN---CVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 53 -------~~~~~~~~----~~~~~~~~i~~--~~~~v~---~i~~~~~---~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
..+.+.+. +.+|..+.... +...|+ .++.+.. .+.+.++.+++++.|||++|.+|+.|+.-
T Consensus 84 Ly~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 84 LYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred HhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHH
Confidence 01111122 22333332222 234666 4544433 24555677999999999999999999754
Q ss_pred -----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc------CCcEEEEEeCCCccccccCCcchhhhH
Q psy1545 114 -----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS------NVDIVWVVKDKHISATFLDPGAAEFFQ 182 (454)
Q Consensus 114 -----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~------g~~V~~i~~~~~~~~~~~d~~~~~~~~ 182 (454)
++++ ++.+-+.+..+. ...++|.|||+|.+|.|+-..|. ..++.|+.|+..+.+--..+-..+.+.
T Consensus 164 ~~l~~~~vf--Hss~~~~~~~~~-~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~ 240 (436)
T COG3486 164 RSLIGERVF--HSSEYLERHPEL-LQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFS 240 (436)
T ss_pred hCcCcccee--ehHHHHHhhHHh-hcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcC
Confidence 3444 344444343332 23455999999999999999885 456999999998876321121222221
Q ss_pred HHhhc----cCCCChhhhhhhcccccCCCCCCCCCCccccccccccCc-cCCceEEEeCceEEEEEcCCCCccceEEEec
Q psy1545 183 DSINK----TNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLT 257 (454)
Q Consensus 183 ~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~ 257 (454)
+.+.+ ...+....+..+.+ .+...+...+..++...++.+... .+..+.++.++++..++..++ + .+.+.+.
T Consensus 241 P~y~dyfy~l~~~~r~~ll~~~~-~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~-g-~~~l~~~ 317 (436)
T COG3486 241 PEYTDYFYGLPPEARDELLRKQR-LLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD-G-RYRLTLR 317 (436)
T ss_pred chhHHHHhcCCHHHHHHHHhhcC-ccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCC-c-eEEEEEe
Confidence 11111 12223344555555 666667777777777766644332 467899999999999998875 2 2555553
Q ss_pred C-----CcEEecCEEEEeeccCcCcccccCCCC--ceecCCCceEeccccc--ccc---CceeecCcccc
Q psy1545 258 N-----GHTHACDIVVSAIGVVPNSNIQVHGTP--FELAPDCGIGVNELMQ--TSI---SNVYAAGDVCT 315 (454)
Q Consensus 258 ~-----g~~~~~D~vi~a~G~~p~~~~~~~~~~--l~~~~~g~i~vd~~~~--t~~---~~Iya~GD~~~ 315 (454)
. .+++++|.||+|||++...+.|++... +..+++|...|++.++ +.. -.||+.|-+..
T Consensus 318 ~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 318 HHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred eccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence 2 267999999999999966554665432 5668899999998766 221 35999996654
No 85
>KOG0399|consensus
Probab=99.81 E-value=1.6e-19 Score=183.61 Aligned_cols=309 Identities=19% Similarity=0.182 Sum_probs=177.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
++|.|||+|||||+||-.|.+. |+.|+++|+.+..++...+.-....+..+ +.++..+.+.. +|+|+...- |.
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~--gh~v~vyer~dr~ggll~ygipnmkldk~-vv~rrv~ll~~egi~f~tn~e--ig- 1859 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKA--GHTVTVYERSDRVGGLLMYGIPNMKLDKF-VVQRRVDLLEQEGIRFVTNTE--IG- 1859 (2142)
T ss_pred cEEEEEccCchhhhHHHHHhhc--CcEEEEEEecCCcCceeeecCCccchhHH-HHHHHHHHHHhhCceEEeecc--cc-
Confidence 5799999999999999999998 99999999999998877664332333323 44555555666 999874321 11
Q ss_pred cccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHH-HHHHh-----------hcCCeEEEEcCchhH
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAV-LQEKL-----------KSAKKIVVIGNGGIA 147 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~-l~~~~-----------~~~~~vvVvG~G~~g 147 (454)
+.+.+ |+-.-.+|.+|+|+|+. |+..|++ .+...++-.-++.. -.+.+ .++|+|+|||||.+|
T Consensus 1860 --k~vs~-d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg 1936 (2142)
T KOG0399|consen 1860 --KHVSL-DELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTG 1936 (2142)
T ss_pred --ccccH-HHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcc
Confidence 22433 44455799999999985 9988988 33333332222211 11111 248999999999999
Q ss_pred HHHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccC-CCCCCCCCCccccccccc
Q psy1545 148 TELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTG-GEKGPSLGPDWHTQVNLH 223 (454)
Q Consensus 148 ~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 223 (454)
.++...-. |+. |.-++--+..-+..-....+..+.+.++- ... .+...+.+.+.....-+.
T Consensus 1937 ~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrv---------------dygh~e~~~~~g~dpr~y~vlt 2001 (2142)
T KOG0399|consen 1937 TDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRV---------------DYGHAEAKEHYGSDPRTYSVLT 2001 (2142)
T ss_pred ccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEe---------------ecchHHHHHHhCCCcceeeeee
Confidence 98775432 442 33332211111100001111111111100 000 001112222222211111
Q ss_pred cCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEe-ccc
Q psy1545 224 GSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGV-NEL 299 (454)
Q Consensus 224 ~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~v-d~~ 299 (454)
+.+ ...+ ..+++-+..+++..++..+.+.+.--++ +.++||++++|.|+........+..+++.+.++.|.. +..
T Consensus 2002 k~f~~~~~-g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~ 2080 (2142)
T KOG0399|consen 2002 KRFIGDDN-GNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDS 2080 (2142)
T ss_pred eeeeccCC-CceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCcc
Confidence 111 1011 1122223333333222133555544333 6799999999999965443266677788887777776 366
Q ss_pred cccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 300 MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 300 ~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
+.|++++|||+|||-.+. .+..-|+++||.+|+.+=.
T Consensus 2081 y~t~v~~vfaagdcrrgq----------slvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2081 YSTDVAKVFAAGDCRRGQ----------SLVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred ccccccceeecccccCCc----------eEEEEEehhhhHHHHHHHH
Confidence 889999999999997653 2444589999999987654
No 86
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.80 E-value=1.4e-18 Score=180.89 Aligned_cols=300 Identities=13% Similarity=0.089 Sum_probs=171.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc-----------------cccc-cccccc----cchhhh
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK-----------------TVPV-TKLLSD----ITVEET 60 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~-----------------~~~~-~~~~~~----~~~~~~ 60 (454)
++|+||||||||++||+.|++. |++|+++|+.+..+...+ ..+. ...+.. +++...
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~--Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R~~k~ 461 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRS--GHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVRWDKN 461 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhC--CCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCccccchHH
Confidence 5899999999999999999998 999999998643211110 0000 011111 222222
Q ss_pred HHH---HHhc---CcEEEcceEEEEeCcccEEEeccCcEEEecEEEEecCC-CCCCCCCC-CceeeeeccchHHHHHHHh
Q psy1545 61 DAN---KFEG---LCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGA-SPRKIWYS-PHVITIRDTDSVAVLQEKL 132 (454)
Q Consensus 61 ~~~---~~~~---~i~~~~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~-~p~~~~~~-~~~~~~~~~~~~~~l~~~~ 132 (454)
..+ .+.+ ++.++.+.....+ ++.++-....||+|+||||+ .|+.++++ .+...+.+..++.......
T Consensus 462 ~l~~i~~il~~g~~v~~~~gv~lG~d-----it~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~ 536 (1028)
T PRK06567 462 NLDILRLILERNNNFKYYDGVALDFN-----ITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSG 536 (1028)
T ss_pred HHHHHHHHHhcCCceEEECCeEECcc-----CCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhc
Confidence 222 2222 4555555332222 22222134679999999999 69999988 3344455555544332111
Q ss_pred -----------hcCCeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhhhHHHhhccC----CCC
Q psy1545 133 -----------KSAKKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN----TAK 192 (454)
Q Consensus 133 -----------~~~~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~----~~~ 192 (454)
..+++++|||||++|+|+|.... +.++++....++.++. +|++.++.+...+++.- .++
T Consensus 537 ~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~-~d~eia~~f~~h~r~~g~~~~~~~ 615 (1028)
T PRK06567 537 GAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTE-EDKEIAEEFIAHAKLFKEAKNNEE 615 (1028)
T ss_pred ccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhccc-ccHHHHHHHHHHHHhhcchhccch
Confidence 12579999999999999998432 6677777776666664 78888888887776510 000
Q ss_pred hhhhhhh---cccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec------------
Q psy1545 193 PETIFKR---MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT------------ 257 (454)
Q Consensus 193 ~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~------------ 257 (454)
...+..+ ..+..+..... .|....-..-.+...+.||.++.+....++..+++ +....+++.
T Consensus 616 v~~l~~~~G~VtIvYRr~~~e--mpA~~~~~eEv~~A~eEGV~f~~~~~P~~i~~d~~-g~v~~l~~~~~~~~~~~~~~~ 692 (1028)
T PRK06567 616 LRKVFNKLGGATVYYRGRLQD--SPAYKLNHEELIYALALGVDFKENMQPLRINVDKY-GHVESVEFENRNRHCEQSKTA 692 (1028)
T ss_pred hhhhhccCCceEEEecCChhh--CCCCCCCHHHHHHHHHcCcEEEecCCcEEEEecCC-CeEEEEEEEEEeccccccccc
Confidence 0000000 00100000000 00000000001112458999999999999876532 223333221
Q ss_pred --C----------------CcEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCcccccCCc
Q psy1545 258 --N----------------GHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWD 319 (454)
Q Consensus 258 --~----------------g~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~ 319 (454)
+ ..+++||.||+|+|..||+. +.. .+..+-++.+++|+-
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~-~~~-------------~~~s~~~d~~~~f~G--------- 749 (1028)
T PRK06567 693 WQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQ-FDE-------------DKYSYFGDCNPKYSG--------- 749 (1028)
T ss_pred ccccccccCCcCcccCCCccccccCCEEEEecccCCccc-ccc-------------cccccccCCCCcccc---------
Confidence 1 14689999999999999987 420 011222334455543
Q ss_pred cccchhhccChHHHHHHHHHHHhhhc
Q psy1545 320 LAKQWFQMRLWTQAKHMGTYAAKCMV 345 (454)
Q Consensus 320 ~~~~~~~~~~~~~A~~~g~~aa~~i~ 345 (454)
....|+.+|+.++.+|.
T Consensus 750 ---------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 750 ---------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ---------HHHHHHHHHHhHHHHHH
Confidence 23468999999999985
No 87
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.8e-16 Score=155.32 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=109.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCe-EEEECCCCccccccccccccc---------------------cccccc-hh
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGES-IGLVTPSGIVKAVTKTVPVTK---------------------LLSDIT-VE 58 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~-v~lie~~~~~~~~~~~~~~~~---------------------~~~~~~-~~ 58 (454)
++||+|||||++|+++|++|+++ +.. ++++|+++..++.|++..+.. ....+. +.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~ 85 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIK 85 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHH
Confidence 57999999999999999999999 555 999999987776655522110 111111 11
Q ss_pred hhHHHHHhc-----CcEEEcc-eEEEEeCcc--cEEEeccCcE--EEecEEEEecCC--CCCCCCCC------Cceeeee
Q psy1545 59 ETDANKFEG-----LCTVIVD-TVAAIDPRV--NCVITEKQNR--IKYKTLCICTGA--SPRKIWYS------PHVITIR 120 (454)
Q Consensus 59 ~~~~~~~~~-----~i~~~~~-~v~~i~~~~--~~v~~~~g~~--i~~d~lviAtG~--~p~~~~~~------~~~~~~~ 120 (454)
.....++.. .+.+... ++...+.++ .+|+++++.. +.+|+||+|||. .|+.|.++ ..+++..
T Consensus 86 ~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~ 165 (443)
T COG2072 86 DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSA 165 (443)
T ss_pred HHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEchh
Confidence 112222222 3444332 333333332 3677776654 569999999995 68888887 2344444
Q ss_pred ccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 121 ~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
...+...+ .+|+|+|||+|.+|++++..|. +.+||++.|++...
T Consensus 166 ~~~~~~~~-----~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 166 DWPNPEDL-----RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred cCCCcccc-----CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 44445444 3999999999999999999997 89999999988654
No 88
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.72 E-value=4.4e-17 Score=146.10 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=91.8
Q ss_pred EEECCCHHHHHHHHHHhhcCCCCe-EEEECCCCccccccccc-cc----c-c------cccc---cc-------------
Q psy1545 6 LIIGGGIAGVSCVEGLAFLHPGES-IGLVTPSGIVKAVTKTV-PV----T-K------LLSD---IT------------- 56 (454)
Q Consensus 6 vIIGgG~aGl~aA~~l~~~~~g~~-v~lie~~~~~~~~~~~~-~~----~-~------~~~~---~~------------- 56 (454)
+|||||++|+++|..|.+. |.+ ++|+|+++.+++.|... .. . . .+.. +.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~--g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER--GIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT--T---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 7999999999999999998 778 99999997766544321 00 0 0 0000 00
Q ss_pred -hh---hhHHHHHhc--CcEEEc-ceEEEEeCcc--cEEEeccCcEEEecEEEEecCC--CCCCCCCCC-ceeeeeccch
Q psy1545 57 -VE---ETDANKFEG--LCTVIV-DTVAAIDPRV--NCVITEKQNRIKYKTLCICTGA--SPRKIWYSP-HVITIRDTDS 124 (454)
Q Consensus 57 -~~---~~~~~~~~~--~i~~~~-~~v~~i~~~~--~~v~~~~g~~i~~d~lviAtG~--~p~~~~~~~-~~~~~~~~~~ 124 (454)
.. .++++.+.+ ++++.. .+|+.+..++ ..|++.+++.+++|+||+|||. .|+.|+++. .........+
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~ 158 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSAD 158 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhh
Confidence 00 122333333 777654 5888887654 4788877878999999999996 688777764 1111112222
Q ss_pred HHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 125 VAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 125 ~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
+..... ..+++|+|||+|.+|+++|..|. +.+|+|+.|++.
T Consensus 159 ~~~~~~--~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 159 WRDPED--FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp -STTGG--CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred cCChhh--cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 221111 14799999999999999999997 899999999864
No 89
>KOG1800|consensus
Probab=99.68 E-value=9.1e-17 Score=147.77 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=107.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+|.|||+||||+.+|..|.++.++.+|.|+|+.+.+.+...+.-.+....--.....+.+-... ...|+.+ .+
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~v---- 96 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKV---- 96 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEeccee----
Confidence 47999999999999999999976789999999999988877764433322212222222222222 5554432 11
Q ss_pred CcccEEEeccCcEEEecEEEEecCCC-CCCCCCC-CceeeeeccchHHHHHHHhh---------cCCeEEEEcCchhHHH
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGAS-PRKIWYS-PHVITIRDTDSVAVLQEKLK---------SAKKIVVIGNGGIATE 149 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~-p~~~~~~-~~~~~~~~~~~~~~l~~~~~---------~~~~vvVvG~G~~g~e 149 (454)
...+.+. .-+-.||.+|||.|+. ++...+| +...++.+...+....+-+. ...+++|||.|.++++
T Consensus 97 --G~dvsl~-eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlD 173 (468)
T KOG1800|consen 97 --GRDVSLK-ELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALD 173 (468)
T ss_pred --cccccHH-HHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhh
Confidence 0113331 1245699999999995 8888898 44455555555444433211 2679999999999999
Q ss_pred HHHHhcC------------------------CcEEEEEeCCCccccc
Q psy1545 150 LVHELSN------------------------VDIVWVVKDKHISATF 172 (454)
Q Consensus 150 ~a~~l~g------------------------~~V~~i~~~~~~~~~~ 172 (454)
+|..|.. .+|+++.|+..+...|
T Consensus 174 vARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aF 220 (468)
T KOG1800|consen 174 VARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAF 220 (468)
T ss_pred hhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceee
Confidence 9988741 2588888877655443
No 90
>KOG1399|consensus
Probab=99.66 E-value=2.8e-15 Score=146.98 Aligned_cols=266 Identities=15% Similarity=0.146 Sum_probs=159.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccc--------ccccc-----------ccccch-----
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV--------PVTKL-----------LSDITV----- 57 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~--------~~~~~-----------~~~~~~----- 57 (454)
..+++|||||+|||++|+.|++. |++++++|+.+..++.|.+. .+... ++++..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~--g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE--GHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC--CCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 67999999999999999999998 99999999999999888776 21000 111111
Q ss_pred -----h---hhHHHHHhc--Cc--EEE-cceEEEEeCc---ccEEEeccC----cEEEecEEEEecCCC--CCCCCCC--
Q psy1545 58 -----E---ETDANKFEG--LC--TVI-VDTVAAIDPR---VNCVITEKQ----NRIKYKTLCICTGAS--PRKIWYS-- 113 (454)
Q Consensus 58 -----~---~~~~~~~~~--~i--~~~-~~~v~~i~~~---~~~v~~~~g----~~i~~d~lviAtG~~--p~~~~~~-- 113 (454)
. ..+++.|.+ ++ .+. ..++..++.. ...|...++ ...-||.|++|||-. |+.|.++
T Consensus 84 ~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 84 RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 1 123333433 32 222 3344455443 335655433 367899999999986 7777664
Q ss_pred ------CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHh
Q psy1545 114 ------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSI 185 (454)
Q Consensus 114 ------~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l 185 (454)
+.+++.++......+ .+|+|+|||+|.+|+|++..++ ..+|++..+ ..... +. ....
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f-----~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~---~~-----~~~~- 228 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKF-----RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVH---VE-----PPEI- 228 (448)
T ss_pred chhhcCCcceehhhccCcccc-----cCceEEEECCCccHHHHHHHHHHhccCcceeee-ccccc---cc-----ccce-
Confidence 224444443333333 3799999999999999999975 667777654 10000 00 0000
Q ss_pred hccCCCChhhhhhhcccccCCCCCCCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecC
Q psy1545 186 NKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACD 265 (454)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D 265 (454)
...++..+.. +..+..++ .+.+.++....+|
T Consensus 229 -----------------------------------------~~~~~~~~~~--i~~~~e~~------~~~~~~~~~~~~D 259 (448)
T KOG1399|consen 229 -----------------------------------------LGENLWQVPS--IKSFTEDG------SVFEKGGPVERVD 259 (448)
T ss_pred -----------------------------------------eecceEEccc--cccccCcc------eEEEcCceeEEee
Confidence 0023333332 55555554 2555677888999
Q ss_pred EEEEeeccCcCcccccCCCCceecCCCceEecccc-----ccccCceeecC-cccccCCccccchhhccChHHHHHHHHH
Q psy1545 266 IVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELM-----QTSISNVYAAG-DVCTPSWDLAKQWFQMRLWTQAKHMGTY 339 (454)
Q Consensus 266 ~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~-----~t~~~~Iya~G-D~~~~~~~~~~~~~~~~~~~~A~~~g~~ 339 (454)
.+|+|||+.=..+ +++..+. +.+++.. ..-.|..++-| .-+..+... ...+....|++.
T Consensus 260 ~ii~ctgy~y~fP-fl~~~~~-------~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~-------~~f~~~e~Q~r~ 324 (448)
T KOG1399|consen 260 RIIFCTGYKYKFP-FLETLGL-------GTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQ-------IPFPMFELQARW 324 (448)
T ss_pred eEEEeeeeEeecc-eeccCCc-------eeeccCcccchheeccchhhCccccccccCeee-------Eeecceehhhhh
Confidence 9999999987776 6654421 2222221 12234455555 222222110 123456788888
Q ss_pred HHhhhcCCC
Q psy1545 340 AAKCMVGAV 348 (454)
Q Consensus 340 aa~~i~~~~ 348 (454)
+++-+.+..
T Consensus 325 ~~~v~~G~~ 333 (448)
T KOG1399|consen 325 VAAVLEGRL 333 (448)
T ss_pred hHhhhcCCC
Confidence 888888764
No 91
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.66 E-value=1.2e-15 Score=149.45 Aligned_cols=291 Identities=14% Similarity=0.107 Sum_probs=151.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccccc-chhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDI-TVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
.+|+||||||||+.||..|.+. .+++|+|+|+.+.+++...+.-.+.. ... .+...+...+.. +++++.+ + .+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gn-v-~VG 115 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGN-V-HVG 115 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEee-e-Eec
Confidence 4799999999999999987643 28999999999999877766432221 222 121222222333 6776521 1 111
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCCC-----------C-------ceeeeecc-------chHH---HHHHHh
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYS-----------P-------HVITIRDT-------DSVA---VLQEKL 132 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~-----------~-------~~~~~~~~-------~~~~---~l~~~~ 132 (454)
. .++.++- .-.||.||+|+|+.+..++++ + +++...+. -+.. .....+
T Consensus 116 ~---Dvt~eeL-~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL 191 (506)
T PTZ00188 116 V---DLKMEEL-RNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYL 191 (506)
T ss_pred C---ccCHHHH-HhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCCCccccccccccc
Confidence 1 1322221 237999999999987655521 1 22211111 1110 111111
Q ss_pred ---hcCCeEEEEcCchhHHHHHHHhc-----------------------CCcEEEEEeCCCccccccCCcchhhhHHHhh
Q psy1545 133 ---KSAKKIVVIGNGGIATELVHELS-----------------------NVDIVWVVKDKHISATFLDPGAAEFFQDSIN 186 (454)
Q Consensus 133 ---~~~~~vvVvG~G~~g~e~a~~l~-----------------------g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~ 186 (454)
...++++|||.|++|+++|..|. -.+|+++.|+......|-.+++.++..-.
T Consensus 192 ~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~-- 269 (506)
T PTZ00188 192 NSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLE-- 269 (506)
T ss_pred cccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCC--
Confidence 13578999999999999998753 12699999987666554333333322100
Q ss_pred ccCCCChhhhhhhcccc-cCCCCCCCCCCc----------ccccccc--cc-C--ccCCceEEEeCceEEEEEcCCCCcc
Q psy1545 187 KTNTAKPETIFKRMRYN-TGGEKGPSLGPD----------WHTQVNL--HG-S--SRDTKITIEYSCEVERIVDSEDDTC 250 (454)
Q Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----------~~~~~~~--~~-~--l~~~gv~i~~~~~v~~i~~~~~~~~ 250 (454)
..+........... .... ...+... +...... .. . -..+-+.+++.....+|...+ +.
T Consensus 270 ---~~~v~v~~~d~~~~~~~~~-~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~--~~ 343 (506)
T PTZ00188 270 ---NTKVILSKKNYDLCCHLKS-DEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPID--GA 343 (506)
T ss_pred ---CCeEEEChhhhcccccccc-hhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCC--Cc
Confidence 00000000000000 0000 0000000 0000000 00 0 012567788888888887522 12
Q ss_pred ceEEEec-----------CC--cEEecCEEEEeeccCcCcccccCCCCceecCCCceEeccccc--cccCceeecCcccc
Q psy1545 251 NAYVKLT-----------NG--HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQ--TSISNVYAAGDVCT 315 (454)
Q Consensus 251 ~~~v~~~-----------~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~--t~~~~Iya~GD~~~ 315 (454)
+..+++. .| ++++||+|+-|+|++... + . ++..| +. +... ..+ +..|++|++|.+-.
T Consensus 344 v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~-~--g~pFd-~~-~~n~-~grv~~~~~g~Y~~GWiKr 415 (506)
T PTZ00188 344 MKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--F-A--ENLYN-QS-VQMF-KEDIGQHKFAIFKAGWFDK 415 (506)
T ss_pred EeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--C-C--CCCcc-cc-CCCC-CCcccCCCCCcEEeeecCc
Confidence 3334433 23 579999999999998764 2 2 23344 22 2221 122 23799999999987
Q ss_pred cC
Q psy1545 316 PS 317 (454)
Q Consensus 316 ~~ 317 (454)
+|
T Consensus 416 GP 417 (506)
T PTZ00188 416 GP 417 (506)
T ss_pred CC
Confidence 65
No 92
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.65 E-value=1.1e-14 Score=138.13 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=77.0
Q ss_pred CCceEEEeCceEEEEEcCCCCccceEEEecCC-----cEEecCEEEEeeccCcCcc--cccCCCCceecCCCceEec-cc
Q psy1545 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNSN--IQVHGTPFELAPDCGIGVN-EL 299 (454)
Q Consensus 228 ~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-----~~~~~D~vi~a~G~~p~~~--~~~~~~~l~~~~~g~i~vd-~~ 299 (454)
+.||.++.+ ++.+|....+ ..+.|..+|. .++++|+|++++|..|... .+...+|+..+++||+... +.
T Consensus 427 ~~gV~fIRG-rvaei~e~p~--~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPk 503 (622)
T COG1148 427 DYGVRFIRG-RVAEIAEFPK--KKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPK 503 (622)
T ss_pred hhchhhhcC-ChHHheeCCC--CeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCC
Confidence 479999988 6666665543 2356666553 5789999999999998653 2455668889999999887 56
Q ss_pred cc---cccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 300 MQ---TSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 300 ~~---t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
++ |+.++||.+|-|.++ +-...++.||..||...+.
T Consensus 504 l~pv~s~~~GIflAG~aqgP-----------kdI~~siaqa~aAA~kA~~ 542 (622)
T COG1148 504 LRPVDSNRDGIFLAGAAQGP-----------KDIADSIAQAKAAAAKAAQ 542 (622)
T ss_pred cccccccCCcEEEeecccCC-----------ccHHHHHHHhHHHHHHHHH
Confidence 66 789999999987653 3455677787777765443
No 93
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.61 E-value=1.5e-14 Score=142.02 Aligned_cols=157 Identities=13% Similarity=-0.080 Sum_probs=105.9
Q ss_pred EEEEcCchhHHHHH-HHh------cCCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 138 IVVIGNGGIATELV-HEL------SNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 138 vvVvG~G~~g~e~a-~~l------~g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
=.|++.+.+|+|.+ ..+ .|++|+++...++.++.. ++.+.+.+.+.
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~---rL~~aL~~~l~------------------------ 270 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL---RLQNALRRAFE------------------------ 270 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH---HHHHHHHHHHH------------------------
Confidence 36789999999998 544 299999999888877642 34444545443
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccCcCccccc-------
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNIQV------- 281 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~~~~------- 281 (454)
+.|+++++++.|.+++..++ ....+...+| ..+++|.+|+|+|+.+... +.
T Consensus 271 -----------------~~Gv~I~~g~~V~~v~~~~~--~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~G-L~a~~~~i~ 330 (422)
T PRK05329 271 -----------------RLGGRIMPGDEVLGAEFEGG--RVTAVWTRNHGDIPLRARHFVLATGSFFSGG-LVAERDGIR 330 (422)
T ss_pred -----------------hCCCEEEeCCEEEEEEEeCC--EEEEEEeeCCceEEEECCEEEEeCCCcccCc-eeccCCccc
Confidence 38999999999999986552 2333334445 4589999999999876543 21
Q ss_pred ----------------------------CCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccC-hHH
Q psy1545 282 ----------------------------HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL-WTQ 332 (454)
Q Consensus 282 ----------------------------~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~-~~~ 332 (454)
...|+.+|+ ....+|...++..+|+||+|++.+++.+.. .++ .-.
T Consensus 331 Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~-~~~p~~~~g~~~~~nl~a~G~vl~g~d~~~-----~~~g~Gv 404 (422)
T PRK05329 331 EPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDA-TLRPLDSQGGPVIENLYAAGAVLGGYDPIR-----EGCGSGV 404 (422)
T ss_pred cccCCCCCCCCCchhhhhhhhhccCCchhhcCceECC-CcCcccCCCCeeccceEEeeehhcCCchHH-----hCCCchh
Confidence 112333332 233345555567899999999998754321 111 236
Q ss_pred HHHHHHHHHhhhcCC
Q psy1545 333 AKHMGTYAAKCMVGA 347 (454)
Q Consensus 333 A~~~g~~aa~~i~~~ 347 (454)
|+..|..||++|+..
T Consensus 405 a~~ta~~a~~~~~~~ 419 (422)
T PRK05329 405 ALATALHAAEQIAEE 419 (422)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888899999988753
No 94
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.29 E-value=2e-11 Score=91.58 Aligned_cols=78 Identities=26% Similarity=0.462 Sum_probs=69.5
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGP 214 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 214 (454)
|++|||||++|+|+|..|. +.+||++++++.+++ .++++....+.+.+++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~--------------------------- 52 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRK--------------------------- 52 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHH---------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHH---------------------------
Confidence 6899999999999999997 999999999999994 5899999999888866
Q ss_pred ccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC
Q psy1545 215 DWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG 259 (454)
Q Consensus 215 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g 259 (454)
.||++++++.+++++.+++ . ++|+++||
T Consensus 53 --------------~gV~v~~~~~v~~i~~~~~--~-~~V~~~~g 80 (80)
T PF00070_consen 53 --------------RGVEVHTNTKVKEIEKDGD--G-VEVTLEDG 80 (80)
T ss_dssp --------------TTEEEEESEEEEEEEEETT--S-EEEEEETS
T ss_pred --------------CCCEEEeCCEEEEEEEeCC--E-EEEEEecC
Confidence 8999999999999998874 2 55888876
No 95
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.12 E-value=4.3e-10 Score=113.53 Aligned_cols=57 Identities=21% Similarity=0.267 Sum_probs=39.4
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
...|+|.||...||++||+||+|+|+.......+... -.....+...|+.|+++++.
T Consensus 308 ~t~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~-gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 308 YTIGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLA-SNSLLECIVSGLEVARTISR 364 (466)
T ss_pred ecCCCEEECCCCcccCCCEEECccccccCCCCCCcch-hHHHHHHHHHHHHHHHHHhh
Confidence 3479999999999999999999999753233322100 01123466778889988875
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.10 E-value=7.6e-10 Score=104.32 Aligned_cols=105 Identities=20% Similarity=0.299 Sum_probs=72.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc--------cc-------------ccc---cc---------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA--------VT-------------KTV---PV--------- 48 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~--------~~-------------~~~---~~--------- 48 (454)
.+||+|||||+||+.||..+.+. |.+|+|||+.+.++. -. ++| .+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~--G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft 80 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKA--GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFT 80 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhc--CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCC
Confidence 68999999999999999999998 999999999865421 00 111 00
Q ss_pred --------------------cccccc----cchhhhHHHHHhc-CcEEE-cceEEEEeCcc--cEEEeccCcEEEecEEE
Q psy1545 49 --------------------TKLLSD----ITVEETDANKFEG-LCTVI-VDTVAAIDPRV--NCVITEKQNRIKYKTLC 100 (454)
Q Consensus 49 --------------------~~~~~~----~~~~~~~~~~~~~-~i~~~-~~~v~~i~~~~--~~v~~~~g~~i~~d~lv 100 (454)
.+.++. .++.+.....+.+ +++++ +.++..++.+. -.+.+.+|+++.+|.+|
T Consensus 81 ~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~li 160 (408)
T COG2081 81 PEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLI 160 (408)
T ss_pred HHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEE
Confidence 000000 0111223334444 99997 45999998774 46777788899999999
Q ss_pred EecC--CCCC
Q psy1545 101 ICTG--ASPR 108 (454)
Q Consensus 101 iAtG--~~p~ 108 (454)
+||| +.|.
T Consensus 161 lAtGG~S~P~ 170 (408)
T COG2081 161 LATGGKSWPK 170 (408)
T ss_pred EecCCcCCCC
Confidence 9999 4564
No 97
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.08 E-value=9.8e-09 Score=99.36 Aligned_cols=163 Identities=15% Similarity=0.155 Sum_probs=98.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCC-CCeEEEECCCCcccccccc--------------------cc----cccccccc--
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHP-GESIGLVTPSGIVKAVTKT--------------------VP----VTKLLSDI-- 55 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~v~lie~~~~~~~~~~~--------------------~~----~~~~~~~~-- 55 (454)
++|+|||||+.|+..|.+|.+.-. ...|.|+|+.+.++.-.-| +. |..++...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 789999999999999999998632 2349999998655311100 00 11111100
Q ss_pred ------------------c----hhhhHHHHHhc-----CcEEEcceEEEEeCcc----cEEEeccCcEEEecEEEEecC
Q psy1545 56 ------------------T----VEETDANKFEG-----LCTVIVDTVAAIDPRV----NCVITEKQNRIKYKTLCICTG 104 (454)
Q Consensus 56 ------------------~----~~~~~~~~~~~-----~i~~~~~~v~~i~~~~----~~v~~~~g~~i~~d~lviAtG 104 (454)
. +..+.+..|.+ .+.+++.+++.+.+.+ ..+...+|....+|-+|+|||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatg 161 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATG 161 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEecc
Confidence 0 00111222222 2677777777776652 256667888899999999999
Q ss_pred CCCCCCCCC-----CceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCC
Q psy1545 105 ASPRKIWYS-----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS----NVDIVWVVKDK 166 (454)
Q Consensus 105 ~~p~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~ 166 (454)
..+-.++.. +....+.+......+. .+....+++|+|+|.+.++....+. ..++|++.|+.
T Consensus 162 h~~~~~~~~~~~~~~~~~~ia~~~~~~~ld-~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 162 HSAPPADPAARDLKGSPRLIADPYPANALD-GVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCCCCcchhhhccCCCcceeccccCCcccc-cccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 754333221 1111122222222221 1223567999999999999998886 35799999865
No 98
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.06 E-value=8.9e-09 Score=106.53 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=47.7
Q ss_pred ccCcCcccccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 272 GVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 272 G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
|..|..+ .++..+......|+|.||..+||++|++||+|+|+.......+... -.....|.-.|+.|+++++...
T Consensus 340 G~d~~~~-~i~v~p~~h~t~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlg-gnsl~~a~v~Gr~Ag~~aa~~~ 414 (582)
T PRK09231 340 GVDPVKE-PIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRLG-SNSLAELVVFGRVAGEQAAERA 414 (582)
T ss_pred CCCCCCC-eeeeeceeeeeCCCEEECCCCccccCCEEecccccccccCCCCCcc-hhHHHHHHHHHHHHHHHHHHhh
Confidence 5555544 3333333334578999999999999999999999753333322110 0123346778889888887543
No 99
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.02 E-value=1.5e-09 Score=104.80 Aligned_cols=75 Identities=27% Similarity=0.336 Sum_probs=52.0
Q ss_pred EEeeccCcCcccccCCCCceecCCCceEeccccccccCceeecCcccccCCccccchhhccChHHH----HHHHHHHHhh
Q psy1545 268 VSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA----KHMGTYAAKC 343 (454)
Q Consensus 268 i~a~G~~p~~~~~~~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A----~~~g~~aa~~ 343 (454)
+...|..|..+ .+.-.+...--.|+|.||.+.||+.|++||+|.|+.....+++ +++.++ .-.|..+|++
T Consensus 319 c~~~GiD~~r~-~IPV~PaaHY~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGAN-----RLASNSLLE~vV~g~~aA~~ 392 (518)
T COG0029 319 CLKAGIDPTRE-PIPVVPAAHYTMGGIAVDANGRTSIPGLYAIGEVACTGLHGAN-----RLASNSLLECLVFGKRAAED 392 (518)
T ss_pred HHHcCCCcccC-ccCccchhheecccEEECCCCcccCcccEEeeeecccccccch-----hhhhhhHHHHHHHHHHHHHH
Confidence 33456666555 3333333333469999999999999999999999987666654 455554 4557777888
Q ss_pred hcCCC
Q psy1545 344 MVGAV 348 (454)
Q Consensus 344 i~~~~ 348 (454)
|.+..
T Consensus 393 i~~~~ 397 (518)
T COG0029 393 IAGRL 397 (518)
T ss_pred hhccc
Confidence 88754
No 100
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.01 E-value=1.4e-08 Score=105.22 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+++||+|||||.||++||.++++.+++.+|+|+|+...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 15899999999999999999998756689999999854
No 101
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.96 E-value=3.6e-09 Score=109.16 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||.||++||..+++.+++.+|+|+||...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence 4799999999999999999998766789999999754
No 102
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=98.95 E-value=1.2e-09 Score=87.30 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=61.6
Q ss_pred ceeeeeeeeeecCeEEEEeecccCCcCCCC--ceEEEe----------ecCCccEEEEEE--ECCeEEEEEEEcCC--ch
Q psy1545 358 SFEMFTHMTKFFGYKVILLGLFNGQTLEND--YEILLR----------VTRGEEYIKLVM--KDGRMQGAVLIGET--EI 421 (454)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~~~~~~----------~~~~~~~~k~~~--~~~~i~G~~~~g~~--~~ 421 (454)
|..+|+.+ +++.+|+++.++...+ ++.... .....+|+|+++ ++++|+|+|++|+. +.
T Consensus 2 P~~vft~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~ 75 (110)
T PF02852_consen 2 PTVVFTDP------EIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASEL 75 (110)
T ss_dssp EEEEESSS------EEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHH
T ss_pred CEEEECCC------ceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHH
Confidence 44555555 9999999998876444 332211 113578999999 48999999999987 36
Q ss_pred HHHHHHHHhcCCCcchhhhhc-cCCCCC
Q psy1545 422 EEMCENLILNQLDLTDIADDL-LNPNID 448 (454)
Q Consensus 422 ~~~~~~~i~~~~~~~~~~~~~-~~~~~~ 448 (454)
++.++.+|++++|++++.+.+ .+|+++
T Consensus 76 I~~~~~ai~~~~t~~~l~~~~~~~Pt~s 103 (110)
T PF02852_consen 76 INELALAIQNGLTVEDLADDIFYHPTFS 103 (110)
T ss_dssp HHHHHHHHHTTSBHHHHHTSBSSSTSTG
T ss_pred HHHHHHHHHcCCCHHHHhCCeeeCCChh
Confidence 789999999999999875544 466654
No 103
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.93 E-value=4.6e-09 Score=103.14 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=55.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc--------cccccc-------ccccc-----------ccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK--------AVTKTV-------PVTKL-----------LSDIT 56 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~--------~~~~~~-------~~~~~-----------~~~~~ 56 (454)
|||+|||||+||+.||..+++. |.+|+|+|+++..+ +-.|.. .+... +..+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~--g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK--GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT--T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 7999999999999999999998 99999999996542 001100 00000 00000
Q ss_pred --------------------------------hhhhHHHHHhc-CcEEEc-ceEEEEeCccc---EEEeccCcEEEecEE
Q psy1545 57 --------------------------------VEETDANKFEG-LCTVIV-DTVAAIDPRVN---CVITEKQNRIKYKTL 99 (454)
Q Consensus 57 --------------------------------~~~~~~~~~~~-~i~~~~-~~v~~i~~~~~---~v~~~~g~~i~~d~l 99 (454)
+.......+.+ +++++. .+|..+..++. .|.++++..+.+|+|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 00112223334 899975 49999975443 466656779999999
Q ss_pred EEecCCCC
Q psy1545 100 CICTGASP 107 (454)
Q Consensus 100 viAtG~~p 107 (454)
|||||+..
