RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1545
(454 letters)
>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 104 bits (262), Expect = 6e-24
Identities = 117/475 (24%), Positives = 170/475 (35%), Gaps = 113/475 (23%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTK-LLSDI-----TVEE 59
+IIG G+AG +E L L + +T V + LLS + T E+
Sbjct: 7 VIIGNGMAGHRTIEEL--LESAPDLYDIT----VFGEEPRPNYNRILLSSVLAGEKTAED 60
Query: 60 TDANKFE-----GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY-- 112
N+ + G+ + V ID V T+ + Y L I TG+ P +
Sbjct: 61 ISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPG 120
Query: 113 --SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVVKDKHIS 169
P V R D V + + ++ KK VVIG G + E L ++ + V VV HI+
Sbjct: 121 SDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVV---HIA 177
Query: 170 ATF----LDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGS 225
T LD A + + LG + N
Sbjct: 178 PTLMERQLDRTAGRLLRRKLED------------------------LGIKVLLEKN---- 209
Query: 226 SRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTP 285
E IV ED V+ +G D+VV A+G+ PN
Sbjct: 210 -------------TEEIVG-EDKVEG--VRFADGTEIPADLVVMAVGIRPND-------- 245
Query: 286 FELAPDCGIGVNE------LMQTSISNVYAAGDVCTPSWDLAKQWFQMR------LWTQA 333
ELA + G+ VN MQTS ++YA G+ + L+ QA
Sbjct: 246 -ELAKEAGLAVNRGIVVNDYMQTSDPDIYAVGECA--------EHRGKVYGLVAPLYEQA 296
Query: 334 KHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLR 393
K A + G T + K G V G F E I+ R
Sbjct: 297 K----VLADHLCGGEAEAYEGSV----TSTKL-KVSGVDVFSAGDFQET--EGAESIVFR 345
Query: 394 VTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPNID 448
+ Y KLV+KD ++ GAVL G+T +LIL D+++I D L+ P
Sbjct: 346 DEQRGIYKKLVLKDDKIVGAVLYGDTSDGGWLLDLILKGADISEIRDTLILPQGS 400
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 98.1 bits (244), Expect = 3e-22
Identities = 82/430 (19%), Positives = 141/430 (32%), Gaps = 60/430 (13%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVK----AVTKTVPVTKLLSDITVEET 60
+I+GGG AG+S L L I L+ ++ V +
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60
Query: 61 DANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRK--IWYSPHVIT 118
N+ G+ V +IDP V+ + I+Y L + TGA PR I V+T
Sbjct: 61 RFNRATGIDVRTGTEVTSIDPENKVVLLDD-GEIEYDYLVLATGARPRPPPISDWEGVVT 119
Query: 119 IRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHEL--SNVDIVWVVKDKHISATFLDPG 176
+R + L+ + K +VV+G G I E + + + LDP
Sbjct: 120 LRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPE 179
Query: 177 AAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYS 236
AE + + + +
Sbjct: 180 VAEELA---------------ELLEKY--------------------------GVELLLG 198
Query: 237 CEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGV 296
+V + + V +G D+V+ G PN + P + V
Sbjct: 199 TKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLV 258
Query: 297 NELMQTS-ISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ 355
+E TS +VYAAGDV + ++ LW A G AA+ + GA++ ++
Sbjct: 259 DERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGALRIPGLLG 318
Query: 356 DFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQGAVL 415
GL G E +++L V+ G++ + + G L
Sbjct: 319 TVIS-------DVGDLCAASTGLTEG--KERGIDVVLVVSGGKDPRAHLYPGAELVGIKL 369
Query: 416 IGETEIEEMC 425
+G+ + +
Sbjct: 370 VGDADTGRIL 379
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 94.7 bits (236), Expect = 6e-22
Identities = 77/332 (23%), Positives = 114/332 (34%), Gaps = 72/332 (21%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG--------IVKAV------TKTVPVTK 50
+IIGGG AG++ LA G + L+ G + K + + +
Sbjct: 2 VVIIGGGPAGLAAAIRLA--RLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGL 59
Query: 51 LLSDITVEETDANKFEGLCTVIVDTVAAIDP---RVNCVITEKQNRIKYKTLCICTGASP 107
L + +E G V ID V E I Y L I TGA P
Sbjct: 60 ALPEEVYKEFGVEVLLG------TEVVDIDRGEKTVVLKDVETGREITYDKLIIATGARP 113
Query: 108 RKIWYS-PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVK 164
R V T+R + E L+ K++VV+G G I EL L+ ++ V +
Sbjct: 114 RIPGIPGVEVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGKEVTVVER 173
Query: 165 DKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHG 224
+ A D +A + K + G
Sbjct: 174 RDRLLARADDEISAALLE---------------KLEKLLLGVTVL--------------- 203
Query: 225 SSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT 284
V +V D VKL +G D+V+ AIG PN+ + +
Sbjct: 204 -------------LVVVVVVKVGDGKVVEVKLGDGEELDADVVLVAIGRRPNTEL-LEQA 249
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCTP 316
EL I V+E ++TS+ +YAAGDV
Sbjct: 250 GVELDERGYIVVDEYLRTSVPGIYAAGDVAEG 281
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 76.1 bits (188), Expect = 7e-15
Identities = 83/391 (21%), Positives = 122/391 (31%), Gaps = 104/391 (26%)
Query: 1 MEFTYLIIGGGIAG-----------------------------VSCVEGLAFLHPGESI- 30
E+ ++IG G AG V C+ A LH E I
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIE 62
Query: 31 --GLVTPSGIVKAVTKTVPVTKLLSDI-TVEETDANKFEGL-----CTVIVDTVAAIDPR 82
+ A + KLL+ V EGL VI +DP
Sbjct: 63 EARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPH 122
Query: 83 VNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVLQEKLKSAKKI 138
V E + I + I TG+ PR ++ D A+ +L K +
Sbjct: 123 TVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSD----ALFLLELP--KSL 176
Query: 139 VVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETI 196
V++G G I E + + V + I DP ++ + K
Sbjct: 177 VIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE-DPEISKELTKQLEK--------- 226
Query: 197 FKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKL 256
GG K +TK+T + +V ED
Sbjct: 227 --------GGVK-------ILL---------NTKVTAVEKKDDGVLVTLEDGE------- 255
Query: 257 TNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
G T D V+ AIG PN+ + + EL I V++ M T++ +YA GDV
Sbjct: 256 --GGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIG 313
Query: 316 PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
LA A G AA+ + G
Sbjct: 314 G-PMLA---------HVAMAEGRIAAENIAG 334
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 71.9 bits (177), Expect = 1e-13
Identities = 50/249 (20%), Positives = 93/249 (37%), Gaps = 68/249 (27%)
Query: 76 VAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSP------HVITIRDTDSVAVLQ 129
V ID V + + N+ +Y L + TGAS + P ++T+ +
Sbjct: 81 VTDIDAEAQVVKS-QGNQWQYDKLVLATGASA----FVPPIPGRELMLTLNSQQEYRAAE 135
Query: 130 EKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTN 189
+L+ A++++V+G G I TEL +L K + T +D A+
Sbjct: 136 TQLRDAQRVLVVGGGLIGTELAMDLCR-------AGKAV--TLVDNAASLL--------- 177
Query: 190 TAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDT 249
SL P + L + + + +++ + ++
Sbjct: 178 --------------------ASLMPPEVSS-RLQHRLTEMGVHLLLKSQLQGLEKTDSGI 216
Query: 250 CNAYVKLTNGHTHACDIVVSAIGVVPN------SNIQVHGTPFELAPDCGIGVNELMQTS 303
L +G + D V++A G+ PN + + V+ GI V+ +QTS
Sbjct: 217 R---ATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR---------GIVVDSYLQTS 264
Query: 304 ISNVYAAGD 312
++YA GD
Sbjct: 265 APDIYALGD 273
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol [Cellular processes, Detoxification].