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999754
No 104
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.89 E-value=1.5e-08 Score=102.96 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=40.4
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
...|+|.||...||++||+||+|+|+.......+... -.....|.-.|+.|+++++..
T Consensus 331 ~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 331 YTCGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred EecCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHhh
Confidence 3478999999999999999999999743323222100 012345777889999988753
No 105
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.88 E-value=2.1e-07 Score=90.68 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=75.8
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC--cEEecCEEEEeeccC-cCcccccCCC--------Ccee--
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVV-PNSNIQVHGT--------PFEL-- 288 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~D~vi~a~G~~-p~~~~~~~~~--------~l~~-- 288 (454)
+.+.+++.|++++.++.|.++...++ ....+..+++ .++.+|.+|+|+|.. .. . +++.. ++++
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~--~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~-g-L~a~l~~i~Epif~L~v~~ 344 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGN--RVTRIHTRNHRDIPLRADHFVLASGSFFSN-G-LVAEFDKIYEPIFGLDVLQ 344 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCC--eEEEEEecCCccceEECCEEEEccCCCcCH-H-HHhhcCceeeeccCCCcCC
Confidence 34555778999999999999886552 2344555665 479999999999998 32 1 11111 1111
Q ss_pred --c---------------CCCceEecccccc-----ccCceeecCcccccCCccccchhhccC-hHHHHHHHHHHHhhhc
Q psy1545 289 --A---------------PDCGIGVNELMQT-----SISNVYAAGDVCTPSWDLAKQWFQMRL-WTQAKHMGTYAAKCMV 345 (454)
Q Consensus 289 --~---------------~~g~i~vd~~~~t-----~~~~Iya~GD~~~~~~~~~~~~~~~~~-~~~A~~~g~~aa~~i~ 345 (454)
+ ..=++.+|+.||. ..+|+||+|-+.++..+. ..++ .-.|+..|..||++|+
T Consensus 345 ~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~-----~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 345 LPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPI-----FEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred CcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChH-----hcCCCchhHHHHHHHHHHhhC
Confidence 0 1124789999983 389999999998875332 1111 2368888888888774
No 106
>PRK08275 putative oxidoreductase; Provisional
Probab=98.88 E-value=9.6e-09 Score=105.97 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||.||++||..+++.+++.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4799999999999999999998756789999999865
No 107
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.86 E-value=2e-08 Score=104.41 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||.||++||..+++..+|.+|+|||+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 4799999999999999999998645789999999864
No 108
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.86 E-value=2e-08 Score=100.34 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=39.7
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
...|+|.||...||++||+||+|.|+.......+... -.....+.-.|+.|++++...
T Consensus 329 ~t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~-gnsl~~~lvfGr~Ag~~a~~~ 386 (433)
T PRK06175 329 YFMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLA-SNSLLEGLVFSKRGAEKINSE 386 (433)
T ss_pred eecCCEEECCCccccCCCeEecccccccCCCccccch-hHHHHHHHHHHHHHHHHHHHh
Confidence 3479999999999999999999999753222221100 011344677789999888653
No 109
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=1.7e-08 Score=104.23 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||+|.||++||..+++. |.+|+|+||.+.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~--G~~V~lveK~~~ 39 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASA--GFKVAVISKVFP 39 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHC--CCcEEEEEccCC
Confidence 57999999999999999999997 899999999754
No 110
>PRK09897 hypothetical protein; Provisional
Probab=98.83 E-value=6.5e-08 Score=98.03 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=86.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc-cc-ccc---------c-----------ccccccc-------
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK-AV-TKT---------V-----------PVTKLLS------- 53 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~-~~-~~~---------~-----------~~~~~~~------- 53 (454)
++|+|||||++|+++|.+|.+.....+|+|+|++..++ +. +.. + .+..+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999999875567999999975443 11 110 0 0000000
Q ss_pred -----------c--c---chh----hhHHH----HHhc-C--cEEE-cceEEEEeCccc--EEEecc-CcEEEecEEEEe
Q psy1545 54 -----------D--I---TVE----ETDAN----KFEG-L--CTVI-VDTVAAIDPRVN--CVITEK-QNRIKYKTLCIC 102 (454)
Q Consensus 54 -----------~--~---~~~----~~~~~----~~~~-~--i~~~-~~~v~~i~~~~~--~v~~~~-g~~i~~d~lviA 102 (454)
+ + .+. ...++ .+.. + +.++ ..+|+.++.... .+.+.+ +..+.+|+||+|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLA 161 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA 161 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEEC
Confidence 0 0 000 11111 1122 4 5655 448999876544 444434 467999999999
Q ss_pred cCCCCCCCCCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHhc
Q psy1545 103 TGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS 155 (454)
Q Consensus 103 tG~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l~ 155 (454)
||..+..+. ......+.+..+...+ ..+ .+.+|+|+|.|.++++.+..|.
T Consensus 162 tGh~~p~~~-~~~~~yi~~pw~~~~~-~~i-~~~~V~I~GtGLt~iD~v~~Lt 211 (534)
T PRK09897 162 TGHVWPDEE-EATRTYFPSPWSGLME-AKV-DACNVGIMGTSLSGLDAAMAVA 211 (534)
T ss_pred CCCCCCCCC-hhhccccCCCCcchhh-cCC-CCCeEEEECCCHHHHHHHHHHH
Confidence 997432111 1111111222222211 122 3689999999999999997764
No 111
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.81 E-value=3.1e-08 Score=101.76 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||+|.||++||..+++. |.+|+|+|+.+..
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~--G~~VilleK~~~~ 51 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRA--GRRVLVVTKAALD 51 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCeEEEEEccCCC
Confidence 57999999999999999999997 8899999998654
No 112
>PLN02463 lycopene beta cyclase
Probab=98.79 E-value=4.3e-08 Score=97.77 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=69.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc----c-------------cc-----------cc-
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP----V-------------TK-----------LL- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~----~-------------~~-----------~~- 52 (454)
.+||+|||||+||+++|..|++. |.+|+|+|+.+......++.. + .. ..
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~--Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~ 105 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEA--GLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLD 105 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHC--CCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcccc
Confidence 37999999999999999999997 999999999764221100000 0 00 00
Q ss_pred ccc------chhhhHHHHHhc-CcEEEcceEEEEeCccc--EEEeccCcEEEecEEEEecCCCCC
Q psy1545 53 SDI------TVEETDANKFEG-LCTVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 53 ~~~------~~~~~~~~~~~~-~i~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
..+ .+.....+...+ +++++.++|+.++..+. .|++++|.++++|.||.|+|....
T Consensus 106 ~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 106 RPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred CcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 000 011112222333 89988788888875443 567778889999999999998654
No 113
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=1.6e-07 Score=97.47 Aligned_cols=38 Identities=21% Similarity=0.362 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCC-CCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHP-GESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~-g~~v~lie~~~~~ 39 (454)
++||+|||||.||++||..+++.++ +.+|+|+|+....
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPM 43 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCC
Confidence 5799999999999999999999821 1799999997653
No 114
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.78 E-value=1.9e-08 Score=104.39 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
||||||||.||++||..+++. |.+|+|+|+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~--G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA--GLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence 799999999999999999998 899999999764
No 115
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.75 E-value=8.9e-08 Score=93.33 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=45.5
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcE-EecCEEEEeeccCcCcccccCCCCcee
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-HACDIVVSAIGVVPNSNIQVHGTPFEL 288 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~-~~~D~vi~a~G~~p~~~~~~~~~~l~~ 288 (454)
.++|+++++|++|+.++..++ +...+.+++|++ ++|+.||.|.|..... ++...|+..
T Consensus 164 ~~~g~~i~ln~eV~~i~~~~d--g~~~~~~~~g~~~~~ak~Vin~AGl~Ad~--la~~~g~~~ 222 (429)
T COG0579 164 QANGVELRLNTEVTGIEKQSD--GVFVLNTSNGEETLEAKFVINAAGLYADP--LAQMAGIPE 222 (429)
T ss_pred HHcCCEEEecCeeeEEEEeCC--ceEEEEecCCcEEEEeeEEEECCchhHHH--HHHHhCCCc
Confidence 447999999999999998774 256677888866 9999999999997654 556555443
No 116
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.73 E-value=1e-07 Score=87.10 Aligned_cols=119 Identities=16% Similarity=0.026 Sum_probs=73.6
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCc--EEecCEEEEeeccCcCcc----------cccCCCCceec
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH--THACDIVVSAIGVVPNSN----------IQVHGTPFELA 289 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~--~~~~D~vi~a~G~~p~~~----------~~~~~~~l~~~ 289 (454)
+...+++.|..+.++-.|.+.+-.+ +++..+.+.+.. .+.+|..|+|+|.--... +++... +.-+
T Consensus 264 L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ld-i~~~ 340 (421)
T COG3075 264 LQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLD-ILQT 340 (421)
T ss_pred HHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcc-cccC
Confidence 4566688899999999999888765 345666667764 466899999998754322 011110 0000
Q ss_pred C-----------------CCceEecccccc-----ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 290 P-----------------DCGIGVNELMQT-----SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 290 ~-----------------~g~i~vd~~~~t-----~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
. .=++.+|+.+|. ..+|+||||-+.++..+.... --.-.|+..|-.||..|+.+
T Consensus 341 ~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----cGsGVaivta~~aa~qi~~~ 416 (421)
T COG3075 341 ADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----CGSGVAIVTALHAAEQIAER 416 (421)
T ss_pred cchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----CCcchHHHHHHHHHHHHHHH
Confidence 0 113667777774 358999999998875332100 01234667777777777654
No 117
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=1.2e-07 Score=99.10 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||+|||||.||++||..+++. |.+|+|+|+..
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~--G~~VilieK~~ 68 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGEL--GYNVKVFCYQD 68 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCcEEEEecCC
Confidence 47999999999999999999997 88999999754
No 118
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.72 E-value=3.7e-08 Score=97.58 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=35.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|++||+|||||.+|+++|++|+++.++.+|+|+|+.+..
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 789999999999999999999998678999999998643
No 119
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.72 E-value=4.9e-08 Score=106.11 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||.||++||..+++. |.+|+|+|+.+.
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~--G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEH--GANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHC--CCeEEEEecccc
Confidence 47999999999999999999987 899999999864
No 120
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.71 E-value=1.7e-07 Score=96.25 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=40.9
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
...|+|.||...||++|++||+|+|+.......+... -.....|.-.|+.|+++++..
T Consensus 351 ~t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 351 YTCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred EecCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999999999753333322110 012345777899999988764
No 121
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.70 E-value=3.5e-07 Score=93.34 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=38.9
Q ss_pred CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 290 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
..|+|.||...||++|++||+|+|+.......+... -.....+.-.|+.|++++...
T Consensus 331 ~~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 331 LMGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred EcCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999753322222100 012344666788888888654
No 122
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.70 E-value=1.1e-07 Score=94.08 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=66.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccccc----c-------------cccc----cc--------
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVP----V-------------TKLL----SD-------- 54 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~----~-------------~~~~----~~-------- 54 (454)
||+|||||+||+++|..|++. |.+|+|||+++..+....+.. + .... ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~--g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP--GLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 799999999999999999987 999999998864432111100 0 0000 00
Q ss_pred c------chhhhHHHHHhc-CcEEEcceEEEEeCc-c--cEEEeccCcEEEecEEEEecCCCC
Q psy1545 55 I------TVEETDANKFEG-LCTVIVDTVAAIDPR-V--NCVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 55 ~------~~~~~~~~~~~~-~i~~~~~~v~~i~~~-~--~~v~~~~g~~i~~d~lviAtG~~p 107 (454)
+ .+.+...+...+ +++++.+++..+..+ . ..|++.+|.+++++.||.|+|..+
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 001111222233 788887788887654 2 356666777899999999999865
No 123
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.68 E-value=1.3e-07 Score=89.77 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~--g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK--GLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCC
Confidence 6999999999999999999998 8999999998754
No 124
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.68 E-value=2e-08 Score=104.14 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||||||+|++|++||..+++. |.+|+|+|+.+..++.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~--G~~v~llEk~~~~gG~ 47 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKL--GLDVVVLEKEPVFGGT 47 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc--CCeEEEEecCCCCCCc
Confidence 57999999999999999999998 8899999999876543
No 125
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.68 E-value=3e-07 Score=95.04 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHh----hcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLA----FLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~----~~~~g~~v~lie~~~~ 38 (454)
||||||||.||++||..++ +. |.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~--G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK--GLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC--CCeEEEEEccCC
Confidence 7999999999999999998 55 889999999764
No 126
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.66 E-value=1.6e-07 Score=86.82 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||+|||||+||++||+.|++. |.+|+|+|+.+..+
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~--G~~V~liEk~~~~G 61 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKA--GLKVAVFERKLSFG 61 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCC
Confidence 58999999999999999999997 99999999987654
No 127
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.65 E-value=2.6e-07 Score=90.75 Aligned_cols=104 Identities=21% Similarity=0.186 Sum_probs=68.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc----cccc--ccc-------cccc--------------c--
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV----TKTV--PVT-------KLLS--------------D-- 54 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~----~~~~--~~~-------~~~~--------------~-- 54 (454)
||||||||+||+++|..|++..++.+|+|||+++..... |... ... ..+. .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 899999999999999999555569999999987654111 1110 000 0000 0
Q ss_pred c------chhhhHHHHHhc-CcEEEcceEEEEeCccc--EEEeccCcEEEecEEEEecCCCC
Q psy1545 55 I------TVEETDANKFEG-LCTVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 55 ~------~~~~~~~~~~~~-~i~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p 107 (454)
+ ++.....+.+.. ++.++.++|+.++.... .|.+.+|.+++++.||-|+|..+
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 0 000111222222 67777889999987765 66788899999999999999543
No 128
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.63 E-value=1.6e-07 Score=93.03 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=35.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
|+|||+||||||||++||+.|++. |.+|+|+|+.+.++
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~--G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA--GLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc--CCeEEEEecCCCCC
Confidence 589999999999999999999998 79999999987654
No 129
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.62 E-value=2.9e-07 Score=91.11 Aligned_cols=37 Identities=32% Similarity=0.596 Sum_probs=34.1
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|++||+|||||++|+++|..|++. |.+|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS--GLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCc
Confidence 678999999999999999999998 8999999998654
No 130
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.62 E-value=2.4e-07 Score=89.32 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=61.7
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEE-CCCCccccccccccc----------------------------------
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLV-TPSGIVKAVTKTVPV---------------------------------- 48 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~li-e~~~~~~~~~~~~~~---------------------------------- 48 (454)
||+|||||.||+.||+.+++. |.+|+|+ .+.+.+......+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~--G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN 78 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM--GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLN 78 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccc
Confidence 799999999999999999999 9999999 333222111100000
Q ss_pred -cccc----c----c-cchhhhHHHHHhc--CcEEEcceEEEEeCccc---EEEeccCcEEEecEEEEecCC
Q psy1545 49 -TKLL----S----D-ITVEETDANKFEG--LCTVIVDTVAAIDPRVN---CVITEKQNRIKYKTLCICTGA 105 (454)
Q Consensus 49 -~~~~----~----~-~~~~~~~~~~~~~--~i~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~ 105 (454)
++.. . + ..+.....+.+.. ++++++++|+.+..++. -|.+.+|..+.+|.+|+|||.
T Consensus 79 ~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 79 RSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred ccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0000 0 0 0011122233334 89999999999976554 356778899999999999997
No 131
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.61 E-value=2.8e-07 Score=93.67 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=66.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-cccccccccc---------------cccc----c---------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVKAVTKTVP---------------VTKL----L--------- 52 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~~~~~~~~---------------~~~~----~--------- 52 (454)
+|||||||||+||+.||..+++. |.+|+|+|+.. .++.....+. +... .
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~--G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ 81 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARM--GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRM 81 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHc--CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceee
Confidence 58999999999999999999998 99999999873 2221110000 0000 0
Q ss_pred ------c-------ccc---hhhhHHHHHhc--CcEEEcceEEEEeCccc---EEEeccCcEEEecEEEEecCCC
Q psy1545 53 ------S-------DIT---VEETDANKFEG--LCTVIVDTVAAIDPRVN---CVITEKQNRIKYKTLCICTGAS 106 (454)
Q Consensus 53 ------~-------~~~---~~~~~~~~~~~--~i~~~~~~v~~i~~~~~---~v~~~~g~~i~~d~lviAtG~~ 106 (454)
+ ..+ +.....+.+.. +++++.++|..+..++. .|.+.+|..+.++.+|+|||..
T Consensus 82 ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 82 LNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred cccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 0 000 00111122233 78888888888754433 3566788899999999999974
No 132
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.60 E-value=1.5e-07 Score=97.76 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=30.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||.||++||.++++ +.+|+|+|+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~---~~~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP---RARTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh---CCCEEEEeCCCC
Confidence 4799999999999999999986 379999999754
No 133
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.59 E-value=5.4e-07 Score=92.66 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+||||||+|.||++||.+++ . |.+|+|||+.+..
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~--G~~V~lieK~~~~ 43 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-S--HLRVGLITKDTLK 43 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-c--CCCEEEEEccCCC
Confidence 479999999999999999996 3 7899999998654
No 134
>PRK06834 hypothetical protein; Provisional
Probab=98.58 E-value=4.9e-07 Score=91.79 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=67.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc--c----ccc------------------------ccccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA--V----TKT------------------------VPVTK 50 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~--~----~~~------------------------~~~~~ 50 (454)
-++||+||||||+|+++|..|++. |.+|+|+|+.+.... . .+. ..+..
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~--G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA--GVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeee
Confidence 058999999999999999999998 999999998753210 0 000 00000
Q ss_pred ---cccc------c--chhh-----hHHHHHhc-CcEEEcc-eEEEEeCccc--EEEeccCcEEEecEEEEecCCCCC
Q psy1545 51 ---LLSD------I--TVEE-----TDANKFEG-LCTVIVD-TVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 51 ---~~~~------~--~~~~-----~~~~~~~~-~i~~~~~-~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
.... + .+.+ ...+.+.+ +++++.+ +++.+..+.. .+++.+|+++++|+||.|.|.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 80 TRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred EecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 0000 0 0011 11222333 7888755 8888765443 455566778999999999998653
No 135
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.58 E-value=4.7e-07 Score=90.17 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~ 35 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGS--GLEVLLLDGGP 35 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcC--CCEEEEEcCCC
Confidence 678999999999999999999998 89999999876
No 136
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.58 E-value=4.5e-07 Score=90.22 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=32.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||++|+++|..|++.+++.+|+|+|+.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 899999999999999999999855699999999753
No 137
>PRK06847 hypothetical protein; Provisional
Probab=98.57 E-value=4.8e-07 Score=89.09 Aligned_cols=105 Identities=22% Similarity=0.208 Sum_probs=67.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc---c------------------------ccc---c---
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT---K------------------------TVP---V--- 48 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~---~------------------------~~~---~--- 48 (454)
..||+|||||++|+++|..|++. |.+|+|+|+.+...... . ... +
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~--g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~ 81 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA--GIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPD 81 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCC
Confidence 47899999999999999999998 89999999875421000 0 000 0
Q ss_pred cccc-------------c-cc-----chhhhHHHHHhc-CcEEEcc-eEEEEeCccc--EEEeccCcEEEecEEEEecCC
Q psy1545 49 TKLL-------------S-DI-----TVEETDANKFEG-LCTVIVD-TVAAIDPRVN--CVITEKQNRIKYKTLCICTGA 105 (454)
Q Consensus 49 ~~~~-------------~-~~-----~~~~~~~~~~~~-~i~~~~~-~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~ 105 (454)
...+ . .. .+.....+.+.+ +++++.+ +++.++.+.. .+.+.+|+++.+|.||.|+|.
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~ 161 (375)
T PRK06847 82 GTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGL 161 (375)
T ss_pred CCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCC
Confidence 0000 0 00 011112222333 7888755 8888765443 456668889999999999997
Q ss_pred CCC
Q psy1545 106 SPR 108 (454)
Q Consensus 106 ~p~ 108 (454)
...
T Consensus 162 ~s~ 164 (375)
T PRK06847 162 YSK 164 (375)
T ss_pred Ccc
Confidence 643
No 138
>PRK09126 hypothetical protein; Provisional
Probab=98.57 E-value=3.9e-07 Score=90.33 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|++||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS--GLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCCc
Confidence 579999999999999999999998 999999999764
No 139
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.55 E-value=6.9e-07 Score=90.51 Aligned_cols=96 Identities=17% Similarity=0.288 Sum_probs=70.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ ..+......+.+.+ +++++.+ ++..++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----~~~~~~~~~~~l~~~gi~i~~~~~v~~i~ 238 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL--GSKVTVIEMLDRILP-----GE-----DAEVSKVVAKALKKKGVKILTNTKVTAVE 238 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCCCCC-----CC-----CHHHHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence 4799999999999999999998 889999999875421 11 11223334455656 9999865 888887
Q ss_pred Cccc--EEEeccC--cEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITEKQ--NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~~g--~~i~~d~lviAtG~~p~~~ 110 (454)
.... .+.+.+| .++.+|.+++|+|.+|...
T Consensus 239 ~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 239 KNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred EeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 5443 3444455 4799999999999999876
No 140
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.52 E-value=4e-07 Score=86.20 Aligned_cols=137 Identities=16% Similarity=0.251 Sum_probs=89.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc----------C-----------CcchhhhHHHhhccCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL----------D-----------PGAAEFFQDSINKTNTA 191 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~----------d-----------~~~~~~~~~~l~~~~~~ 191 (454)
-..++|||||+.|+-+|..+. |.+|.++++.+.+-.+++ + |+-..++...|.+.+..
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 357999999999999998886 999999998776543321 1 11112222222221222
Q ss_pred ChhhhhhhcccccCCCCCCCCCCc-cccc--cc-cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEE
Q psy1545 192 KPETIFKRMRYNTGGEKGPSLGPD-WHTQ--VN-LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIV 267 (454)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~--~~-~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~v 267 (454)
+-.-...+..+...++-.+.+-|+ .... +. +...+++.||+++++++|.+++.+++ ...+.+++|+++.||.+
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~---~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS---GFRLDTSSGETVKCDSL 159 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc---eEEEEcCCCCEEEccEE
Confidence 222233344444444433333333 3322 22 45667889999999999999998763 68899999989999999
Q ss_pred EEeeccC
Q psy1545 268 VSAIGVV 274 (454)
Q Consensus 268 i~a~G~~ 274 (454)
|+|+|-.
T Consensus 160 ilAtGG~ 166 (408)
T COG2081 160 ILATGGK 166 (408)
T ss_pred EEecCCc
Confidence 9999943
No 141
>PRK08244 hypothetical protein; Provisional
Probab=98.52 E-value=6.6e-07 Score=91.40 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|++||+||||||+|+++|..|++. |.+|+|||+.+.
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~--G~~v~viEr~~~ 36 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALA--GVKTCVIERLKE 36 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence 789999999999999999999998 999999999754
No 142
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.52 E-value=8.3e-07 Score=87.96 Aligned_cols=35 Identities=34% Similarity=0.538 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~--G~~v~liE~~~~ 40 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADA--GLSVALVEGREP 40 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC--CCEEEEEeCCCC
Confidence 48999999999999999999998 999999999753
No 143
>PRK06184 hypothetical protein; Provisional
Probab=98.51 E-value=7.1e-07 Score=91.36 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=32.5
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
=++||+||||||+|+++|..|++. |.+|+|||+.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~--Gi~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR--GVSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence 058999999999999999999998 999999999753
No 144
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.51 E-value=1.6e-06 Score=87.18 Aligned_cols=97 Identities=16% Similarity=0.237 Sum_probs=70.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||++|+.+|..+++. +.+|+++++.+.+.. .. +.+......+.+.+ +++++.+ +++.++
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----~~~~~~~~~~~l~~~GI~i~~~~~V~~i~ 225 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL--GSKVTVLDAASTILP-----RE-----EPSVAALAKQYMEEDGITFLLNAHTTEVK 225 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCccCC-----CC-----CHHHHHHHHHHHHHcCCEEEcCCEEEEEE
Confidence 4799999999999999999997 889999999875421 00 11222333445555 9999865 888887
Q ss_pred CcccEEE-eccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNCVI-TEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~v~-~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+...+. ..+++++.||.+++|+|.+|....
T Consensus 226 ~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 226 NDGDQVLVVTEDETYRFDALLYATGRKPNTEP 257 (438)
T ss_pred ecCCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence 6544332 235678999999999999988654
No 145
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.50 E-value=8.8e-07 Score=88.58 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+||||||||++||+.|++. |.+|+|+|+.+..
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~--G~~V~llEr~~~~ 40 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE--GAQVLVIERGNSA 40 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC--CCeEEEEEcCCCC
Confidence 48999999999999999999998 9999999998654
No 146
>PLN02697 lycopene epsilon cyclase
Probab=98.50 E-value=6.2e-07 Score=91.02 Aligned_cols=104 Identities=20% Similarity=0.238 Sum_probs=66.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc---ccccc--ccc-----------------cc----c-cc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA---VTKTV--PVT-----------------KL----L-SD 54 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~---~~~~~--~~~-----------------~~----~-~~ 54 (454)
.+||+||||||||+++|..|++. |++|+|||+...... .|... .+. .. . ..
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~--Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~ 185 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKL--GLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA 185 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhC--CCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence 37999999999999999999998 999999998632211 11000 000 00 0 00
Q ss_pred cc-hh-----hhHHHHHhc-CcEEEcceEEEEeCccc--E-EEeccCcEEEecEEEEecCCCC
Q psy1545 55 IT-VE-----ETDANKFEG-LCTVIVDTVAAIDPRVN--C-VITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 55 ~~-~~-----~~~~~~~~~-~i~~~~~~v~~i~~~~~--~-v~~~~g~~i~~d~lviAtG~~p 107 (454)
+. +. ....+...+ +++++.++|+.+..+.. . +.+.+|.++.++.||.|+|...
T Consensus 186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 00 11 112222333 88887778888864332 2 3456778899999999999865
No 147
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.50 E-value=1e-06 Score=81.14 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
.+||+|||||++|++||+.|++. +.+|+|+|+++.++
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~--G~~V~vlEk~~~~G 57 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKN--GLKVCVLERSLAFG 57 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence 58999999999999999999998 89999999997654
No 148
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.50 E-value=8.5e-07 Score=84.35 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=70.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC-CCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP-SLG 213 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 213 (454)
+++|||||+.|+++|..|. |.+|+++++.+. -..+.... .+.. ...+.. ..+
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~-------~~~~-----------------~~~~~~~~~~ 56 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTT-------EVEN-----------------YPGFPEGISG 56 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-Ccceeecc-------cccc-----------------cCCCCCCCCh
Confidence 5899999999999999986 999999997651 10000000 0000 000000 000
Q ss_pred CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 214 PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 214 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++.. .+.+.+++.|+++++ +.+.+++..++ .+.+.++++.++.+|.+|+|+|.+|+..
T Consensus 57 ~~~~~--~l~~~~~~~gv~~~~-~~v~~v~~~~~---~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 57 PELME--KMKEQAVKFGAEIIY-EEVIKVDLSDR---PFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred HHHHH--HHHHHHHHcCCeEEE-EEEEEEEecCC---eeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 01111 112233457999998 78999887653 4667778888999999999999998754
No 149
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.49 E-value=8.8e-07 Score=87.50 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=31.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
-.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~--G~~v~l~E~~~ 36 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQ--GRSVAVIEGGE 36 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC--CCcEEEEcCCC
Confidence 047999999999999999999998 99999999864
No 150
>PRK08013 oxidoreductase; Provisional
Probab=98.49 E-value=9.7e-07 Score=87.68 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=32.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+++||+||||||+|+++|..|++. |.+|+|+|+.+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~--G~~v~viE~~~~ 37 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGS--GLRVAVLEQRVP 37 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhC--CCEEEEEeCCCC
Confidence 158999999999999999999998 999999998764
No 151
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.49 E-value=1.8e-07 Score=96.46 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||||||+|++|++||..+++. |.+|+|||+.+..++
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~--G~~v~llEk~~~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHR--GLSTVVVEKAPHYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCCCCc
Confidence 47999999999999999999998 999999999876553
No 152
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.48 E-value=7.9e-07 Score=90.85 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=39.0
Q ss_pred CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCC
Q psy1545 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGA 347 (454)
Q Consensus 290 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (454)
..|+|.||...||++|++||+|+|+.......+... -.....+.-.|+.|+++++..
T Consensus 340 t~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 340 HMGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred EcCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999743333322110 011234567788888888754
No 153
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.48 E-value=1.1e-06 Score=87.01 Aligned_cols=35 Identities=37% Similarity=0.543 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~--G~~v~liE~~~~ 41 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARA--GASVALVAPEPP 41 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcC--CCeEEEEeCCCC
Confidence 47999999999999999999998 899999999754
No 154
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.47 E-value=1.1e-06 Score=75.00 Aligned_cols=100 Identities=20% Similarity=0.226 Sum_probs=63.6
Q ss_pred EEECCCHHHHHHHHHHhhc---CCCCeEEEECCCCcccc-ccccc-----------------------cccccccccc--
Q psy1545 6 LIIGGGIAGVSCVEGLAFL---HPGESIGLVTPSGIVKA-VTKTV-----------------------PVTKLLSDIT-- 56 (454)
Q Consensus 6 vIIGgG~aGl~aA~~l~~~---~~g~~v~lie~~~~~~~-~~~~~-----------------------~~~~~~~~~~-- 56 (454)
+|||||++|++++.+|.+. .+..+|+|+|+++...+ .+... .|..++....
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999987 35779999999766412 22110 0000000000
Q ss_pred ---------h-----hhhHH----HHHh---c-C--cEEEcceEEEEeCccc--EEEeccCcEEEecEEEEecCC
Q psy1545 57 ---------V-----EETDA----NKFE---G-L--CTVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGA 105 (454)
Q Consensus 57 ---------~-----~~~~~----~~~~---~-~--i~~~~~~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~ 105 (454)
+ .-+++ +.+. . + +.++..+|+.+++... .+.+.+|..+.+|+||+|||.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 0 00111 1111 1 3 4556789999876543 577788999999999999995
No 155
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.46 E-value=1.1e-06 Score=87.99 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|++||+||||||||++||..|++. |.+|+|+|+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~--G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKG--GIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCC
Confidence 468999999999999999999998 99999999874
No 156
>PRK05868 hypothetical protein; Validated
Probab=98.46 E-value=4.7e-06 Score=81.85 Aligned_cols=47 Identities=17% Similarity=0.311 Sum_probs=40.2
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.|+++++++++++++.+++ .+.+.+++|+++++|+||-|-|.+....
T Consensus 117 ~~v~i~~~~~v~~i~~~~~---~v~v~~~dg~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 117 PSVEYLFDDSISTLQDDGD---SVRVTFERAAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred CCcEEEeCCEEEEEEecCC---eEEEEECCCCeEEeCEEEECCCCCchHH
Confidence 6899999999999986543 5778899999999999999999887654
No 157
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.46 E-value=1.3e-06 Score=86.36 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=67.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC-ccc-------------------cc-cccc-----c-------
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-IVK-------------------AV-TKTV-----P------- 47 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~-~~~-------------------~~-~~~~-----~------- 47 (454)
|.+||+|||||++|+++|..|++. |.+|+|||+.+ ... +. .... .
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~--G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARA--GLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhC--CCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 468999999999999999999999 89999999972 210 00 0000 0
Q ss_pred ccc------ccc------------ccchhhhHHHHHhc--CcEEEcc-eEEEEeCcc--cEEEec-cCcEEEecEEEEec
Q psy1545 48 VTK------LLS------------DITVEETDANKFEG--LCTVIVD-TVAAIDPRV--NCVITE-KQNRIKYKTLCICT 103 (454)
Q Consensus 48 ~~~------~~~------------~~~~~~~~~~~~~~--~i~~~~~-~v~~i~~~~--~~v~~~-~g~~i~~d~lviAt 103 (454)
... ... ..++.....+.... +++++.+ +++.++.+. ..+++. +|+++.+|.||-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 000 000 00011122233333 5898865 888887654 356677 88899999999999
Q ss_pred CCC
Q psy1545 104 GAS 106 (454)
Q Consensus 104 G~~ 106 (454)
|.+
T Consensus 159 G~~ 161 (387)
T COG0654 159 GAN 161 (387)
T ss_pred CCc
Confidence 963
No 158
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.45 E-value=8e-07 Score=90.68 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||||||||.||+.||..+++. +.+|+|+|+.+..
T Consensus 6 ~~DvvVIG~G~AGl~AAi~aa~~--g~~V~l~~K~~~~ 41 (562)
T COG1053 6 EFDVVVIGGGGAGLRAAIEAAEA--GLKVALLSKAPPK 41 (562)
T ss_pred cCCEEEECCcHHHHHHHHHHHhc--CCcEEEEEccccC
Confidence 58999999999999999999998 7999999997543
No 159
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.44 E-value=3.9e-07 Score=89.93 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+|||||.+|+++|++|++. |.+|+|+|+.+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~--g~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH--GKKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCC
Confidence 5999999999999999999998 8899999997653
No 160
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.44 E-value=1e-06 Score=85.81 Aligned_cols=33 Identities=42% Similarity=0.576 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
||+|||||++|+++|++|++. |.+|+|+|++..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT--TSEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHHC--CCeEEEEeeccc
Confidence 799999999999999999997 999999999843
No 161
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.42 E-value=1.9e-06 Score=84.28 Aligned_cols=102 Identities=19% Similarity=0.227 Sum_probs=64.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc--cccc--cccc----cc--------ccc------------
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV--TKTV--PVTK----LL--------SDI------------ 55 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~--~~~~--~~~~----~~--------~~~------------ 55 (454)
||+|||||+||+++|..|++..++.+|+++|+.+..+.- |.+. .... .+ ...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 799999999999999999986568999999998744321 1110 0000 00 000
Q ss_pred ----chh-hhHHHHHhc--CcEEE-cceEEEEeCcccEEEeccCcEEEecEEEEecCCCC
Q psy1545 56 ----TVE-ETDANKFEG--LCTVI-VDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 56 ----~~~-~~~~~~~~~--~i~~~-~~~v~~i~~~~~~v~~~~g~~i~~d~lviAtG~~p 107 (454)
.+. ....+.+.+ +..++ ..+|..++++. |++.+|+++++|.||-|.|.++
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~--v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG--VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE--EEECCCCEEEeeEEEECCCCCC
Confidence 000 111222222 22233 55888886654 6667888999999999999764
No 162
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.41 E-value=5e-06 Score=84.10 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=33.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||.+|+++|++|++..|+.+|+|+|+++.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 599999999999999999999878999999999763
No 163
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.41 E-value=1.8e-06 Score=85.33 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
|||+||||||||+++|+.|++. |.+|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~--G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA--GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEECC
Confidence 6999999999999999999998 9999999997
No 164
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.41 E-value=1.9e-06 Score=85.71 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~--G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES--DLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC--CCEEEEEcCC
Confidence 47999999999999999999998 9999999985
No 165
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.41 E-value=1.6e-06 Score=85.99 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+.||+|||||++|+++|..|++. |.+|+|+|+.+..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCccc
Confidence 57999999999999999999998 9999999998643
No 166
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.40 E-value=1.1e-06 Score=88.64 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||..|+++|+.|++..+..+|+|+|+.+.
T Consensus 45 ~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 45 VYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred cccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 4899999999999999999999856689999999864
No 167
>PRK07190 hypothetical protein; Provisional
Probab=98.40 E-value=2.3e-06 Score=86.85 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||+||||||+|+++|..|++. |.+|+|||+.+.
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~--Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLC--GLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHc--CCCEEEEeCCCc
Confidence 47999999999999999999998 999999999854
No 168
>PRK10015 oxidoreductase; Provisional
Probab=98.39 E-value=2.3e-06 Score=85.56 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=33.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+||||||||++||+.|++. |.+|+|||+.+.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~--G~~VlliEr~~~~ 40 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARA--GLDVLVIERGDSA 40 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCC
Confidence 38999999999999999999998 9999999998654
No 169
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.39 E-value=2.1e-06 Score=64.11 Aligned_cols=76 Identities=24% Similarity=0.284 Sum_probs=55.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEeC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAIDP 81 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~~ 81 (454)
+++|||||+.|+-+|..|++. +.+|+||++.+.+. +. .+.+......+.+.+ +++++.+ .+..++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~~~-----~~-----~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDRLL-----PG-----FDPDAAKILEEYLRKRGVEVHTNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSSSS-----TT-----SSHHHHHHHHHHHHHTTEEEEESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccchhh-----hh-----cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEE
Confidence 589999999999999999998 89999999998752 11 112333444556666 9999755 8888876
Q ss_pred cccE--EEeccC
Q psy1545 82 RVNC--VITEKQ 91 (454)
Q Consensus 82 ~~~~--v~~~~g 91 (454)
+... |+++||
T Consensus 69 ~~~~~~V~~~~g 80 (80)
T PF00070_consen 69 DGDGVEVTLEDG 80 (80)
T ss_dssp ETTSEEEEEETS
T ss_pred eCCEEEEEEecC
Confidence 6543 666554
No 170
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.38 E-value=3e-06 Score=83.94 Aligned_cols=34 Identities=29% Similarity=0.486 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~--G~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQH--GFSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcC--CCEEEEEcCCC
Confidence 48999999999999999999998 89999999875
No 171
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.38 E-value=8.2e-07 Score=89.80 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=34.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
+.||+|||||++|+++|++|++..+|.+|+|+|++....
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~ 62 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGA 62 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcccc
Confidence 479999999999999999999986789999999986543
No 172
>PRK06753 hypothetical protein; Provisional
Probab=98.36 E-value=3.2e-06 Score=83.21 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 3899999999999999999998 999999999865
No 173
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.36 E-value=3.1e-06 Score=83.94 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhc-CCCCeEEEECCC
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFL-HPGESIGLVTPS 36 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~-~~g~~v~lie~~ 36 (454)
+++||+|||||++|+++|..|++. ..|.+|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 168999999999999999999884 238899999994
No 174
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.35 E-value=2.8e-06 Score=84.19 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+||||||||++||..|++. |.+|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~--G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA--GIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC--CCcEEEEecCCC
Confidence 5899999999999999999998 999999998743
No 175
>PRK07236 hypothetical protein; Provisional
Probab=98.35 E-value=4.2e-06 Score=82.78 Aligned_cols=103 Identities=13% Similarity=0.027 Sum_probs=64.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc----cc-ccc---------cccc------------c--c
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV----TK-TVP---------VTKL------------L--S 53 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~----~~-~~~---------~~~~------------~--~ 53 (454)
.++|+|||||++|+++|..|++. |.+|+|+|+.+..... .. .+. +... . .
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 83 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD 83 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence 57999999999999999999998 9999999998632100 00 000 0000 0 0
Q ss_pred c-----cc------hhhhHHHHHhc---CcEEEcc-eEEEEeCccc--EEEeccCcEEEecEEEEecCCC
Q psy1545 54 D-----IT------VEETDANKFEG---LCTVIVD-TVAAIDPRVN--CVITEKQNRIKYKTLCICTGAS 106 (454)
Q Consensus 54 ~-----~~------~~~~~~~~~~~---~i~~~~~-~v~~i~~~~~--~v~~~~g~~i~~d~lviAtG~~ 106 (454)
. .. -.....+.+.+ +++++.+ +++.+..+.. .+.+++|+++.+|.||.|-|.+
T Consensus 84 g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~ 153 (386)
T PRK07236 84 GRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGR 153 (386)
T ss_pred CCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 0 00 00111122222 4566644 7888865443 4667788899999999999964
No 176
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.34 E-value=3.3e-06 Score=84.35 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||+||+++|..|++. |.+|+|+|+.+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS--GLRIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC--CCEEEEEecCCc
Confidence 47999999999999999999998 999999999764
No 177
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.34 E-value=5.7e-06 Score=81.48 Aligned_cols=37 Identities=22% Similarity=0.103 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|++||+|||||++|+++|++|++. |.+|+|+|++...
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~--g~~V~lie~~~~~ 38 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR--GLRVLGLDRFMPP 38 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC--CCeEEEEecccCC
Confidence 468999999999999999999998 8999999998654
No 178
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.34 E-value=7.8e-06 Score=82.57 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=36.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC--CCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH--PGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~--~g~~v~lie~~~~~~~~~ 43 (454)
+.+++|||||.|||+||..|++.+ +|.+|+|+|+++..++..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 368999999999999999999863 578999999999877644
No 179
>PRK06185 hypothetical protein; Provisional
Probab=98.34 E-value=3.5e-06 Score=83.92 Aligned_cols=34 Identities=26% Similarity=0.292 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~--G~~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARA--GVDVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecCC
Confidence 58999999999999999999998 99999999874
No 180
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.32 E-value=2.4e-06 Score=88.70 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||+|.+|+++|..+++. |.+|+|||+.+..++
T Consensus 12 ~~dvvvvG~G~aG~~aa~~~~~~--g~~v~~iek~~~~gg 49 (581)
T PRK06134 12 ECDVLVIGSGAAGLSAAVTAAWH--GLKVIVVEKDPVFGG 49 (581)
T ss_pred ccCEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCc
Confidence 57999999999999999999998 899999999876543
No 181
>PRK07045 putative monooxygenase; Reviewed
Probab=98.32 E-value=4.3e-06 Score=82.76 Aligned_cols=35 Identities=34% Similarity=0.420 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+||||||+|+++|..|++. |.+|+|+|+.+.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~--G~~v~v~E~~~~ 39 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR--GHSVTVVERAAR 39 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc--CCcEEEEeCCCc
Confidence 37999999999999999999998 999999998764
No 182
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.32 E-value=4.1e-06 Score=82.67 Aligned_cols=33 Identities=33% Similarity=0.594 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 38 (454)
||+|||||++|+++|..|++. | .+|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~--G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL--GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC--CCceEEEEeCCCc
Confidence 799999999999999999998 8 99999999754
No 183
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.31 E-value=5.1e-06 Score=83.30 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=71.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||||++|+.+|..|++. +.+|+++++.+.... +. + +.+......+.+.+ +++++. .++..++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~~~----~~----~-~~~~~~~~~~~l~~~gV~v~~~~~v~~i~ 206 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER--GKNVTLIHRSERILN----KL----F-DEEMNQIVEEELKKHEINLRLNEEVDSIE 206 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEECCcccCc----cc----c-CHHHHHHHHHHHHHcCCEEEeCCEEEEEe
Confidence 4699999999999999999998 889999998765310 00 1 11222333445555 999975 4888998
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+...+.+.+|+++.+|.+++|+|.+|..
T Consensus 207 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (427)
T TIGR03385 207 GEERVKVFTSGGVYQADMVILATGIKPNS 235 (427)
T ss_pred cCCCEEEEcCCCEEEeCEEEECCCccCCH
Confidence 76654455678899999999999998764
No 184
>PRK07588 hypothetical protein; Provisional
Probab=98.29 E-value=4.6e-06 Score=82.66 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence 4899999999999999999998 999999998754
No 185
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.29 E-value=5.3e-06 Score=81.96 Aligned_cols=33 Identities=30% Similarity=0.529 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~--G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS--GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC--CCEEEEEeCCCc
Confidence 799999999999999999998 999999999864
No 186
>KOG2820|consensus
Probab=98.28 E-value=4.3e-06 Score=77.06 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=44.2
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcccccC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVH 282 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~ 282 (454)
++.|+.++.+..+..++-.++++..+.|.+++|..+.++.+|+++|..-+. ++.
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k--lL~ 217 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK--LLP 217 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh--hcC
Confidence 458999999999988885443356788999999999999999999997665 444
No 187
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.27 E-value=7e-06 Score=80.76 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~--G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK--GIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC--CCeEEEecCC
Confidence 7999999999999999999998 9999999975
No 188
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.27 E-value=7.4e-06 Score=80.72 Aligned_cols=96 Identities=16% Similarity=0.276 Sum_probs=71.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . ..+........+.+.+ +++++. .++..++
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~--g~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 210 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA--GKAVTLVDNAASLLA--------S-LMPPEVSSRLQHRLTEMGVHLLLKSQLQGLE 210 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCeEEEEecCCcccc--------h-hCCHHHHHHHHHHHHhCCCEEEECCeEEEEE
Confidence 4799999999999999999998 889999999775421 0 0011222334455555 999875 4888887
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+.. .+.+.+|+++.+|.+|+|+|.+|+.
T Consensus 211 ~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 211 KTDSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred ccCCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 6543 4666788899999999999998864
No 189
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.27 E-value=8.9e-06 Score=80.84 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=76.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-.|..++++ |.+|+|+|+.+.+-. ..+.++.+...+.+.+ ++.++.+ +++.+.
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~L--G~~VTiie~~~~iLp----------~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~ 241 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAAL--GSKVTVVERGDRILP----------GEDPEISKELTKQLEKGGVKILLNTKVTAVE 241 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCCCC----------cCCHHHHHHHHHHHHhCCeEEEccceEEEEE
Confidence 4699999999999999999999 999999999886521 1123455555666666 8888765 777776
Q ss_pred Ccc--cEEEeccCc--EEEecEEEEecCCCCCCCCCC
Q psy1545 81 PRV--NCVITEKQN--RIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 81 ~~~--~~v~~~~g~--~i~~d~lviAtG~~p~~~~~~ 113 (454)
... ..+.++++. .+.+|++++|+|-+|+...+.
T Consensus 242 ~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~Lg 278 (454)
T COG1249 242 KKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLG 278 (454)
T ss_pred ecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCC
Confidence 544 356666665 789999999999999987653
No 190
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.26 E-value=6.6e-06 Score=81.39 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=33.8
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|.+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~--G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHC--CCCEEEEECCCC
Confidence 788999999999999999999998 999999999863
No 191
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.26 E-value=3.2e-06 Score=84.35 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||..|+++|++|++. |.+|+|+|+++.
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~~ 35 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHRY 35 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 16999999999999999999998 899999999874
No 192
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.25 E-value=2.8e-05 Score=77.72 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
||+|||||.+|+++|.+|++. +.+|+|+|+...
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence 899999999999999999998 899999999853
No 193
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.25 E-value=8.3e-06 Score=80.32 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=37.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
++++|||||++||+||++|++.+|..+++|+|+++..++...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 369999999999999999999988899999999988776443
No 194
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.24 E-value=7.3e-06 Score=81.26 Aligned_cols=96 Identities=8% Similarity=0.115 Sum_probs=69.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++.+.+.. ... +........+.+.+ +++++.+ ++..++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~~l~--------~~~-~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 213 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR--RCKVTVIELAATVMG--------RNA-PPPVQRYLLQRHQQAGVRILLNNAIEHVV 213 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCcchh--------hhc-CHHHHHHHHHHHHHCCCEEEeCCeeEEEE
Confidence 4699999999999999999998 889999998775421 000 11122233444555 9999854 788886
Q ss_pred Ccc-cEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRV-NCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~-~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+. ..+.+.+|+++.+|.+|+|+|.+|+.
T Consensus 214 ~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~ 243 (396)
T PRK09754 214 DGEKVELTLQSGETLQADVVIYGIGISAND 243 (396)
T ss_pred cCCEEEEEECCCCEEECCEEEECCCCChhh
Confidence 532 34667788899999999999998764
No 195
>PLN02661 Putative thiazole synthesis
Probab=98.24 E-value=8.2e-06 Score=77.62 Aligned_cols=38 Identities=26% Similarity=0.437 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||+|||||++|++||+.|++. ++.+|+|||+....+
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~G 129 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPG 129 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccc
Confidence 47999999999999999999974 588999999987654
No 196
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=9e-06 Score=82.20 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=70.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..+++. +.+|+++++.+.+.. . .+.++.....+.+.+ +++++.+ ++..++
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~ll~-----~-----~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~ 238 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL--GTKVTIVEMAPQLLP-----G-----EDEDIAHILREKLENDGVKIFTGAALKGLN 238 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCcCc-----c-----ccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 4799999999999999999998 889999998765411 1 112233344455666 9999865 788887
Q ss_pred CcccEEEec-cC--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNCVITE-KQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~v~~~-~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.+...+.+. ++ .++.+|.+++|+|.+|+...
T Consensus 239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred EcCCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 665544432 33 36999999999999987653
No 197
>PRK06996 hypothetical protein; Provisional
Probab=98.24 E-value=8.2e-06 Score=81.02 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCC--CCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHP--GESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~--g~~v~lie~~~ 37 (454)
.+||+||||||+|+++|..|++.+. |.+|+|+|+.+
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 5899999999999999999999731 36899999974
No 198
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.23 E-value=7.3e-06 Score=79.72 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence 37999999999999999999998 999999999854
No 199
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.22 E-value=8.5e-06 Score=86.22 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=37.9
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.++ |++++.++.|++++..++ .+.|.+++|..+.+|.||+|+|....
T Consensus 418 a~~-Gv~i~~~~~V~~i~~~~~---~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 418 AGQ-QLTIHFGHEVARLEREDD---GWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred ccc-CcEEEeCCEeeEEEEeCC---EEEEEECCCcEEECCEEEECCCCCcc
Confidence 355 999999999999986543 45677778877889999999998754
No 200
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.22 E-value=2e-06 Score=61.85 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=31.7
Q ss_pred EECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 7 IIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 7 IIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
|||||++|+++|..|++. +.+|+|+|+++.+++...
T Consensus 1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccCccee
Confidence 899999999999999998 889999999998876544
No 201
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.21 E-value=1.5e-06 Score=75.78 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+||||||+|++||+.|++. |++|+++|++..+++
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGG 54 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BT
T ss_pred cCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCc
Confidence 58999999999999999999999 999999999887664
No 202
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.20 E-value=1.9e-06 Score=74.70 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=34.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
.||+||||||+||+||++|++. |.+|+++|++-.+++
T Consensus 31 sDViIVGaGPsGLtAAyyLAk~--g~kV~i~E~~ls~GG 67 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAKA--GLKVAIFERKLSFGG 67 (262)
T ss_pred ccEEEECcCcchHHHHHHHHhC--CceEEEEEeecccCC
Confidence 5999999999999999999998 999999999987764
No 203
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.20 E-value=1.2e-05 Score=81.76 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||++|+.+|..|++. +.+|+|+++.+.+. +.+ +.++.....+.+.+ +++++.+ ++..++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~--g~~Vtli~~~~~il-----~~~-----~~~~~~~l~~~l~~~gI~i~~~~~v~~i~ 248 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF--GVEVTVVEAADRIL-----PTE-----DAELSKEVARLLKKLGVRVVTGAKVLGLT 248 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEEecCccC-----CcC-----CHHHHHHHHHHHHhcCCEEEeCcEEEEEE
Confidence 4799999999999999999998 89999999887531 111 12233334455666 9999865 788886
Q ss_pred C--ccc-E-EEeccC--cEEEecEEEEecCCCCCCCCC
Q psy1545 81 P--RVN-C-VITEKQ--NRIKYKTLCICTGASPRKIWY 112 (454)
Q Consensus 81 ~--~~~-~-v~~~~g--~~i~~d~lviAtG~~p~~~~~ 112 (454)
. +.. . +.+.+| +++.||.+++|+|.+|....+
T Consensus 249 ~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l 286 (472)
T PRK05976 249 LKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGI 286 (472)
T ss_pred EecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCC
Confidence 3 232 2 223355 369999999999999876543
No 204
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.20 E-value=1.1e-05 Score=80.98 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHhh----cCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAF----LHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~----~~~g~~v~lie~~ 36 (454)
+||+|||||++|+++|..|++ . |.+|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~--G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK--DLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC--CCeEEEEeCC
Confidence 699999999999999999998 5 8999999994
No 205
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.18 E-value=1.3e-05 Score=83.07 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||+|||||++|+++|..|++. |.+|+|||+.+.
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~--G~~v~viE~~~~ 57 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQ--GVPVVLLDDDDT 57 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCC
Confidence 47999999999999999999998 999999999863
No 206
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.18 E-value=1.2e-05 Score=81.42 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+. +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l-----~~~-----~~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 240 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL--GAEVTIVEALPRIL-----PGE-----DKEISKLAERALKKRGIKIKTGAKAKKVE 240 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCCcC-----CcC-----CHHHHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence 4699999999999999999998 89999999987541 111 11233334445555 9999865 888887
Q ss_pred Cccc--EEEeccC---cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQ---NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g---~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+.++ +++.+|.+|+|+|.+|....
T Consensus 241 ~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 241 QTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred EeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 6543 3444445 67999999999999987654
No 207
>PRK06126 hypothetical protein; Provisional
Probab=98.18 E-value=1.3e-05 Score=82.96 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~--G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRR--GVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence 47999999999999999999998 999999998753
No 208
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.17 E-value=1.5e-05 Score=80.19 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++.+.+.. .+ +.+......+.+.+ +++++. .++..++
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtli~~~~~l~~-----~~-----d~~~~~~l~~~l~~~gI~i~~~~~v~~i~ 216 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER--GLHPTLIHRSDKINK-----LM-----DADMNQPILDELDKREIPYRLNEEIDAIN 216 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecccccch-----hc-----CHHHHHHHHHHHHhcCCEEEECCeEEEEe
Confidence 3699999999999999999998 889999998765321 11 11233344455666 999975 4888887
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
. ..+.+.+|+.+.+|.+++|+|.+|+.
T Consensus 217 ~--~~v~~~~g~~~~~D~vl~a~G~~pn~ 243 (438)
T PRK13512 217 G--NEVTFKSGKVEHYDMIIEGVGTHPNS 243 (438)
T ss_pred C--CEEEECCCCEEEeCEEEECcCCCcCh
Confidence 5 35666678889999999999998865
No 209
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.16 E-value=1.5e-05 Score=78.98 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=33.7
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|++||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~--G~~v~v~E~~~~ 36 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLA--GIDSVVLERRSR 36 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 788999999999999999999998 999999999863
No 210
>PRK07846 mycothione reductase; Reviewed
Probab=98.16 E-value=1.8e-05 Score=79.75 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=69.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. |.+|+|+++.+.+. +.+ +.+.... ...+.+ +++++. .+++.++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~--G~~Vtli~~~~~ll-----~~~-----d~~~~~~-l~~l~~~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL--GVRVTVVNRSGRLL-----RHL-----DDDISER-FTELASKRWDVRLGRNVVGVS 233 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCccc-----ccc-----CHHHHHH-HHHHHhcCeEEEeCCEEEEEE
Confidence 4799999999999999999998 89999999987542 111 1112222 222233 888874 4888887
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.... .+.+.+++.+.+|.+++|+|.+|....
T Consensus 234 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 234 QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred EcCCEEEEEECCCcEeecCEEEEEECCccCccc
Confidence 5543 455667788999999999999987654
No 211
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.16 E-value=9.5e-06 Score=81.82 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=67.4
Q ss_pred CeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
++++|||||+.|+.+|..|+ +.+|+++++++.+.- ....+..........
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~--~~~~~~~~~~~~~~~------------------------ 54 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF--GACGLPYFVGGFFDD------------------------ 54 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee--ecCCCceEeccccCC------------------------
Confidence 47999999999999999885 458999998875420 000000000000000
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe-cCCcEEe--cCEEEEeeccCcCcc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNGHTHA--CDIVVSAIGVVPNSN 278 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g~~~~--~D~vi~a~G~~p~~~ 278 (454)
..++. ....+.+++.||+++.++.|.++..+++ .+.+.. .++.+++ +|.+|+|||.+|..+
T Consensus 55 -~~~~~--~~~~~~~~~~gv~~~~~~~V~~id~~~~---~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 55 -PNTMI--ARTPEEFIKSGIDVKTEHEVVKVDAKNK---TITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred -HHHhh--cCCHHHHHHCCCeEEecCEEEEEECCCC---EEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 00000 0011223457999999999999987653 333332 2355666 999999999998764
No 212
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.15 E-value=1.8e-05 Score=80.16 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=72.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..+++. +.+|+|+++.+.+.. . .+.+......+.+.+ +++++.+ .++.++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l~-----~-----~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~ 243 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL--GVKVTLINTRDRLLS-----F-----LDDEISDALSYHLRDSGVTIRHNEEVEKVE 243 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCcCC-----c-----CCHHHHHHHHHHHHHcCCEEEECCEEEEEE
Confidence 4799999999999999999998 899999999875421 0 112233444555656 9999754 888886
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.+|+++.+|.+++|+|.+|+...
T Consensus 244 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~ 276 (461)
T PRK05249 244 GGDDGVIVHLKSGKKIKADCLLYANGRTGNTDG 276 (461)
T ss_pred EeCCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence 433 2455567788999999999999987653
No 213
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.15 E-value=1.6e-05 Score=82.15 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~--G~~v~v~Er~~~ 44 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQY--GVRVLVLERWPT 44 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence 47999999999999999999998 999999999853
No 214
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.15 E-value=2.4e-06 Score=85.42 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
||||||||+||++||..+++. |.+|+|||+.+.+++.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~--G~~VlLiE~~~~lGG~ 37 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA--GAKVLLIEKGGFLGGM 37 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT--TS-EEEE-SSSSSTGG
T ss_pred CEEEECccHHHHHHHHHHHHC--CCEEEEEECCccCCCc
Confidence 899999999999999999998 9999999999887653
No 215
>PRK11445 putative oxidoreductase; Provisional
Probab=98.15 E-value=2e-05 Score=76.88 Aligned_cols=33 Identities=24% Similarity=0.149 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+||||||||+++|..|++. .+|+++|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK---MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc---CCEEEEECCCc
Confidence 8999999999999999999883 79999998763
No 216
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.15 E-value=2.3e-06 Score=84.18 Aligned_cols=138 Identities=18% Similarity=0.266 Sum_probs=67.3
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc------------CCc----------chhhhHHHhhccCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL------------DPG----------AAEFFQDSINKTNTAK 192 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~------------d~~----------~~~~~~~~l~~~~~~~ 192 (454)
+|+|||||++|+-+|..++ |.+|.++++++++..+.+ +.+ -...+...+......+
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999886 999999999876542210 000 1112222222211111
Q ss_pred hhhhhhhcccccCCCCCCCCCCccccc---c-ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEE
Q psy1545 193 PETIFKRMRYNTGGEKGPSLGPDWHTQ---V-NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---~-~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi 268 (454)
......+..+.+..+-...+-|.-.+. + .+...+++.||+++++++|.+++..++ ..+.|+++++.++.+|.||
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~--~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED--GVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT--EEEEEEETTTEEEEESEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC--ceeEeeccCcccccCCEEE
Confidence 111222222222111111111111111 1 134455778999999999999987653 3577888777899999999
Q ss_pred EeeccCcC
Q psy1545 269 SAIGVVPN 276 (454)
Q Consensus 269 ~a~G~~p~ 276 (454)
+|+|-...
T Consensus 160 LAtGG~S~ 167 (409)
T PF03486_consen 160 LATGGKSY 167 (409)
T ss_dssp E----SSS
T ss_pred EecCCCCc
Confidence 99997653
No 217
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.14 E-value=1.8e-05 Score=80.63 Aligned_cols=103 Identities=21% Similarity=0.263 Sum_probs=65.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc-ccccccc---------------ccccc--------------c
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV-KAVTKTV---------------PVTKL--------------L 52 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~-~~~~~~~---------------~~~~~--------------~ 52 (454)
|||+|||||+||+.+|..+++. +.+|+|+++.... +.+...+ .+... +
T Consensus 1 yDViVIGaG~AGl~aA~ala~~--G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~l 78 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM--GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVL 78 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC--CCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheec
Confidence 6999999999999999999998 8999999986421 1111000 00000 0
Q ss_pred -----ccc-----chh-----hhHHHHHhc--CcEEEcceEEEEeCc--c--cEEEeccCcEEEecEEEEecCCCC
Q psy1545 53 -----SDI-----TVE-----ETDANKFEG--LCTVIVDTVAAIDPR--V--NCVITEKQNRIKYKTLCICTGASP 107 (454)
Q Consensus 53 -----~~~-----~~~-----~~~~~~~~~--~i~~~~~~v~~i~~~--~--~~v~~~~g~~i~~d~lviAtG~~p 107 (454)
+.. .+. ....+.+.+ ++.++.+.++.+..+ . ..|.+.+|..+.++.+|+|||...
T Consensus 79 n~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 79 NSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred ccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 000 000 111122333 788888888777432 2 246677788999999999999864
No 218
>PRK06116 glutathione reductase; Validated
Probab=98.13 E-value=2e-05 Score=79.55 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=72.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+. +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~l-----~~~-----~~~~~~~l~~~L~~~GV~i~~~~~V~~i~ 235 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL--GSETHLFVRGDAPL-----RGF-----DPDIRETLVEEMEKKGIRLHTNAVPKAVE 235 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCc-----ccc-----CHHHHHHHHHHHHHCCcEEECCCEEEEEE
Confidence 4799999999999999999998 89999999876431 011 11233344455666 9999855 888887
Q ss_pred Ccc---cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV---NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~---~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+. ..+.+.+|+.+.+|.+|+|+|.+|+...
T Consensus 236 ~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 236 KNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred EcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 532 3456667888999999999999987754
No 219
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.13 E-value=2e-05 Score=79.40 Aligned_cols=96 Identities=21% Similarity=0.219 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..+++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~--G~~Vtli~~~~~~l~-----~~-----d~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 234 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL--GVQVTLIYRGELILR-----GF-----DDDMRALLARNMEGRGIRIHPQTSLTSIT 234 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEEeCCCCCc-----cc-----CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4699999999999999999988 889999998765310 11 12233334455656 9999855 788886
Q ss_pred Cc--ccEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PR--VNCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~--~~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.. ...+.+.+++.+.+|.+|+|+|.+|...
T Consensus 235 ~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 235 KTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred EcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 43 3345566778899999999999988764
No 220
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.10 E-value=1.6e-05 Score=78.70 Aligned_cols=32 Identities=34% Similarity=0.436 Sum_probs=29.4
Q ss_pred EEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 6 vIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+|||||+||++||..|++. +.+|+|+|+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~--G~~V~llEk~~~~ 32 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE--GLSVLLLEKNKKI 32 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc--CCcEEEEecCccc
Confidence 6999999999999999998 8999999998754
No 221
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.09 E-value=3.2e-05 Score=68.97 Aligned_cols=133 Identities=19% Similarity=0.218 Sum_probs=63.6
Q ss_pred EEEcCchhHHHHHHHhc--CCc-EEEEEeCCCccccccCC-cchhhhHHHhh--ccCCCChhh-hhhhc-ccccCCCCCC
Q psy1545 139 VVIGNGGIATELVHELS--NVD-IVWVVKDKHISATFLDP-GAAEFFQDSIN--KTNTAKPET-IFKRM-RYNTGGEKGP 210 (454)
Q Consensus 139 vVvG~G~~g~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~-~~~~~~~~~l~--~~~~~~~~~-~~~~~-~~~~~~~~~~ 210 (454)
+|||+|+.|+-+|..|. |.+ ++|+++.+.+...+..- ........... ....++... ..... .... ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRW--PHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHH--SBSS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCC--Cccc
Confidence 69999999999999886 888 99999987654432110 00000000000 000000000 00000 0000 0000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc--CcCcc
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV--VPNSN 278 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~--~p~~~ 278 (454)
.-..++.+. +....++.+++++++++|+++..+++ .+.|++++++++.||.||+|+|. .|..+
T Consensus 79 ~~~~~v~~y--l~~~~~~~~l~i~~~~~V~~v~~~~~---~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 79 PSGEEVLDY--LQEYAERFGLEIRFNTRVESVRRDGD---GWTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp EBHHHHHHH--HHHHHHHTTGGEETS--EEEEEEETT---TEEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred CCHHHHHHH--HHHHHhhcCcccccCCEEEEEEEecc---EEEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 111112111 23333667888999999999998764 48899999988999999999997 55443
No 222
>PRK14694 putative mercuric reductase; Provisional
Probab=98.09 E-value=3e-05 Score=78.68 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=69.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++...+. . .+.+......+.+.+ +++++.+ .+..++
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~--g~~Vtlv~~~~~l~------~-----~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~ 245 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL--GSRVTVLARSRVLS------Q-----EDPAVGEAIEAAFRREGIEVLKQTQASEVD 245 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEECCCCCC------C-----CCHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 4699999999999999999998 88999998754321 1 112233444555666 9999865 888887
Q ss_pred CcccE--EEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNC--VITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~--v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+... +.+ ++.++.+|.+++|+|.+|+...
T Consensus 246 ~~~~~~~v~~-~~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 246 YNGREFILET-NAGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred EcCCEEEEEE-CCCEEEeCEEEEccCCCCCcCC
Confidence 65543 333 3447999999999999987653
No 223
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.08 E-value=0.0001 Score=71.10 Aligned_cols=53 Identities=28% Similarity=0.211 Sum_probs=44.1
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.+.+++.|+++++++.|..++..++ ....+.+++|.++++|.||+|+|+....
T Consensus 180 ~~~l~~~G~ei~f~t~VeDi~~~~~--~~~~v~~~~g~~i~~~~vvlA~Grsg~d 232 (486)
T COG2509 180 REYLESLGGEIRFNTEVEDIEIEDN--EVLGVKLTKGEEIEADYVVLAPGRSGRD 232 (486)
T ss_pred HHHHHhcCcEEEeeeEEEEEEecCC--ceEEEEccCCcEEecCEEEEccCcchHH
Confidence 3444669999999999999987763 3567889999999999999999998754
No 224
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.08 E-value=2.6e-05 Score=77.51 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|..+|+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~~~~V~IvGgGiaGl~~A~~L~~~--G~~V~i~E~~~~ 36 (400)
T PRK06475 1 TRGSPLIAGAGVAGLSAALELAAR--GWAVTIIEKAQE 36 (400)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence 557899999999999999999997 999999998754
No 225
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.07 E-value=3.1e-05 Score=78.46 Aligned_cols=97 Identities=21% Similarity=0.295 Sum_probs=69.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----d~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 234 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL--GSEVTILQRSDRLLP-----RE-----EPEISAAVEEALAEEGIEVVTSAQVKAVS 234 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCcCCC-----cc-----CHHHHHHHHHHHHHcCCEEEcCcEEEEEE
Confidence 4799999999999999999998 889999998865421 11 11223333445555 9999865 688887
Q ss_pred Cccc--EEEec---cCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITE---KQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~---~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.++. .+.+. +++++.+|.+++|+|.+|....
T Consensus 235 ~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~ 270 (463)
T TIGR02053 235 VRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDG 270 (463)
T ss_pred EcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCC
Confidence 5432 33432 2357999999999999988764
No 226
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.07 E-value=1.6e-05 Score=79.22 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~ 39 (454)
++||+|||||..|+++|++|++.. | .+|+|+|++...
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~~~~ 67 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKGWLG 67 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEccccc
Confidence 379999999999999999999841 5 489999998654
No 227
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.06 E-value=2.4e-05 Score=58.90 Aligned_cols=82 Identities=20% Similarity=0.419 Sum_probs=63.4
Q ss_pred eeeeecCeEEEEeecccCCcCCCCceEEEeecC-CccEEEEEEECCeEEEEEEEcCCchHHHHHHHHhcCCCcchhhhhc
Q psy1545 364 HMTKFFGYKVILLGLFNGQTLENDYEILLRVTR-GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDL 442 (454)
Q Consensus 364 ~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~i~G~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~ 442 (454)
+|+.++|.++.++|...... +++++.++ +..|+-+++++|+++|+..+|.......++.+|..+..++. +.|
T Consensus 2 FWSdQ~~~~iq~~G~~~~~~-----~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~~~~~~~~rrli~~~~~~~~--~~l 74 (85)
T PF14759_consen 2 FWSDQYGVRIQIAGLPGGAD-----EVVVRGDPESGKFVAFYLRDGRLVAAVSVNRPRDLRAARRLIAAGARVDP--ARL 74 (85)
T ss_dssp EEEEETTEEEEEEE-STTSS-----EEEEEEETTTTEEEEEEEETTEEEEEEEES-HHHHHHHHHHHHTT-B--H--HHH
T ss_pred eecccCCCeEEEEECCCCCC-----EEEEEccCCCCcEEEEEEcCCEEEEEEecCCHHHHHHHHHHHHCCCCcCH--HHh
Confidence 47889999999999965432 34555454 36788888899999999999999899999999999999997 899
Q ss_pred cCCCCCCCCC
Q psy1545 443 LNPNIDIDDY 452 (454)
Q Consensus 443 ~~~~~~~~~~ 452 (454)
.+|+++|++.
T Consensus 75 ~d~~~~L~~l 84 (85)
T PF14759_consen 75 ADPSVDLRSL 84 (85)
T ss_dssp HSTTSHHHHH
T ss_pred cCCCCChHHh
Confidence 9999998753
No 228
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.05 E-value=3.3e-05 Score=77.83 Aligned_cols=97 Identities=21% Similarity=0.146 Sum_probs=71.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..|++. +.+|+|+++.+.+. +.+ +.+......+.+.+ +++++.+ .+..+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~il-----~~~-----d~~~~~~~~~~l~~~gI~i~~~~~v~~i~ 234 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL--GSETHLVIRHERVL-----RSF-----DSMISETITEEYEKEGINVHKLSKPVKVE 234 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCCC-----ccc-----CHHHHHHHHHHHHHcCCEEEcCCEEEEEE
Confidence 4799999999999999999998 89999999876431 111 11233344455656 9999865 788886
Q ss_pred Ccc---cEEEeccC-cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV---NCVITEKQ-NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~---~~v~~~~g-~~i~~d~lviAtG~~p~~~~ 111 (454)
.+. ..+.+.++ +.+.+|.+++|+|.+|+...
T Consensus 235 ~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 235 KTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred EeCCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 432 24555566 57999999999999988753
No 229
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.05 E-value=3e-05 Score=78.79 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=70.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . .+.++.....+.+.+ +++++.+ ++..++
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l~-----~-----~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~ 251 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL--GAEVTILEALPAFLA-----A-----ADEQVAKEAAKAFTKQGLDIHLGVKIGEIK 251 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCCccCC-----c-----CCHHHHHHHHHHHHHcCcEEEeCcEEEEEE
Confidence 4799999999999999999998 899999999775421 0 112233344455656 9999855 888887
Q ss_pred Cccc--EEEecc--C--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEK--Q--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~--g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.+.. .+.+.+ | ..+.+|.+++|+|.+|....
T Consensus 252 ~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 252 TGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 5543 333333 3 47999999999999988753
No 230
>PRK06370 mercuric reductase; Validated
Probab=98.05 E-value=3.4e-05 Score=78.15 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=69.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.+.. . .+.+......+.+.+ +++++.+ ++..++
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~--G~~Vtli~~~~~~l~-----~-----~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 239 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF--GSEVTVIERGPRLLP-----R-----EDEDVAAAVREILEREGIDVRLNAECIRVE 239 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCCCCc-----c-----cCHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 889999999875421 0 111223334445555 9999854 888887
Q ss_pred Cccc--EEEec---cCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITE---KQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~---~g~~i~~d~lviAtG~~p~~~ 110 (454)
..+. .+.+. ++..+.+|.+|+|+|.+|+..
T Consensus 240 ~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 240 RDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred EcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 6432 33332 235799999999999998865
No 231
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.05 E-value=3.7e-05 Score=76.79 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~ 39 (454)
++|+|||||++|+++|..|++. | .+|+|+|+.+..
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCcC
Confidence 3799999999999999999997 6 599999998653
No 232
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.05 E-value=0.00013 Score=73.40 Aligned_cols=132 Identities=22% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc-CCcch--------------hhhHHHhhccCCCChhhhh
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL-DPGAA--------------EFFQDSINKTNTAKPETIF 197 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~-d~~~~--------------~~~~~~l~~~~~~~~~~~~ 197 (454)
.++|+|||+|++|+-+|..|. |.+|+++++++.+-..+. ++... ..+.+.+.. +.+.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~t---n~p~--- 83 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRT---NLPR--- 83 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhc---cCCH---
Confidence 689999999999999999886 999999999886654331 11110 000111110 0000
Q ss_pred hhcccccCCCCCCC----------CC--CccccccccccCccCCceE--EEeCceEEEEEcCCCCccceEEEecCC----
Q psy1545 198 KRMRYNTGGEKGPS----------LG--PDWHTQVNLHGSSRDTKIT--IEYSCEVERIVDSEDDTCNAYVKLTNG---- 259 (454)
Q Consensus 198 ~~~~~~~~~~~~~~----------l~--~~~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~~v~~~~g---- 259 (454)
..+.+.- .+..+. +. .++.+. +.+..+..|+. ++++++|++++..++ .+.|...++
T Consensus 84 ~~m~f~d-fp~~~~~~~~~~~~~~fp~~~ev~~Y--L~~~a~~fgl~~~I~~~t~V~~V~~~~~---~w~V~~~~~~~~~ 157 (461)
T PLN02172 84 ECMGYRD-FPFVPRFDDESRDSRRYPSHREVLAY--LQDFAREFKIEEMVRFETEVVRVEPVDG---KWRVQSKNSGGFS 157 (461)
T ss_pred hhccCCC-CCCCcccccccCcCCCCCCHHHHHHH--HHHHHHHcCCcceEEecCEEEEEeecCC---eEEEEEEcCCCce
Confidence 0011100 011110 00 111111 22333556777 899999999987642 566766533
Q ss_pred cEEecCEEEEeec--cCcCcc
Q psy1545 260 HTHACDIVVSAIG--VVPNSN 278 (454)
Q Consensus 260 ~~~~~D~vi~a~G--~~p~~~ 278 (454)
.+..+|.||+|+| ..|+.+
T Consensus 158 ~~~~~d~VIvAtG~~~~P~~P 178 (461)
T PLN02172 158 KDEIFDAVVVCNGHYTEPNVA 178 (461)
T ss_pred EEEEcCEEEEeccCCCCCcCC
Confidence 2467999999999 466654
No 233
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.04 E-value=4.3e-05 Score=77.43 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=71.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||..|+.+|..|++. +.+|+++++.+.+.. . . +.+......+.+.+ +++++.+ ++..++
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~--g~~Vtli~~~~~~l~-----~----~-d~~~~~~l~~~L~~~gV~i~~~~~v~~v~ 245 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL--GVKVTLVSSRDRVLP-----G----E-DADAAEVLEEVFARRGMTVLKRSRAESVE 245 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCcCCC-----C----C-CHHHHHHHHHHHHHCCcEEEcCCEEEEEE
Confidence 3699999999999999999998 899999998764311 0 0 11222333455555 9999855 788885
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.+|+++.+|.+++|+|.+|....
T Consensus 246 ~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 246 RTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred EeCCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence 432 3455567889999999999999988754
No 234
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.04 E-value=4.4e-05 Score=76.98 Aligned_cols=97 Identities=15% Similarity=0.243 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhcCcEEEc-ceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIV-DTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~~i~~ 81 (454)
.+++|||||+.|+.+|..|++. +.+|++|++.+.+.. .+ +.+......+.+..+++++. .++..++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~--G~~Vtli~~~~~ll~-----~~-----d~~~~~~l~~~~~~gI~i~~~~~V~~i~~ 237 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL--GTRVTIVNRSTKLLR-----HL-----DEDISDRFTEIAKKKWDIRLGRNVTAVEQ 237 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccCcccc-----cc-----CHHHHHHHHHHHhcCCEEEeCCEEEEEEE
Confidence 4799999999999999999998 889999998765311 11 11222222222223888874 48888875
Q ss_pred ccc--EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 82 RVN--CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 82 ~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
+.. .+.+.+|+++.+|.+++|+|.+|+...
T Consensus 238 ~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 238 DGDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred cCCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 433 455556778999999999999987643
No 235
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.03 E-value=3.9e-05 Score=77.85 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=70.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++.+... +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~--G~~Vtlv~~~~~~l-----~~~-----d~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 240 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY--GVDVTIVEFLDRAL-----PNE-----DAEVSKEIAKQYKKLGVKILTGTKVESID 240 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCCcC-----Ccc-----CHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 4799999999999999999998 88999999876431 111 12233344555666 9999855 888887
Q ss_pred CcccE--EEec--cC--cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNC--VITE--KQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~--v~~~--~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.+... +.+. +| +++.+|.+++|+|.+|....
T Consensus 241 ~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 241 DNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG 277 (466)
T ss_pred EeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence 55432 3333 45 37999999999999987653
No 236
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.03 E-value=2.8e-05 Score=78.19 Aligned_cols=35 Identities=34% Similarity=0.522 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 38 (454)
||||||||+||..+|..|++..+. .+|+|||++..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 799999999999999999998554 89999999843
No 237
>PLN02985 squalene monooxygenase
Probab=98.02 E-value=4.3e-05 Score=78.03 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~--G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKD--GRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHc--CCeEEEEECcC
Confidence 47999999999999999999998 99999999874
No 238
>PLN02507 glutathione reductase
Probab=98.02 E-value=4.8e-05 Score=77.56 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=71.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..+++. +.+|+|+++.+..- +. + +.+......+.+.+ +++++.+ ++..++
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~--G~~Vtli~~~~~~l-----~~----~-d~~~~~~l~~~l~~~GI~i~~~~~V~~i~ 271 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM--GATVDLFFRKELPL-----RG----F-DDEMRAVVARNLEGRGINLHPRTNLTQLT 271 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEEecCCcC-----cc----c-CHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 4799999999999999999998 89999999876431 00 1 12233334455666 9999865 788886
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.+|+++.+|.+++|+|.+|....
T Consensus 272 ~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 272 KTEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred EeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 432 3455556778999999999999987654
No 239
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.01 E-value=3.4e-05 Score=79.09 Aligned_cols=112 Identities=15% Similarity=0.187 Sum_probs=71.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
..+++|||||+.|+.+|..++ |.+|++++.. +-....+... +...+ ......