Length = 427
Score = 70.5 bits (173), Expect = 3e-13
Identities = 75/327 (22%), Positives = 117/327 (35%), Gaps = 88/327 (26%)
Query: 76 VAAIDPRVNCVI-----TEKQNRIKYKTLCICTGASPRKI----WYSPHVITIR---DTD 123
V ++ V+ T + Y L + GASP V T+R DTD
Sbjct: 67 VIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTD 126
Query: 124 SVAVLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFF 181
++ +K + +V+IG G I E+ L ++ + + + I D +
Sbjct: 127 AIKQYIDK-NKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIV 185
Query: 182 QDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVER 241
++ + K +NL + EV+
Sbjct: 186 EEELKKHE------------------------------INLR-----------LNEEVDS 204
Query: 242 IVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG-------- 293
I E T+G + D+V+ A G+ PNS ELA D G
Sbjct: 205 IEGEE-----RVKVFTSGGVYQADMVILATGIKPNS---------ELAKDSGLKLGETGA 250
Query: 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPV 353
I VNE QTS+ N+YAAGDV + K+ + L A MG A + + G
Sbjct: 251 IWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAG------- 303
Query: 354 IQDFSFEMF--THMTKFFGYKVILLGL 378
D F+ T++TKFF + G+
Sbjct: 304 -NDIEFKGVLGTNITKFFDLTIASTGV 329
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit. [Central intermediary metabolism, Nitrogen
metabolism].
Length = 785
Score = 68.3 bits (167), Expect = 3e-12
Identities = 103/454 (22%), Positives = 163/454 (35%), Gaps = 99/454 (21%)
Query: 7 IIGGGIAGVSCVEGLAFLHPGE-SIGLVTPSGIVKAVTKTVPVTKLLS------DITVEE 59
++G G+AG C+E + L+ I + + ++ +L DIT+
Sbjct: 3 LVGNGMAGHRCIEEVLKLNRHMFEITIFGEEP--HPNYNRILLSSVLQGEADLDDITLNS 60
Query: 60 TDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSP----- 114
D + G+ +TV ID VIT+ + Y L + TG+ P + P
Sbjct: 61 KDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYP---FILPIPGAD 117
Query: 115 ----HVI-TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVVK-DKH 167
+V TI D D+ + + KK VIG G + E L N+ + V V+
Sbjct: 118 KKGVYVFRTIEDLDA---IMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG 174
Query: 168 ISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSR 227
+ A LD A Q + + G + + +
Sbjct: 175 LMAKQLDQTAGRLLQRELEQ------------------------KGLTFLLEKDTVEIVG 210
Query: 228 DTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFE 287
TK +RI + +G + D++V A G+ PN E
Sbjct: 211 ATK--------ADRI------------RFKDGSSLEADLIVMAAGIRPND---------E 241
Query: 288 LAPDCGIGV------NELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAA 341
LA GI V N+ MQTS ++YA G+ + L+ QAK A
Sbjct: 242 LAVSAGIKVNRGIIVNDSMQTSDPDIYAVGECA--EHNGRVYGLVAPLYEQAK----VLA 295
Query: 342 KCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYI 401
+ G E D S ++ K G V G E I + + Y
Sbjct: 296 DHICGVECEEYEGSDLSAKL-----KLLGVDVWSAGDAQET--ERTTSIKIYDEQKGIYK 348
Query: 402 KLVMKDGRMQGAVLIGETEIEEMCENLILNQLDL 435
KLV+ D ++ GAVL G+T +++L Q D+
Sbjct: 349 KLVLSDDKLLGAVLFGDTSDYGRLLDMVLKQADI 382
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 63.0 bits (153), Expect = 9e-11
Identities = 56/279 (20%), Positives = 93/279 (33%), Gaps = 57/279 (20%)
Query: 75 TVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVLQE 130
T+ + ++ + L I TGA+ R + T+R A L+E
Sbjct: 80 TIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLRE 139
Query: 131 KLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190
L+ + +V++G G I EL AA Q T
Sbjct: 140 VLQPERSVVIVGAGTIGLEL--------------------------AASATQRRCKVTVI 173
Query: 191 AKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTC 250
T+ G P + + H + + I + +E +VD E
Sbjct: 174 ELAATVM--------GRNAPPPVQRY--LLQRH---QQAGVRILLNNAIEHVVDGEK--- 217
Query: 251 NAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAA 310
+ L +G T D+V+ IG+ N + L GI ++E +T ++A
Sbjct: 218 -VELTLQSGETLQADVVIYGIGISANDQLAREAN---LDTANGIVIDEACRTCDPAIFAG 273
Query: 311 GDVC---TPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
GDV + L + W A + AA M+G
Sbjct: 274 GDVAITRLDNGALHRC----ESWENANNQAQIAAAAMLG 308
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 62.9 bits (153), Expect = 1e-10
Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 62/251 (24%)
Query: 76 VAAIDPRVNCV-----ITEKQNRIKYKTLCICTGASPRKIWY-SPHVITIR---DTDSVA 126
V AI+ V T +Q Y L + GAS + + S T+R DTD++
Sbjct: 81 VIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAID 140
Query: 127 VLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDS 184
+ + K +V+G G I+ E++ L + + + I+ +
Sbjct: 141 QFIKANQ-VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN---------KLMDAD 190
Query: 185 INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVD 244
+N+ I + +I + E++ I
Sbjct: 191 MNQP-------ILDELD--------------------------KREIPYRLNEEIDAING 217
Query: 245 SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSI 304
+E V +G D+++ +G PNS + + +L I VN+ +T++
Sbjct: 218 NE-------VTFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDDKGFIPVNDKFETNV 269
Query: 305 SNVYAAGDVCT 315
N+YA GD+ T
Sbjct: 270 PNIYAIGDIIT 280
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 60.1 bits (146), Expect = 1e-09
Identities = 57/250 (22%), Positives = 88/250 (35%), Gaps = 67/250 (26%)