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~---~~~~~---------------------~~~~~~ 265 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVG---IENLI---------------------SVPYTT 265 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcC---ccccc---------------------ccCCCC
Confidence 578999999999999999986 9999998632 1110000000 00000 000001
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++++... +.+.+++.|++++.+++|.++...++ ...+.+++|.++.+|.+++|+|.+|..
T Consensus 266 ~~~l~~~--l~~~l~~~gv~i~~~~~V~~I~~~~~---~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 266 GSQLAAN--LEEHIKQYPIDLMENQRAKKIETEDG---LIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred HHHHHHH--HHHHHHHhCCeEEcCCEEEEEEecCC---eEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 1111111 22334557999999999999976542 466777888889999999999998754
No 240
>PRK06847 hypothetical protein; Provisional
Probab=98.00 E-value=3.8e-05 Score=75.61 Aligned_cols=136 Identities=19% Similarity=0.215 Sum_probs=78.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCcchhhhH-----HHhhccCCCChhhhhhhcccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPGAAEFFQ-----DSINKTNTAKPETIFKRMRYN 203 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~ 203 (454)
.++|+|||||+.|+-+|..|. |.+|+++++.+.+.... +.+...+.+. +.+.+... . .....+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~-~----~~~~~~~ 78 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGF-G----FDGVDLF 78 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCC-C----ccceEEE
Confidence 678999999999999999996 99999999876543210 1111111111 01110000 0 0000011
Q ss_pred cC-CC---------CC-CCCCC--cccc-c--cccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEE
Q psy1545 204 TG-GE---------KG-PSLGP--DWHT-Q--VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIV 267 (454)
Q Consensus 204 ~~-~~---------~~-~~l~~--~~~~-~--~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~v 267 (454)
.. .. .. ..... .+.+ . ..+.+.+++.|++++.++.+++++..++ .+.+.+.+|+++.+|.|
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~---~~~v~~~~g~~~~ad~v 155 (375)
T PRK06847 79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD---GVTVTFSDGTTGRYDLV 155 (375)
T ss_pred CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC---EEEEEEcCCCEEEcCEE
Confidence 00 00 00 00000 0000 0 0123334567999999999999987553 46788889989999999
Q ss_pred EEeeccCcCcc
Q psy1545 268 VSAIGVVPNSN 278 (454)
Q Consensus 268 i~a~G~~p~~~ 278 (454)
|.|.|..+...
T Consensus 156 I~AdG~~s~~r 166 (375)
T PRK06847 156 VGADGLYSKVR 166 (375)
T ss_pred EECcCCCcchh
Confidence 99999987653
No 241
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=1.1e-05 Score=79.31 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=66.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc-ccccccccccc-------------------------------
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI-VKAVTKTVPVT------------------------------- 49 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~-~~~~~~~~~~~------------------------------- 49 (454)
.|||+|||||.||+.||...++. |.++.|+.-+.. .+.+...|..+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm--G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~ 81 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM--GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRM 81 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc--CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhh
Confidence 38999999999999999999998 888888876532 11111111100
Q ss_pred ----cccc----c-----cchhhhHHHHHhc--CcEEEcceEEEEeCcc----cEEEeccCcEEEecEEEEecCCC
Q psy1545 50 ----KLLS----D-----ITVEETDANKFEG--LCTVIVDTVAAIDPRV----NCVITEKQNRIKYKTLCICTGAS 106 (454)
Q Consensus 50 ----~~~~----~-----~~~~~~~~~~~~~--~i~~~~~~v~~i~~~~----~~v~~~~g~~i~~d~lviAtG~~ 106 (454)
+... . ..+.....+.+.. ++.++++.|..+..++ .-|.+.+|..+.++.|||+||.-
T Consensus 82 LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 82 LNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred ccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 0000 0 0000111122223 8999999888776532 24567889999999999999963
No 242
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.99 E-value=4.1e-05 Score=82.35 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+-+|..|++. |.+|+|+++.+.+. +..+ +........+.+.+ +|+++.+ .++.+.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~--G~~Vtvv~~~~~ll--------~~~l-d~~~~~~l~~~l~~~GV~v~~~~~v~~i~ 209 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL--GMDVSVIHHAPGLM--------AKQL-DQTAGRLLQRELEQKGLTFLLEKDTVEIV 209 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCeEEEEccCCchh--------hhhc-CHHHHHHHHHHHHHcCCEEEeCCceEEEE
Confidence 4699999999999999999998 89999999876431 0111 11222333445555 9999865 677776
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.+.. .|.+.+|+.+.+|.+|+|+|.+|+..
T Consensus 210 ~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 210 GATKADRIRFKDGSSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred cCCceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence 5432 46677889999999999999988753
No 243
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.99 E-value=4.6e-05 Score=76.27 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=68.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
.++++|||||+.|+.+|..|. +.+|+++++++.+.- .+.+...+......
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~---~~~l~~~~~g~~~~------------------------- 61 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF---TPLLPQTTTGTLEF------------------------- 61 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch---hhhHHHhcccCCCh-------------------------
Confidence 579999999999999999886 679999998775431 22111111000000
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe--------cCCcEEecCEEEEeeccCcCcc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--------TNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--------~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++. ..+.+.++..+++++.+ +|++|+.+++ .+.+.. ++|.++++|.+|+|+|.+|+..
T Consensus 62 -~~~~--~~~~~~~~~~~~~~i~~-~V~~Id~~~~---~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 62 -RSIC--EPVRPALAKLPNRYLRA-VVYDVDFEEK---RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred -HHhH--HHHHHHhccCCeEEEEE-EEEEEEcCCC---EEEEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 0000 00112234467888765 8999987653 233311 4567899999999999998754
No 244
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.97 E-value=0.00013 Score=67.44 Aligned_cols=196 Identities=13% Similarity=0.094 Sum_probs=100.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc------cCCc-chhhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF------LDPG-AAEFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~------~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
...++|||+|+.|+-+|..++ |.+|.++++.+.+-... ++.. +.....+.+. +..+.+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~------------~~gv~~~ 92 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILD------------EFGIRYK 92 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHH------------HCCCCce
Confidence 457999999999999999886 89999999876543211 0100 0011111111 1111111
Q ss_pred CCCCC--CCC-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-----------CCcEEecCEEEEee
Q psy1545 206 GEKGP--SLG-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-----------NGHTHACDIVVSAI 271 (454)
Q Consensus 206 ~~~~~--~l~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-----------~g~~~~~D~vi~a~ 271 (454)
..... .+. .++... +.+..++.|++++.++.+..+..+++ +....+... +..++.++.||.|+
T Consensus 93 ~~~~g~~~vd~~~l~~~--L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~AT 169 (257)
T PRK04176 93 EVEDGLYVADSVEAAAK--LAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDAT 169 (257)
T ss_pred eecCcceeccHHHHHHH--HHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcCEEEEEe
Confidence 10000 000 011111 23334668999999999999875432 123333322 22579999999999
Q ss_pred ccCcCccccc-CC---CCceecCCCceEe--------ccccccccCceeecCcccccCCccccchhhccChHHHHHHHHH
Q psy1545 272 GVVPNSNIQV-HG---TPFELAPDCGIGV--------NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTY 339 (454)
Q Consensus 272 G~~p~~~~~~-~~---~~l~~~~~g~i~v--------d~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~ 339 (454)
|........+ +. .+..+...+.... +..- --+|++|++|=.+..-. ..+ +.-|..-.=...|+.
T Consensus 170 G~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~t~-~~~~g~~~~gm~~~~~~-~~~--rmg~~fg~m~~sg~~ 245 (257)
T PRK04176 170 GHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVENTG-EVYPGLYVAGMAANAVH-GLP--RMGPIFGGMLLSGKK 245 (257)
T ss_pred CCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHhcCC-eEcCCEEEeehhhhhhc-CCC--ccCchhHhHHHhHHH
Confidence 9765432011 10 1111111111222 1111 12699999998775421 111 111111222456888
Q ss_pred HHhhhcCCCC
Q psy1545 340 AAKCMVGAVK 349 (454)
Q Consensus 340 aa~~i~~~~~ 349 (454)
||+-++.+++
T Consensus 246 ~a~~~~~~~~ 255 (257)
T PRK04176 246 VAELILEKLK 255 (257)
T ss_pred HHHHHHHHhh
Confidence 8888876543
No 245
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.97 E-value=4.6e-05 Score=78.23 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=71.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
...++|||||+.|+.+|..++ |.+|+++... +-....+... +. .+ ..+...-
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~---~~-~~--------------------~~~~~~~ 264 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMG---IE-NF--------------------ISVPETE 264 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCc---cc-cc--------------------CCCCCCC
Confidence 358999999999999999986 9999999653 1111000000 00 00 0000000
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++++... +.+.+++.|++++.++.+.++...++ .+.+.+++|.++.+|.||+|+|.+|..
T Consensus 265 ~~~l~~~--l~~~~~~~gv~i~~~~~V~~I~~~~~---~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 265 GPKLAAA--LEEHVKEYDVDIMNLQRASKLEPAAG---LIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred HHHHHHH--HHHHHHHCCCEEEcCCEEEEEEecCC---eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 1111111 23334557999999999999987642 467778888889999999999998754
No 246
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.97 E-value=2.3e-05 Score=70.32 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+|||+|+||++||..|++. |.+|+|+||+.-
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a--G~~vtV~eKg~G 35 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA--GREVTVFEKGRG 35 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc--CcEEEEEEcCCC
Confidence 4699999999999999999998 999999999853
No 247
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.96 E-value=4.9e-05 Score=75.71 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=72.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||+|+.|+.+|..|+++ |++|+++|+.+........ ........+.+.. +++++.+ .+..++
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~--G~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i~ 205 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR--GKKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGVE 205 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc--CCeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEEE
Confidence 4799999999999999999999 8999999999876432211 1233334445555 8998654 888888
Q ss_pred CcccE-----EEeccCcEEEecEEEEecCCCCC
Q psy1545 81 PRVNC-----VITEKQNRIKYKTLCICTGASPR 108 (454)
Q Consensus 81 ~~~~~-----v~~~~g~~i~~d~lviAtG~~p~ 108 (454)
..... +...++..+++|.+++++|.+|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 206 GKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred cccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 76542 45557789999999999999885
No 248
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.96 E-value=4.7e-05 Score=82.00 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. |.+|+|+++.+.+.. ..+ +.+......+.+.+ +|+++.+ .+..+.
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~--G~~VtvVe~~~~ll~--------~~l-d~~~~~~l~~~L~~~GV~v~~~~~v~~I~ 214 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL--GVETHVIEFAPMLMA--------EQL-DQMGGEQLRRKIESMGVRVHTSKNTLEIV 214 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEeccccchh--------hhc-CHHHHHHHHHHHHHCCCEEEcCCeEEEEE
Confidence 3689999999999999999998 889999998764310 001 11222334455656 9999865 777786
Q ss_pred Ccc----cEEEeccCcEEEecEEEEecCCCCCC
Q psy1545 81 PRV----NCVITEKQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~~----~~v~~~~g~~i~~d~lviAtG~~p~~ 109 (454)
.+. ..+.+.+|+.+.+|.+|+|+|.+|+.
T Consensus 215 ~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 215 QEGVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred ecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 431 24667788999999999999999875
No 249
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.96 E-value=6.3e-05 Score=76.20 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=68.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..+++. |.+|+++++.+.+. +. . +.+......+.+.+ +++++.+ ++..+.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~--G~~Vtlie~~~~il-----~~----~-d~~~~~~l~~~l~~~gV~i~~~~~V~~i~ 242 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRL--GAQVTVVEYLDRIC-----PG----T-DTETAKTLQKALTKQGMKFKLGSKVTGAT 242 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCCCCC-----CC----C-CHHHHHHHHHHHHhcCCEEEECcEEEEEE
Confidence 4699999999999999999998 89999999876531 11 1 11233344455666 9999855 888887
Q ss_pred Cccc--EEEec---c--CcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN--CVITE---K--QNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~--~v~~~---~--g~~i~~d~lviAtG~~p~~~ 110 (454)
.... .+.+. + ++.+.+|.+++|+|.+|+..
T Consensus 243 ~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 243 AGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred EcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 5432 33332 2 35799999999999998764
No 250
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.95 E-value=3.7e-05 Score=75.40 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=69.4
Q ss_pred eEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPS 211 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (454)
+++|||||+.|+.+|..+. +.+|+++++.+.+. +.+.+...+......
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~---~~~~~~~~~~g~~~~------------------------ 53 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP---YSGMLPGMIAGHYSL------------------------ 53 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc---ccchhhHHHheeCCH------------------------
Confidence 5899999999999998883 67899999876532 122111111000000
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++. ....+.+++.||+++.+ .|+++...++ .|.+++|+++++|.+|+|||.+|+.+
T Consensus 54 --~~~~--~~~~~~~~~~gv~~~~~-~v~~id~~~~-----~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 54 --DEIR--IDLRRLARQAGARFVIA-EATGIDPDRR-----KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred --HHhc--ccHHHHHHhcCCEEEEE-EEEEEecccC-----EEEECCCCcccccEEEEccCCCCCCC
Confidence 0000 00122234579999886 7889987652 57888888899999999999999765
No 251
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.95 E-value=5.8e-05 Score=73.38 Aligned_cols=94 Identities=20% Similarity=0.226 Sum_probs=69.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCC-----------CCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEE
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHP-----------GESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTV 71 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~-----------g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~ 71 (454)
+++|+|||+.|.-.|-+|+++.+ ..+|+|+|+.+..- +.++. .+.....+.+.+ +|++
T Consensus 157 ti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL-----p~~~~-----~l~~~a~~~L~~~GV~v 226 (405)
T COG1252 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL-----PMFPP-----KLSKYAERALEKLGVEV 226 (405)
T ss_pred EEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc-----cCCCH-----HHHHHHHHHHHHCCCEE
Confidence 69999999999999999987511 24899999987652 22222 233334456666 9999
Q ss_pred Ecc-eEEEEeCcccEEEeccCc-EEEecEEEEecCCCCCC
Q psy1545 72 IVD-TVAAIDPRVNCVITEKQN-RIKYKTLCICTGASPRK 109 (454)
Q Consensus 72 ~~~-~v~~i~~~~~~v~~~~g~-~i~~d~lviAtG~~p~~ 109 (454)
+.+ .|+.++++. |++.+|+ +++++.+|-|+|.++..
T Consensus 227 ~l~~~Vt~v~~~~--v~~~~g~~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 227 LLGTPVTEVTPDG--VTLKDGEEEIPADTVVWAAGVRASP 264 (405)
T ss_pred EcCCceEEECCCc--EEEccCCeeEecCEEEEcCCCcCCh
Confidence 755 999999876 6666676 59999999999987643
No 252
>PRK07538 hypothetical protein; Provisional
Probab=97.94 E-value=6.3e-05 Score=75.07 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+||+|||||++|+++|..|++. |.+|+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence 4899999999999999999998 999999999864
No 253
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.94 E-value=8e-05 Score=75.02 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..|++. +.+|+|+++.+.+. +.+ +.+......+.+.+ +++++.+ ++..++
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l-----~~~-----~~~~~~~l~~~l~~~gV~v~~~~~v~~i~ 226 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF--GSKVTILEAASLFL-----PRE-----DRDIADNIATILRDQGVDIILNAHVERIS 226 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCC-----CCc-----CHHHHHHHHHHHHhCCCEEEeCCEEEEEE
Confidence 3699999999999999999998 89999999876431 111 12233334455666 9999854 888887
Q ss_pred CcccE--EEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PRVNC--VITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~~--v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.++.. +..+++ ++.+|.+++|+|.+|+..
T Consensus 227 ~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 227 HHENQVQVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred EcCCEEEEEEcCC-eEEeCEEEEeecCCcCCC
Confidence 55443 333333 689999999999998764
No 254
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.93 E-value=8.3e-05 Score=75.89 Aligned_cols=96 Identities=17% Similarity=0.082 Sum_probs=69.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++...+ +.+ +.+......+.+.+ +++++.+ .+..+.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~--G~~Vtli~~~~~l------~~~-----d~~~~~~l~~~l~~~GV~i~~~~~v~~v~ 249 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL--GFDVTVAVRSIPL------RGF-----DRQCSEKVVEYMKEQGTLFLEGVVPINIE 249 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCccc------ccC-----CHHHHHHHHHHHHHcCCEEEcCCeEEEEE
Confidence 3799999999999999999998 8899999764221 111 11233444555666 9999865 666665
Q ss_pred Ccc--cEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.+|+.+.+|.+++|+|.+|+...
T Consensus 250 ~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 250 KMDDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred EcCCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 332 2455567888999999999999987653
No 255
>KOG2665|consensus
Probab=97.92 E-value=2.5e-05 Score=71.36 Aligned_cols=39 Identities=21% Similarity=0.583 Sum_probs=35.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
.+|+||||||..|++.|.+|.-+.|+.+|.++|++..+.
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 489999999999999999999888999999999987653
No 256
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.89 E-value=9.2e-05 Score=75.14 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=69.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC-CCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH-PGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~-~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.+++|||||+.|+.+|..+..+. .|.+|+|+++.+.+. +.+ +.+......+.+.+ +++++.+ .+..+
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il-----~~~-----d~~~~~~l~~~L~~~GI~i~~~~~v~~i 257 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL-----RGF-----DSTLRKELTKQLRANGINIMTNENPAKV 257 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc-----ccc-----CHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 46999999999999997665431 178999999887541 111 12333444556666 9999865 78888
Q ss_pred eCc--c-cEEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 80 DPR--V-NCVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 80 ~~~--~-~~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
... . ..+.+.+++++.+|.+++|+|.+|...
T Consensus 258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 643 1 345666777899999999999998764
No 257
>KOG1336|consensus
Probab=97.89 E-value=8.4e-05 Score=72.08 Aligned_cols=99 Identities=14% Similarity=0.269 Sum_probs=76.5
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEeC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAIDP 81 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~~ 81 (454)
.||++|+|..|+-+|..|+.. ..+|++|++++.+- .. +-...+.+....+|.+ +++++.+ .+..++.
T Consensus 215 ~vV~vG~G~ig~Evaa~l~~~--~~~VT~V~~e~~~~--------~~-lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~ 283 (478)
T KOG1336|consen 215 KVVCVGGGFIGMEVAAALVSK--AKSVTVVFPEPWLL--------PR-LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEG 283 (478)
T ss_pred eEEEECchHHHHHHHHHHHhc--CceEEEEccCccch--------hh-hhhHHHHHHHHHHHHhcCeEEEEecceeeccc
Confidence 599999999999999999998 89999999987642 11 2223455566677777 9999866 5566654
Q ss_pred cc--c--EEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 82 RV--N--CVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 82 ~~--~--~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
+. + .|.+.+|+++.+|-|++.+|++|......
T Consensus 284 ~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 284 NSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred CCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 43 2 56778999999999999999999876543
No 258
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.88 E-value=1.3e-05 Score=81.47 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=38.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT 45 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~ 45 (454)
.+|+||||||++||+||..|++. |++|+|+|+++..+++.+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~--G~~V~VlE~~~~~GG~a~t 44 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA--GLKVTVLEKNDRVGGRART 44 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC--CCEEEEEEecCCCCcceEE
Confidence 58999999999999999999998 9999999999988875443
No 259
>PRK13748 putative mercuric reductase; Provisional
Probab=97.85 E-value=0.00013 Score=75.96 Aligned_cols=95 Identities=16% Similarity=0.235 Sum_probs=68.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+|+++.+.+. .+ +.+......+.+.+ +++++.+ .+..++
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtli~~~~~l~------~~-----d~~~~~~l~~~l~~~gI~i~~~~~v~~i~ 337 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL--GSKVTILARSTLFF------RE-----DPAIGEAVTAAFRAEGIEVLEHTQASQVA 337 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEecCcccc------cc-----CHHHHHHHHHHHHHCCCEEEcCCEEEEEE
Confidence 4799999999999999999998 88999998754221 11 12233444555666 9999854 888886
Q ss_pred CcccE--EEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVNC--VITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~~--v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.+... +.+.+ ..+.+|.+++|+|.+|+...
T Consensus 338 ~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 338 HVDGEFVLTTGH-GELRADKLLVATGRAPNTRS 369 (561)
T ss_pred ecCCEEEEEecC-CeEEeCEEEEccCCCcCCCC
Confidence 54333 33333 47999999999999988753
No 260
>PRK14727 putative mercuric reductase; Provisional
Probab=97.84 E-value=0.00014 Score=73.90 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=67.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..|++. +.+|+++++...+. .+ +.+......+.+.+ +++++.+ ++..++
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~--G~~Vtlv~~~~~l~------~~-----d~~~~~~l~~~L~~~GV~i~~~~~V~~i~ 255 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL--GSRVTILARSTLLF------RE-----DPLLGETLTACFEKEGIEVLNNTQASLVE 255 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCCCC------cc-----hHHHHHHHHHHHHhCCCEEEcCcEEEEEE
Confidence 4699999999999999999998 88999998753221 11 11233344455656 9999855 787776
Q ss_pred Cccc--EEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN--CVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~--~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
.... .+...+ .++.+|.+++|+|.+|+...
T Consensus 256 ~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 256 HDDNGFVLTTGH-GELRAEKLLISTGRHANTHD 287 (479)
T ss_pred EeCCEEEEEEcC-CeEEeCEEEEccCCCCCccC
Confidence 4433 344433 46999999999999987653
No 261
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.83 E-value=0.00014 Score=73.83 Aligned_cols=96 Identities=14% Similarity=0.116 Sum_probs=66.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+.+|..|++. +.+|+++++...+ +.+ +.+......+.+.+ +++++.+ .+..+.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~--G~~Vtli~~~~~l------~~~-----d~~~~~~l~~~L~~~gV~i~~~~~v~~v~ 247 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGI--GLDVTVMVRSILL------RGF-----DQDCANKVGEHMEEHGVKFKRQFVPIKVE 247 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHh--CCcEEEEEecccc------ccc-----CHHHHHHHHHHHHHcCCEEEeCceEEEEE
Confidence 3699999999999999999998 8899999864221 111 12233344455666 9999865 566665
Q ss_pred Ccc--cEEEeccC---cEEEecEEEEecCCCCCCCC
Q psy1545 81 PRV--NCVITEKQ---NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~--~~v~~~~g---~~i~~d~lviAtG~~p~~~~ 111 (454)
... ..+.+.++ +++.+|.+++|+|.+|....
T Consensus 248 ~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 248 QIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred EcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 332 23444444 37999999999999887653
No 262
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.83 E-value=2.6e-05 Score=69.35 Aligned_cols=156 Identities=20% Similarity=0.249 Sum_probs=95.8
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhH-HHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQ-DSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
+++|||||+.|+.+|..|. +.+|+++++.+..... ...+..... ..... ...... .+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~-~~~----------- 61 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYN--SGCIPSPLLVEIAPH-----RHEFLP-ARL----------- 61 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHH--HSHHHHHHHHHHHHH-----HHHHHH-HHH-----------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccc--ccccccccccccccc-----cccccc-ccc-----------
Confidence 6899999999999999997 8999999665432110 000000000 00000 000000 000
Q ss_pred CccccccccccCccCCceEEEeCceEEEEEcCCCC--ccceEE---EecCCcEEecCEEEEeeccCcCcccc--------
Q psy1545 214 PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDD--TCNAYV---KLTNGHTHACDIVVSAIGVVPNSNIQ-------- 280 (454)
Q Consensus 214 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~~~~v---~~~~g~~~~~D~vi~a~G~~p~~~~~-------- 280 (454)
..+.+.+...+++++.++++.++...... .....+ ...++.++.+|.+|+|+|.+|+...+
T Consensus 62 ------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~ 135 (201)
T PF07992_consen 62 ------FKLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYF 135 (201)
T ss_dssp ------GHHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECB
T ss_pred ------cccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccc
Confidence 01122234589999999999999876520 001112 23345789999999999998763300
Q ss_pred ---------------------------c-CCCCceecCCCceEeccccccccCceeecCcccccC
Q psy1545 281 ---------------------------V-HGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPS 317 (454)
Q Consensus 281 ---------------------------~-~~~~l~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~ 317 (454)
+ +..+++++++|++.||+++||+.|||||+|||++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 136 LRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp TTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 0 222456678999999999999999999999999753
No 263
>PRK07236 hypothetical protein; Provisional
Probab=97.83 E-value=0.00015 Score=71.79 Aligned_cols=140 Identities=14% Similarity=0.069 Sum_probs=77.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCc--chhhhHHHhhccCCCCh-hh--hhhhcccccC-C
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPG--AAEFFQDSINKTNTAKP-ET--IFKRMRYNTG-G 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~--~~~~~~~~l~~~~~~~~-~~--~~~~~~~~~~-~ 206 (454)
..+|+|||||+.|+.+|..|. |.+|+++++.+..... .... +.....+.|.+....+. .. ......+... +
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDG-RGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCC-CCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 578999999999999999997 9999999998754321 0000 11222222222100000 00 0000000000 0
Q ss_pred C-CCCCCCCc-cccccccccCc--cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 207 E-KGPSLGPD-WHTQVNLHGSS--RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 207 ~-~~~~l~~~-~~~~~~~~~~l--~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
. +.....+. ...+-.+.+.| .-.+++++.++.+++++.+++ .+.+.+++|+++.+|+||.|-|.+....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGD---RVTARFADGRRETADLLVGADGGRSTVR 157 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCC---eEEEEECCCCEEEeCEEEECCCCCchHH
Confidence 0 00000000 00000011111 113578999999999987653 5778899999999999999999877653
No 264
>PTZ00058 glutathione reductase; Provisional
Probab=97.82 E-value=0.00013 Score=74.96 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..+++. |.+|+++++.+.+. +. . +.+......+.+.+ +++++.+ .+..++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~--G~~Vtli~~~~~il-----~~----~-d~~i~~~l~~~L~~~GV~i~~~~~V~~I~ 305 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL--GAESYIFARGNRLL-----RK----F-DETIINELENDMKKNNINIITHANVEEIE 305 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCcEEEEEeccccc-----cc----C-CHHHHHHHHHHHHHCCCEEEeCCEEEEEE
Confidence 4699999999999999999998 89999999876431 11 1 12233344455666 9998755 788887
Q ss_pred Cccc---EEEecc-CcEEEecEEEEecCCCCCCCC
Q psy1545 81 PRVN---CVITEK-QNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 81 ~~~~---~v~~~~-g~~i~~d~lviAtG~~p~~~~ 111 (454)
..+. .+...+ ++++.+|.+++|+|.+|....
T Consensus 306 ~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 306 KVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred ecCCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence 5421 233333 357999999999999887643
No 265
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.80 E-value=0.00019 Score=66.22 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=99.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCc-------chhhhHHHhhccCCCChhhhhhhcccccC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPG-------AAEFFQDSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
.-.++|||+|+.|+-+|..++ |.+|.++++...+-....... +.......+. +..+.+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~------------~~gi~~~ 88 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILD------------EFGIRYE 88 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHH------------HCCCCee
Confidence 468999999999999999887 899999999876532111000 0000111111 1111110
Q ss_pred CCCCCCC----CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-----------CCcEEecCEEEEe
Q psy1545 206 GEKGPSL----GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-----------NGHTHACDIVVSA 270 (454)
Q Consensus 206 ~~~~~~l----~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-----------~g~~~~~D~vi~a 270 (454)
. ..... ..++... +.+...+.|++++.++.+.++..+++..+...+... +..+++++.||.|
T Consensus 89 ~-~~~g~~~~~~~el~~~--L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdA 165 (254)
T TIGR00292 89 D-EGDGYVVADSAEFIST--LASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDA 165 (254)
T ss_pred e-ccCceEEeeHHHHHHH--HHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEe
Confidence 0 00000 0111111 223345689999999999998765421123334432 1247899999999
Q ss_pred eccCcCcccccC-CCCceecC-----CCceEecc-------ccccccCceeecCcccccCCccccchhhccChHHH-HHH
Q psy1545 271 IGVVPNSNIQVH-GTPFELAP-----DCGIGVNE-------LMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA-KHM 336 (454)
Q Consensus 271 ~G~~p~~~~~~~-~~~l~~~~-----~g~i~vd~-------~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A-~~~ 336 (454)
||.......++. ..++.... .+....+. +-+--+|++|++|=.+... ...+ + +.-..-+ ...
T Consensus 166 TG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~-~~~~--r-mgp~fg~m~~s 241 (254)
T TIGR00292 166 TGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAV-HGLP--R-MGPIFGGMLLS 241 (254)
T ss_pred ecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhh-cCCC--C-cCchHHHHHHh
Confidence 997654321221 11111111 11122221 1112379999999876532 1111 1 1112223 356
Q ss_pred HHHHHhhhcCC
Q psy1545 337 GTYAAKCMVGA 347 (454)
Q Consensus 337 g~~aa~~i~~~ 347 (454)
|+.||+-++.+
T Consensus 242 g~~~a~~~~~~ 252 (254)
T TIGR00292 242 GKHVAEQILEK 252 (254)
T ss_pred hHHHHHHHHHH
Confidence 88888877654
No 266
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.78 E-value=0.00011 Score=75.77 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=39.9
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcCCC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAV 348 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~~~ 348 (454)
...|+|.||..+||++||+||+|+|++.. ...+... -.....|...|+.|+++++...
T Consensus 346 ~t~GGi~vd~~~~t~IpGLyAaGE~~gg~-hG~~rlg-G~sl~~a~v~Gr~Ag~~aa~~~ 403 (543)
T PRK06263 346 HFMGGIRINEDCETNIPGLFACGEVAGGV-HGANRLG-GNALADTQVFGAIAGKSAAKNA 403 (543)
T ss_pred EecCCEEECCCCcccCCCeEeccccccCC-CCCCccc-hhhhhhhHHHHHHHHHHHHHHh
Confidence 34688999999999999999999997532 2211100 0112357788999999887543
No 267
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.76 E-value=0.00024 Score=72.15 Aligned_cols=97 Identities=19% Similarity=0.309 Sum_probs=65.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhcCcEEEcc-eEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIVD-TVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~v~~i~~ 81 (454)
.+++|||||+.|+.+|..+++. |.+|+|+++.+.+. +.+ +.+......+.+.+.++++.+ .+..++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~--G~~Vtlv~~~~~il-----~~~-----d~~~~~~~~~~l~~~v~i~~~~~v~~i~~ 242 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL--GSEVDVVEMFDQVI-----PAA-----DKDIVKVFTKRIKKQFNIMLETKVTAVEA 242 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCCEEEEecCCCCC-----CcC-----CHHHHHHHHHHHhhceEEEcCCEEEEEEE
Confidence 4799999999999999999998 89999999887531 111 112222233334334676644 7777764
Q ss_pred cc--cEEEecc--C--cEEEecEEEEecCCCCCCCC
Q psy1545 82 RV--NCVITEK--Q--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 82 ~~--~~v~~~~--g--~~i~~d~lviAtG~~p~~~~ 111 (454)
.. ..+.+.+ + +++.+|.+|+|+|.+|....
T Consensus 243 ~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~ 278 (471)
T PRK06467 243 KEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKL 278 (471)
T ss_pred cCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCc
Confidence 33 2344333 2 36999999999999988753
No 268
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.76 E-value=0.00012 Score=71.89 Aligned_cols=35 Identities=29% Similarity=0.274 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+|+|||||++|+.+|..|++. |.+|+|+|+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~--G~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA--GVPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC--CCcEEEEeccccc
Confidence 3799999999999999999998 9999999987653
No 269
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.75 E-value=0.00023 Score=72.20 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=66.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhcCcEEEc-ceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIV-DTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~~i~~ 81 (454)
.+++|||||+.|+.+|..|++. +.+|+++++.+.... .+ +.+......+.+.+.++++. .++..++.
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~l~-----~~-----d~~~~~~~~~~l~~~I~i~~~~~v~~i~~ 237 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRL--GVKVTVFERGDRILP-----LE-----DPEVSKQAQKILSKEFKIKLGAKVTSVEK 237 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCcCc-----ch-----hHHHHHHHHHHHhhccEEEcCCEEEEEEE
Confidence 4799999999999999999998 889999998875421 00 11222222333332477764 47888865
Q ss_pred ccc-EEEe--ccC--cEEEecEEEEecCCCCCCCC
Q psy1545 82 RVN-CVIT--EKQ--NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 82 ~~~-~v~~--~~g--~~i~~d~lviAtG~~p~~~~ 111 (454)
... .+.+ .++ .++.+|.+++|+|.+|+...
T Consensus 238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~ 272 (460)
T PRK06292 238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDG 272 (460)
T ss_pred cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence 432 3332 223 47999999999999988764
No 270
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.73 E-value=8.6e-05 Score=75.09 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=31.2
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++++|||||+.|+++|..|. |.+|+++++.+.+
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~ 175 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKA 175 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCC
Confidence 3689999999999999999886 8999999987765
No 271
>PRK10262 thioredoxin reductase; Provisional
Probab=97.72 E-value=0.00026 Score=68.14 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=67.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~~i~ 80 (454)
.+++|||+|..|+.+|..|++. +.+|+++++.+.+.. .........+.+.+ +++++. ..++.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~--~~~Vtlv~~~~~~~~------------~~~~~~~~~~~l~~~gV~i~~~~~v~~v~ 212 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNI--ASEVHLIHRRDGFRA------------EKILIKRLMDKVENGNIILHTNRTLEEVT 212 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhh--CCEEEEEEECCccCC------------CHHHHHHHHhhccCCCeEEEeCCEEEEEE
Confidence 4799999999999999999998 889999998764210 01122333445555 899875 4788887
Q ss_pred Cccc---EEEeccC------cEEEecEEEEecCCCCCCC
Q psy1545 81 PRVN---CVITEKQ------NRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~~~---~v~~~~g------~~i~~d~lviAtG~~p~~~ 110 (454)
.+.. .|.+.++ +++.+|.|++++|.+|...
T Consensus 213 ~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 213 GDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred cCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 6542 3444322 3799999999999988654
No 272
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.72 E-value=3.6e-05 Score=77.79 Aligned_cols=40 Identities=33% Similarity=0.395 Sum_probs=35.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++|+|||||+|||+||+.|++.+++++|+|+|+++.+++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr 40 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK 40 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcce
Confidence 3799999999999999999998445899999999887754
No 273
>KOG0029|consensus
Probab=97.70 E-value=3.8e-05 Score=77.47 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+.+|||||||+|||+||+.|.+. |.+|+|+|..+..++
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~--G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDF--GFDVLVLEARDRVGG 52 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc--CCceEEEeccCCcCc
Confidence 46899999999999999999998 999999999988765
No 274
>KOG2311|consensus
Probab=97.69 E-value=9.2e-05 Score=71.42 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
+|||||||||.||..||...++. |.+.+|+..+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~--Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARL--GARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhc--CCceEEeecc
Confidence 47999999999999999999999 8888888775
No 275
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.68 E-value=0.00038 Score=69.08 Aligned_cols=140 Identities=15% Similarity=0.184 Sum_probs=78.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHHhhccCCCChhhhhhhccccc--CC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNT--GG 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~ 206 (454)
+.+|+|||||+.|+-+|..|. |.+|+++++.+.+... .+.+...+.+...-......+.........+.. .+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 678999999999999999996 9999999998764321 122222222211100000000000000000100 00
Q ss_pred -C-----CC----CCCCCccc--ccc----ccccCccCC-ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEE
Q psy1545 207 -E-----KG----PSLGPDWH--TQV----NLHGSSRDT-KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269 (454)
Q Consensus 207 -~-----~~----~~l~~~~~--~~~----~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~ 269 (454)
. .. ..++..+. .+. .+.+.+.+. +++++.++.+++++.+++ .+.+.+.+|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~---~v~v~~~~g~~~~ad~vV~ 160 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD---GVTVFDQQGNRWTGDALIG 160 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC---ceEEEEcCCCEEecCEEEE
Confidence 0 00 00111100 000 022323333 599999999999987553 4678888888899999999
Q ss_pred eeccCcCc
Q psy1545 270 AIGVVPNS 277 (454)
Q Consensus 270 a~G~~p~~ 277 (454)
|.|.....
T Consensus 161 AdG~~S~~ 168 (396)
T PRK08163 161 CDGVKSVV 168 (396)
T ss_pred CCCcChHH
Confidence 99998755
No 276
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.67 E-value=0.00011 Score=71.67 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=32.1
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
.+++++|||+|+.|+++|..|. |.+|+++++.+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g 54 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG 54 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 4789999999999999999886 89999999887654
No 277
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.67 E-value=0.00037 Score=72.87 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=67.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHH-hc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKF-EG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~~~~~-~v~~i 79 (454)
.+++|||||+.|+..|..+++. +.+|+|+++.+.+.. . + +.+......+.+ .+ +|+++.+ .+..+
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~--G~eVTLIe~~~~ll~-----~----~-d~eis~~l~~~ll~~~GV~I~~~~~V~~I 380 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL--GSEVVSFEYSPQLLP-----L----L-DADVAKYFERVFLKSKPVRVHLNTLIEYV 380 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC--CCeEEEEeccCcccc-----c----C-CHHHHHHHHHHHhhcCCcEEEcCCEEEEE
Confidence 4699999999999999999998 889999999875421 1 1 112223333333 34 8999755 88888
Q ss_pred eCcc--c--EEEecc-------C--------cEEEecEEEEecCCCCCCCC
Q psy1545 80 DPRV--N--CVITEK-------Q--------NRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 80 ~~~~--~--~v~~~~-------g--------~~i~~d~lviAtG~~p~~~~ 111 (454)
+..+ . .+.+.+ + +++.+|.+++|+|.+|+...
T Consensus 381 ~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~ 431 (659)
T PTZ00153 381 RAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN 431 (659)
T ss_pred EecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence 6543 1 232211 1 26999999999999988754
No 278
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.65 E-value=0.0003 Score=73.81 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||+||||||+|+++|..|++. .|.+|+|||+.+
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~-~Gi~v~IiE~~~ 66 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAF-PDITTRIVERKP 66 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcC-CCCcEEEEEcCC
Confidence 47999999999999999999993 289999999874
No 279
>PRK09126 hypothetical protein; Provisional
Probab=97.64 E-value=0.00017 Score=71.43 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=41.0
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+..|++++.++++++++..++ .+.+.+++|+++.+|+||.|.|..+...
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~~---~~~v~~~~g~~~~a~~vI~AdG~~S~vr 170 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDDD---GAQVTLANGRRLTARLLVAADSRFSATR 170 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcCC---eEEEEEcCCCEEEeCEEEEeCCCCchhh
Confidence 446999999999999986553 4678888998999999999999987654
No 280
>PRK07208 hypothetical protein; Provisional
Probab=97.63 E-value=5.6e-05 Score=77.05 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=35.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||++||+||+.|++. |.+|+|+|+++..++.
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~--g~~v~v~E~~~~~GG~ 42 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR--GYPVTVLEADPVVGGI 42 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCce
Confidence 57999999999999999999998 8999999999887764
No 281
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.62 E-value=6.3e-05 Score=72.81 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=69.8
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEE-eCCCccccccCCcchhh----hHHHhhccCCC-----Chhhhhhhccccc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVV-KDKHISATFLDPGAAEF----FQDSINKTNTA-----KPETIFKRMRYNT 204 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~-~~~~~~~~~~d~~~~~~----~~~~l~~~~~~-----~~~~~~~~~~~~~ 204 (454)
.|+|||||..|+|+|..++ |.+|.++. +.+.+..-...|.+... +.+.+...... +...+..++-...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999987 99999994 43443321223333322 33333220000 0000000111111
Q ss_pred CCCCCCCCCCccccccc---cccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 205 GGEKGPSLGPDWHTQVN---LHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 205 ~~~~~~~l~~~~~~~~~---~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
..+-...+-..+.+..+ +.+.+ ...+++++. ..|+++..++ +....|.+.+|..+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEecC--CeEEEEEeCCCCEEecCEEEEeccc
Confidence 11111111001111110 23334 347899975 5899987665 4578899999999999999999999
No 282
>PLN02546 glutathione reductase
Probab=97.61 E-value=0.00046 Score=71.08 Aligned_cols=96 Identities=17% Similarity=0.128 Sum_probs=66.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||+.|+..|..|++. +.+|+|+++.+... +. + +.+......+.+.+ +|+++.+ .+..+.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~--g~~Vtlv~~~~~il-----~~----~-d~~~~~~l~~~L~~~GV~i~~~~~v~~i~ 320 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL--KSDVHVFIRQKKVL-----RG----F-DEEVRDFVAEQMSLRGIEFHTEESPQAII 320 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc--CCeEEEEEeccccc-----cc----c-CHHHHHHHHHHHHHCCcEEEeCCEEEEEE
Confidence 4799999999999999999988 88999999876431 01 1 11222333455555 9999754 777775
Q ss_pred Cc-cc--EEEeccCcEEEecEEEEecCCCCCCC
Q psy1545 81 PR-VN--CVITEKQNRIKYKTLCICTGASPRKI 110 (454)
Q Consensus 81 ~~-~~--~v~~~~g~~i~~d~lviAtG~~p~~~ 110 (454)
.. .. .+.+.+++...+|.+++|+|.+|+..
T Consensus 321 ~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 321 KSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred EcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 32 22 33344444455899999999998764
No 283
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.61 E-value=0.00045 Score=68.47 Aligned_cols=52 Identities=12% Similarity=0.261 Sum_probs=42.5
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+.+++.|++++.++.+++++.+++ .+.+++++|+++.+|+||.|.|..+...
T Consensus 121 ~~~~~~gv~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~a~~vV~AdG~~S~vr 172 (392)
T PRK08773 121 AALHAAGVQLHCPARVVALEQDAD---RVRLRLDDGRRLEAALAIAADGAASTLR 172 (392)
T ss_pred HHHHhCCCEEEcCCeEEEEEecCC---eEEEEECCCCEEEeCEEEEecCCCchHH
Confidence 334667999999999999987653 4668888888899999999999988543
No 284
>PRK06834 hypothetical protein; Provisional
Probab=97.60 E-value=0.0005 Score=70.00 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=78.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc---cc--ccCCcchhhhHH-----HhhccCCCChhhh-hhhccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS---AT--FLDPGAAEFFQD-----SINKTNTAKPETI-FKRMRY 202 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~---~~--~~d~~~~~~~~~-----~l~~~~~~~~~~~-~~~~~~ 202 (454)
..|+|||+|+.|+-+|..|. |.+|+++++.+... ++ .+.+...+.+.. .+.+. ....... .....+
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~-~~~~~~~~~~~~~~ 82 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQ-GQVAQVTGFAATRL 82 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhc-CCccccceeeeEec
Confidence 57999999999999999996 99999999876432 11 122222222211 11100 0000000 000001
Q ss_pred ccCCCCCC--CCCCcccc-cc--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 203 NTGGEKGP--SLGPDWHT-QV--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 203 ~~~~~~~~--~l~~~~~~-~~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
... .... ..+-.+.+ .+ .+.+.+++.|++++.++++++++.+++ .+.+++.+|+++.+|+||.|.|.++..
T Consensus 83 ~~~-~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~---~v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 83 DIS-DFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDT---GVDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred ccc-cCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC---eEEEEECCCCEEEeCEEEEecCCCCCc
Confidence 000 0000 01100110 00 123444667999999999999987653 466777788889999999999998754
Q ss_pred c
Q psy1545 278 N 278 (454)
Q Consensus 278 ~ 278 (454)
.
T Consensus 159 R 159 (488)
T PRK06834 159 R 159 (488)
T ss_pred H
Confidence 3
No 285
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.60 E-value=0.00011 Score=80.11 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=63.3
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchh-hhHHHhhccCCCChhhhhhhcccccCCCCCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAE-FFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (454)
.+++|+|||+|+.|+.+|..|+ |.+||++++.+.+-.- +...+-. .+.+.+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~-l~yGIP~~rlp~~vi~----------------------- 360 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV-LRYGIPEFRLPNQLID----------------------- 360 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce-EEccCCCCcChHHHHH-----------------------
Confidence 4799999999999999999986 9999999987654331 1100000 00000000
Q ss_pred CCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC-cCc
Q psy1545 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV-PNS 277 (454)
Q Consensus 211 ~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~-p~~ 277 (454)
...+.+++.||++++|+.+. ..+.+++.....+|.|++|||.. |..
T Consensus 361 ----------~~i~~l~~~Gv~f~~n~~vG-----------~dit~~~l~~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 361 ----------DVVEKIKLLGGRFVKNFVVG-----------KTATLEDLKAAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred ----------HHHHHHHhhcCeEEEeEEec-----------cEEeHHHhccccCCEEEEeCCCCCCCc
Confidence 01223355899999997542 12455555556799999999995 543
No 286
>PRK07588 hypothetical protein; Provisional
Probab=97.59 E-value=0.00035 Score=69.22 Aligned_cols=133 Identities=15% Similarity=0.212 Sum_probs=76.2
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCcchhhhH-----HHhhccCCCChhhhhhhcccccC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPGAAEFFQ-----DSINKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~ 205 (454)
+|+|||||+.|+-+|..|+ |.+|+++++.+.+.... +.+...+.+. +.+.+ .... .....+...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~-~~~~----~~~~~~~~~ 76 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLRE-AGYQ----IEHVRSVDP 76 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHh-ccCC----ccceEEEcC
Confidence 7999999999999999987 99999999887643210 1111111111 11111 0000 000111000
Q ss_pred -CC---------CCCCCCCccc---cc-cc--cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEE
Q psy1545 206 -GE---------KGPSLGPDWH---TQ-VN--LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269 (454)
Q Consensus 206 -~~---------~~~~l~~~~~---~~-~~--~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~ 269 (454)
+. .....+..+. .. +. +.+.+ ..++++++++++++++.+++ .+.+.+++|+++++|+||-
T Consensus 77 ~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~~d~vIg 152 (391)
T PRK07588 77 TGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRD---GVRVTFERGTPRDFDLVIG 152 (391)
T ss_pred CCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCC---eEEEEECCCCEEEeCEEEE
Confidence 00 0011111110 00 00 11222 34799999999999987653 5678889998899999999
Q ss_pred eeccCcCcc
Q psy1545 270 AIGVVPNSN 278 (454)
Q Consensus 270 a~G~~p~~~ 278 (454)
|.|.+....
T Consensus 153 ADG~~S~vR 161 (391)
T PRK07588 153 ADGLHSHVR 161 (391)
T ss_pred CCCCCccch
Confidence 999977654
No 287
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.59 E-value=0.00022 Score=70.98 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=42.5
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+.+++.|++++.++++.+++.+++ .+.+.+++|+++.+|+||.|.|......
T Consensus 120 ~~~~~~gv~v~~~~~v~~i~~~~~---~v~v~~~~g~~~~a~~vVgAdG~~S~vR 171 (405)
T PRK05714 120 ERLHDSDIGLLANARLEQMRRSGD---DWLLTLADGRQLRAPLVVAADGANSAVR 171 (405)
T ss_pred HHHhcCCCEEEcCCEEEEEEEcCC---eEEEEECCCCEEEeCEEEEecCCCchhH
Confidence 344567999999999999987653 4678888998899999999999977553
No 288
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.58 E-value=7.1e-05 Score=75.92 Aligned_cols=40 Identities=33% Similarity=0.357 Sum_probs=35.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCC--CCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHP--GESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~--g~~v~lie~~~~~~~~ 42 (454)
+||+|||||++||+||+.|++..+ |.+|+|+|+++..++.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~ 44 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGK 44 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcce
Confidence 689999999999999999999755 8899999999887654
No 289
>PRK06753 hypothetical protein; Provisional
Probab=97.58 E-value=0.00048 Score=67.74 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=74.6
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHH-hhccCCCChhhhhhhcccccC-CCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDS-INKTNTAKPETIFKRMRYNTG-GEK 208 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~-~~~ 208 (454)
+|+|||||+.|+-+|..|+ |.+|+++++.+.+... .+.+...+.+... +.+.-..... ......+... +..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~-~~~~~~~~~~~g~~ 80 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQ-ILSTMNLLDDKGTL 80 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCC-cccceeEEcCCCCE
Confidence 7999999999999999996 9999999988765321 1122222222110 0000000000 0000001000 000
Q ss_pred -C-CCC--CCc-c-ccccccccCc--cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 209 -G-PSL--GPD-W-HTQVNLHGSS--RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 209 -~-~~l--~~~-~-~~~~~~~~~l--~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
. ..+ .+. + -.+-.+.+.| .-.+.++++++++++++.+++ .+.+.+++|+++.+|+||-|-|.+....
T Consensus 81 ~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~---~v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 81 LNKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETD---KVTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred EeecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCC---cEEEEECCCCEEecCEEEECCCcchHHH
Confidence 0 000 000 0 0011111222 112467999999999986543 5778889999999999999999876554
No 290
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.58 E-value=7.1e-05 Score=73.16 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=33.2
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|+.||+|||||++|+.+|..|++. |.+|+|+|+.+..
T Consensus 1 ~~~dVvVIGGGlAGleAAlaLAr~--Gl~V~LiE~rp~~ 37 (436)
T PRK05335 1 MMKPVNVIGAGLAGSEAAWQLAKR--GVPVELYEMRPVK 37 (436)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccCcc
Confidence 667999999999999999999998 9999999976543
No 291
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.57 E-value=0.00046 Score=65.21 Aligned_cols=136 Identities=12% Similarity=0.104 Sum_probs=71.6
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCC--CCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGE--KGPSL 212 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~l 212 (454)
.|+|||||+.|+-+|..|+ |.+|+++++++..........+.....+.+.......... .....+..... .....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNL-VRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhh-eeeEEEEcCCCcEEEecc
Confidence 4899999999999999986 9999999988653221011111111111111100000000 00000000000 00000
Q ss_pred -CCcc--ccc--c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC-CcEEecCEEEEeeccCcC
Q psy1545 213 -GPDW--HTQ--V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN-GHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 213 -~~~~--~~~--~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g~~~~~D~vi~a~G~~p~ 276 (454)
.+.. ..+ + .+.+..++.|++++.+++++++..+++ .+.+.+++ +.++++|+||.|+|....
T Consensus 81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD---RVVVIVRGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC---EEEEEEcCccEEEEeCEEEECCCcchH
Confidence 0000 011 0 123344667999999999999876553 34454443 467999999999998753
No 292
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.57 E-value=8.6e-05 Score=72.28 Aligned_cols=37 Identities=27% Similarity=0.531 Sum_probs=33.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+|++|||||++|+++|..|++. |.+|+|+|+.+..++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~--G~~V~viEk~~~iGG 38 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL--NKRVLVVEKRNHIGG 38 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCC
Confidence 7999999999999999999987 899999999877665
No 293
>PRK06184 hypothetical protein; Provisional
Probab=97.56 E-value=0.00036 Score=71.56 Aligned_cols=133 Identities=19% Similarity=0.264 Sum_probs=75.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHH-----HhhccCCCChhhhhhhccccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQD-----SINKTNTAKPETIFKRMRYNT 204 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 204 (454)
-.|+|||+|+.|+-+|..|. |.+|+++++.+.+... .+.+...+.+.+ .+.+.... .....+..
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~-----~~~~~~~~ 78 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGL-----YPPMRIYR 78 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCcc-----ccceeEEe
Confidence 47999999999999999997 9999999998765331 122222222221 11100000 00000000
Q ss_pred C-CC-----C----CC----CCCCc-cccc--c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCcEE
Q psy1545 205 G-GE-----K----GP----SLGPD-WHTQ--V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHTH 262 (454)
Q Consensus 205 ~-~~-----~----~~----~l~~~-~~~~--~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~~ 262 (454)
. .. + .. ..... ...+ + .+.+.+++.|++++.++++++++.+++ .+.+.+ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~---~v~v~~~~~~~~~~i 155 (502)
T PRK06184 79 DDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDAD---GVTARVAGPAGEETV 155 (502)
T ss_pred CCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC---cEEEEEEeCCCeEEE
Confidence 0 00 0 00 00000 0001 0 133445567999999999999987653 355555 556789
Q ss_pred ecCEEEEeeccCcC
Q psy1545 263 ACDIVVSAIGVVPN 276 (454)
Q Consensus 263 ~~D~vi~a~G~~p~ 276 (454)
.+|+||.|.|.+..
T Consensus 156 ~a~~vVgADG~~S~ 169 (502)
T PRK06184 156 RARYLVGADGGRSF 169 (502)
T ss_pred EeCEEEECCCCchH
Confidence 99999999998753
No 294
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.55 E-value=0.00023 Score=76.83 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=30.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++|+|||||+.|+.+|..|+ |.+|+++++.+.+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 679999999999999999997 9999999987654
No 295
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.55 E-value=8.9e-05 Score=75.84 Aligned_cols=39 Identities=31% Similarity=0.466 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||+|||||..|+++|+.|+++ |.+|+|+|++++..+.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r--Gl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGR--GLSVLLCEQDDLASAT 44 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCCc
Confidence 48999999999999999999998 9999999998775443
No 296
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=8.1e-05 Score=73.34 Aligned_cols=40 Identities=23% Similarity=0.290 Sum_probs=36.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
++|+|+|||.|||+||++|++. |++|+|+|+.+..++...
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~--g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA--GYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC--CCceEEEeccCccCceee
Confidence 4799999999999999999999 999999999999876443
No 297
>PRK07045 putative monooxygenase; Reviewed
Probab=97.54 E-value=0.00047 Score=68.24 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=79.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHH-hhccCCCChhhhhhhcccccCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDS-INKTNTAKPETIFKRMRYNTGGE 207 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~ 207 (454)
..+|+|||||+.|+-+|..|+ |.+|+++++.+..... .+.+...+.+.+. +.+...+..........+...+.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~ 84 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKE 84 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCc
Confidence 358999999999999999997 9999999988765321 1223222322211 00000000000000011110000
Q ss_pred ------CCC--CCCCcc-ccccc----cccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 208 ------KGP--SLGPDW-HTQVN----LHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 208 ------~~~--~l~~~~-~~~~~----~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
... ..+..+ -.+.. +.+.+ ...|++++++++++.++.+++ +..+.+.+++|+++.+|+||-|.|.
T Consensus 85 ~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~~v~~~~g~~~~~~~vIgADG~ 163 (388)
T PRK07045 85 LIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDAD-GTVTSVTLSDGERVAPTVLVGADGA 163 (388)
T ss_pred EEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC-CcEEEEEeCCCCEEECCEEEECCCC
Confidence 000 011000 00001 12222 346899999999999987653 2235688889999999999999999
Q ss_pred CcCcc
Q psy1545 274 VPNSN 278 (454)
Q Consensus 274 ~p~~~ 278 (454)
+....
T Consensus 164 ~S~vR 168 (388)
T PRK07045 164 RSMIR 168 (388)
T ss_pred ChHHH
Confidence 87544
No 298
>PRK07233 hypothetical protein; Provisional
Probab=97.54 E-value=8.6e-05 Score=74.58 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=34.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
+|+|||||++||+||+.|++. |++|+|+|+++.+++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~--G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR--GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEEeCCCCCCce
Confidence 689999999999999999998 89999999999887643
No 299
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.53 E-value=9.9e-05 Score=72.95 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.6
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
|++||+|||||.+|+++|++|++. |.+|+++|++....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~~~~ 40 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGEAGG 40 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCccCC
Confidence 478999999999999999999998 77999999987654
No 300
>PLN02268 probable polyamine oxidase
Probab=97.52 E-value=9.7e-05 Score=74.30 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+|+|||||.+||+||+.|.+. |++|+|+|+.+..++-
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~--g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA--SFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCce
Confidence 3799999999999999999997 8999999999888764
No 301
>KOG2415|consensus
Probab=97.52 E-value=8.7e-05 Score=70.42 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=34.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhc----CCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFL----HPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~----~~g~~v~lie~~~~~~~ 41 (454)
+||+|||||||||+||++|+++ +.+.+|+++|+....++
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gg 119 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGG 119 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCC
Confidence 7999999999999999999876 34679999999987764
No 302
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.51 E-value=0.0001 Score=75.38 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||||+.|+++|+.|+++ |.+|+|+|+++...+
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~r--G~~V~LlEk~d~~~G 43 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGR--GLKVLLCEKDDLAQG 43 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC--CCcEEEEECCCCCCC
Confidence 58999999999999999999998 899999999976544
No 303
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.51 E-value=0.00028 Score=69.80 Aligned_cols=141 Identities=22% Similarity=0.300 Sum_probs=79.4
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeC-CCccccc----cCCcchhhhHHHhh-ccCCCChhhhhhhcccccCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKD-KHISATF----LDPGAAEFFQDSIN-KTNTAKPETIFKRMRYNTGG 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~-~~~~~~~----~d~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~ 206 (454)
...|+|||||+.|+-+|..|. |.+|+++++. ..+.+.. +.+...+.+.+.-- +...+........+.+....
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 357999999999999999997 9999999997 3333321 22322222222111 10000000000001111000
Q ss_pred ---------CCC-CCCCCccccc---cccccCccCC-ceEEEeCceEEEEEcCCCCccceEEEec-CCcEEecCEEEEee
Q psy1545 207 ---------EKG-PSLGPDWHTQ---VNLHGSSRDT-KITIEYSCEVERIVDSEDDTCNAYVKLT-NGHTHACDIVVSAI 271 (454)
Q Consensus 207 ---------~~~-~~l~~~~~~~---~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g~~~~~D~vi~a~ 271 (454)
... ..++--+... -.+.+.+.+. +|+++.++.|+.++.+++ .+.++++ +|+++.||+||-|=
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~---~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD---GVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC---ceEEEEcCCCcEEecCEEEECC
Confidence 011 1111111111 0123334444 499999999999998764 4557777 99999999999999
Q ss_pred ccCcCcc
Q psy1545 272 GVVPNSN 278 (454)
Q Consensus 272 G~~p~~~ 278 (454)
|......
T Consensus 159 G~~S~vR 165 (387)
T COG0654 159 GANSAVR 165 (387)
T ss_pred CCchHHH
Confidence 9876543
No 304
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.51 E-value=0.0001 Score=75.33 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=41.6
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
+.+.+++.|++|+.++.|++|..++ ++...|++.+|+++++|.||+++|..
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChH
Confidence 3455577899999999999998654 34677888899889999999998764
No 305
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.50 E-value=0.00011 Score=74.51 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=34.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC----CCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH----PGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~----~g~~v~lie~~~~~~~~ 42 (454)
.+|+|||||++||+||+.|.+.+ .+.+|+|+|+++.+++.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr 45 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGK 45 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccce
Confidence 47999999999999999999863 24799999999887654
No 306
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.50 E-value=0.00011 Score=75.14 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=36.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
.||||||||++||+||..|++. |.+|+|+|+++.++++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~--G~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR--GYRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCCccc
Confidence 5899999999999999999998 999999999988876543
No 307
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.49 E-value=0.00072 Score=67.51 Aligned_cols=135 Identities=13% Similarity=0.246 Sum_probs=73.8
Q ss_pred eEEEEcCchhHHHHHHHhc--C-CcEEEEEeCCCcccc----ccCCcchhhhHHHhhccCCCChhhhh-------hhc--
Q psy1545 137 KIVVIGNGGIATELVHELS--N-VDIVWVVKDKHISAT----FLDPGAAEFFQDSINKTNTAKPETIF-------KRM-- 200 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g-~~V~~i~~~~~~~~~----~~d~~~~~~~~~~l~~~~~~~~~~~~-------~~~-- 200 (454)
+|+|||||+.|+-+|..|. | .+|+++++.+.+... .+.+.....+...--. +...... ...
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~---~~~~~~~~~~~~~~~~~~~ 78 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLG---EAYTQVADSTPAPWQDIWF 78 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCCh---hHHHHHhcCCCccCcceeE
Confidence 7999999999999999996 6 599999998765421 1233322222221000 0000000 000
Q ss_pred ccccCC---CCCCCCCCccc----cccccccCc-cC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEee
Q psy1545 201 RYNTGG---EKGPSLGPDWH----TQVNLHGSS-RD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 201 ~~~~~~---~~~~~l~~~~~----~~~~~~~~l-~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~ 271 (454)
.+.... .+.....+... .+-.+.+.| +. .++.++.+++|++++..++ .+.+.+++|+++++|+||.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~---~~~v~~~~g~~~~ad~vVgAD 155 (414)
T TIGR03219 79 EWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAE---EVQVLFTDGTEYRCDLLIGAD 155 (414)
T ss_pred EEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCC---cEEEEEcCCCEEEeeEEEECC
Confidence 000000 00000001000 000011111 11 2456788999999987653 477888999899999999999
Q ss_pred ccCcCc
Q psy1545 272 GVVPNS 277 (454)
Q Consensus 272 G~~p~~ 277 (454)
|.....
T Consensus 156 G~~S~v 161 (414)
T TIGR03219 156 GIKSAL 161 (414)
T ss_pred CccHHH
Confidence 987653
No 308
>KOG2495|consensus
Probab=97.48 E-value=0.0002 Score=68.46 Aligned_cols=95 Identities=22% Similarity=0.347 Sum_probs=68.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhc------------CCCCeEEEECCCCccccccccccccccccccc--hhhhHHHHHhc-
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFL------------HPGESIGLVTPSGIVKAVTKTVPVTKLLSDIT--VEETDANKFEG- 67 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~------------~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~- 67 (454)
.++|||||||.|..+|.+|+.. ....+|+++|..+.. +..|+ +.....+.+.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i------------L~mFdkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI------------LNMFDKRLVEYAENQFVRD 286 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH------------HHHHHHHHHHHHHHHhhhc
Confidence 3689999999999999999753 125689999998754 11121 22222344555
Q ss_pred CcEEEcc-eEEEEeCcccEEEeccC--cEEEecEEEEecCCCCCC
Q psy1545 68 LCTVIVD-TVAAIDPRVNCVITEKQ--NRIKYKTLCICTGASPRK 109 (454)
Q Consensus 68 ~i~~~~~-~v~~i~~~~~~v~~~~g--~~i~~d~lviAtG~~p~~ 109 (454)
+|++..+ .|..++.++..+.+.+| +.++|--||-|||..|+.
T Consensus 287 ~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp 331 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRP 331 (491)
T ss_pred cceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCch
Confidence 9999876 77888877666666555 479999999999987764
No 309
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.46 E-value=0.00014 Score=72.75 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
||||||+|.||++||+++++. |.+|+|||+.+..++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~--G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA--GAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT--TT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhh--cCeEEEEEeeccccc
Confidence 899999999999999999998 899999999987544
No 310
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.46 E-value=0.00015 Score=71.16 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=32.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||+|||||++|+++|++|++. |.+|+|+|+....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~--G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR--GLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence 5899999999999999999998 8999999998754
No 311
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.46 E-value=0.00089 Score=68.49 Aligned_cols=169 Identities=21% Similarity=0.242 Sum_probs=82.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccccc-CCc----chhhhHHHhhccCCCChhhhhhhcccccCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFL-DPG----AAEFFQDSINKTNTAKPETIFKRMRYNTGGEK 208 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~-d~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (454)
|||+|||+|++|+-.|..+. |.+++++++.+.+-..+. +.. .+..+ +.+. .+.+.. .+.+. .-++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y-~sl~---~n~sk~---~~~fs-dfp~ 73 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVY-DSLH---TNTSKE---MMAFS-DFPF 73 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGS-TT-B----SS-GG---GSCCT-TS-H
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccc-cceE---EeeCch---HhcCC-CcCC
Confidence 79999999999999999886 999999999887765432 110 01111 0000 000000 00000 0111
Q ss_pred CCCCCCccccccc----cccCccCCc--eEEEeCceEEEEEcCCC--CccceEEEecC-C--cEEecCEEEEeeccC--c
Q psy1545 209 GPSLGPDWHTQVN----LHGSSRDTK--ITIEYSCEVERIVDSED--DTCNAYVKLTN-G--HTHACDIVVSAIGVV--P 275 (454)
Q Consensus 209 ~~~l~~~~~~~~~----~~~~l~~~g--v~i~~~~~v~~i~~~~~--~~~~~~v~~~~-g--~~~~~D~vi~a~G~~--p 275 (454)
.... |.+...-. +.+-.+..+ -.+++|++|.+++..++ ....+.|..++ | ++..+|.|++|+|.. |
T Consensus 74 p~~~-p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 74 PEDY-PDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp CCCC-SSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred CCCC-CCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence 1111 11111111 111112223 36889999999986432 12356777654 3 345689999999985 3
Q ss_pred CcccccCCCCceecCCCceEecccccc----ccCceeecCcccc
Q psy1545 276 NSNIQVHGTPFELAPDCGIGVNELMQT----SISNVYAAGDVCT 315 (454)
Q Consensus 276 ~~~~~~~~~~l~~~~~g~i~vd~~~~t----~~~~Iya~GD~~~ 315 (454)
+.+ .-.-.|++. =+|.+.-...++. ..++|-++|-..+
T Consensus 153 ~~P-~~~~~G~e~-F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 153 NIP-EPSFPGLEK-FKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp SB------CTGGG-HCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred CCC-hhhhhhhhc-CCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 332 101234431 2465555544542 2467888886544
No 312
>KOG1298|consensus
Probab=97.45 E-value=0.00047 Score=65.00 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=30.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~ 36 (454)
.||+|||||.+|.+.|+.|++. |.+|.+|||.
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kd--GRrVhVIERD 77 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKD--GRRVHVIERD 77 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhC--CcEEEEEecc
Confidence 6999999999999999999998 9999999996
No 313
>KOG1399|consensus
Probab=97.45 E-value=0.0011 Score=65.80 Aligned_cols=173 Identities=18% Similarity=0.192 Sum_probs=90.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchh----hhHHHhhccCCCChhhhhhhcccccCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAE----FFQDSINKTNTAKPETIFKRMRYNTGGEK 208 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (454)
.++++|||+|++|+-.|..|. |.++++++|.+.+-.-+.-.+-.+ -+.+.++- +.+.....-..+-+.+..
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~t---n~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRT---NLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhc---cCChhhhcCCCCCCcccC
Confidence 689999999999999999987 999999999988765443221111 11122211 111111111111111110
Q ss_pred CCCCCCcccccc-ccccCccCCc--eEEEeCceEEEEEcCCCCccceEEEecCC----cEEecCEEEEeeccC--cCccc
Q psy1545 209 GPSLGPDWHTQV-NLHGSSRDTK--ITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGVV--PNSNI 279 (454)
Q Consensus 209 ~~~l~~~~~~~~-~~~~~l~~~g--v~i~~~~~v~~i~~~~~~~~~~~v~~~~g----~~~~~D~vi~a~G~~--p~~~~ 279 (454)
+..-|.-...+ ++..-.+.-+ ..+.+++.+.++....+ +.+.|...+. .+.-+|.|++|+|.. |+.+
T Consensus 83 -~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~--gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P- 158 (448)
T KOG1399|consen 83 -PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK--GKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIP- 158 (448)
T ss_pred -cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC--CceeEEEecCCcceeEEEeeEEEEcccCcCCCCCC-
Confidence 11101110111 1122223334 36788888888877642 2577777554 467899999999998 4443
Q ss_pred ccCCCCceecCCCceEeccccc-c---ccCceeecCcccc
Q psy1545 280 QVHGTPFELAPDCGIGVNELMQ-T---SISNVYAAGDVCT 315 (454)
Q Consensus 280 ~~~~~~l~~~~~g~i~vd~~~~-t---~~~~Iya~GD~~~ 315 (454)
.+...+++. =.|.+.-...++ . ....|.++|--.+
T Consensus 159 ~~~g~~~~~-f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 159 QIPGPGIES-FKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred cCCCCchhh-cCCcceehhhccCcccccCceEEEECCCcc
Confidence 222211221 133333222222 1 2367888885443
No 314
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.44 E-value=0.00015 Score=74.79 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||||..|+++|+.|+++ |.+|+|||+++...+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r--G~~V~LlEk~d~~~G 43 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR--GLRCILVERHDIATG 43 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc--CCeEEEEECCCCCCC
Confidence 58999999999999999999998 999999999876543
No 315
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.44 E-value=0.00014 Score=73.90 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||||||+|++|++||..+++. |.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~--G~~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREA--GASVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 58999999999999999999998 89999999986
No 316
>PLN02463 lycopene beta cyclase
Probab=97.43 E-value=0.00073 Score=67.70 Aligned_cols=130 Identities=13% Similarity=0.222 Sum_probs=72.5
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc-ccccCCcchhhhHHHhhccCCCChhhhhh---hcccccCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS-ATFLDPGAAEFFQDSINKTNTAKPETIFK---RMRYNTGGEKG 209 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~-~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~ 209 (454)
-.++|||||+.|+.+|..++ |.+|.++++.+... +. .... ..+.+.+... ...+.. ...+.......
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~--~~g~---w~~~l~~lgl--~~~l~~~w~~~~v~~~~~~~ 101 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPN--NYGV---WVDEFEALGL--LDCLDTTWPGAVVYIDDGKK 101 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhcc--ccch---HHHHHHHCCc--HHHHHhhCCCcEEEEeCCCC
Confidence 37999999999999998886 99999999865321 11 0011 1111111000 000000 00011111001
Q ss_pred CCCCCccc--cc--c--ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 210 PSLGPDWH--TQ--V--NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 210 ~~l~~~~~--~~--~--~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
..+...+. .+ + .+.+.+.+.|++++. ..|++++..++ ...|.+++|.++++|+||.|+|..+.
T Consensus 102 ~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~---~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 102 KDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEES---KSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCC---eEEEEECCCCEEEcCEEEECcCCCcC
Confidence 11111111 01 0 123333557999974 58888887653 46788899989999999999999764
No 317
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.43 E-value=0.00045 Score=68.29 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=75.2
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc--ccCCc---chhhhHHHhhccCCCCh---hhhhhhcccccC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT--FLDPG---AAEFFQDSINKTNTAKP---ETIFKRMRYNTG 205 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~--~~d~~---~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~ 205 (454)
-+|+|||||+.|+-+|..|. |.+|+++++.+..... ..++. +.....+.+.+....+. ........+.+.
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 47999999999999999986 9999999988764321 00110 11111122221100000 000000000000
Q ss_pred CCCCCCC--------CCcc----ccc-c--ccccCccCCc-eEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEE
Q psy1545 206 GEKGPSL--------GPDW----HTQ-V--NLHGSSRDTK-ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269 (454)
Q Consensus 206 ~~~~~~l--------~~~~----~~~-~--~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~ 269 (454)
......+ .+.. ... + .+.+.+++.| ++++ ++.+++++..++ .+.+.+++|.++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~---~~~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPD---AATLTLADGQVLRADLVVG 161 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCC---eEEEEECCCCEEEeeEEEE
Confidence 0000000 0100 000 0 1233345566 9999 889999876553 4668888888899999999
Q ss_pred eeccCcCc
Q psy1545 270 AIGVVPNS 277 (454)
Q Consensus 270 a~G~~p~~ 277 (454)
|.|.....
T Consensus 162 adG~~S~v 169 (388)
T PRK07608 162 ADGAHSWV 169 (388)
T ss_pred eCCCCchH
Confidence 99997654
No 318
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.42 E-value=0.00078 Score=67.48 Aligned_cols=135 Identities=13% Similarity=0.187 Sum_probs=71.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc-----cCCcchhhhHHHhhccCCCChhhhh--hhcccccCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF-----LDPGAAEFFQDSINKTNTAKPETIF--KRMRYNTGG 206 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~-----~d~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~ 206 (454)
-.|+|||||+.|+-+|..|+ |.+|.++++.+..-.+. +.....+.+...+... ....... ....+....
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~ 83 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADS--APVERLITHEKLAFMTEK 83 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhc--CcccceeeeeeEEEEcCC
Confidence 47999999999999999886 99999999876543211 1111111111111110 0000000 000000000
Q ss_pred C-----C-----CCCCCCcc--c-cccc--cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEee
Q psy1545 207 E-----K-----GPSLGPDW--H-TQVN--LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAI 271 (454)
Q Consensus 207 ~-----~-----~~~l~~~~--~-~~~~--~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~ 271 (454)
. . ...-...+ . ..+. +.+..++.|++++.++.|+++..+++ .+.....+|.++.+|.||.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g---~v~~v~~~g~~i~A~~VI~A~ 160 (428)
T PRK10157 84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDG---KVVGVEADGDVIEAKTVILAD 160 (428)
T ss_pred CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCC---EEEEEEcCCcEEECCEEEEEe
Confidence 0 0 00000001 0 0000 23334568999999999999876542 232334567789999999999
Q ss_pred ccCc
Q psy1545 272 GVVP 275 (454)
Q Consensus 272 G~~p 275 (454)
|...
T Consensus 161 G~~s 164 (428)
T PRK10157 161 GVNS 164 (428)
T ss_pred CCCH
Confidence 9854
No 319
>PRK07121 hypothetical protein; Validated
Probab=97.41 E-value=0.00018 Score=73.56 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=33.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||+|.||++||.++++. |.+|+|+|+.+..+
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~--G~~VillEK~~~~g 56 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAA--GARVLVLERAAGAG 56 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCCCC
Confidence 47999999999999999999998 89999999987643
No 320
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.41 E-value=0.00092 Score=66.47 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=41.9
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
+.+++.|++++.++++++++.+++ .+.+.+++|+++.+|+||.|.|..+..
T Consensus 119 ~~~~~~gv~v~~~~~v~~i~~~~~---~v~v~~~~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 119 KRAEALGIDLREATSVTDFETRDE---GVTVTLSDGSVLEARLLVAADGARSKL 169 (403)
T ss_pred HHHHhCCCEEEcCCEEEEEEEcCC---EEEEEECCCCEEEeCEEEEcCCCChHH
Confidence 444567999999999999986653 467888888899999999999998754
No 321
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.41 E-value=0.00014 Score=74.69 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=40.7
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+.+++.|+++++++.|++|..++ +..+.|++++|+++.+|.||++++...
T Consensus 226 ~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 226 AKLAEDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHH
Confidence 344467899999999999998655 235678888998899999999988643
No 322
>KOG1276|consensus
Probab=97.40 E-value=0.0002 Score=68.47 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=37.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
.++|+|+|||.+||++|++|+++.++..|+|+|+.+..++..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwi 52 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWI 52 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccccee
Confidence 478999999999999999999998888999999999877643
No 323
>PRK12831 putative oxidoreductase; Provisional
Probab=97.39 E-value=0.00053 Score=69.32 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=30.8
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~ 175 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEP 175 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 3789999999999999999986 9999999986643
No 324
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.38 E-value=0.00045 Score=68.18 Aligned_cols=48 Identities=21% Similarity=0.305 Sum_probs=39.4
Q ss_pred ccC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 226 SRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 226 l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+.+ .|++++.++++++++.+++ .+.+.+++|+++.+|+||.|.|....
T Consensus 115 ~~~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 115 LALLTNIQLYCPARYKEIIRNQD---YVRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHhCCCcEEEcCCeEEEEEEcCC---eEEEEECCCCEEEeeEEEEecCCChH
Confidence 344 4999999999999986553 46778888888999999999998754
No 325
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.38 E-value=0.00043 Score=68.33 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=40.5
Q ss_pred CccCCc-eEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 225 SSRDTK-ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 225 ~l~~~g-v~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.+++.| ++++.++.|++++..++ .+.+.+++|+++.+|+||.|.|.....
T Consensus 115 ~~~~~~~~~v~~~~~v~~i~~~~~---~~~v~~~~g~~~~~~~vi~adG~~S~v 165 (385)
T TIGR01988 115 RLQEYPNVTLLCPARVVELPRHSD---HVELTLDDGQQLRARLLVGADGANSKV 165 (385)
T ss_pred HHHhCCCcEEecCCeEEEEEecCC---eeEEEECCCCEEEeeEEEEeCCCCCHH
Confidence 344556 99999999999987653 467888899889999999999987654
No 326
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.38 E-value=0.00029 Score=71.26 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=31.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++++|||+|+.|+.+|..++ |.+|+++++.+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 3689999999999999999886 9999999987754
No 327
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.38 E-value=0.001 Score=68.92 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=65.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 213 (454)
-.++|||||+.|+.+|..+. |.+|+++++.. +-....... .+.. .......-+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~-------~i~~-----------------~pg~~~~~~ 59 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITS-------EVVN-----------------YPGILNTTG 59 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEecc-------cccc-----------------CCCCcCCCH
Confidence 47999999999999999886 99999999753 211100000 0000 000000000
Q ss_pred CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 214 PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 214 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++... +.+.+++.|++++ ++.+..+...++ ...+...++ ++.+|.+|+|||.+|...
T Consensus 60 ~~l~~~--l~~~~~~~gv~~~-~~~V~~i~~~~~---~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 60 PELMQE--MRQQAQDFGVKFL-QAEVLDVDFDGD---IKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred HHHHHH--HHHHHHHcCCEEe-ccEEEEEEecCC---EEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 111111 1222344688885 567888876542 345666665 588999999999998764
No 328
>PLN02576 protoporphyrinogen oxidase
Probab=97.37 E-value=0.00019 Score=73.43 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+||+|||||++||+||+.|.+.. |.+|+|+|+++.+++.
T Consensus 13 ~~v~IIGaGisGL~aA~~L~~~~-g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 13 KDVAVVGAGVSGLAAAYALASKH-GVNVLVTEARDRVGGN 51 (496)
T ss_pred CCEEEECcCHHHHHHHHHHHHhc-CCCEEEEecCCCCCCc
Confidence 68999999999999999999863 6899999999887754
No 329
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.37 E-value=0.00019 Score=73.45 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=33.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||+|.||++||..+++. |.+|+|||+.+..+
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~--Ga~VivlEK~~~~G 97 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDA--GMNPVILEKMPVAG 97 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCC
Confidence 47999999999999999999998 89999999987643
No 330
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.36 E-value=0.00018 Score=73.08 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||||+.|+++|++|+++.++.+|+|+|+++..