Query: 88 TEKQNRIKYKTLCICTGASPRKIWYSP--------HVITIRDTDSVAVLQEKLK--SAKK 137
T Y L I TGA P P +V T++ + L+E LK K
Sbjct: 96 TGSIFNDTYDKLMIATGARP----IIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKN 151
Query: 138 IVVIGNGGIATELVHEL----SNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
IV+IG G I E V NV I+ + I D + ++ + +
Sbjct: 152 IVIIGAGFIGLEAVEAAKHLGKNVRIIQ--LEDRILPDSFDKEITDVMEEELRENG---- 205
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
V LH + V+ + ED
Sbjct: 206 --------------------------VELH-----------LNEFVKSL-IGED---KVE 224
Query: 254 VKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+T+ + D+V+ A GV PN+ + T + + I V+E +TSI N+YAAGD
Sbjct: 225 GVVTDKGEYEADVVIVATGVKPNTEF-LEDTGLKTLKNGAIIVDEYGETSIENIYAAGD- 282
Query: 314 CTPSWDLAKQ 323
C +++
Sbjct: 283 CATIYNIVSN 292
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 53.5 bits (129), Expect = 7e-08
Identities = 70/341 (20%), Positives = 111/341 (32%), Gaps = 98/341 (28%)
Query: 6 LIIGGGIAGVSC--------------VEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKL 51
+IIGGG AG++ +EG PG + T + +L
Sbjct: 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGGE---PGGQLTKTTDVENYPGFPGGILGPEL 63
Query: 52 LSDITVEETDANKFEGLCTVIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRK 109
+ + + A KF ++ D V ++ V T+K + K + I TGA RK
Sbjct: 64 MEQM---KEQAEKFG--VEIVEDEVEKVELEGGPFKVKTDK-GTYEAKAVIIATGAGARK 117
Query: 110 I--------W-YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIV 160
+ D K +VVIG G V E
Sbjct: 118 LGVPGEEEFEGKGVSYCATCDGFFKG---------KDVVVIGGG---DSAVEE------- 158
Query: 161 WVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQV 220
A +L + AK T+ R +
Sbjct: 159 ---------ALYL--------------SKIAKKVTLVHR---------RDEFRAEEILVE 186
Query: 221 NLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGVVPN 276
L ++ KI + + V+ I+ + + V L N D V AIG +PN
Sbjct: 187 RLK---KNVKIEVLTNTVVKEILGDDVEG----VVLKNVKGEEKELPVDGVFIAIGHLPN 239
Query: 277 SNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPS 317
+ + L + I V+E M+TS+ ++AAGDV +
Sbjct: 240 TELLKGLG--VLDENGYIVVDEEMETSVPGIFAAGDVADKN 278
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 54.0 bits (131), Expect = 8e-08
Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 49/182 (26%)
Query: 136 KKIVVIGNGGIATEL---VHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAK 192
K++ V+G G IA E ++ L + V+ F DP E + + K
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAPLRGF-DPDIRETLVEEMEK----- 220
Query: 193 PETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNA 252
KG L HT + + + D +
Sbjct: 221 ---------------KGIRL----HTN-----------------AVPKAVEKNADGSLT- 243
Query: 253 YVKLTNGHTHACDIVVSAIGVVPN-SNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+ L +G T D ++ AIG PN + + +L I V+E T++ +YA G
Sbjct: 244 -LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVG 302
Query: 312 DV 313
DV
Sbjct: 303 DV 304
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the E3
component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to have
distinct functions (ferric leghemoglobin reductase and
NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 53.4 bits (129), Expect = 1e-07
Identities = 60/288 (20%), Positives = 100/288 (34%), Gaps = 62/288 (21%)
Query: 70 TVIVDTVAAIDPRVNCVITEK-QNRIKYKTLCICTGASPRKI--WYSPHVITIRDTDSVA 126
TVI +DP V E + ++ K + I TG+ PR + + + +
Sbjct: 105 TVIKGEAKFLDPGTVSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGAL 164
Query: 127 VLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDS 184
L+E +S +V+IG G I E ++ + + I D ++ Q +
Sbjct: 165 NLEEVPES---LVIIGGGVIGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKA 220
Query: 185 INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVD 244
+ K K ++ T T+V D ++T E
Sbjct: 221 LKK----------KGVKILTN------------TKV-TAVEKNDDQVTYE-------NKG 250
Query: 245 SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN-SNIQVHGTPFELAPDCGIGVNELMQTS 303
E +T + V+ A+G PN + + EL I V+E M+T+
Sbjct: 251 GETETLTG------------EKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYMRTN 298
Query: 304 ISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNE 351
+ +YA GDV LA A H G AA+ + G
Sbjct: 299 VPGIYAIGDV-IGGPMLAH---------VASHEGIVAAENIAGKEPAH 336
>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 51.9 bits (125), Expect = 3e-07
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 265 DIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT-PS 317
D VV AIG +P EL I V+E TS V+AAGDV T PS
Sbjct: 276 DTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPS 329
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 48.6 bits (117), Expect = 3e-06
Identities = 54/229 (23%), Positives = 80/229 (34%), Gaps = 57/229 (24%)
Query: 93 RIKYKTLCICTGASPRKI---WY--SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIA 147
RI+ K + I TG+ I W ++T +D L + KS + VIG G I
Sbjct: 128 RIEAKNIVIATGSRVPPIPGVWLILGDRLLT---SDDAFELDKLPKS---LAVIGGGVIG 181
Query: 148 TELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTG 205
EL LS V + + I DP ++ Q ++K
Sbjct: 182 LELGQALSRLGVKVTVFERGDRI-LPLEDPEVSKQAQKILSK------------------ 222
Query: 206 GEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACD 265
+ I+ +V + S D+ K T D
Sbjct: 223 ------------------------EFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEAD 258
Query: 266 IVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
V+ A G PN+ + + T EL V+E QTS+ +YAAGDV
Sbjct: 259 YVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDV 307
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 48.6 bits (117), Expect = 4e-06
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL-MQTSISNVYAAGDVCT 315
T D+V+ AIG PN I EL I ++ +TS+ V+A GD+ T
Sbjct: 372 FTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVT 428
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 47.4 bits (113), Expect = 9e-06
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPN-SNIQVHGTPFELA 289
IT + + + D + +T T+ D ++ A G PN + + T EL
Sbjct: 213 ITFLLNAHTTEVKNDGDQV----LVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELT 268
Query: 290 PDCGIGVNELMQTSISNVYAAGDV 313
I V++ QTS+ V+A GDV
Sbjct: 269 ERGAIKVDDYCQTSVPGVFAVGDV 292
>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 46.1 bits (109), Expect = 3e-05
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 253 YVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTSISNVYAAG 311
+V +G T D+V+ AIG VP + +Q+ EL I V+E +T++ N+YA G
Sbjct: 266 HVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIG 325
Query: 312 DV 313
DV
Sbjct: 326 DV 327
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 45.5 bits (108), Expect = 4e-05
Identities = 66/321 (20%), Positives = 110/321 (34%), Gaps = 62/321 (19%)
Query: 7 IIGGGIAGVSCVEGLAFLHPGESIGLV--TPSGIVKAVTKTVPVTKLLSDI--TVEETDA 62
+GG V CV L E P G + A T V +LL VEE
Sbjct: 33 PLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAA-TVAVDFGELLEGKREVVEELRH 91
Query: 63 NKFEGLCT-----VIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVI 117
K+E + + + DP+ V + K I TGA P P +
Sbjct: 92 EKYEDVLSSYGVDYLRGRARFKDPKTVKV-DLGREVRGAKRFLIATGARPAI----PPIP 146
Query: 118 TIRDTD---SVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVVKDKHISATFL 173
+++ S L + + + VIG G I EL + + V +++
Sbjct: 147 GLKEAGYLTSEEALALD-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE 205
Query: 174 DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
+P + ++++ E+G + T + S
Sbjct: 206 EPEISAAVEEALA--------------------EEGIEV----VTSAQVKAVSVRGGG-- 239
Query: 234 EYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDC 292
+I+ E G A +++V A G PN++ + + +L
Sbjct: 240 -------KIITVE-------KPGGQGEVEADELLV-ATGRRPNTDGLGLEKAGVKLDERG 284
Query: 293 GIGVNELMQTSISNVYAAGDV 313
GI V+E ++TS +YAAGDV
Sbjct: 285 GILVDETLRTSNPGIYAAGDV 305
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 44.6 bits (106), Expect = 8e-05
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 240 ERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNE 298
+V D ++L +G T D+++ A G VPN + + ++ D + V+E
Sbjct: 227 RNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286
Query: 299 LMQTSISNVYAAGDVCTP 316
+TS V+A GDV +P
Sbjct: 287 YQRTSAEGVFALGDVSSP 304
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 44.4 bits (106), Expect = 8e-05
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS---NIQVHGTPFE 287
I + + E R+ D ++ A+G VPN+ ++ G E
Sbjct: 227 IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGV--E 284
Query: 288 LAPDCGIGVNELMQTSISNVYAAGDVC 314
I V++ ++T+ +YAAGD
Sbjct: 285 TDARGYIKVDDQLRTTNPGIYAAGDCN 311
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 43.2 bits (103), Expect = 2e-04
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS---NIQVHG 283
RD+ +TI ++ EVE++ +D V L +G D ++ A G N+ N++ G
Sbjct: 227 RDSGVTIRHNEEVEKVEGGDDGV---IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAG 283
Query: 284 TPFELAPDC-G-IGVNELMQTSISNVYAAGDV 313
L D G + VNE QT++ ++YA GDV
Sbjct: 284 ----LEADSRGQLKVNENYQTAVPHIYAVGDV 311
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 42.4 bits (100), Expect = 3e-04
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 242 IVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELM 300
+ E D + L +G T D+++ A G VPN + + E+ D I V+E
Sbjct: 232 VTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG 291
Query: 301 QTSISNVYAAGDVCTP 316
+TS V+A GDV +P
Sbjct: 292 RTSARGVWALGDVSSP 307
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 41.4 bits (98), Expect = 7e-04
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYV-KLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFEL 288
+ I ++ I AY T D ++ +IG VPN+ + + +L
Sbjct: 239 LDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKL 298
Query: 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG 346
I V++ +T++ NVYA GDV LA +A+ G A+ + G
Sbjct: 299 DERGFIPVDDHCRTNVPNVYAIGDV-VRGPMLAH---------KAEEEGVAVAERIAG 346
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 41.0 bits (96), Expect = 0.001
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
D V+ AIG N I T + + I V+E +TSI V+A GD+
Sbjct: 372 CKLEADAVIVAIGNGSNP-IMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424
>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(pfam00070) [Energy metabolism, Electron transport].