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 47999999999999999999998788999999998643
No 331
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.36 E-value=0.0015 Score=64.59 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=40.6
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.|++++.++++++++.+++ .+.+.+++|.++.+|+||.|.|..+...
T Consensus 124 ~~i~i~~~~~v~~~~~~~~---~~~v~~~~g~~~~~~lvIgADG~~S~vR 170 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAE---GNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred CCeEEECCCceeEEEEcCC---eEEEEECCCCEEEeeEEEEecCCCchhH
Confidence 5799999999999987653 4678889999999999999999988654
No 332
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.35 E-value=0.0002 Score=74.56 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
-+.||||||+|.||++||.++++. |.+|+|||+.+..
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEA--GVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHc--CCcEEEEEccCCC
Confidence 057999999999999999999998 8999999987654
No 333
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.35 E-value=0.00013 Score=71.05 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=51.2
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcCcccccCCCCcee-cCCCceEec-cccc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPNSNIQVHGTPFEL-APDCGIGVN-ELMQ 301 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~~~~~~~~~~l~~-~~~g~i~vd-~~~~ 301 (454)
.|++++++++|+.++..+++ .+.|... +| .++.++.|++..|-..-. +++..|++- ..-|+..|. .+++
T Consensus 195 ~~~~~~~~~eV~~i~r~~dg--~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~--LLqksgi~e~~gyggfPVsG~fl~ 270 (488)
T PF06039_consen 195 KGFELHLNHEVTDIKRNGDG--RWEVKVKDLKTGEKREVRAKFVFVGAGGGALP--LLQKSGIPEGKGYGGFPVSGQFLR 270 (488)
T ss_pred CCcEEEecCEeCeeEECCCC--CEEEEEEecCCCCeEEEECCEEEECCchHhHH--HHHHcCChhhcccCCCcccceEEe
Confidence 59999999999999987752 3555543 22 679999999999887543 777777642 223445555 6677
Q ss_pred cccC
Q psy1545 302 TSIS 305 (454)
Q Consensus 302 t~~~ 305 (454)
++.|
T Consensus 271 ~~n~ 274 (488)
T PF06039_consen 271 CKNP 274 (488)
T ss_pred cCCH
Confidence 6554
No 334
>PRK08244 hypothetical protein; Provisional
Probab=97.34 E-value=0.001 Score=68.03 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=74.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHH-----HhhccCCCChhhhhhhccccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQD-----SINKTNTAKPETIFKRMRYNT 204 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 204 (454)
..|+|||||+.|+-+|..|. |.+|+++++.+..... .+.+...+.+.+ .+.+.. .... ...+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~----~~~~-~~~~~~ 77 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKG----RKLP-SGHFAG 77 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhc----cccc-ceEEec
Confidence 36999999999999999996 9999999987654321 112222222211 111100 0000 000000
Q ss_pred C---CCCCC-CCCCcc---ccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC-cEEecCEEEEe
Q psy1545 205 G---GEKGP-SLGPDW---HTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG-HTHACDIVVSA 270 (454)
Q Consensus 205 ~---~~~~~-~l~~~~---~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g-~~~~~D~vi~a 270 (454)
. ..+.. .....+ -.+-. +.+.+++.|++++.++++++++.+++ .+.+.+. +| +++.+|+||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~---~v~v~~~~~~g~~~i~a~~vVgA 154 (493)
T PRK08244 78 LDTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD---GVEVVVRGPDGLRTLTSSYVVGA 154 (493)
T ss_pred ccccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC---eEEEEEEeCCccEEEEeCEEEEC
Confidence 0 00000 000000 00101 23334567999999999999986653 3445543 45 57999999999
Q ss_pred eccCcCc
Q psy1545 271 IGVVPNS 277 (454)
Q Consensus 271 ~G~~p~~ 277 (454)
.|.++..
T Consensus 155 DG~~S~v 161 (493)
T PRK08244 155 DGAGSIV 161 (493)
T ss_pred CCCChHH
Confidence 9998754
No 335
>PRK07190 hypothetical protein; Provisional
Probab=97.34 E-value=0.0009 Score=68.09 Aligned_cols=134 Identities=15% Similarity=0.113 Sum_probs=75.7
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCcchhhhHH-----HhhccCCCChhhhhhh-----
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPGAAEFFQD-----SINKTNTAKPETIFKR----- 199 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~~~~~~~~-----~l~~~~~~~~~~~~~~----- 199 (454)
..|+|||+|++|+-+|..|. |.+|.++++.+...... +.+...+.+.. .+... .......
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~----~~~~~~~~~~~~ 81 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPL----GKPCNTSSVWAN 81 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhh----CccceeEEEecC
Confidence 47999999999999999886 99999999887543210 12221111111 11000 0000000
Q ss_pred ccccc-----CCCCCCCCCCc--ccccc----ccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEE
Q psy1545 200 MRYNT-----GGEKGPSLGPD--WHTQV----NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268 (454)
Q Consensus 200 ~~~~~-----~~~~~~~l~~~--~~~~~----~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi 268 (454)
-.+.. .........+. ...+. .+.+.+++.|++++.++++++++.+++ .+.+.+.+|+++.+++||
T Consensus 82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~---~v~v~~~~g~~v~a~~vV 158 (487)
T PRK07190 82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQA---GCLTTLSNGERIQSRYVI 158 (487)
T ss_pred CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC---eeEEEECCCcEEEeCEEE
Confidence 00000 00000000000 00110 123344667999999999999987653 355667788889999999
Q ss_pred EeeccCcC
Q psy1545 269 SAIGVVPN 276 (454)
Q Consensus 269 ~a~G~~p~ 276 (454)
.|.|.+..
T Consensus 159 gADG~~S~ 166 (487)
T PRK07190 159 GADGSRSF 166 (487)
T ss_pred ECCCCCHH
Confidence 99998763
No 336
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.33 E-value=0.0015 Score=65.96 Aligned_cols=91 Identities=14% Similarity=0.120 Sum_probs=59.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+|+|||||..|+-+|..|+++ |.+|+++++..... .+ ......+.+.+ +|+++.. .++.+.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~--G~~Vtlv~~~~~~~-------~~-------~~~~~~~~l~~~GV~~~~~~~~~~i~ 336 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL--GAEVHCLYRRTRED-------MT-------ARVEEIAHAEEEGVKFHFLCQPVEII 336 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCEEEEEeecCccc-------CC-------CCHHHHHHHHhCCCEEEeccCcEEEE
Confidence 4799999999999999999998 88999998875310 00 01112234444 8888633 555553
Q ss_pred Cc--cc--EEEec---------cC-----------cEEEecEEEEecCCCCCC
Q psy1545 81 PR--VN--CVITE---------KQ-----------NRIKYKTLCICTGASPRK 109 (454)
Q Consensus 81 ~~--~~--~v~~~---------~g-----------~~i~~d~lviAtG~~p~~ 109 (454)
.+ .+ .|.+. +| ..+.+|.||+|+|..|..
T Consensus 337 ~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~ 389 (449)
T TIGR01316 337 GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP 389 (449)
T ss_pred EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc
Confidence 21 11 12221 12 269999999999998764
No 337
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.31 E-value=0.00023 Score=67.54 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=31.0
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
||+||||+|++|..+|.+|++. ++.+|+|+|+.+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~-~~~~VlvlEaG~~~~ 37 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA-GNKKVLVLEAGPRYP 37 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS-TTS-EEEEESSBSCT
T ss_pred CCEEEECcCHHHHHHHHHHhhC-CCCcEEEEEccccCc
Confidence 7999999999999999999997 347999999998654
No 338
>PTZ00367 squalene epoxidase; Provisional
Probab=97.30 E-value=0.00025 Score=73.05 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 33 ~~dViIVGaGiaGlalA~aLar~--G~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALSKQ--GRKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHHhc--CCEEEEEcccc
Confidence 47999999999999999999998 99999999976
No 339
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.30 E-value=0.00026 Score=71.30 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIVK 40 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~~ 40 (454)
||||||||.||++||..+++. | .+|+|+|+.+..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~--G~~~V~vlEk~~~~g 36 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA--GAANVVLLEKMPVIG 36 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc--CCccEEEEecCCCCC
Confidence 799999999999999999998 8 8999999987653
No 340
>PLN02661 Putative thiazole synthesis
Probab=97.30 E-value=0.0026 Score=60.84 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=99.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC-
Q psy1545 135 AKKIVVIGNGGIATELVHELS---NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP- 210 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 210 (454)
.-.++|||+|..|+-+|..++ +.+|++++++..+-....... ..+...+.+ ........+..+.+... ..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg--~l~~~~vv~---~~a~e~LeElGV~fd~~-dgy 165 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGG--QLFSAMVVR---KPAHLFLDELGVPYDEQ-ENY 165 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCc--ccccccccc---cHHHHHHHHcCCCcccC-CCe
Confidence 458999999999999999986 689999998765432111110 000000000 00001111222222111 00
Q ss_pred CCC---CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEe------cC---C-----cEEecCEEEEeecc
Q psy1545 211 SLG---PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL------TN---G-----HTHACDIVVSAIGV 273 (454)
Q Consensus 211 ~l~---~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~------~~---g-----~~~~~D~vi~a~G~ 273 (454)
... .++...+ +.+.+++.||+++.++.+.++..+++ ....+.. .+ + ..+.++.||+|||.
T Consensus 166 ~vv~ha~e~~stL-i~ka~~~~gVkI~~~t~V~DLI~~~g--rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 166 VVIKHAALFTSTI-MSKLLARPNVKLFNAVAAEDLIVKGD--RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred eEecchHHHHHHH-HHHHHhcCCCEEEeCeEeeeEEecCC--EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 000 0000111 12233557999999999999876542 3333432 11 1 26899999999996
Q ss_pred CcCcc----cccCCCCce--ecCCCceEecc--c-----cccccCceeecCcccccCCccccchhhccChHHH-HHHHHH
Q psy1545 274 VPNSN----IQVHGTPFE--LAPDCGIGVNE--L-----MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA-KHMGTY 339 (454)
Q Consensus 274 ~p~~~----~~~~~~~l~--~~~~g~i~vd~--~-----~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A-~~~g~~ 339 (454)
.+... ..+...++. +..-....++. . -+--+|++|++|=.+..- ...+ .+.-..-+ ...|+.
T Consensus 243 ~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~-~g~~---rmgp~fg~m~~sg~k 318 (357)
T PLN02661 243 DGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEI-DGSP---RMGPTFGAMMISGQK 318 (357)
T ss_pred CCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhh-cCCC---ccCchhHhHHhhhHH
Confidence 65321 011111110 00011122221 1 111379999999766431 1111 11112223 466888
Q ss_pred HHhhhcCCCC
Q psy1545 340 AAKCMVGAVK 349 (454)
Q Consensus 340 aa~~i~~~~~ 349 (454)
||+-++.++.
T Consensus 319 ~a~~~~~~l~ 328 (357)
T PLN02661 319 AAHLALKALG 328 (357)
T ss_pred HHHHHHHHHc
Confidence 9988887664
No 341
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.30 E-value=0.0002 Score=71.36 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=79.0
Q ss_pred ccEEEECCCH-HHHHHHHHHhhcCCCCeEEEECCCCcccccccccccccccc--ccchhhhHHHHHhc--CcEEEcceEE
Q psy1545 3 FTYLIIGGGI-AGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLS--DITVEETDANKFEG--LCTVIVDTVA 77 (454)
Q Consensus 3 ~dvvIIGgG~-aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~i~~~~~~v~ 77 (454)
++.+++|.++ ++...|.+|... +. .. .. .|......+.... .........+.+.+ ...-+.++|.
T Consensus 6 ~~e~~~~~~~~~a~~~a~rCl~C--~~-~C-~~------~cp~~~~IP~~~~lv~~g~~~~a~~~i~~tn~~p~~~gRvc 75 (457)
T COG0493 6 FREAVVGSGPEAAIYEAARCLDC--GD-PC-IT------GCPVHNDIPEPIGLVREGVDHEAIKLIHKTNNLPAITGRVC 75 (457)
T ss_pred ceeeecCCCHHHHHHHHHHHHcC--CC-cc-cc------CCcCCCcCCCHHHHHhcCCcHHHHHHHHHhCCCccccCccC
Confidence 6789999999 888888888876 21 11 11 1222211111110 01111112222222 3333455555
Q ss_pred EEe--CcccEEEeccCcEEEecEEEEecCCCCCCC-CCCCceeeeeccchHHHHHHHhhcCCeEEEEcCchhHHHHHHHh
Q psy1545 78 AID--PRVNCVITEKQNRIKYKTLCICTGASPRKI-WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL 154 (454)
Q Consensus 78 ~i~--~~~~~v~~~~g~~i~~d~lviAtG~~p~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~vvVvG~G~~g~e~a~~l 154 (454)
... -....+...++..+.++.|..+.|...... .+++..... ..+++|.|||+|+-|+.+|..|
T Consensus 76 p~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~-------------~tg~~VaviGaGPAGl~~a~~L 142 (457)
T COG0493 76 PLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGS-------------RTGKKVAVIGAGPAGLAAADDL 142 (457)
T ss_pred CCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCC-------------CCCCEEEEECCCchHhhhHHHH
Confidence 443 223333332345677888887777543211 111000000 1278999999999999999999
Q ss_pred c--CCcEEEEEeCCCccc
Q psy1545 155 S--NVDIVWVVKDKHISA 170 (454)
Q Consensus 155 ~--g~~V~~i~~~~~~~~ 170 (454)
+ |+.||++++.+..-.
T Consensus 143 ~~~G~~Vtv~e~~~~~GG 160 (457)
T COG0493 143 SRAGHDVTVFERVALDGG 160 (457)
T ss_pred HhCCCeEEEeCCcCCCce
Confidence 7 999999988765443
No 342
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.29 E-value=0.00024 Score=74.42 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||||||+|.||++||..+++. |.+|+|||+.+..
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~--G~~V~lieK~~~~ 43 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARER--GLRVAVVCKSLFG 43 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHC--CCCEEEEeccCCC
Confidence 57999999999999999999998 8999999998654
No 343
>PLN02568 polyamine oxidase
Probab=97.29 E-value=0.0003 Score=72.22 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC---CCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH---PGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~---~g~~v~lie~~~~~~~~~ 43 (454)
..||+|||||++|++||..|++.+ .+.+|+|+|+++.+++..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeE
Confidence 468999999999999999999872 138999999998887654
No 344
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.28 E-value=0.00027 Score=71.44 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=33.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+|+|||||++|++||+.|.+. |.+|+|+|+++.+++.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~--G~~v~vlE~~~~~GG~ 37 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA--GHTPIVLEARDVLGGK 37 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCCC
Confidence 589999999999999999998 8999999999887653
No 345
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.28 E-value=0.00089 Score=66.41 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=37.8
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+.+++.|+++++++.+.++...++ .+.+++ ++.++.+|.||+|+|...
T Consensus 112 ~~~l~~~gv~i~~~~~V~~i~~~~~---~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 112 LNELKELGVEILTNSKVKSIKKDDN---GFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHCCCEEEeCCEEEEEEecCC---eEEEEE-CCcEEEcCEEEECCCCcc
Confidence 3445678999999999999976542 455665 456799999999999754
No 346
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.28 E-value=0.0003 Score=70.19 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=41.4
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
+...|.++++++.|.+|..+++ +....|++++|+++.++.||....+.|..
T Consensus 242 ~a~~Gg~~~L~~~V~~I~~~~~-g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~ 292 (443)
T PTZ00363 242 CAIYGGTYMLNTPVDEVVFDEN-GKVCGVKSEGGEVAKCKLVICDPSYFPDK 292 (443)
T ss_pred HHHcCcEEEcCCeEEEEEEcCC-CeEEEEEECCCcEEECCEEEECccccccc
Confidence 3567999999999999976542 34577889999999999999988887753
No 347
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.24 E-value=0.00064 Score=66.00 Aligned_cols=140 Identities=16% Similarity=0.237 Sum_probs=71.4
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh-------cccccC--
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR-------MRYNTG-- 205 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~-- 205 (454)
+|+|||||+.|+-+|..|+ |.+|+++++.+.+........+.....+.|.... -........ ..+...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lg-l~~~~~~~~~~~~~~~~~~~~~~~ 81 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLG-LLDEILARGSPHEVMRIFFYDGIS 81 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTT-EHHHHHHHSEEECEEEEEEEEETT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccccccccccccccccccccccccc-chhhhhhhcccccceeeEeecccC
Confidence 6899999999999999997 9999999998776542111111111122221100 000000000 000000
Q ss_pred ------------CCCC-CCCCCcc--ccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEec-CC--cEEe
Q psy1545 206 ------------GEKG-PSLGPDW--HTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NG--HTHA 263 (454)
Q Consensus 206 ------------~~~~-~~l~~~~--~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g--~~~~ 263 (454)
..+. ..-.+.. ..+.. +.+.+++.|++++.++++..++.+.+ +....+... +| ++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~-~~~~~~~~~~~g~~~~i~ 160 (356)
T PF01494_consen 82 DSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD-GVTVVVRDGEDGEEETIE 160 (356)
T ss_dssp TSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT-EEEEEEEETCTCEEEEEE
T ss_pred CccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc-ccccccccccCCceeEEE
Confidence 0000 0000110 01111 23444667899999999999887654 212223332 34 3789
Q ss_pred cCEEEEeeccCcCcc
Q psy1545 264 CDIVVSAIGVVPNSN 278 (454)
Q Consensus 264 ~D~vi~a~G~~p~~~ 278 (454)
+|+||-|-|.+....
T Consensus 161 adlvVgADG~~S~vR 175 (356)
T PF01494_consen 161 ADLVVGADGAHSKVR 175 (356)
T ss_dssp ESEEEE-SGTT-HHH
T ss_pred EeeeecccCcccchh
Confidence 999999999987654
No 348
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.23 E-value=0.00036 Score=72.21 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
++||||||+|.||++||..+++. |.+|+|||+.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~--G~~VivlEK~~ 37 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADA--GKRVLLLDQEN 37 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 58999999999999999999998 89999999988
No 349
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.23 E-value=0.00035 Score=73.13 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=34.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+||||||||..|.++|+.|+++ |.+|+|||+++...+.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~r--Gl~V~LvE~~d~a~Gt 109 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATR--GLRVGLVEREDFSSGT 109 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhC--CCEEEEEeccccCCCc
Confidence 7999999999999999999998 9999999999766543
No 350
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.23 E-value=0.00034 Score=71.69 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||+| +|++||.++++. |.+|+|||+.+..+
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~--G~~V~vlEk~~~~G 42 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAARE--GLSVALVEATDKFG 42 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence 4799999999 999999999998 89999999987644
No 351
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.22 E-value=0.00054 Score=69.67 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=30.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+++|..|+ |.+|+++++.+++
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 579999999999999999987 9999999987764
No 352
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.21 E-value=0.00075 Score=68.03 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=31.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS----NVDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~ 169 (454)
+++|+|||+|+.|+.+|..|+ |.+|+++++.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 789999999999999999884 89999999987543
No 353
>PRK08013 oxidoreductase; Provisional
Probab=97.21 E-value=0.0015 Score=64.92 Aligned_cols=140 Identities=14% Similarity=0.224 Sum_probs=77.1
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----------ccCCcchhhhHHH-hhccCCCChhhhhhhccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----------FLDPGAAEFFQDS-INKTNTAKPETIFKRMRY 202 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----------~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~ 202 (454)
.+|+|||||+.|+-+|..|+ |.+|+++++.+..... .+.+...+.+.+. +.+...+..........+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 47999999999999999997 9999999988753210 0122212222111 000000000000000110
Q ss_pred ccCCC-----CC-CCCC-Ccc---ccccc----cccCccC-CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEE
Q psy1545 203 NTGGE-----KG-PSLG-PDW---HTQVN----LHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIV 267 (454)
Q Consensus 203 ~~~~~-----~~-~~l~-~~~---~~~~~----~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~v 267 (454)
..... +. ...+ +.. -.+-. +.+.+.+ .||+++.++++++++.+++ .+.+.+.+|+++.+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~---~v~v~~~~g~~i~a~lv 160 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN---EAFLTLKDGSMLTARLV 160 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC---eEEEEEcCCCEEEeeEE
Confidence 00000 00 0001 000 00100 2222333 4899999999999977653 46788889999999999
Q ss_pred EEeeccCcCcc
Q psy1545 268 VSAIGVVPNSN 278 (454)
Q Consensus 268 i~a~G~~p~~~ 278 (454)
|-|-|......
T Consensus 161 VgADG~~S~vR 171 (400)
T PRK08013 161 VGADGANSWLR 171 (400)
T ss_pred EEeCCCCcHHH
Confidence 99999987553
No 354
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.21 E-value=0.00039 Score=70.23 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.7
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
+||||||||.+|+++|..|++..|+.+|+|+|+.+.+
T Consensus 7 ~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~ 43 (497)
T PRK13339 7 KDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP 43 (497)
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence 6999999999999999999999889999999994443
No 355
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.20 E-value=0.00038 Score=72.54 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||||||||.||++||..+++. |.+|+|||+...
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~vleK~~~ 46 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARA--GLSVAVLSKVFP 46 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccCC
Confidence 47999999999999999999997 889999999753
No 356
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.20 E-value=0.00068 Score=67.50 Aligned_cols=46 Identities=24% Similarity=0.347 Sum_probs=39.1
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.||+++.++++++++.+++ .+.+.+++|+++.+|+||.|.|.....
T Consensus 125 ~~v~v~~~~~v~~i~~~~~---~~~v~~~~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGES---EAWLTLDNGQALTAKLVVGADGANSWL 170 (405)
T ss_pred CCeEEEcCCeeEEEEeeCC---eEEEEECCCCEEEeCEEEEeCCCCChh
Confidence 5799999999999976553 467888899999999999999987654
No 357
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.20 E-value=0.00037 Score=72.87 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||||.||++||.++++. |.+|+|+||....
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~lveK~~~~ 64 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVEL--GYKTACISKLFPT 64 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCcEEEEeccCCC
Confidence 47999999999999999999997 8999999998654
No 358
>PLN02697 lycopene epsilon cyclase
Probab=97.18 E-value=0.0016 Score=66.47 Aligned_cols=129 Identities=19% Similarity=0.262 Sum_probs=69.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhh---hcccccCCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFK---RMRYNTGGEKGP 210 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 210 (454)
-.|+|||+|+.|+.+|..++ |.+|.++++...+...+ .++....+.+. . ...+.. ...+.+......
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~---GvW~~~l~~lg---l--~~~i~~~w~~~~v~~~~~~~~ 180 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY---GVWEDEFKDLG---L--EDCIEHVWRDTIVYLDDDKPI 180 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCcc---ccchhHHHhcC---c--HHHHHhhcCCcEEEecCCcee
Confidence 47999999999999998886 99999998754432211 11111011100 0 000000 000111000000
Q ss_pred CCCCcc---ccc---cccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 211 SLGPDW---HTQ---VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 211 ~l~~~~---~~~---~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
.+...+ ... ..+.+.+.+.|+++ .++.|+++...++ ....+.+.+|.++.++.||.|+|..+
T Consensus 181 ~~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~--~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 181 MIGRAYGRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASD--GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred eccCcccEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCC--cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 011111 110 01223335579998 5678999876543 12334567788899999999999976
No 359
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.17 E-value=0.0004 Score=72.29 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+.+|+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 81 ~~~VlIVGgGIaGLalAlaL~r~--Gi~V~V~Er~~ 114 (668)
T PLN02927 81 KSRVLVAGGGIGGLVFALAAKKK--GFDVLVFEKDL 114 (668)
T ss_pred CCCEEEECCCHHHHHHHHHHHhc--CCeEEEEeccc
Confidence 36899999999999999999998 99999999975
No 360
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.16 E-value=0.00041 Score=74.53 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=33.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|+|||||+||+++|..|++.++|++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 379999999999999999999877899999999875
No 361
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.15 E-value=0.003 Score=62.77 Aligned_cols=139 Identities=14% Similarity=0.147 Sum_probs=74.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCcchhhhHHHh-hccCCCChhhhhhhcccccCCC-
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPGAAEFFQDSI-NKTNTAKPETIFKRMRYNTGGE- 207 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~- 207 (454)
++|+|||||+.|+-+|..|. |.+|+++++.+.+.... +.+...+.+.+.- .+.... .........+.....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~-~~~~~~~~~~~~g~~~ 81 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSG-TGVTPKALYLMDGRKA 81 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhh-cccCcceEEEecCCCc
Confidence 78999999999999999996 99999999887543211 1222222222110 000000 000000000000000
Q ss_pred -------C----CCCCCCccc--cccc----cccCcc-CCceEEEeCceEEEEEcCCCCccceEEEe---cCCcEEecCE
Q psy1545 208 -------K----GPSLGPDWH--TQVN----LHGSSR-DTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGHTHACDI 266 (454)
Q Consensus 208 -------~----~~~l~~~~~--~~~~----~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~~~~~D~ 266 (454)
. ....+..+. .+-. +.+.+. ..++++++++++++++.+++ .+.+.+ ++++++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~---~v~v~~~~~~~~~~~~adl 158 (400)
T PRK06475 82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGN---SITATIIRTNSVETVSAAY 158 (400)
T ss_pred ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCC---ceEEEEEeCCCCcEEecCE
Confidence 0 000010110 1101 222222 24899999999999987553 355555 3346799999
Q ss_pred EEEeeccCcCcc
Q psy1545 267 VVSAIGVVPNSN 278 (454)
Q Consensus 267 vi~a~G~~p~~~ 278 (454)
||-|-|.+....
T Consensus 159 vIgADG~~S~vR 170 (400)
T PRK06475 159 LIACDGVWSMLR 170 (400)
T ss_pred EEECCCccHhHH
Confidence 999999987554
No 362
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.15 E-value=0.00044 Score=72.43 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||+|||+|.||++||.++++. |.+|+|+||....
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~--G~~VilveK~~~~ 85 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLFPT 85 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhc--CCcEEEEEcCCCC
Confidence 36999999999999999999997 8999999998653
No 363
>KOG2404|consensus
Probab=97.14 E-value=0.0014 Score=60.52 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
.+||||+|.||++|+..+... +..|+|+|++...++
T Consensus 11 pvvVIGgGLAGLsasn~iin~--gg~V~llek~~s~GG 46 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK--GGIVILLEKAGSIGG 46 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc--CCeEEEEeccCCcCC
Confidence 499999999999999999987 667999999987664
No 364
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.14 E-value=0.001 Score=71.66 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=29.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
+++++|||+|+.|+.+|..|+ |.+|+++++.+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 679999999999999999986 999999998654
No 365
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.14 E-value=0.0038 Score=61.81 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=39.6
Q ss_pred cCC-ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 227 RDT-KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 227 ~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++. |++++.++.++++...++ .+.+.+++|+++.+|+||.|.|.....
T Consensus 123 ~~~~gv~i~~~~~v~~i~~~~~---~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 123 EAHPNVTLRCPASLQALQRDDD---GWELTLADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred HcCCCcEEEcCCeeEEEEEcCC---eEEEEECCCCEEEeCEEEEeCCCCchh
Confidence 344 999999999999976553 467788888889999999999998754
No 366
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.13 E-value=0.0016 Score=66.43 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=55.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEeC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAIDP 81 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~~ 81 (454)
.+++|||+|.+|+++|..|+++ |.+|+++|+.+.. ......+.+.+ +++++.+....
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~~~-----------------~~~~~~~~l~~~gv~~~~~~~~~--- 74 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGDDE-----------------RHRALAAILEALGATVRLGPGPT--- 74 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchh-----------------hhHHHHHHHHHcCCEEEECCCcc---
Confidence 4699999999999999999998 8899999976421 01112233444 78776442111
Q ss_pred cccEEEeccCcEEEecEEEEecCCCCCCCCCC
Q psy1545 82 RVNCVITEKQNRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 82 ~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~~ 113 (454)
....+|.+|+++|..|..|...
T Consensus 75 ----------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 ----------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred ----------ccCCCCEEEECCCcCCCCHHHH
Confidence 1245899999999998877543
No 367
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.13 E-value=0.00052 Score=71.02 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=34.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||||||+|.+|++||..+++. |.+|+|||+.+..++
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~--G~~v~liEk~~~~gG 43 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADS--GLEPLIVEKQDKVGG 43 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCc
Confidence 58999999999999999999998 899999999876543
No 368
>KOG1335|consensus
Probab=97.12 E-value=0.0015 Score=61.62 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=72.4
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEEe
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAID 80 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i~ 80 (454)
.+++|||||..||..+.-..++ |.+||++|-.+..... -+-++.....+.+.. ++.|..+ +|....
T Consensus 212 k~~~viG~G~IGLE~gsV~~rL--GseVT~VEf~~~i~~~----------mD~Eisk~~qr~L~kQgikF~l~tkv~~a~ 279 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRL--GSEVTVVEFLDQIGGV----------MDGEISKAFQRVLQKQGIKFKLGTKVTSAT 279 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhc--CCeEEEEEehhhhccc----------cCHHHHHHHHHHHHhcCceeEeccEEEEee
Confidence 4689999999999999999999 9999999988766432 122333344445555 9999755 888887
Q ss_pred Cccc---EEEecc---C--cEEEecEEEEecCCCCCCCCCC
Q psy1545 81 PRVN---CVITEK---Q--NRIKYKTLCICTGASPRKIWYS 113 (454)
Q Consensus 81 ~~~~---~v~~~~---g--~~i~~d~lviAtG~~p~~~~~~ 113 (454)
++.. .|++++ + +++++|.|++|+|-+|+.-...
T Consensus 280 ~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLg 320 (506)
T KOG1335|consen 280 RNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLG 320 (506)
T ss_pred ccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCC
Confidence 6544 334332 2 4799999999999999875543
No 369
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.12 E-value=0.00046 Score=71.72 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=34.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||||||+|.||++||..+++. |.+|+|+|+.+..++
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~--G~~VivlEk~~~~gG 48 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAAR--GLDTLVVEKSAHFGG 48 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHC--CCcEEEEEcCCCCCc
Confidence 47999999999999999999998 899999999976543
No 370
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.018 Score=57.74 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=82.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCC-C
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG-P 210 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 210 (454)
-.+++|||+|++|+-+|..|. |.. +.++++++.+-..+...- -+.+.- ..+.... ...+. +.. .
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r-----y~~l~~---~~p~~~~-~~~~~---p~~~~ 75 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR-----YPGLRL---DSPKWLL-GFPFL---PFRWD 75 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc-----CCceEE---CCchhee-ccCCC---ccCCc
Confidence 468999999999999999996 777 999998875443211100 000000 0000000 00000 010 0
Q ss_pred CCCCcccc-ccccccCccCC--ceEEEeCceEEEEEcCCCCccceEEEecCCcE--EecCEEEEeeccCcCcccccCCCC
Q psy1545 211 SLGPDWHT-QVNLHGSSRDT--KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT--HACDIVVSAIGVVPNSNIQVHGTP 285 (454)
Q Consensus 211 ~l~~~~~~-~~~~~~~l~~~--gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~--~~~D~vi~a~G~~p~~~~~~~~~~ 285 (454)
..-+.... +-++.+.+++. -.++..++.|+.+..+++ +..+.|..+++.+ +.+|.||+|||.-.... +-.-.|
T Consensus 76 ~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~-~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G 153 (443)
T COG2072 76 EAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDED-TKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAG 153 (443)
T ss_pred ccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCC-CCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCC
Confidence 01111111 11122222222 234445555555555443 4478899988855 55999999999933221 112223
Q ss_pred ceecCCCceEeccc----cccccCceeecCcccc
Q psy1545 286 FELAPDCGIGVNEL----MQTSISNVYAAGDVCT 315 (454)
Q Consensus 286 l~~~~~g~i~vd~~----~~t~~~~Iya~GD~~~ 315 (454)
++. -.|.+.-... ..-.-++|-+||--++
T Consensus 154 ~~~-f~g~~~HS~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 154 LDE-FKGRILHSADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred ccC-CCceEEchhcCCCccccCCCeEEEECCCcc
Confidence 321 2343332211 2234577888886544
No 371
>PRK09897 hypothetical protein; Provisional
Probab=97.10 E-value=0.0026 Score=65.02 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=72.9
Q ss_pred CeEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCccccc-cCC-cchhh-hHHHhhcc----CCCChhhhhhhc----
Q psy1545 136 KKIVVIGNGGIATELVHELS----NVDIVWVVKDKHISATF-LDP-GAAEF-FQDSINKT----NTAKPETIFKRM---- 200 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~~-~d~-~~~~~-~~~~l~~~----~~~~~~~~~~~~---- 200 (454)
++|+|||+|+.|+-+|..|. ..+|++++++..+-.+. +.+ +.... +....... ...-..++....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999998885 45899999877654332 121 11111 11100000 000001111100
Q ss_pred ---ccccCCCCCCCCCCc-----cccc-cc-cccCccCCc--eEEEeCceEEEEEcCCCCccceEEEecC-CcEEecCEE
Q psy1545 201 ---RYNTGGEKGPSLGPD-----WHTQ-VN-LHGSSRDTK--ITIEYSCEVERIVDSEDDTCNAYVKLTN-GHTHACDIV 267 (454)
Q Consensus 201 ---~~~~~~~~~~~l~~~-----~~~~-~~-~~~~l~~~g--v~i~~~~~v~~i~~~~~~~~~~~v~~~~-g~~~~~D~v 267 (454)
.......-...+.|. +... +. +.+.+.+.| ++++.+++|+.++..++ .+.+.+++ |..+.+|.|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~---g~~V~t~~gg~~i~aD~V 158 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNA---GVMLATNQDLPSETFDLA 158 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCC---EEEEEECCCCeEEEcCEE
Confidence 000000001122222 1111 11 123334555 78889999999987653 46677655 477999999
Q ss_pred EEeeccCc
Q psy1545 268 VSAIGVVP 275 (454)
Q Consensus 268 i~a~G~~p 275 (454)
|+|+|..+
T Consensus 159 VLAtGh~~ 166 (534)
T PRK09897 159 VIATGHVW 166 (534)
T ss_pred EECCCCCC
Confidence 99999854
No 372
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.09 E-value=0.00054 Score=71.49 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++||||||||.||++||..+++. |.+|+|+||...
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~--G~~V~lveK~~~ 46 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEA--GLKTACITKVFP 46 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccCC
Confidence 37999999999999999999997 889999999753
No 373
>PLN02676 polyamine oxidase
Probab=97.09 E-value=0.00067 Score=68.99 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=36.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCC-eEEEECCCCcccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIVKAVTKT 45 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~-~v~lie~~~~~~~~~~~ 45 (454)
++||+|||||++|++||++|++. |. +|+|+|+++..++....
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~--g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEA--GIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc--CCCcEEEecCCCCCCCccee
Confidence 47899999999999999999998 76 69999999887765443
No 374
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.09 E-value=0.00067 Score=62.60 Aligned_cols=37 Identities=32% Similarity=0.572 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+|++|||+|.+|+..|..|+++ |.+|.|+|+.++.++
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~--gk~VLIvekR~HIGG 38 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL--GKRVLIVEKRNHIGG 38 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc--CCEEEEEeccccCCC
Confidence 7999999999999999999998 999999999998764
No 375
>KOG2853|consensus
Probab=97.08 E-value=0.0032 Score=58.59 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhc--CCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFL--HPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~--~~g~~v~lie~~~~ 38 (454)
.||+|||||..|.+.|+.|.++ ..|.+|+++|+.+.
T Consensus 87 ~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 87 CDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 5899999999999999999875 34689999999853
No 376
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.07 E-value=0.00056 Score=72.00 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+||||||||.||+.||..+++. |.+|+|+|+.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~--G~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQR--GLDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHc--CCCEEEEeCCCCC
Confidence 47999999999999999999997 8999999987653
No 377
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.07 E-value=0.00059 Score=69.25 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=33.8
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
+|+|||||++|+++|..|++. |.+|+|+|+++..++.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA--GHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCCCCce
Confidence 589999999999999999998 8999999999887653
No 378
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.06 E-value=0.0017 Score=64.34 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=78.1
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccC-CcchhhhHHHhhccCCCChhhhhhhcccccC-CCCCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLD-PGAAEFFQDSINKTNTAKPETIFKRMRYNTG-GEKGPS 211 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 211 (454)
-.|+|||+|+.|.-+|..|+ |.+|.++++++.+-.+... ..+.....+.+......+.........+.+. ......
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 36899999999999999997 8999999997765443222 2222222222221111000011111111111 000000
Q ss_pred C--CCccc----cccc-cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 212 L--GPDWH----TQVN-LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 212 l--~~~~~----~~~~-~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
. ...+. .... +.+..++.|++++.++.+..+..+++ ..+.....++.++.++.||.|.|....
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDD--GVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCC--cEEEEEEcCCEEEEcCEEEECCCcchH
Confidence 0 00100 0011 23344778999999999999987663 233344444478999999999998654
No 379
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0058 Score=57.84 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=65.9
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCc-EEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCC-C
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVD-IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP-S 211 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~-V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 211 (454)
-.++|||+|+.|+-+|..+. +.+ +.+++.. ..-.. +.. ... +-..+.+.. .
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-~~gg~-~~~--~~~---------------------venypg~~~~~ 58 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-EPGGQ-LTK--TTD---------------------VENYPGFPGGI 58 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-CcCCc-ccc--cee---------------------ecCCCCCccCC
Confidence 47999999999999998885 767 4444432 11100 000 000 000001111 1
Q ss_pred CCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 212 LGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 212 l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
.++++..+ +.+.....|+++.. ..+.+++..++ .+.|.+++++ ++++.||+|||..+...
T Consensus 59 ~g~~L~~~--~~~~a~~~~~~~~~-~~v~~v~~~~~---~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 59 LGPELMEQ--MKEQAEKFGVEIVE-DEVEKVELEGG---PFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred chHHHHHH--HHHHHhhcCeEEEE-EEEEEEeecCc---eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 22222222 12233457888888 57777777652 5788888887 99999999999988764
No 380
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.04 E-value=0.0011 Score=67.38 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=30.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 689999999999999999886 9999999987754
No 381
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.03 E-value=0.00066 Score=70.68 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
++||||||+|.||++||.++++. |.+|+|+|+....