Length = 299
Score = 40.7 bits (96), Expect = 0.001
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTH-----ACDIVVSAIGVVPNSNIQVHGT 284
KI ++ V+ IV D+ VK+ N T D V AIG PN+ +
Sbjct: 190 KIEFLWNSTVKEIV--GDNKVEG-VKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKG-- 244
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVC 314
EL + I +E M+TS+ V+AAGDV
Sbjct: 245 LLELDENGYIVTDEGMRTSVPGVFAAGDVR 274
Score = 29.1 bits (66), Expect = 4.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 71 VIVDTVAAIDPRVN--CVITEKQNRIKYKTLCICTGASPRKI 110
+I + V +D V T K + I TGAS RK+
Sbjct: 73 IIYEEVIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASARKL 114
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 40.5 bits (95), Expect = 0.002
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 265 DIVVSAIGVVPNSNIQVHGTPFELA----PDCGIGVNELMQTSISNVYAAGDV 313
+ V+ ++G P +V E A + GI VNE MQT++ ++YA GDV
Sbjct: 258 EFVLVSVGRKP----RVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDV 306
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 39.7 bits (93), Expect = 0.003
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 264 CDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
D+V+ ++GV PN + EL I V+E MQ+SI +YA GD+
Sbjct: 675 VDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVR 726
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 39.2 bits (92), Expect = 0.003
Identities = 63/230 (27%), Positives = 92/230 (40%), Gaps = 47/230 (20%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHA--CDIVVSAIGVVPNSNIQVHG----- 283
+ I +VE I D+ V +G D V+ AIG P V G
Sbjct: 228 VKILTGTKVESIDDN-GSKVTVTVSKKDGKAQELEADKVLQAIGFAPR----VEGYGLEK 282
Query: 284 TPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKC 343
T L I +++ M+T++ ++YA GDV AK ++L A+ G AA+
Sbjct: 283 TGVALTDRGAIAIDDYMRTNVPHIYAIGDVT------AK----LQLAHVAEAQGVVAAET 332
Query: 344 MVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEIL------------ 391
+ GA E + D + M T F +V GL Q E Y++
Sbjct: 333 IAGAETLE--LGD--YRMMPRAT-FCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKA 387
Query: 392 --LRVTRGEEYIKLVM--KDGRMQGAVLIGETEIEEMCENLILNQL-DLT 436
L G ++KLV K G + G LIG ++ E+ L L Q DLT
Sbjct: 388 HGLGDPTG--FVKLVADAKYGELLGGHLIGP-DVSELLPELTLAQKWDLT 434
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 38.4 bits (90), Expect = 0.005
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 11/109 (10%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSG-------IVKAVTKTVPVTKLLSDITVE 58
+I+GGG G+S + LA P I LV + + T T+ +++ +
Sbjct: 7 VILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPL--- 63
Query: 59 ETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107
K + + V ID V I Y L + G+
Sbjct: 64 RALLRKSGNV-QFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGSET 111
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 38.2 bits (90), Expect = 0.008
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 265 DIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
D V+ A+G PN+ N+ + + I V+E ++T++ N+YA GD+
Sbjct: 262 DYVLVAVGRRPNTENLGLEELGVKTDRGF-IEVDEQLRTNVPNIYAIGDI 310
Score = 28.6 bits (65), Expect = 8.8
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 23/76 (30%)
Query: 86 VITEKQNR-IKYKTLCICTGASP----------RKIWYSPHVITIRDTDSVAVLQEKLKS 134
V+TE + K + + TG+ P R IW S + + D V
Sbjct: 124 VMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWTSDEALNL---DEVP-------- 172
Query: 135 AKKIVVIGNGGIATEL 150
K +VVIG G I E
Sbjct: 173 -KSLVVIGGGYIGVEF 187
>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 37.9 bits (88), Expect = 0.009
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 254 VKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
V +G D+V+ A G PN+ + + EL + V+E +T+I +++A GD
Sbjct: 279 VITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGD 338
Query: 313 VCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFEMF 362
V ++ L A GT AK + G +P ++ + +F
Sbjct: 339 VTN----------RINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVF 378
>gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.
Length = 847
Score = 38.2 bits (89), Expect = 0.009
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 32/191 (16%)
Query: 265 DIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQW 324
D +V + G+ P + +AP GI +N+ QTS ++YA G+ C SW+ +
Sbjct: 235 DFIVFSTGIRPQDKL-ATQCGLAVAPRGGIVINDSCQTSDPDIYAIGE-CA-SWN--NRV 289
Query: 325 FQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQ--DFSFEMFTHMTKFFGYKVILLGLFNGQ 382
F L M A ++G +E + D S ++ K G V +G +G+
Sbjct: 290 FG--LVAPGYKMAQVAVDHLLG---SENAFEGADLSAKL-----KLLGVDVGGIGDAHGR 339
Query: 383 T--------LENDYEILLRVTRGEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLD 434
T L+ EI R+ E+ L+ GAVL+G+T L+LN ++
Sbjct: 340 TPGARSYVYLDESKEIYKRLIVSEDNKTLL-------GAVLVGDTSDYGNLLQLVLNAIE 392
Query: 435 LTDIADDLLNP 445
L + D L+ P
Sbjct: 393 LPENPDSLILP 403
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 37.3 bits (87), Expect = 0.013
Identities = 38/257 (14%), Positives = 79/257 (30%), Gaps = 55/257 (21%)
Query: 70 TVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWY---SPHVITIRDTDSVA 126
++ IDP V+ + + Y L + G++ + + ++ ++
Sbjct: 70 RFVIAEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFL 129
Query: 127 ----VLQEKLK---SAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAE 179
L E K++ V+G G E+ L + + L
Sbjct: 130 ARWEALLESADAPPGTKRLAVVGGGAAGVEIALALR----------RRLPKRGLRGQVTL 179
Query: 180 FFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEV 239
S+ AK + R+ G + +H + T+
Sbjct: 180 IAGASLLPGFPAKVRRLVLRLLARRG--------------IEVHEGAPVTRGP------D 219
Query: 240 ERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNEL 299
++ ++ T A D ++ A G + + L D + V+
Sbjct: 220 GALILADGRTLPA------------DAILWATGARA-PPW-LAESGLPLDEDGFLRVDPT 265
Query: 300 MQT-SISNVYAAGDVCT 315
+Q+ S +V+AAGD
Sbjct: 266 LQSLSHPHVFAAGDCAV 282
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 36.7 bits (85), Expect = 0.022
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 256 LTNGH-THACDIVVSAIGVVPN-SNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
LT GH D ++ A G PN ++ + + I +++ M+TS+ ++YAAGD
Sbjct: 345 LTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGD- 403
Query: 314 CT 315
CT
Sbjct: 404 CT 405
>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria [Energy metabolism,
Electron transport].
Length = 446
Score = 35.9 bits (83), Expect = 0.034
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 245 SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN-IQVHGTPFELAPDCGIGVNELMQTS 303
S+DD L+ D+V+ A G PN+N + + L I V+E +TS
Sbjct: 234 SKDDDGRLKATLSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGAIAVDEYSRTS 293
Query: 304 ISNVYAAGDV 313
++YA GDV
Sbjct: 294 TPSIYAVGDV 303
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 35.9 bits (83), Expect = 0.045
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVT 34
M F IIGGG+AG++C GLA G+ +V
Sbjct: 1 MNFDVAIIGGGLAGLTC--GLALQQAGKRCAIVN 32
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 35.2 bits (81), Expect = 0.071
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 51/218 (23%)
Query: 101 ICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVD 158
I TG P P D+D L+E K++V++G G IA EL L +
Sbjct: 135 IATGGKPSFPENIPGAELGTDSDGFFALEEL---PKRVVIVGAGYIAVELAGVLHGLGSE 191
Query: 159 IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218
V++ + + +F DS+ ETI + G
Sbjct: 192 THLVIRHERVLRSF----------DSMIS------ETITEEYE-KEG------------- 221
Query: 219 QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-HACDIVVSAIGVVPNS 277
+N+H S+ K VE+ V+ + + +G + D ++ AIG PN+
Sbjct: 222 -INVHKLSKPVK--------VEKTVEGKL-----VIHFEDGKSIDDVDELIWAIGRKPNT 267
Query: 278 -NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC 314
+ + +L I V+E T++ +YA GDV
Sbjct: 268 KGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVV 305
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 35.3 bits (81), Expect = 0.072
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 251 NAYVKLTNGHTHACDIVVSAIGVVPNS---NIQVHGTPFELAPDCGIGVNELMQTSISNV 307
++ TN T + ++ A G PN+ N++ G E I ++E +QT++S +
Sbjct: 249 REFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERG---AIRIDEHLQTTVSGI 305
Query: 308 YAAGDVCT 315
YAAGD CT
Sbjct: 306 YAAGD-CT 312
>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 34.5 bits (80), Expect = 0.10
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 254 VKLTNGHT----HACDIVVSAIGVVPN-SNIQVHGTPFELAPDCGIGVNELMQTSISNVY 308
V LT+G T HA + A+G VPN + + + EL P I V+ + +TS+ +Y
Sbjct: 253 VTLTDGRTVEGSHA----LMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIY 308
Query: 309 AAGDVCT 315
AAGD CT
Sbjct: 309 AAGD-CT 314
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 34.2 bits (79), Expect = 0.13
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPD-CG-IGVNELM-QTSISNVYAAGDV 313
T A D V+ AIG ++ + F L D G I V+E + QTSI V+A GD
Sbjct: 370 KTDAADTVILAIGFEGDATDGL-LLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDA 425
>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 34.1 bits (79), Expect = 0.15
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 260 HTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
T D V+ ++G PN+ I + T ++ I +++ QT ++YA GDV
Sbjct: 266 KTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGF-IQIDDFCQTKERHIYAIGDV 319
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 34.0 bits (79), Expect = 0.17
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 271 IGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
IG+VPN+ + GT EL I V+ TS+ V+AAGD T
Sbjct: 445 IGLVPNTEW-LKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTT 487
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 33.8 bits (78), Expect = 0.19
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 28/97 (28%)
Query: 228 DTKITIEYSCEVER---IVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGT 284
+TK+T + E + V E A D V+ A+G VPN +
Sbjct: 234 ETKVT---AVEAKEDGIYVTMEGKKAPA-------EPQRYDAVLVAVGRVPNGKLL---- 279
Query: 285 PFELAPDCG--------IGVNELMQTSISNVYAAGDV 313
A G I V++ +T++ +++A GD+
Sbjct: 280 ---DAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDI 313
>gnl|CDD|135428 PRK05529, PRK05529, cell division protein FtsQ; Provisional.
Length = 255
Score = 33.4 bits (76), Expect = 0.19
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 21 LAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIVDTVAAID 80
LAF+ G+ +V +G+ VT+ P+ L D+ + F V+ A +
Sbjct: 132 LAFIQRGDGFHVVDAAGVSIKVTQARPLGMPLIDVPKDGNQEQLFAAAAWVLAALPADLK 191
Query: 81 PRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKS 134
+V+ + E + + + W S VL+ LK
Sbjct: 192 KQVDLISAETPDDVNLTL----RNSGKTVFWGSFE----NSKLKAKVLEALLKI 237
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 33.8 bits (78), Expect = 0.20
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 107 PRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN---VDIVWVV 163
RK+W+ V + + D L + K KI+VI G EL+N +I+ +
Sbjct: 668 GRKVWFDDDVGRL-NYDERGELLGEFKGDDKILVILQDGDYYTTNFELTNHYEPNIIVLE 726
Query: 164 K---DKHISATFLDPGAAEFF 181
K +K SA + D ++
Sbjct: 727 KFDPEKPWSAIYYDGEKKNYY 747
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 33.3 bits (76), Expect = 0.27
Identities = 13/86 (15%), Positives = 21/86 (24%), Gaps = 12/86 (13%)
Query: 196 IFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDT--------KITIEYSCEVERIVDSED 247
+ E G + P G + + V I S D
Sbjct: 177 LALLSLRLFDLEDGGVVFPGGG-FTLPLGGLPQLIAAALGLLGGRVRLNTRVRSITKSGD 235
Query: 248 DTCNAYVKLTNGHTHACDIVVSAIGV 273
V +G T D V+ + +
Sbjct: 236 G---VTVTTVDGRTIEADAVIVTVPL 258
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 32.9 bits (76), Expect = 0.31
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 26/97 (26%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTH--ACDIVVSAIGVVPNSNIQVHGTPFE 287
I ++ V+ I +D+ ++ +G H D V + G P+ FE
Sbjct: 207 SIKAYFNSRVKEI---TEDS--VTLETPDGEVHTIPNDFVFALTGYRPD---------FE 252
Query: 288 LAPDCGIGVN----------ELMQTSISNVYAAGDVC 314
G+ ++ E M+T++ +Y AG +
Sbjct: 253 FLESLGVELDEDTGIPVYNPETMETNVPGLYLAGVIA 289
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 32.9 bits (76), Expect = 0.37
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVT 34
M+F L+IGGG+AG++ LA G+ + LV
Sbjct: 1 MKFDVLVIGGGLAGLTA--ALAAAEAGKRVALVA 32
>gnl|CDD|151572 pfam11128, Nucleocap_ssRNA, Plant viral coat protein nucleocapsid.
This family of nucleocapsid proteins is from ssRNA
negative-strand viruses of plant origin.
Length = 180
Score = 31.7 bits (72), Expect = 0.43
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 177 AAEFFQDSINKTNTAKPETIFKRMRYNTGGEKG-------PSLGPDWHTQVNLHGSSRDT 229
A +F +D +++ A PE+I + M N EK SLG ++ Q +H S
Sbjct: 71 AQKFEKDKLSEPTGATPESIKEYMEKNEKLEKAKAIVDFLCSLGSNFEAQKKMHPLS-PE 129
Query: 230 KITIE 234
+ + +
Sbjct: 130 RPSRK 134
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 32.8 bits (75), Expect = 0.46
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 18 VEGLAF-LHPGESIGLVTPSGIVKAVT 43
V+ ++F L PGE++GLV SG K+ T
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTT 328
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 32.2 bits (73), Expect = 0.57
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 251 NAYVKLTNGHTHACDIVVSAIGVVPNS---NIQVHGTPFELAPDCGIGVNELMQTSISNV 307
N +V T + ++ + G N+ N++ G I VN M+TS ++
Sbjct: 259 NGFVLTTGHGELRAEKLLISTGRHANTHDLNLEAVGV--TTDTSGAIVVNPAMETSAPDI 316
Query: 308 YAAGDVCT 315
YAAGD C+
Sbjct: 317 YAAGD-CS 323
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 32.0 bits (73), Expect = 0.65
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 253 YVKLTNGHTHACDI--VVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAA 310
Y +G H ++ V IG++PN+ + G EL I V+ +T++ V+AA
Sbjct: 428 YRDRVSGEEHHLELEGVFVQIGLLPNTE-WLKGA-VELNRRGEIIVDARGETNVPGVFAA 485
Query: 311 GDVCT 315
GD T
Sbjct: 486 GDCTT 490
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 31.1 bits (71), Expect = 1.1
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 264 CDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNE-LMQTSISNVYAAGDVCT 315
D V+ ++G PN I ++ I +E TS V+A GD T
Sbjct: 385 VDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVT 437
>gnl|CDD|219756 pfam08237, PE-PPE, PE-PPE domain. This domain is found C terminal
to the PE (pfam00934) and PPE (pfam00823) domains. The
secondary structure of this domain is predicted to be a
mixture of alpha helices and beta strands.