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lleK~~~~ 42 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQS--GQSCALLSKVFPT 42 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccCCC
Confidence 36999999999999999999997 8999999998543
No 382
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.03 E-value=0.00098 Score=70.23 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 689999999999999999886 9999999988754
No 383
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.02 E-value=0.0016 Score=71.85 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++|+|||||+.|+.+|..|+ |.+|+++++.+.+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 479999999999999999986 9999999987654
No 384
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.01 E-value=0.00084 Score=67.42 Aligned_cols=42 Identities=29% Similarity=0.507 Sum_probs=38.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT 45 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~ 45 (454)
++||+|||||..|+.+|..++.+ |.+|+|+|++++..+...+
T Consensus 12 ~~DviVIGGGitG~GiArDaA~R--Gl~v~LvE~~D~AsGTSsr 53 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGR--GLKVALVEKGDLASGTSSR 53 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhC--CCeEEEEecCcccCcccCc
Confidence 58999999999999999999998 9999999999987765544
No 385
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.01 E-value=0.0016 Score=66.33 Aligned_cols=76 Identities=16% Similarity=0.167 Sum_probs=56.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
+++++|+|+|.+|+++|..|. |.+|+++++++. +....+.+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l--------------------------- 60 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAIL--------------------------- 60 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHH---------------------------
Confidence 789999999999999998886 999999986542 1122223334
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
++.||+++.+..+. ....+|+||+++|..|+.+
T Consensus 61 --------------~~~gv~~~~~~~~~-------------------~~~~~D~Vv~s~Gi~~~~~ 93 (480)
T PRK01438 61 --------------EALGATVRLGPGPT-------------------LPEDTDLVVTSPGWRPDAP 93 (480)
T ss_pred --------------HHcCCEEEECCCcc-------------------ccCCCCEEEECCCcCCCCH
Confidence 33799988775332 1245899999999999987
No 386
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.01 E-value=0.0029 Score=61.41 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=38.6
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceE-EEecCCcEEecCEEEEeeccCcCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAY-VKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~-v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.+.+++.|++++++++|+++..+++ .+. |.+++|+ +.+|.||+|+|.....
T Consensus 154 ~~~~~~~Gv~i~~~~~V~~i~~~~~---~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 154 AAEAQRAGVEIRTGTEVTSIDVDGG---RVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHTT-EEEESEEEEEEEEETT---EEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred HHHHHHhhhhccccccccchhhccc---ccccccccccc-cccceeEeccccccee
Confidence 3444678999999999999998763 344 8999987 9999999999986543
No 387
>KOG0685|consensus
Probab=96.99 E-value=0.00088 Score=65.13 Aligned_cols=45 Identities=24% Similarity=0.300 Sum_probs=36.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPV 48 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~ 48 (454)
.+|||||||.||++||.+|.+.+ ..+++|+|.++..++-.+.-++
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ti~~ 66 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIHTIPF 66 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEeeEEc
Confidence 47999999999999999999772 5589999999888765444333
No 388
>PRK10015 oxidoreductase; Provisional
Probab=96.99 E-value=0.0039 Score=62.46 Aligned_cols=138 Identities=11% Similarity=0.111 Sum_probs=71.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCC-cchhhhHHHhhccC--CCChhhhhhhccccc--CC-C
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDP-GAAEFFQDSINKTN--TAKPETIFKRMRYNT--GG-E 207 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~-~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~--~~-~ 207 (454)
-.++|||||+.|+-+|..|+ |.+|.++++.+.+-.+.... .+.....+.+.... .........+..+.+ .. .
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 37999999999999999987 99999999876542211100 11111111111000 000000000000100 00 0
Q ss_pred ----CC-CC--C--CCccc-cc--cc--cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 208 ----KG-PS--L--GPDWH-TQ--VN--LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 208 ----~~-~~--l--~~~~~-~~--~~--~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.. .. . ...+. .+ +. +.+..++.|++++.++.|+.+..+++ .+.....++.++.+|.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~---~v~~v~~~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGN---KVTGVQAGDDILEANVVILADGV 162 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCC---EEEEEEeCCeEEECCEEEEccCc
Confidence 00 00 0 00010 01 00 23334667999999999999876542 23323344567999999999998
Q ss_pred CcC
Q psy1545 274 VPN 276 (454)
Q Consensus 274 ~p~ 276 (454)
...
T Consensus 163 ~s~ 165 (429)
T PRK10015 163 NSM 165 (429)
T ss_pred chh
Confidence 654
No 389
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.99 E-value=0.0034 Score=62.65 Aligned_cols=140 Identities=21% Similarity=0.300 Sum_probs=74.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc------ccCCcchhhhHHH-hhccCCCChhhhhhhcccccC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT------FLDPGAAEFFQDS-INKTNTAKPETIFKRMRYNTG 205 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~------~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ 205 (454)
..+|+|||||+.|+-+|..|+ |.+|+++++.+..... .+.+...+.+.+. +.+...+.... .....+...
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~-~~~~~~~~~ 96 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGK-FRQIRLSDA 96 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCC-ccEEEEEeC
Confidence 457999999999999999997 9999999998754211 1222222222110 00000000000 000000000
Q ss_pred C-----CCCC-CCCCc---c---cccc--ccccCccC-CceEEEeCceEEEEEcCCCCccceEEEecC-C--cEEecCEE
Q psy1545 206 G-----EKGP-SLGPD---W---HTQV--NLHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTN-G--HTHACDIV 267 (454)
Q Consensus 206 ~-----~~~~-~l~~~---~---~~~~--~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g--~~~~~D~v 267 (454)
. .+.. .+... + ...+ .+.+.+.+ .+++++.++++++++.+++ .+.+.+++ + .++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~---~~~v~~~~~~~~~~i~adlv 173 (415)
T PRK07364 97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQD---AATVTLEIEGKQQTLQSKLV 173 (415)
T ss_pred CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC---eeEEEEccCCcceEEeeeEE
Confidence 0 0000 00000 0 0100 02222333 4899999999999977653 45566653 2 46999999
Q ss_pred EEeeccCcCcc
Q psy1545 268 VSAIGVVPNSN 278 (454)
Q Consensus 268 i~a~G~~p~~~ 278 (454)
|.|.|......
T Consensus 174 IgADG~~S~vR 184 (415)
T PRK07364 174 VAADGARSPIR 184 (415)
T ss_pred EEeCCCCchhH
Confidence 99999987653
No 390
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.98 E-value=0.004 Score=64.44 Aligned_cols=139 Identities=19% Similarity=0.309 Sum_probs=75.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHH-hhccCCCChhhhhhhcccccC-C
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDS-INKTNTAKPETIFKRMRYNTG-G 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~-~ 206 (454)
..+|+|||+|+.|+-+|..|. |.+|+++++.+.+... .+++...+.+... +.+...+... ......+... +
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~-~~~~~~~~~~~g 88 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTT-PNHGMRFLDAKG 88 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcc-cCCceEEEcCCC
Confidence 468999999999999999986 9999999998754321 1222222222110 0000000000 0000111000 0
Q ss_pred C----CC----CCCC-C---ccccc-c--ccccCccC-CceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCE
Q psy1545 207 E----KG----PSLG-P---DWHTQ-V--NLHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDI 266 (454)
Q Consensus 207 ~----~~----~~l~-~---~~~~~-~--~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~ 266 (454)
. +. ...+ + .+.+. + .+.+.+.+ .|++++.++++++++.+++ .+.+.++ +| +++.+|+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~---~v~v~~~~~~G~~~~i~ad~ 165 (538)
T PRK06183 89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD---GVTVTLTDADGQRETVRARY 165 (538)
T ss_pred CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC---eEEEEEEcCCCCEEEEEEEE
Confidence 0 00 0000 0 00000 0 01222333 4899999999999987664 4566665 46 5799999
Q ss_pred EEEeeccCcCc
Q psy1545 267 VVSAIGVVPNS 277 (454)
Q Consensus 267 vi~a~G~~p~~ 277 (454)
||-|.|.+...
T Consensus 166 vVgADG~~S~v 176 (538)
T PRK06183 166 VVGCDGANSFV 176 (538)
T ss_pred EEecCCCchhH
Confidence 99999987643
No 391
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=96.98 E-value=0.0025 Score=63.03 Aligned_cols=44 Identities=32% Similarity=0.400 Sum_probs=35.8
Q ss_pred ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 230 gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++. +.++++.+++..++ .+.+.+++|+++.+|+||.|.|.....
T Consensus 126 ~~~-~~~~~v~~i~~~~~---~~~v~~~~g~~~~a~~vI~AdG~~S~v 169 (388)
T PRK07494 126 NIT-RFGDEAESVRPRED---EVTVTLADGTTLSARLVVGADGRNSPV 169 (388)
T ss_pred CcE-EECCeeEEEEEcCC---eEEEEECCCCEEEEeEEEEecCCCchh
Confidence 566 88999999976553 467888888899999999999997654
No 392
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.98 E-value=0.0024 Score=63.74 Aligned_cols=35 Identities=23% Similarity=0.121 Sum_probs=31.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS---NVDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~ 169 (454)
+++|+|||+|+.|+.+|..++ |.+|+++++.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 789999999999999998653 89999999988664
No 393
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.97 E-value=0.0043 Score=63.75 Aligned_cols=135 Identities=12% Similarity=0.191 Sum_probs=69.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc-ccCCcchh----hhHHHhhccCCCChhhhhhhc--ccccCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT-FLDPGAAE----FFQDSINKTNTAKPETIFKRM--RYNTGG 206 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~-~~d~~~~~----~~~~~l~~~~~~~~~~~~~~~--~~~~~~ 206 (454)
-.|+|||||..|+++|..++ |.+|.++++....... ...|.+.. .+.+.+..... ......... .+....
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg-~~g~~~d~~giq~r~ln 83 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGG-EMGKAIDKTGIQFRMLN 83 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCC-HHHHHHhhccCceeecc
Confidence 36999999999999999886 9999999987422111 01122211 11222211000 000000000 000000
Q ss_pred CC-CCCCC---Ccccccc---ccccCcc-CCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 207 EK-GPSLG---PDWHTQV---NLHGSSR-DTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 207 ~~-~~~l~---~~~~~~~---~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
.. ++... ..+.+.. .+.+.+. ..|++++. ..+.++..++ +....|.+.+|..+.|+.||+|+|..
T Consensus 84 ~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e~--grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 84 TSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVEN--GRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred cCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEecC--CEEEEEEECCCCEEECCEEEEeeCcc
Confidence 00 01000 0111111 1223333 34899865 4677776544 23566888899999999999999954
No 394
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=96.97 E-value=0.0019 Score=70.21 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=30.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++|+|||||+.|+.+|..|+ |.+|+++++.+.+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 478999999999999999987 9999999987653
No 395
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.97 E-value=0.002 Score=63.79 Aligned_cols=135 Identities=19% Similarity=0.320 Sum_probs=74.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc------ccccCCcchhhhHH-----HhhccCCCChhhhhhhccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS------ATFLDPGAAEFFQD-----SINKTNTAKPETIFKRMRY 202 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~------~~~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~ 202 (454)
.+|+|||+|+.|+-+|..|+ |.+|+++++.+... ...+.+...+.+.+ .+.+. .. ......+
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~-~~----~~~~~~~ 77 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDRE-GL----VHDGIEL 77 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhc-CC----ccCcEEE
Confidence 57999999999999999986 99999999987521 11122222222221 11100 00 0000111
Q ss_pred ccCC-----CCCCCC-CCcc---ccc-c--ccccCccCCceEEEeCceEEEEEc-CCCCccceEEEe-cCC--cEEecCE
Q psy1545 203 NTGG-----EKGPSL-GPDW---HTQ-V--NLHGSSRDTKITIEYSCEVERIVD-SEDDTCNAYVKL-TNG--HTHACDI 266 (454)
Q Consensus 203 ~~~~-----~~~~~l-~~~~---~~~-~--~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~~~~v~~-~~g--~~~~~D~ 266 (454)
...+ .+.... +... .+. + .+.+...+.|+++++++++++++. +++ ...|.+ .+| .++.+|+
T Consensus 78 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~---~~~V~~~~~G~~~~i~ad~ 154 (392)
T PRK08243 78 RFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSD---RPYVTYEKDGEEHRLDCDF 154 (392)
T ss_pred EECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCC---ceEEEEEcCCeEEEEEeCE
Confidence 1100 000000 0000 010 0 122223557999999999999876 332 345666 466 3689999
Q ss_pred EEEeeccCcCcc
Q psy1545 267 VVSAIGVVPNSN 278 (454)
Q Consensus 267 vi~a~G~~p~~~ 278 (454)
||-|-|.+....
T Consensus 155 vVgADG~~S~vR 166 (392)
T PRK08243 155 IAGCDGFHGVSR 166 (392)
T ss_pred EEECCCCCCchh
Confidence 999999987654
No 396
>KOG2614|consensus
Probab=96.96 E-value=0.00095 Score=63.91 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 1 M~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
|+.+|||||||.+|+++|..|.++ |.+|+|+|+...+
T Consensus 1 ~~~~VvIvGgGI~Gla~A~~l~r~--G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 1 KEPKVVIVGGGIVGLATALALHRK--GIDVVVLESREDP 37 (420)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHc--CCeEEEEeecccc
Confidence 356899999999999999999998 9999999997554
No 397
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.93 E-value=0.0017 Score=68.55 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 579999999999999999987 9999999987764
No 398
>PLN02815 L-aspartate oxidase
Probab=96.93 E-value=0.00085 Score=69.66 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
++||||||+|.||++||..+++. + +|+|+|+.+..+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~--G-~VvlleK~~~~g 64 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEY--G-TVAIITKDEPHE 64 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhC--C-CEEEEECCCCCC
Confidence 47999999999999999999997 7 899999987643
No 399
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.91 E-value=0.0011 Score=64.52 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=34.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
..||||||+|.+||++|++|.+. |++|+|+|..+..++
T Consensus 7 ~~~viivGaGlaGL~AA~eL~ka--G~~v~ilEar~r~GG 44 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKA--GYQVQILEARDRVGG 44 (450)
T ss_pred CCcEEEECCchHHHHHHHHHhhc--CcEEEEEeccCCcCc
Confidence 36899999999999999999998 999999999987754
No 400
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=96.91 E-value=0.001 Score=66.65 Aligned_cols=138 Identities=12% Similarity=0.147 Sum_probs=27.7
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc-------cCCcc-----hhhhHHHhhccCCCChhhhhhhccc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF-------LDPGA-----AEFFQDSINKTNTAKPETIFKRMRY 202 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~-------~d~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (454)
.|+|||||+.|+-+|..++ |.+|.|+++.+.+-... ++..- ..-+...+.+ .+......
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~-------~~~~~~~~ 73 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLN-------RLRARGGY 73 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHH-------ST------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHH-------HHhhhccc
Confidence 3899999999999998886 99999999988653211 11100 0111111111 00000000
Q ss_pred ccCCCCC----CCCCCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecC--C-cEEecCEEEEeeccCc
Q psy1545 203 NTGGEKG----PSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN--G-HTHACDIVVSAIGVVP 275 (454)
Q Consensus 203 ~~~~~~~----~~l~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~--g-~~~~~D~vi~a~G~~p 275 (454)
....... ..+.++..... +.+.+++.|+++++++.+.++..++ ++...|.+.+ | .++.++.+|-|||.-
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~-l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g- 149 (428)
T PF12831_consen 74 PQEDRYGWVSNVPFDPEVFKAV-LDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDG- 149 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc-
Confidence 0000000 11223322221 3445577899999999999998765 3355555543 3 779999999999952
Q ss_pred CcccccCCCCcee
Q psy1545 276 NSNIQVHGTPFEL 288 (454)
Q Consensus 276 ~~~~~~~~~~l~~ 288 (454)
+ ++..+|++.
T Consensus 150 --~-l~~~aG~~~ 159 (428)
T PF12831_consen 150 --D-LAALAGAPY 159 (428)
T ss_dssp -------------
T ss_pred --c-ccccccccc
Confidence 3 455555444
No 401
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.90 E-value=0.0011 Score=68.61 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=34.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
++||||||+| +|++||..+++. |.+|+|||+.+..++.
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~--G~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHEL--GLSVLIVEKSSYVGGS 53 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHC--CCcEEEEecCCCCcCc
Confidence 5899999999 899999999998 9999999998776553
No 402
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.90 E-value=0.0015 Score=69.10 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=31.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++++|||+|+.|+.+|..|+ |.+|+++++.+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3689999999999999999986 9999999987654
No 403
>KOG2960|consensus
Probab=96.89 E-value=0.00027 Score=61.05 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK 40 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~ 40 (454)
.||||||+|.+|++||+.+.+..|+.+|.+||.+-.++
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 58999999999999999999888999999999986554
No 404
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.89 E-value=0.0054 Score=59.25 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.+|+|||||..+..++..|.+..+..+|+++.+++.+
T Consensus 191 ~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 191 KRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred CeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 5799999999999999999998666799999998654
No 405
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.0065 Score=53.27 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=100.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc------c----CCcchhhhHHHhhccCCCChhhhhhhccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF------L----DPGAAEFFQDSINKTNTAKPETIFKRMRY 202 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~------~----d~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 202 (454)
-..++|+|+|++|+-+|..|+ |.+|.+++|+-.+-... | -.+.++.+.+.+ .+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~---------------gI 94 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEF---------------GI 94 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHh---------------CC
Confidence 468999999999999999997 99999999866443221 1 111222222222 11
Q ss_pred ccCCCCCCCCC----CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-----------CCcEEecCEE
Q psy1545 203 NTGGEKGPSLG----PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-----------NGHTHACDIV 267 (454)
Q Consensus 203 ~~~~~~~~~l~----~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-----------~g~~~~~D~v 267 (454)
...+ ...-+. .+... .+....-+.|.+++..+.++.+.-.++ .+...+..+ |--.+++++|
T Consensus 95 ~ye~-~e~g~~v~ds~e~~s--kl~~~a~~aGaki~n~~~veDvi~r~~-~rVaGvVvNWt~V~~~~lhvDPl~i~a~~V 170 (262)
T COG1635 95 RYEE-EEDGYYVADSAEFAS--KLAARALDAGAKIFNGVSVEDVIVRDD-PRVAGVVVNWTPVQMAGLHVDPLTIRAKAV 170 (262)
T ss_pred ccee-cCCceEEecHHHHHH--HHHHHHHhcCceeeecceEEEEEEecC-CceEEEEEecchhhhcccccCcceeeEEEE
Confidence 1110 000000 00000 011222457899999999998765443 123333332 2246889999
Q ss_pred EEeeccCcCcccccCC----CCceecCCCceEec--cc-----cccccCceeecCcccccCCccccchhhccChHHH-HH
Q psy1545 268 VSAIGVVPNSNIQVHG----TPFELAPDCGIGVN--EL-----MQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQA-KH 335 (454)
Q Consensus 268 i~a~G~~p~~~~~~~~----~~l~~~~~g~i~vd--~~-----~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A-~~ 335 (454)
+-|||.....-.++.. .+.++-..+....+ +. .+--+||+|++|=.+..- ...+ .+.-..-+ ..
T Consensus 171 vDaTGHda~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av-~G~p---RMGPiFGgMll 246 (262)
T COG1635 171 VDATGHDAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAV-HGLP---RMGPIFGGMLL 246 (262)
T ss_pred EeCCCCchHHHHHHHHhccccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhh-cCCc---ccCchhhhhhh
Confidence 9999997654212221 11222111222222 11 122479999999766532 1111 01111222 35
Q ss_pred HHHHHHhhhcCCC
Q psy1545 336 MGTYAAKCMVGAV 348 (454)
Q Consensus 336 ~g~~aa~~i~~~~ 348 (454)
.|+.||+-++.++
T Consensus 247 SGkkaAe~i~e~L 259 (262)
T COG1635 247 SGKKAAEEILEKL 259 (262)
T ss_pred chHHHHHHHHHHh
Confidence 6788887776544
No 406
>PLN02529 lysine-specific histone demethylase 1
Probab=96.88 E-value=0.0011 Score=69.91 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+|+|||||++|++||..|++. |++|+|+|+.+..++.
T Consensus 161 ~~v~viGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 161 GSVIIVGAGLAGLAAARQLLSF--GFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCEEEECcCHHHHHHHHHHHHc--CCcEEEEecCccCcCc
Confidence 6899999999999999999998 9999999998876653
No 407
>PLN02487 zeta-carotene desaturase
Probab=96.88 E-value=0.0012 Score=68.05 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=34.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++|+|||||++|+++|+.|++. |++|+|+|+.+..++
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~--g~~v~i~E~~~~~gG 112 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRPFIGG 112 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhC--CCeeEEEecCCCCCC
Confidence 5899999999999999999998 899999999988765
No 408
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.87 E-value=0.0066 Score=59.51 Aligned_cols=129 Identities=12% Similarity=0.169 Sum_probs=67.0
Q ss_pred eEEEEcCchhHHHHHHHhc----CCcEEEEEeCCCcccc----ccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS----NVDIVWVVKDKHISAT----FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEK 208 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~----g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (454)
.++|||||..|+.+|..|. |.+|.++++.+.+.+. +++.+..+.....+...- ...+- ...+.+ ...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v--~~~W~--~~~v~~-~~~ 75 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLV--QTDWP--GYEVRF-PKY 75 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhh--eEeCC--CCEEEC-cch
Confidence 3789999999999998885 7899999987643321 223333222211111000 00000 001111 001
Q ss_pred CCCCCCccc--cccccccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 209 GPSLGPDWH--TQVNLHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 209 ~~~l~~~~~--~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
...+...+. .+..+.+.+ +..+..++.++.|.++..+. +.+++|+++.+|.||.|.|.++..
T Consensus 76 ~~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~-------v~l~dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 76 RRKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADG-------VDLAPGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred hhhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCE-------EEECCCCEEEeeEEEECCCCCCCc
Confidence 111111110 000011111 22233377788999884322 555788999999999999988643
No 409
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.87 E-value=0.0034 Score=61.75 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=37.2
Q ss_pred ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 230 gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+++++++++++++..+++ .+.+.++++ ++.+|+||-|-|......
T Consensus 119 ~v~~~~~~~v~~i~~~~~---~v~v~~~~~-~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 119 LITLIDNNQYQEVISHND---YSIIKFDDK-QIKCNLLIICDGANSKVR 163 (374)
T ss_pred CcEEECCCeEEEEEEcCC---eEEEEEcCC-EEeeCEEEEeCCCCchhH
Confidence 599999999999877653 466788776 899999999999987654
No 410
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.87 E-value=0.0058 Score=60.41 Aligned_cols=130 Identities=13% Similarity=0.139 Sum_probs=69.2
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhh--c-ccccCCCCCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR--M-RYNTGGEKGPS 211 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~ 211 (454)
.|+|||+|+.|+-+|..+. |.+|+++++.+.+... .........+.+.. . ....... . ...........
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~----~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 74 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN----HTYGVWDDDLSDLG-L-ADCVEHVWPDVYEYRFPKQPRK 74 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC----ccccccHhhhhhhc-h-hhHHhhcCCCceEEecCCcchh
Confidence 3799999999999998886 9999999987643211 00000000110000 0 0000000 0 00000000000
Q ss_pred CCCccc--cc----cccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 212 LGPDWH--TQ----VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 212 l~~~~~--~~----~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
+...+. .+ ..+.+.+.+.|++++. ..+..+...++ ....+.+++|+++.++.||.|+|..+
T Consensus 75 ~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~--~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 75 LGTAYGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADGV--ALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cCCceeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecCC--ceeEEEeCCCCEEEeCEEEECCCCch
Confidence 111110 00 0123334556898864 47888776531 24667788888899999999999876
No 411
>PRK06126 hypothetical protein; Provisional
Probab=96.86 E-value=0.0068 Score=62.85 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=30.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
..+|+|||||+.|+-+|..|+ |.+|+++++.+..
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~ 42 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGT 42 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 468999999999999999997 9999999987653
No 412
>PRK06185 hypothetical protein; Provisional
Probab=96.84 E-value=0.005 Score=61.30 Aligned_cols=140 Identities=16% Similarity=0.228 Sum_probs=72.7
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHHHhh--ccCCCChhhhhhhcccccCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQDSIN--KTNTAKPETIFKRMRYNTGG 206 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~ 206 (454)
..+|+|||||++|+-+|..|+ |.+|+++++.+..... .+.+...+.+.. +. +............+.+....
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~-lG~~~~~~~~~~~~~~~~~~~~~~ 84 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDE-LGLLERFLELPHQKVRTLRFEIGG 84 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHH-cCChhHHhhcccceeeeEEEEECC
Confidence 457999999999999999986 9999999987643211 112221112211 10 00000000000011111000
Q ss_pred C------C-----CCCCCCccccc-c--ccccCcc-CCceEEEeCceEEEEEcCCCCccc--eEEEecCCc-EEecCEEE
Q psy1545 207 E------K-----GPSLGPDWHTQ-V--NLHGSSR-DTKITIEYSCEVERIVDSEDDTCN--AYVKLTNGH-THACDIVV 268 (454)
Q Consensus 207 ~------~-----~~~l~~~~~~~-~--~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~--~~v~~~~g~-~~~~D~vi 268 (454)
. + ...++..+... + .+.+.+. ..|++++.++.+.++..+++ .. +.+..++|+ ++.+|+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~--~v~~v~~~~~~g~~~i~a~~vI 162 (407)
T PRK06185 85 RTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGG--RVTGVRARTPDGPGEIRADLVV 162 (407)
T ss_pred eEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC--EEEEEEEEcCCCcEEEEeCEEE
Confidence 0 0 00111001100 0 0122222 35899999999999986653 22 234445664 79999999
Q ss_pred EeeccCcCc
Q psy1545 269 SAIGVVPNS 277 (454)
Q Consensus 269 ~a~G~~p~~ 277 (454)
.|.|.....
T Consensus 163 ~AdG~~S~v 171 (407)
T PRK06185 163 GADGRHSRV 171 (407)
T ss_pred ECCCCchHH
Confidence 999987643
No 413
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.81 E-value=0.0013 Score=69.76 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=34.6
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.+|+|||||++|++||+.|.+. |++|+|+|+++.+++.
T Consensus 239 ~~v~IiGaG~aGl~aA~~L~~~--g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 239 ANVVVVGAGLAGLVAARQLLSM--GFKVVVLEGRARPGGR 276 (808)
T ss_pred CCEEEECcCHHHHHHHHHHHHC--CCcEEEEeccccCCCc
Confidence 6899999999999999999997 8999999999877653
No 414
>PLN02612 phytoene desaturase
Probab=96.78 E-value=0.0015 Score=67.69 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=39.1
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.+.+++.|.+|++++.|++|+.+++ +....+.+.+|+++++|.||+|++.
T Consensus 315 ~~~l~~~G~~I~l~~~V~~I~~~~~-g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 315 VDHFQSLGGEVRLNSRIKKIELNDD-GTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHhcCCEEEeCCeeeEEEECCC-CcEEEEEECCCcEEECCEEEECCCH
Confidence 3444568999999999999987543 3345577788989999999999754
No 415
>PRK07538 hypothetical protein; Provisional
Probab=96.78 E-value=0.0051 Score=61.42 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=29.6
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
+|+|||||+.|+-+|..|. |.+|+++++.+.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 36 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR 36 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 6899999999999999986 99999999987543
No 416
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.77 E-value=0.011 Score=50.11 Aligned_cols=42 Identities=31% Similarity=0.356 Sum_probs=32.0
Q ss_pred CceEEE-eCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 229 TKITIE-YSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 229 ~gv~i~-~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.|+++. ...+|+.+...++ ...+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~---~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDD---GYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCC---cEEEEECCCCEEEeCEEEECCCC
Confidence 454443 2347888888764 46788899999999999999996
No 417
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.77 E-value=0.0067 Score=62.92 Aligned_cols=135 Identities=19% Similarity=0.311 Sum_probs=73.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc----ccCCcchhhhHH-----HhhccCCCChhhhhhhcccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT----FLDPGAAEFFQD-----SINKTNTAKPETIFKRMRYN 203 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~----~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~ 203 (454)
..+|+|||+|+.|+-+|..|. |.+|+++++.+.+... .+.+...+.+.+ .+.+. .. . .......
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~-~~---~-~~~~~~~ 97 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDK-GV---S-WNVGKVF 97 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhh-Cc---e-eeceeEE
Confidence 457999999999999999986 9999999988754321 012222222111 01000 00 0 0000000
Q ss_pred cCC------CCCCCCC---Ccc--ccccc----cccCccC-CceEEEeCceEEEEEcCCCCccceEEEe--cCCc-EEec
Q psy1545 204 TGG------EKGPSLG---PDW--HTQVN----LHGSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKL--TNGH-THAC 264 (454)
Q Consensus 204 ~~~------~~~~~l~---~~~--~~~~~----~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~~g~-~~~~ 264 (454)
... ....... +.. ..+.. +.+.+.+ .++++++++++++++.+++ .+.+.+ .+|+ ++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~---~v~v~~~~~~g~~~i~a 174 (547)
T PRK08132 98 LRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDD---GVTLTVETPDGPYTLEA 174 (547)
T ss_pred eCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC---EEEEEEECCCCcEEEEe
Confidence 000 0000000 000 01101 2233333 4799999999999987654 343443 3554 6999
Q ss_pred CEEEEeeccCcCc
Q psy1545 265 DIVVSAIGVVPNS 277 (454)
Q Consensus 265 D~vi~a~G~~p~~ 277 (454)
|+||.|.|.....
T Consensus 175 d~vVgADG~~S~v 187 (547)
T PRK08132 175 DWVIACDGARSPL 187 (547)
T ss_pred CEEEECCCCCcHH
Confidence 9999999987654
No 418
>PRK12839 hypothetical protein; Provisional
Probab=96.77 E-value=0.0017 Score=67.41 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
++||+|||+|.+|++||..+++. +.+|+|||+.+..++
T Consensus 8 ~~dv~ViG~G~aG~~aa~~~~~~--g~~v~~iek~~~~gg 45 (572)
T PRK12839 8 TYDVVVVGSGAGGLSAAVAAAYG--GAKVLVVEKASTCGG 45 (572)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCc
Confidence 47999999999999999999998 899999999876543
No 419
>PRK02106 choline dehydrogenase; Validated
Probab=96.75 E-value=0.0016 Score=67.58 Aligned_cols=36 Identities=36% Similarity=0.556 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+|+||||||+||+.+|.+|++. ++.+|+|||+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCCc
Confidence 58999999999999999999993 4999999999964
No 420
>PRK11445 putative oxidoreductase; Provisional
Probab=96.74 E-value=0.011 Score=57.49 Aligned_cols=134 Identities=15% Similarity=0.208 Sum_probs=71.6
Q ss_pred eEEEEcCchhHHHHHHHhc-CCcEEEEEeCCCcc--------ccccCCcchhhhHHHhhccCCCChhhhhhhc------c
Q psy1545 137 KIVVIGNGGIATELVHELS-NVDIVWVVKDKHIS--------ATFLDPGAAEFFQDSINKTNTAKPETIFKRM------R 201 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~-g~~V~~i~~~~~~~--------~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~------~ 201 (454)
.|+|||+|+.|+-+|..|+ ..+|+++++.+... ...+.+. ..+.|.+............. .
T Consensus 3 dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~~~~~~~~~~~g~~l~~~----~~~~L~~lgl~~~~~~~~~~~~~~~~~ 78 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGKMKVIAIDKKHQCGTEGFSKPCGGLLAPD----AQKSFAKDGLTLPKDVIANPQIFAVKT 78 (351)
T ss_pred eEEEECCCHHHHHHHHHHhccCCEEEEECCCccccccccCcCcCccCHH----HHHHHHHcCCCCCcceeeccccceeeE
Confidence 6899999999999999886 58999999887432 1112222 22222211000000000000 0
Q ss_pred cccCCCCCCCCCCcc--cccccccc---CccCCceEEEeCceEEEEEcCCCCccceEEEe-cCCc--EEecCEEEEeecc
Q psy1545 202 YNTGGEKGPSLGPDW--HTQVNLHG---SSRDTKITIEYSCEVERIVDSEDDTCNAYVKL-TNGH--THACDIVVSAIGV 273 (454)
Q Consensus 202 ~~~~~~~~~~l~~~~--~~~~~~~~---~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~-~~g~--~~~~D~vi~a~G~ 273 (454)
+..........+... -.+..+.+ ...+.|++++.++.+++++..++ .+.+.+ ++|+ ++.+|+||.|.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~---~~~v~~~~~g~~~~i~a~~vV~AdG~ 155 (351)
T PRK11445 79 IDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDD---GYHVIFRADGWEQHITARYLVGADGA 155 (351)
T ss_pred ecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCC---EEEEEEecCCcEEEEEeCEEEECCCC
Confidence 000000000011010 00100111 12346899999999999987653 355654 5664 6899999999999
Q ss_pred CcCc
Q psy1545 274 VPNS 277 (454)
Q Consensus 274 ~p~~ 277 (454)
....
T Consensus 156 ~S~v 159 (351)
T PRK11445 156 NSMV 159 (351)
T ss_pred CcHH
Confidence 7654
No 421
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.73 E-value=0.0012 Score=61.48 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=35.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKT 45 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~ 45 (454)
++|+|||+|.+||+||..|.+ -++|+|+|.....++..+.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~rlGGha~T 48 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSR---RHDVTLFEADRRLGGHANT 48 (447)
T ss_pred cceEEEcccchhhhhHHhhhc---ccceEEEeccccccCccce
Confidence 689999999999999999998 4699999999988765443
No 422
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=96.72 E-value=0.0038 Score=61.79 Aligned_cols=131 Identities=12% Similarity=0.198 Sum_probs=68.4
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeC-CCccccccCCcchhhhHHHhhccCCCChhhhh---hhcccccCCC--C
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKD-KHISATFLDPGAAEFFQDSINKTNTAKPETIF---KRMRYNTGGE--K 208 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~-~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~--~ 208 (454)
.|+|||||+.|+-+|..|+ |.+|.++++. +...+ ....+.....+.+. ..+ .... ....+..... +
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~--cg~~i~~~~l~~l~---i~~-~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKP--CGGAIPPCLIEEFD---IPD-SLIDRRVTQMRMISPSRVPI 75 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCc--CcCCcCHhhhhhcC---Cch-HHHhhhcceeEEEcCCCcee
Confidence 5899999999999999887 9999999987 32211 11111111111110 000 0000 0111111000 0
Q ss_pred CCCCC--Ccc---ccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEecC------C--cEEecCEEEEee
Q psy1545 209 GPSLG--PDW---HTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN------G--HTHACDIVVSAI 271 (454)
Q Consensus 209 ~~~l~--~~~---~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~------g--~~~~~D~vi~a~ 271 (454)
...+. ..+ ..+.. +.+...+.|++++.+ .++++..+++ .+.+.+.+ | .++.+|+||.|.
T Consensus 76 ~~~~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~---~~~v~~~~~~~~~~~~~~~i~a~~VI~Ad 151 (388)
T TIGR02023 76 KVTIPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRD---GVTLTYRTPKKGAGGEKGSVEADVVIGAD 151 (388)
T ss_pred eeccCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCC---eEEEEEEeccccCCCcceEEEeCEEEECC
Confidence 00000 111 11111 223335579999866 5888876553 45565543 2 479999999999
Q ss_pred ccCcCc
Q psy1545 272 GVVPNS 277 (454)
Q Consensus 272 G~~p~~ 277 (454)
|.....
T Consensus 152 G~~S~v 157 (388)
T TIGR02023 152 GANSPV 157 (388)
T ss_pred CCCcHH
Confidence 986643
No 423
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.66 E-value=0.0019 Score=72.63 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+.||||||+|.||++||.++++. |.+|+|+|+.+..++
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~--Ga~VivlEK~~~~GG 446 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASC--GAQVILLEKEAKLGG 446 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCcEEEEEccCCCCC
Confidence 47999999999999999999998 999999999876543
No 424
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.66 E-value=0.0021 Score=65.56 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=34.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA 41 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~ 41 (454)
+||+|||+|++|+.+|+.|++. +.+|++||+....+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~--g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA--GLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC--CCeEEEEeccCccCC
Confidence 6999999999999999999998 899999999987653
No 425
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.62 E-value=0.012 Score=60.51 Aligned_cols=138 Identities=12% Similarity=0.206 Sum_probs=69.9
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcccc-ccCCcc----hhhhHHHhhccCCCChhhh-hhhcccccC-CC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT-FLDPGA----AEFFQDSINKTNTAKPETI-FKRMRYNTG-GE 207 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~-~~d~~~----~~~~~~~l~~~~~~~~~~~-~~~~~~~~~-~~ 207 (454)
.++|||+|..|+++|..++ |.+|.++++....... ...+.. ...+.+.+......-.... .....+... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 4899999999999999986 9999999986422110 001111 1111122211000000000 000001100 00
Q ss_pred CCCCCC-C--cccccc---ccccCccCC-ceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 208 KGPSLG-P--DWHTQV---NLHGSSRDT-KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 208 ~~~~l~-~--~~~~~~---~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
.++.+. + .+.+.. .+.+.+++. +++++.+ .+.++...++ +....|.+.+|..+.||.||+|+|.-.+
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~-g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDN-DEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecC-CcEEEEEECCCCEEECCEEEEccCcccC
Confidence 011110 0 111111 122334444 8888876 5666643311 2366788889989999999999999854
No 426
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.60 E-value=0.0094 Score=58.60 Aligned_cols=125 Identities=16% Similarity=0.243 Sum_probs=71.4
Q ss_pred EEEEcCchhHHHHHHHh--c--CCcEEEEEeCCCc--ccc----ccCCcchhhhHHHhhccCCCChhhhhhhcccccCCC
Q psy1545 138 IVVIGNGGIATELVHEL--S--NVDIVWVVKDKHI--SAT----FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGE 207 (454)
Q Consensus 138 vvVvG~G~~g~e~a~~l--~--g~~V~~i~~~~~~--~~~----~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (454)
++|||+|+.|+-+|..| . |.+|.++++.+.. ... +..++... +.+.... .+- ...+.+..
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~-~~~~v~~------~w~--~~~v~~~~- 71 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP-LDSLVSH------RWS--GWRVYFPD- 71 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc-hHHHHhe------ecC--ceEEEeCC-
Confidence 78999999999999999 4 8999999976654 111 11222111 1121111 000 11111111
Q ss_pred CCCCCCC-cc--ccccc----cccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 208 KGPSLGP-DW--HTQVN----LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 208 ~~~~l~~-~~--~~~~~----~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
....+.. .+ -.+.. +.+.+...| .++.+..|.+++..++ ...+.+++|.++.++.|+-|.|..+.
T Consensus 72 ~~~~~~~~~Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~---~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 72 GSRILIDYPYCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD---GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred CceEEcccceEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc---eEEEEECCCCEEEeeEEEECCCcccc
Confidence 1111111 11 01111 223334334 5667789999998763 56788999999999999999996654
No 427
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.58 E-value=0.0027 Score=66.15 Aligned_cols=40 Identities=35% Similarity=0.443 Sum_probs=35.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
++||+|||+|.+|++||..+++. |.+|+|||+.+..++..
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~--g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIA--GLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcc
Confidence 47999999999999999999998 89999999987765443
No 428
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.57 E-value=0.0083 Score=59.36 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=73.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc------cccCCcchhhhHH-----HhhccCCCChhhhhhhcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA------TFLDPGAAEFFQD-----SINKTNTAKPETIFKRMR 201 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~------~~~d~~~~~~~~~-----~l~~~~~~~~~~~~~~~~ 201 (454)
..+|+|||||+.|+-+|..|. |.+|+++++.+...+ ..+.+...+.+.+ .+.+. .. ......