Length = 227
Score = 30.8 bits (70), Expect = 1.1
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 14/78 (17%)
Query: 12 IAGVSCVEGLAFLHPG-ESIGLVTPSGIVKAV-------------TKTVPVTKLLSDITV 57
+A + + G+A++H G LV P+ IV T+ +P+ L D+ V
Sbjct: 147 LADANAIAGIAYVHTGYTDPDLVDPANIVTTTNSRGGNTTYYLIPTEHLPLLMPLRDLGV 206
Query: 58 EETDANKFEGLCTVIVDT 75
A+ + V+V+
Sbjct: 207 GNPLADLLDPPLRVLVEA 224
>gnl|CDD|237494 PRK13763, PRK13763, putative RNA-processing protein; Provisional.
Length = 180
Score = 30.6 bits (70), Expect = 1.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 140 VIGNGGIATELVHELSNVDIVWVVKDKHIS 169
+IG GG ++ EL+ VDI V K ++
Sbjct: 109 IIGEGGKTRRIIEELTGVDI--SVYGKTVA 136
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 31.2 bits (71), Expect = 1.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 293 GIGVNELMQTSISNVYAAGDVC 314
G+ VNE +T++ +YAAGD+
Sbjct: 358 GVWVNEKAETTVPGLYAAGDMA 379
>gnl|CDD|235758 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 30.7 bits (70), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 285 PFELAPDC-----GIGVNELMQTSISNVYAAGDVC 314
P E+AP GI +NE +T+I ++A G+V
Sbjct: 337 PMEVAPTAHHFMGGIRINEDCETNIPGLFACGEVA 371
>gnl|CDD|211858 TIGR03665, arCOG04150, arCOG04150 universal archaeal KH domain
protein. This family of proteins is universal among the
41 archaeal genomes analyzed in and is not observed
outside of the archaea. The proteins contain a single KH
domain (pfam00013) which is likely to confer the ability
to bind RNA.
Length = 172
Score = 29.8 bits (68), Expect = 1.6
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 140 VIGNGGIATELVHELSNVDIVWVVKDKHIS 169
+IG GG ++ EL+ V I V K +
Sbjct: 103 IIGEGGKTRRIIEELTGVSI--SVYGKTVG 130
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 31.1 bits (71), Expect = 1.7
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 265 DIVVSAIGVVPNSNI-QVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
D V++AIG ++ + + +G P L V+ +TS++NVY GDV
Sbjct: 769 DTVITAIGEQVDTELLKANGIP--LDKKGWPVVDANGETSLTNVYMIGDV 816
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 30.7 bits (69), Expect = 1.7
Identities = 41/185 (22%), Positives = 66/185 (35%), Gaps = 43/185 (23%)
Query: 131 KLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190
K+K AK+I + G+G IA EL++ VV + G N+
Sbjct: 233 KIKEAKRIGIAGSGYIAVELIN---------VVNRLGAESYIFARG---------NRLLR 274
Query: 191 AKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTC 250
ETI L + I I VE I ++
Sbjct: 275 KFDETIINE----------------------LENDMKKNNINIITHANVEEIEKVKEKNL 312
Query: 251 NAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYA 309
Y+ + H D V+ +G PN+ ++ + P I V++ +TS+ ++YA
Sbjct: 313 TIYLSDGRKYEHF-DYVIYCVGRSPNTEDLNLKAL-NIKTPKGYIKVDDNQRTSVKHIYA 370
Query: 310 AGDVC 314
GD C
Sbjct: 371 VGDCC 375
>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring).
This is family of Rossmann fold oxidoreductases that
catalyzes the NADPH-dependent hydroxylation of lysine at
the N6 position, EC:1.14.13.59.
Length = 335
Score = 30.6 bits (70), Expect = 1.9
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 75 TVAAIDP-------RVNCVITEKQNRIKYKTLCICTGASPR-----KIWYSPHVITIRDT 122
V ++P RV+ T + + L + TG +P K V +
Sbjct: 116 EVEEVEPDDSGFLLRVHTRDTGTEQTYLARNLVLGTGTTPYIPECAKPLPGERVFH---S 172
Query: 123 DSVAVLQEKLKSAKKIVVIGNGGIATELVHEL----SNVDIVWV 162
+ + +L + K+I V+G G A E+ +L + WV
Sbjct: 173 SEYLLRKPRLLAGKRITVVGGGQSAAEIFLDLLRRQPGYQLTWV 216
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 30.3 bits (69), Expect = 2.0
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSA 270
D + + EV RI ++E A V L +G D VVS
Sbjct: 230 EDLGGELRLNAEVIRI-ETEGGRATA-VHLADGERLDADAVVSN 271
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 30.3 bits (69), Expect = 2.1
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 261 THACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV-CT 315
+ DI I VVP G F + G+ N +TSI +YA G+V CT
Sbjct: 312 KNGVDIETKRIPVVP-------GAHFLMG---GVKTNLDGETSIPGLYAIGEVACT 357
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 30.0 bits (68), Expect = 2.2
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPF 286
R + I S V + V+LT+G T D VV A G F
Sbjct: 93 RRYGLPIRLSTRVTAVERDGGRFV---VRLTDGETVRADYVVDATGAFSVPKP----PGF 145
Query: 287 ELAPDCGIGVNELM 300
A G+ + +++
Sbjct: 146 PGADAEGVHLVDVL 159
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 30.4 bits (69), Expect = 2.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVT 34
F +IIGGG+AG+SC L G+ ++
Sbjct: 1 FDVIIIGGGLAGLSC--ALRLAEAGKKCAIIA 30
>gnl|CDD|99979 cd03807, GT1_WbnK_like, This family is most closely related to the
GT1 family of glycosyltransferases. WbnK in Shigella
dysenteriae has been shown to be involved in the type 7
O-antigen biosynthesis.