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~-~~----~~~~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDRE-GL----VHEGTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhc-Cc----eecceE
Confidence 467999999999999999986 999999999875211 1122221122211 11100 00 000000
Q ss_pred cccCC-----CCCCCCC-Cc--cccc----cccccCccCCceEEEeCceEEEEEcCCCCccceEEEec-CCc--EEecCE
Q psy1545 202 YNTGG-----EKGPSLG-PD--WHTQ----VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NGH--THACDI 266 (454)
Q Consensus 202 ~~~~~-----~~~~~l~-~~--~~~~----~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g~--~~~~D~ 266 (454)
+.... .+..... .. ...+ ..+.+.+.+.|+.++++..+.++...++ ....|.+. +|+ ++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~~~~V~~~~~g~~~~i~adl 154 (390)
T TIGR02360 77 IAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAG--DRPYVTFERDGERHRLDCDF 154 (390)
T ss_pred EeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCC--CccEEEEEECCeEEEEEeCE
Confidence 00000 0000000 00 0000 0123334556899999988777754221 13456664 774 689999
Q ss_pred EEEeeccCcCcc
Q psy1545 267 VVSAIGVVPNSN 278 (454)
Q Consensus 267 vi~a~G~~p~~~ 278 (454)
||-|-|.+....
T Consensus 155 vIGADG~~S~VR 166 (390)
T TIGR02360 155 IAGCDGFHGVSR 166 (390)
T ss_pred EEECCCCchhhH
Confidence 999999987553
No 429
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.54 E-value=0.0066 Score=59.95 Aligned_cols=33 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
+|+|||||..|+|+|..|+ |.+|+++++++...
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 6899999999999999986 99999999877643
No 430
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.54 E-value=0.0044 Score=64.45 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=30.9
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
.+++|+|||+|++|+.+|..+. |.+|+++++.+.+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4789999999999999999886 9999999987654
No 431
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.50 E-value=0.016 Score=60.53 Aligned_cols=42 Identities=31% Similarity=0.367 Sum_probs=34.7
Q ss_pred EEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 233 IEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 233 i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
++.+++|++++..++ .+++.+++|+++.+|+||.|-|.....
T Consensus 209 i~~g~~V~~I~~~~d---~VtV~~~dG~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 209 IRNESNVVDFEDSGD---KVTVVLENGQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred EEcCCEEEEEEEeCC---EEEEEECCCCEEEcCEEEECCCCCcHH
Confidence 677889999986653 577889999889999999999987644
No 432
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.50 E-value=0.0067 Score=60.11 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=38.4
Q ss_pred CceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 229 ~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.|++++.+++++++...++ .+.+.+++|.++.+|.||.|.|.....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~---~~~v~~~~g~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 126 PGVTLHCPARVANVERTQG---SVRVTLDDGETLTGRLLVAADGSHSAL 171 (395)
T ss_pred CCcEEEcCCEEEEEEEcCC---eEEEEECCCCEEEeCEEEEecCCChhh
Confidence 5899999999999976543 466888888889999999999997653
No 433
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.44 E-value=0.02 Score=56.81 Aligned_cols=31 Identities=13% Similarity=0.381 Sum_probs=28.0
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
+|+|||||+.|+-+|..++ |.+|.++++...
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 6899999999999999887 999999998754
No 434
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.44 E-value=0.02 Score=63.51 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=63.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCC-CeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcc-eEEEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPG-ESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVD-TVAAI 79 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g-~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~v~~i 79 (454)
.+++|||+|+.|+.+|..|++. + ..|+|++..+... ....+.+.+ +|+++.+ .+..+
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~--G~~vV~vv~~~~~~~------------------~~l~~~L~~~GV~i~~~~~v~~i 377 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA--GIAVVAIIDARADVS------------------PEARAEARELGIEVLTGHVVAAT 377 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc--CCceEEEEccCcchh------------------HHHHHHHHHcCCEEEcCCeEEEE
Confidence 4799999999999999999998 7 4688998765321 112344555 8999866 67777
Q ss_pred eCccc--EEEec----cCcEEEecEEEEecCCCCCC
Q psy1545 80 DPRVN--CVITE----KQNRIKYKTLCICTGASPRK 109 (454)
Q Consensus 80 ~~~~~--~v~~~----~g~~i~~d~lviAtG~~p~~ 109 (454)
..+.. .|.+. +++++.+|.|+++.|.+|..
T Consensus 378 ~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt 413 (985)
T TIGR01372 378 EGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVV 413 (985)
T ss_pred ecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchh
Confidence 65432 23333 34679999999999998865
No 435
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=96.40 E-value=0.0091 Score=60.06 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=38.8
Q ss_pred ceEEEeCceEEEEEcC----CCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 230 KITIEYSCEVERIVDS----EDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 230 gv~i~~~~~v~~i~~~----~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+++++.++++.+++.. ++....+++.+.+|+++.+|+||-|-|......
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 5999999999999742 101235778889999999999999999987654
No 436
>PRK13984 putative oxidoreductase; Provisional
Probab=96.39 E-value=0.0056 Score=64.28 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=31.1
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCc
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHI 168 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~ 168 (454)
++++++|||+|+.|+.+|..|. |.+|+++++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~ 318 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKP 318 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4788999999999999999886 9999999987754
No 437
>KOG2844|consensus
Probab=96.38 E-value=0.01 Score=60.11 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=38.3
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
++.|+.|+.++.|+++....+ +...|++..| .+++..+|-|+|+...
T Consensus 198 ~~~GA~viE~cpV~~i~~~~~--~~~gVeT~~G-~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 198 SALGALVIENCPVTGLHVETD--KFGGVETPHG-SIETECVVNAAGVWAR 244 (856)
T ss_pred HhcCcEEEecCCcceEEeecC--CccceeccCc-ceecceEEechhHHHH
Confidence 458999999999999986553 2457888888 5999999999999753
No 438
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.32 E-value=0.018 Score=56.27 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=32.6
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
.++++|||||..|++.|..|+ |.+|+++++.+.+-.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 579999999999999999997 999999999876654
No 439
>PRK06996 hypothetical protein; Provisional
Probab=96.32 E-value=0.018 Score=57.17 Aligned_cols=49 Identities=20% Similarity=0.149 Sum_probs=38.5
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC---cEEecCEEEEeeccC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAIGVV 274 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g---~~~~~D~vi~a~G~~ 274 (454)
.+.+++.|++++.++++++++.+++ .+++.+.++ +++.+|+||-|-|..
T Consensus 122 ~~~~~~~g~~~~~~~~v~~~~~~~~---~v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 122 ARAVRGTPVRWLTSTTAHAPAQDAD---GVTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred HHHHHhCCCEEEcCCeeeeeeecCC---eEEEEECCCCcceEEeeeEEEECCCCC
Confidence 3445667999999999999977653 467777754 689999999999953
No 440
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.29 E-value=0.018 Score=59.38 Aligned_cols=47 Identities=23% Similarity=0.223 Sum_probs=41.9
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
+++||+++++..+..|.... ..|..++|.++.+|-+++|||..|...
T Consensus 70 ~~~~i~L~~~~~v~~idr~~-----k~V~t~~g~~~~YDkLilATGS~pfi~ 116 (793)
T COG1251 70 EENGITLYTGEKVIQIDRAN-----KVVTTDAGRTVSYDKLIIATGSYPFIL 116 (793)
T ss_pred HHcCcEEEcCCeeEEeccCc-----ceEEccCCcEeecceeEEecCcccccc
Confidence 55899999999999998876 357888899999999999999999876
No 441
>PLN03000 amine oxidase
Probab=96.29 E-value=0.0047 Score=65.86 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=35.1
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcccccc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVT 43 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~ 43 (454)
.+|+|||||++|+++|..|++. +++|+|+|+.+..++..
T Consensus 185 ~~VvIIGaG~aGL~aA~~L~~~--G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 185 SSVVIVGAGLSGLAAARQLMRF--GFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCEEEECccHHHHHHHHHHHHC--CCcEEEEEccCcCCCCc
Confidence 6899999999999999999998 88999999998876543
No 442
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.28 E-value=0.0033 Score=65.65 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 5 vvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
|||||+|.||++||..+++. |.+|+|+|+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~--G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL--GYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHc--CCCEEEEEecC
Confidence 69999999999999999998 88999999987
No 443
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.27 E-value=0.015 Score=52.76 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=70.8
Q ss_pred eEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc----cCCc---------------chhhhHHHhhccCCCChhh
Q psy1545 137 KIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF----LDPG---------------AAEFFQDSINKTNTAKPET 195 (454)
Q Consensus 137 ~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~----~d~~---------------~~~~~~~~l~~~~~~~~~~ 195 (454)
+|+|||+|+-|+-+|..|+ |.+|++++++..+..+. ++.. +.+.+ +.+.+. ...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V-e~~~~~----glV 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV-EALRDD----GLV 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH-HHHHhC----Cce
Confidence 6899999999999999997 99999999876444321 1111 11111 111110 000
Q ss_pred hhhhccc-ccCCC----CC---CCCC-CccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCC-cEEecC
Q psy1545 196 IFKRMRY-NTGGE----KG---PSLG-PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-HTHACD 265 (454)
Q Consensus 196 ~~~~~~~-~~~~~----~~---~~l~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g-~~~~~D 265 (454)
......+ .+... .+ +-.+ +.++.. .+. -....+|+++++|+++...++ ..++.+++| ....+|
T Consensus 78 ~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsal---ak~-LAtdL~V~~~~rVt~v~~~~~---~W~l~~~~g~~~~~~d 150 (331)
T COG3380 78 DVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSAL---AKF-LATDLTVVLETRVTEVARTDN---DWTLHTDDGTRHTQFD 150 (331)
T ss_pred eeccccccccccCCCCCCCCCCccccCcchHHH---HHH-HhccchhhhhhhhhhheecCC---eeEEEecCCCcccccc
Confidence 0110011 11100 00 0111 112211 111 225678899999999987753 789999766 668999
Q ss_pred EEEEeecc
Q psy1545 266 IVVSAIGV 273 (454)
Q Consensus 266 ~vi~a~G~ 273 (454)
.|++++..
T Consensus 151 ~vvla~PA 158 (331)
T COG3380 151 DVVLAIPA 158 (331)
T ss_pred eEEEecCC
Confidence 99999865
No 444
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.24 E-value=0.0057 Score=56.80 Aligned_cols=34 Identities=24% Similarity=0.489 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+|++|||+|.||+.||.+|+.. |.+|+++|.+.
T Consensus 5 ~~dvivvgaglaglvaa~elA~a--G~~V~ildQEg 38 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADA--GKRVLILDQEG 38 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhc--CceEEEEcccc
Confidence 47999999999999999999998 99999999874
No 445
>KOG0399|consensus
Probab=96.20 E-value=0.0071 Score=64.48 Aligned_cols=36 Identities=14% Similarity=0.350 Sum_probs=32.8
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
+++|.|||+|+.|+.+|..|. |..|++.+|+++.-.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence 789999999999999999985 999999999998654
No 446
>PLN02976 amine oxidase
Probab=96.19 E-value=0.0054 Score=68.06 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=35.0
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAV 42 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~ 42 (454)
.++|+|||||++|+++|..|.+. |.+|+|+|+.+.+++.
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~--G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQ--GFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHC--CCcEEEEeeccCCCCc
Confidence 36899999999999999999998 8899999998877654
No 447
>KOG1346|consensus
Probab=96.18 E-value=0.017 Score=55.36 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=64.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC--CCCeEE-EECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEc-ceEE
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH--PGESIG-LVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIV-DTVA 77 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~--~g~~v~-lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~-~~v~ 77 (454)
..|.|||+|+-|...|+.|.+.. .|.+|. +++..... ...+ +..+.+...+.+++ +++++. ..|.
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm---------~kiL-Peyls~wt~ekir~~GV~V~pna~v~ 417 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM---------EKIL-PEYLSQWTIEKIRKGGVDVRPNAKVE 417 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh---------hhhh-HHHHHHHHHHHHHhcCceeccchhhh
Confidence 46899999999999999998752 244443 23222111 1111 11233333455566 999884 4676
Q ss_pred EEeCc--ccEEEeccCcEEEecEEEEecCCCCCCCC
Q psy1545 78 AIDPR--VNCVITEKQNRIKYKTLCICTGASPRKIW 111 (454)
Q Consensus 78 ~i~~~--~~~v~~~~g~~i~~d~lviAtG~~p~~~~ 111 (454)
++... +..+.+.+|.+++.|.+|+|+|..|+..-
T Consensus 418 sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~el 453 (659)
T KOG1346|consen 418 SVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSEL 453 (659)
T ss_pred hhhhhccceEEEecCCCeeeeeeEEEEecCCCchhh
Confidence 66543 34567889999999999999999987643
No 448
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.17 E-value=0.0048 Score=63.59 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=32.3
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|+||||+|.+|..+|.+|.. ++.+|+|+|+.+.
T Consensus 7 ~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~~ 41 (542)
T COG2303 7 EYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGGP 41 (542)
T ss_pred CCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCCC
Confidence 6899999999999999999995 5999999999864
No 449
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.16 E-value=0.0065 Score=65.31 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=30.0
Q ss_pred cCCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 134 ~~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
.+++|+|||+|+.|+.+|..|+ |.+||++++.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 4789999999999999999997 99999999753
No 450
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.02 E-value=0.0062 Score=62.91 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|+||||||.||+.+|.+|++. +..+|+|||+.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~-~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSED-VSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccC-CCCeEEEEecCCC
Confidence 799999999999999999997 2479999999974
No 451
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.98 E-value=0.048 Score=55.92 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=38.0
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEe--cCC--cEEecCEEEEeec-cCcCcc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--TNG--HTHACDIVVSAIG-VVPNSN 278 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~~g--~~~~~D~vi~a~G-~~p~~~ 278 (454)
.+.+++.|+++++++.++++..++ +....+.. .++ .++.++.||+|+| +.+|.+
T Consensus 197 ~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~ 255 (506)
T PRK06481 197 LKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGFGANKD 255 (506)
T ss_pred HHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHH
Confidence 444567899999999999998654 23333433 443 3689999999997 666544
No 452
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=95.98 E-value=0.051 Score=54.76 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=29.2
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
.-.|+|||||+.|+-+|..|+ |.+|.++++...
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 458999999999999998886 999999998753
No 453
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=95.91 E-value=0.057 Score=54.39 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=35.7
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEe--cCCc--EEecCEEEEeeccC
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL--TNGH--THACDIVVSAIGVV 274 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~--~~g~--~~~~D~vi~a~G~~ 274 (454)
.+.+++.|+++++++.++++..+++ +....+.. .+++ .+.++.||+|+|-.
T Consensus 137 ~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~ 191 (439)
T TIGR01813 137 YKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAKAVVLATGGF 191 (439)
T ss_pred HHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence 4445778999999999999986532 23333444 3443 47899999999843
No 454
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.0073 Score=60.01 Aligned_cols=137 Identities=15% Similarity=0.151 Sum_probs=71.6
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccc-cCCcchhhhHHHhhccC---------CCChhhhhhhcccc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATF-LDPGAAEFFQDSINKTN---------TAKPETIFKRMRYN 203 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~-~d~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~ 203 (454)
-.|+|||||..|+|+|.+.+ |+++.+++....-...+ .+|.+.......+.+.- ..+...+..++-..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 46899999999999998886 99998887543222110 23332222111111100 00001111111111
Q ss_pred cCCCCCCCCCCccccccc---cccCc-cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccC
Q psy1545 204 TGGEKGPSLGPDWHTQVN---LHGSS-RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVV 274 (454)
Q Consensus 204 ~~~~~~~~l~~~~~~~~~---~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~ 274 (454)
..++--...-....+.++ +++.+ ...++.++.+ .|..+...++ .....|.+.+|..+.|+.||++||.-
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~-~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEG-QRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCC-CeEEEEEeCCCCeeecCEEEEeeccc
Confidence 111111111111222221 22222 4467888776 4555544331 23678899999999999999999974
No 455
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.80 E-value=0.026 Score=57.06 Aligned_cols=80 Identities=11% Similarity=0.133 Sum_probs=52.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccccccccccccccchhhhHHHHHhc-CcEEEcceEEEEe
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEG-LCTVIVDTVAAID 80 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~v~~i~ 80 (454)
..+++|+|+|..|+++|..|++. |++|+++|+..... + ....+.+.. +++++.+....
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~----------------~-~~~~~~l~~~~~~~~~~~~~~-- 63 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQ----------------L-KEALEELGELGIELVLGEYPE-- 63 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHH----------------H-HHHHHHHHhcCCEEEeCCcch--
Confidence 36799999999999999999998 89999998865210 0 111223333 55554332211
Q ss_pred CcccEEEeccCcEEEecEEEEecCCCCCCCCC
Q psy1545 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWY 112 (454)
Q Consensus 81 ~~~~~v~~~~g~~i~~d~lviAtG~~p~~~~~ 112 (454)
...-.+|.+|.++|..+..|.+
T Consensus 64 ----------~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 64 ----------EFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ----------hHhhcCCEEEECCCCCCCCHHH
Confidence 0112489999999987766644
No 456
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.78 E-value=0.054 Score=55.01 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=35.5
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEec--CC--cEEecCEEEEeecc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT--NG--HTHACDIVVSAIGV 273 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~--~g--~~~~~D~vi~a~G~ 273 (454)
.+..++.|+++++++.++++..++ ++...+... ++ ..+.++.||+|+|-
T Consensus 138 ~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 138 YRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCC
Confidence 344567899999999999988644 334445442 33 46889999999985
No 457
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.71 E-value=0.077 Score=55.94 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCeEEEEcCchhHHHHHHHhc---CCcEEEEEeCCCcc
Q psy1545 135 AKKIVVIGNGGIATELVHELS---NVDIVWVVKDKHIS 169 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~---g~~V~~i~~~~~~~ 169 (454)
.-+|+|||||+.|+-+|..|+ |.+|+++++.+...
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~ 69 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL 69 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC
Confidence 458999999999999999885 78999999887543
No 458
>PLN02785 Protein HOTHEAD
Probab=95.70 E-value=0.011 Score=61.38 Aligned_cols=34 Identities=29% Similarity=0.616 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.||+||||||.||+.+|.+|.+ ..+|+|||+++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~ 88 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV 88 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence 4899999999999999999998 479999999864
No 459
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=95.70 E-value=0.11 Score=53.24 Aligned_cols=48 Identities=19% Similarity=0.091 Sum_probs=36.3
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEecC---C--cEEecCEEEEeeccCcC
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTN---G--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~---g--~~~~~D~vi~a~G~~p~ 276 (454)
.++.|++++.+++|+++..+++ .+.+.+.+ | .++.++.||.|+|....
T Consensus 165 A~~~Ga~i~~~~~V~~i~~~~~---~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~ 217 (508)
T PRK12266 165 AAERGAEILTRTRVVSARRENG---LWHVTLEDTATGKRYTVRARALVNAAGPWVK 217 (508)
T ss_pred HHHcCCEEEcCcEEEEEEEeCC---EEEEEEEEcCCCCEEEEEcCEEEECCCccHH
Confidence 4667999999999999976542 34555543 4 36899999999998653
No 460
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.026 Score=52.53 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
+..|-|||||.||..||+.++++ |.+|.|+|-.+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~--Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKR--GVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHc--CCcEEEEEcccc
Confidence 56799999999999999999999 999999997754
No 461
>KOG2852|consensus
Probab=95.68 E-value=0.03 Score=51.21 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHhhcC----CCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLH----PGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~----~g~~v~lie~~~ 37 (454)
.+|+|+|||..|..+|+.|.+.. ....|+|+|+..
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 57999999999999999999872 126899999874
No 462
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=95.58 E-value=0.068 Score=53.91 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=35.9
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+..++.||+++.++ |..+..+.+ +....|.+++|.++++|++|=|+|++..
T Consensus 162 ~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 162 RHAEERGVEVIEGT-VVDVELDED-GRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECCCCEEEEeEEEECCCccch
Confidence 33366799999985 666655443 4466899999999999999999999764
No 463
>KOG0042|consensus
Probab=95.58 E-value=0.0053 Score=60.63 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=36.7
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCccccccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTK 44 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~~~~~~ 44 (454)
.+||+|||||..|..||.-.+.+ |+++.|+|++++..+...
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TR--GLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATR--GLKTALVEAGDFASGTSS 107 (680)
T ss_pred cccEEEECCCccCcceeehhhcc--cceeEEEecccccCCccc
Confidence 38999999999999999999998 999999999998765443
No 464
>KOG1238|consensus
Probab=95.57 E-value=0.013 Score=59.51 Aligned_cols=37 Identities=30% Similarity=0.515 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCcc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIV 39 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 39 (454)
.||.||||||.||...|.+|.+. |..+|.|+|++...
T Consensus 57 ~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 57 SYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred CCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 48999999999999999999996 78999999998765
No 465
>PLN02985 squalene monooxygenase
Probab=95.45 E-value=0.086 Score=54.07 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=29.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
..+++|||+|..|+-+|..|+ |.+|++++|.+.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 457999999999999999986 999999998753
No 466
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=95.32 E-value=0.069 Score=53.35 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=36.2
Q ss_pred cccCccCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCcC
Q psy1545 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 222 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p~ 276 (454)
+.+.+++.|+++++++.++++..++ +++..+... +| .++.++.||+|||--..
T Consensus 147 l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 147 LAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3455577899999999999998765 345556555 45 35789999999987654
No 467
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=95.31 E-value=0.025 Score=40.40 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=26.7
Q ss_pred EEcCchhHHHHHHHhc--CCcEEEEEeCCCccc
Q psy1545 140 VIGNGGIATELVHELS--NVDIVWVVKDKHISA 170 (454)
Q Consensus 140 VvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~ 170 (454)
|||+|.+|+-+|..|. +.+|+++++.+.+-.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 7999999999999997 899999999887643
No 468
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.28 E-value=0.12 Score=51.79 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=27.6
Q ss_pred CeEEEEcCchhHHHHHHHhc-CCcEEEEEeCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS-NVDIVWVVKDKH 167 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~-g~~V~~i~~~~~ 167 (454)
-.|+|||+|..|+-+|..+. |.+|.++++.+.
T Consensus 5 ~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~ 37 (433)
T PRK06175 5 ADVLIVGSGVAGLYSALNLRKDLKILMVSKGKL 37 (433)
T ss_pred ccEEEECchHHHHHHHHHhccCCCEEEEecCCC
Confidence 36999999999999998776 999999998654
No 469
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=95.09 E-value=0.11 Score=46.02 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=64.5
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
...++|||+|++|+-+|..|+ |.+|.+++++..+-....... ..+.+..-+ .+......+..+...+.-..-.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg--~lf~~iVVq---~~a~~iL~elgi~y~~~~~g~~ 91 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG--MLFNKIVVQ---EEADEILDELGIPYEEYGDGYY 91 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C--TT---EEEE---TTTHHHHHHHT---EE-SSEEE
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc--cccchhhhh---hhHHHHHHhCCceeEEeCCeEE
Confidence 467999999999999999997 999999998764432211110 000000000 0111112222222211000000
Q ss_pred CCcccc-ccccccCccCCceEEEeCceEEEEEcCCCCccceEEEec------CC-----cEEecCEEEEeeccCcCc
Q psy1545 213 GPDWHT-QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT------NG-----HTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 213 ~~~~~~-~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~------~g-----~~~~~D~vi~a~G~~p~~ 277 (454)
-.+-.. ...+....-+.|++++..+.++.+--.++ .+...+..+ .| -.+++..||-|||.....
T Consensus 92 v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 92 VADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp ES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred EEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 000000 00011222348999999999988764432 233344432 12 478999999999998754
No 470
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=95.04 E-value=0.016 Score=58.17 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=28.1
Q ss_pred EECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 7 IIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 7 IIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
|||+|.+|++||.++++. |.+|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~--Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA--GASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhC--CCcEEEEeCCCC
Confidence 799999999999999998 899999999874
No 471
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.99 E-value=0.096 Score=53.71 Aligned_cols=47 Identities=15% Similarity=0.015 Sum_probs=36.3
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCC----cEEecCEEEEeeccCcC
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g----~~~~~D~vi~a~G~~p~ 276 (454)
++.|++++.++.|.++..+++ .+.+.+.++ .++.++.||.|+|....
T Consensus 166 ~~~Ga~i~~~~~V~~i~~~~~---~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~ 216 (502)
T PRK13369 166 AERGATILTRTRCVSARREGG---LWRVETRDADGETRTVRARALVNAAGPWVT 216 (502)
T ss_pred HHCCCEEecCcEEEEEEEcCC---EEEEEEEeCCCCEEEEEecEEEECCCccHH
Confidence 568999999999999887652 355665554 35899999999997653
No 472
>KOG0404|consensus
Probab=94.98 E-value=0.1 Score=46.03 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=33.0
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
.+.|.++++. .|.++..... -+.+.. +.+.+.+|.||+|||.....
T Consensus 81 ~r~Gt~i~tE-tVskv~~ssk---pF~l~t-d~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 81 ERFGTEIITE-TVSKVDLSSK---PFKLWT-DARPVTADAVILATGASAKR 126 (322)
T ss_pred Hhhcceeeee-ehhhccccCC---CeEEEe-cCCceeeeeEEEecccceee
Confidence 4578888887 5677766542 455554 44579999999999987643
No 473
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.90 E-value=0.34 Score=49.20 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=34.1
Q ss_pred cCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcC
Q psy1545 224 GSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN 276 (454)
Q Consensus 224 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~ 276 (454)
+.+++.||+++.+ .+..+..++ +....+.. ++..+.++.||+|||-...
T Consensus 128 ~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 128 KHARELGVNFIRG-FAEELAIKN--GKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 4446689999876 677776433 22344444 5667999999999998664
No 474
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=94.87 E-value=0.16 Score=51.67 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=38.9
Q ss_pred cCCceEEEeCceEEEEEcCCCCccceEEE---ecCCc--EEecCEEEEeeccCcCcccccCCCCc
Q psy1545 227 RDTKITIEYSCEVERIVDSEDDTCNAYVK---LTNGH--THACDIVVSAIGVVPNSNIQVHGTPF 286 (454)
Q Consensus 227 ~~~gv~i~~~~~v~~i~~~~~~~~~~~v~---~~~g~--~~~~D~vi~a~G~~p~~~~~~~~~~l 286 (454)
+..|+++++++.|..++..++ ..+.+. ..++. ++.+|.||+|+|..... +++..|+
T Consensus 196 ~~~Gv~i~~~~~V~~I~~~~d--~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~--La~~~Gi 256 (497)
T PRK13339 196 SHPNAQVKYNHEVVDLERLSD--GGWEVTVKDRNTGEKREQVADYVFIGAGGGAIP--LLQKSGI 256 (497)
T ss_pred hCCCcEEEeCCEEEEEEECCC--CCEEEEEEecCCCceEEEEcCEEEECCCcchHH--HHHHcCC
Confidence 345899999999999986522 134454 23442 68999999999998754 5555544
No 475
>KOG2755|consensus
Probab=94.86 E-value=0.013 Score=52.67 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=23.5
Q ss_pred eEEEecCCcEEecCEEEEeeccCcCc
Q psy1545 252 AYVKLTNGHTHACDIVVSAIGVVPNS 277 (454)
Q Consensus 252 ~~v~~~~g~~~~~D~vi~a~G~~p~~ 277 (454)
..+++.+|..+.++.+++|+|++|..
T Consensus 81 hci~t~~g~~~ky~kKOG~tg~kPkl 106 (334)
T KOG2755|consen 81 HCIHTQNGEKLKYFKLCLCTGYKPKL 106 (334)
T ss_pred ceEEecCCceeeEEEEEEecCCCcce
Confidence 46888999999999999999999975
No 476
>KOG2614|consensus
Probab=94.74 E-value=0.17 Score=48.93 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=29.8
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
.+|+|||||..|+-.|..|. |.+|.+++.++.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R 38 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPR 38 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccc
Confidence 58999999999999999997 99999999865443
No 477
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=0.17 Score=50.07 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=28.7
Q ss_pred CeEEEEcCchhHHHHHHHhc-----CCcEEEEEeCCCccc
Q psy1545 136 KKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISA 170 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~-----g~~V~~i~~~~~~~~ 170 (454)
.+|+|||+|++|+.+|..|. ...++++++.+++-.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 57999999999999999885 223999998876653
No 478
>KOG3851|consensus
Probab=94.54 E-value=0.04 Score=51.11 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCcCcc
Q psy1545 237 CEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278 (454)
Q Consensus 237 ~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p~~~ 278 (454)
..|++++++++ +|.+.+|+++.+|++|+|+|..-+.+
T Consensus 112 ekv~~f~P~~N-----~v~t~gg~eIsYdylviA~Giql~y~ 148 (446)
T KOG3851|consen 112 EKVKEFNPDKN-----TVVTRGGEEISYDYLVIAMGIQLDYG 148 (446)
T ss_pred HHHHhcCCCcC-----eEEccCCcEEeeeeEeeeeeceeccc
Confidence 46777877763 68899999999999999999987765
No 479
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.53 E-value=0.22 Score=51.61 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=28.0
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKH 167 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~ 167 (454)
-.|+|||+|..|+-+|..++ |.+|.++++...
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 57999999999999998876 899999998654
No 480
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.44 E-value=0.056 Score=45.95 Aligned_cols=32 Identities=25% Similarity=0.228 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 4 dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
+|.|||||..|.++|..|++. +++|+|+.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccH
Confidence 589999999999999999998 89999999875
No 481
>KOG4254|consensus
Probab=94.43 E-value=0.028 Score=54.53 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=39.9
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeecc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~ 273 (454)
.+.+++.|-+|.++..|.+|.-++ +..+.|.+.||+++.+..|+.-++.
T Consensus 271 a~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 271 AEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred HHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCch
Confidence 455578999999999999998776 5688999999999998776655444
No 482
>KOG3855|consensus
Probab=94.26 E-value=0.061 Score=51.73 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHhhcC--CCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLH--PGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~--~g~~v~lie~~~~ 38 (454)
++||||+||||+|++.|..|.... ...++.|+|..+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 489999999999999999998542 1568999998843
No 483
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=94.24 E-value=0.35 Score=50.42 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=34.7
Q ss_pred CccCCceEEEeCceEEEEEcCCCCccceEEEe---cCCc--EEecCEEEEeeccCc
Q psy1545 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKL---TNGH--THACDIVVSAIGVVP 275 (454)
Q Consensus 225 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~---~~g~--~~~~D~vi~a~G~~p 275 (454)
.+++.||+++.++.++++..++ +....+.. .+|+ .+.++.||+|+|-..
T Consensus 138 ~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 138 QCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 3455699999999999987643 23333332 3563 589999999999644
No 484
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.19 E-value=0.05 Score=42.55 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=29.9
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|||||..|..-+..|.+. |.+|+++.++.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCch
Confidence 5799999999999999999998 89999998874
No 485
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.11 E-value=0.14 Score=49.26 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++|.|||.|..|++.|..|++. |++|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHH
Confidence 4799999999999999999999 999999998764
No 486
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.05 E-value=0.06 Score=55.79 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
.+||||||+|.||++||..+ +. |.+|+|+|+.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~--G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ER--GKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hc--CCCEEEEEccCC
Confidence 47999999999999999999 76 889999999764
No 487
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.03 E-value=0.45 Score=50.24 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=34.9
Q ss_pred ccCCceEEEeCceEEEEEcCCCCccceEEEec---CC--cEEecCEEEEeeccCc
Q psy1545 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---NG--HTHACDIVVSAIGVVP 275 (454)
Q Consensus 226 l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~---~g--~~~~~D~vi~a~G~~p 275 (454)
+++.||++++++.++++..++ +.+..+... +| ..+.++.||+|||--.
T Consensus 180 ~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 180 IAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 456799999999999987543 334445443 45 3689999999998743
No 488
>KOG3923|consensus
Probab=93.96 E-value=0.074 Score=48.92 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHhh-----cCCCCeEEEECCCCccc
Q psy1545 2 EFTYLIIGGGIAGVSCVEGLAF-----LHPGESIGLVTPSGIVK 40 (454)
Q Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~-----~~~g~~v~lie~~~~~~ 40 (454)
.++|+|||+|..|++.|..+.+ ..|..+|++++......
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~ 46 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTED 46 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccc
Confidence 5799999999999999988877 45678999998876543
No 489
>PTZ00367 squalene epoxidase; Provisional
Probab=93.93 E-value=0.14 Score=53.02 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=28.4
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDK 166 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~ 166 (454)
-+|+|||||+.|+-+|..|+ |.+|++++|.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 47999999999999999996 99999999875
No 490
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=93.93 E-value=0.071 Score=52.55 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=30.3
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCcc
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKDKHIS 169 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~ 169 (454)
++|+|||||..|+++|..|+ |.+|+++++++...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 58999999999999999996 99999999876653
No 491
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.92 E-value=0.4 Score=49.02 Aligned_cols=51 Identities=20% Similarity=0.040 Sum_probs=35.7
Q ss_pred cCccC-CceEEEeCceEEEEEcCCCCccceEEEecC-C--cEEecCEEEEeeccCcC
Q psy1545 224 GSSRD-TKITIEYSCEVERIVDSEDDTCNAYVKLTN-G--HTHACDIVVSAIGVVPN 276 (454)
Q Consensus 224 ~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~-g--~~~~~D~vi~a~G~~p~ 276 (454)
+.+++ .||+++.++.++++..++ +....+...+ + ..+.++.||+|+|-...
T Consensus 136 ~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 136 KKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 33344 699999999999987644 2233344433 3 46899999999998654
No 492
>PRK07121 hypothetical protein; Validated
Probab=93.84 E-value=0.44 Score=48.77 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=35.9
Q ss_pred ccCccCCceEEEeCceEEEEEcCCCCccceEEEec-CC--cEEec-CEEEEeeccCc
Q psy1545 223 HGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT-NG--HTHAC-DIVVSAIGVVP 275 (454)
Q Consensus 223 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~-~g--~~~~~-D~vi~a~G~~p 275 (454)
.+..++.|+++++++.++++..+++ ++...|... ++ ..+.+ +.||+|+|--.
T Consensus 184 ~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 184 AKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred HHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 3445678999999999999876432 234445443 33 35778 99999998543
No 493
>KOG2852|consensus
Probab=93.79 E-value=0.26 Score=45.33 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=27.0
Q ss_pred CCeEEEEcCchhHHHHHHHhc--C------CcEEEEEeCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--N------VDIVWVVKDK 166 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g------~~V~~i~~~~ 166 (454)
.++++|+|||.+|+..|..|. + ..+|+++.+.
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~ 49 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKE 49 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecc
Confidence 589999999999999999996 2 5789998643
No 494
>KOG2311|consensus
Probab=93.79 E-value=0.13 Score=50.45 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=25.9
Q ss_pred CeEEEEcCchhHHHHHHHhc--CCcEEEEEeC
Q psy1545 136 KKIVVIGNGGIATELVHELS--NVDIVWVVKD 165 (454)
Q Consensus 136 ~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~ 165 (454)
-.|+|||||..|+|.|.+.+ |++.+++..+
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 37999999999999998876 9999888753
No 495
>PLN02815 L-aspartate oxidase
Probab=93.73 E-value=0.076 Score=55.36 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=38.5
Q ss_pred CCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 290 ~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
..|+|.+|...||++||+||+|+|+.......+... -.....+.-.|+.|+.+++.
T Consensus 376 t~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~-gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 376 MCGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSID 431 (594)
T ss_pred eCCCeeECCCCceecCCEEecccccccCCCCCCcch-hhHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999853333322100 01234466678888887764
No 496
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.079 Score=49.77 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred CCeEEEEcCchhHHHHHHHhc--CCcEEEEEeCCCccccccCCcchhhhHHHhhccCCCChhhhhhhcccccCCCCCCCC
Q psy1545 135 AKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212 (454)
Q Consensus 135 ~~~vvVvG~G~~g~e~a~~l~--g~~V~~i~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 212 (454)
+-.++|||||+.|...|...+ |.+.-++. ++|-.+.+|..--+ +.......-
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IE------------------------NfIsv~~te 264 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIE------------------------NFISVPETE 264 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchh------------------------heecccccc
Confidence 568999999999988886654 65554442 12211111111100 001122222
Q ss_pred CCccccccccccCccCCceEEEeCceEEEEEcCCCCccceEEEecCCcEEecCEEEEeeccCc
Q psy1545 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVP 275 (454)
Q Consensus 213 ~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~D~vi~a~G~~p 275 (454)
+|.+... +.+..++..|.++...+.+++++.+..+....|++.+|..+++..+|++||.+-
T Consensus 265 Gpkl~~a--le~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW 325 (520)
T COG3634 265 GPKLAAA--LEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW 325 (520)
T ss_pred chHHHHH--HHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence 3333332 233446688999888888888875433457899999999999999999999864
No 497
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=93.66 E-value=0.074 Score=55.71 Aligned_cols=56 Identities=20% Similarity=0.087 Sum_probs=37.8
Q ss_pred cCCCceEeccccccccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 289 ~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
...|+|.+|...+|++|++||+|+|++. ..+++... -.....+.-.|+.||++++.
T Consensus 368 ~~~gG~~~d~~~~t~i~gL~a~Ge~~~~-~hg~nrl~-~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 368 YTMGGLWVDYDQMTNIPGLFAAGECDFS-QHGANRLG-ANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred eeCCCeeECCCCcccCCCEEECcccccC-cCCCccch-hHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999753 23222100 01123466677888877654
No 498
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.65 E-value=0.08 Score=47.92 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCCc
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~~ 38 (454)
++++|||+|..|.+.|..|.+. |++|++||+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHH
Confidence 3799999999999999999998 999999999764
No 499
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=93.65 E-value=0.064 Score=56.73 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=38.1
Q ss_pred cCCCceEecccccc-ccCceeecCcccccCCccccchhhccChHHHHHHHHHHHhhhcC
Q psy1545 289 APDCGIGVNELMQT-SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346 (454)
Q Consensus 289 ~~~g~i~vd~~~~t-~~~~Iya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~~ 346 (454)
...|+|.||...|| ++|++||+|+|+.......+.... .....+.-.|+.|+++++.
T Consensus 370 ytmGGi~vd~~~~t~~I~GLyAaGE~a~~g~hGanrlgg-nsl~~~~v~G~iAg~~aa~ 427 (657)
T PRK08626 370 YSMGGIRTNPTGESYGLKGLFSAGEAACWDMHGFNRLGG-NSLAETVVAGMIVGKYVAD 427 (657)
T ss_pred EecCCceECCCCCCcccCCEEecccccccCCCCCCccch-HHHHHHHHHHHHHHHHHHH
Confidence 34689999999999 599999999998643333221000 1123466678888877764
No 500
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.56 E-value=0.11 Score=46.16 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHhhcCCCCeEEEECCCC
Q psy1545 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG 37 (454)
Q Consensus 3 ~dvvIIGgG~aGl~aA~~l~~~~~g~~v~lie~~~ 37 (454)
.+++|||||..|...+..|.+. |.+|+|++++.
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence 5799999999999999999998 89999998864
Done!