Length = 365
Score = 29.9 bits (68), Expect = 2.5
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 111 WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNG 144
+ P ++ + Q KKIVVI NG
Sbjct: 135 SFIPLIVANSA-AAAEYHQAIGYPPKKIVVIPNG 167
>gnl|CDD|224019 COG1094, COG1094, Predicted RNA-binding protein (contains KH
domains) [General function prediction only].
Length = 194
Score = 29.6 bits (67), Expect = 2.5
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 116 VITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISA--TFL 173
VI ++D V L K +IG G + EL+ V I V K ++ F
Sbjct: 95 VIDLKD---VVTLSGDHLRRIKGRIIGREGKTRRAIEELTGVYI--SVYGKTVAIIGGFE 149
Query: 174 DPGAAEFFQDSINK-TNTAKPETIFKRMR 201
A +++ N A ++K +
Sbjct: 150 QVEIAR---EAVEMLINGAPHGKVYKFLE 175
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 29.9 bits (68), Expect = 2.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLV 33
M++ +IIGGGI G + L+ P S+ L+
Sbjct: 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALL 34
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 30.3 bits (69), Expect = 2.6
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 13/58 (22%)
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG-IGVNELMQTSISNVYAAGDV-CT 315
D I VVP H T G I V+ +TSI +YA G+V CT
Sbjct: 320 LKAGIDPTREPIPVVP----AAHYT-------MGGIAVDANGRTSIPGLYAIGEVACT 366
Score = 29.5 bits (67), Expect = 4.4
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36
LIIG G+AG++ L+ L P + ++T
Sbjct: 11 LIIGSGLAGLTA--ALS-LAPSFRVTVLTKG 38
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 30.2 bits (69), Expect = 2.9
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 6 LIIGGGIAGVSCVEGLA 22
IIGGGIAG + LA
Sbjct: 264 AIIGGGIAGAALALALA 280
>gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional.
Length = 424
Score = 29.7 bits (67), Expect = 3.1
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 16/115 (13%)
Query: 251 NAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTS-ISNVYA 309
+ V L +G +VV + GV P + + I V++ ++ I NV+A
Sbjct: 256 DKEVVLKDGEVIPTGLVVWSTGVGPGPLTK--QLKVDKTSRGRISVDDHLRVKPIPNVFA 313
Query: 310 AGDVCT----PSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEPVIQDFSFE 360
GD P LA+ A G Y AK +K +P+ + F +
Sbjct: 314 LGDCAANEERPLPTLAQ---------VASQQGVYLAKEFNNELKGKPMSKPFVYR 359
>gnl|CDD|112929 pfam04136, Sec34, Sec34-like family. Sec34 and Sec35 form a
sub-complex, in a seven protein complex that includes
Dor1 (pfam04124). This complex is thought to be
important for tether vesicles to the Golgi.
Length = 157
Score = 29.1 bits (65), Expect = 3.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 419 TEIEEMCENLILNQLDLTDIADDL 442
+E+ E CE L Q+ L+++AD +
Sbjct: 45 SELSEACEQLSTEQMRLSELADGI 68
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 29.9 bits (67), Expect = 3.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 1 MEFTYLIIGGGIAGVSC 17
M+ +IIGGGI G+S
Sbjct: 3 MKMDVVIIGGGIVGLSA 19
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 30.1 bits (68), Expect = 3.3
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 261 THACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVN-ELMQTSISNVYAAGDVCTPSWD 319
T D V+SAIG + I + + + V+ E +QTS++ V+A GD C D
Sbjct: 423 TLQADTVISAIGQQVDPPIAEA-AGIGTSRNGTVKVDPETLQTSVAGVFAGGD-CVTGAD 480
Query: 320 LA 321
+A
Sbjct: 481 IA 482
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 29.8 bits (68), Expect = 3.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLV 33
+ ++IIGGGI G+S L +PG I ++
Sbjct: 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVL 33
>gnl|CDD|235472 PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate
reductoisomerase; Provisional.
Length = 385
Score = 29.7 bits (68), Expect = 3.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIV 160
+ P + + D ++ L+E L +A V+ G G+ EL L D+V
Sbjct: 49 FRPKYVVVADEEAAKELKEALAAAGIEVLAGEEGL-CELA-ALPEADVV 95
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 29.6 bits (67), Expect = 3.5
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPS 36
+I+G G+AG+ L PG + L+
Sbjct: 3 VIVGAGLAGLLLALRLRQARPGLRVLLIDAG 33
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 28.7 bits (65), Expect = 3.7
Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 238 EVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
EV + V L +G T D VV A G
Sbjct: 120 EVVDLRPRGG---GYTVTLADGATLRADAVVLATG 151
Score = 27.9 bits (63), Expect = 6.4
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 7 IIGGGIAGVSCVEGLAFLHPGESI 30
IIG G G+S +E L P +
Sbjct: 2 IIGAGPRGLSVLERLLRRAPDRPL 25
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 29.5 bits (67), Expect = 3.7
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273
R + V I +D V ++G T D+VV A G+
Sbjct: 118 RAAGADVRLGTTVTAIEQDDDG---VTVTFSDGTTGRYDLVVGADGL 161
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 29.7 bits (67), Expect = 3.7
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 19 EGLAF-LHPGESIGLVTPSG 37
+GL F LHPGE + LV PSG
Sbjct: 498 KGLTFTLHPGEVVALVGPSG 517
>gnl|CDD|217176 pfam02670, DXP_reductoisom, 1-deoxy-D-xylulose 5-phosphate
reductoisomerase. This is a family of
1-deoxy-D-xylulose 5-phosphate reductoisomerases. This
enzyme catalyzes the formation of
2-C-methyl-D-erythritol 4-phosphate from
1-deoxy-D-xylulose-5-phosphate in the presence of NADPH.
This reaction is part of the terpenoid biosynthesis
pathway.
Length = 129
Score = 28.2 bits (64), Expect = 3.9
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 112 YSPHVITIRDTDSVAVLQEKLKSA--KKIVVIGNGGIATELVHELSNVDIV 160
+ P + + D ++ L+E L A K V+ G G+ EL L DIV
Sbjct: 46 FKPKYVAVADEEAAEELKEALAGAGLKTEVLAGEEGL-CELA-ALPEADIV 94
>gnl|CDD|184408 PRK13937, PRK13937, phosphoheptose isomerase; Provisional.
Length = 188
Score = 28.7 bits (65), Expect = 4.7
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 123 DSVAVLQEKLKSAKKIVVIGNGG-------IATELV 151
L E L + KI++ GNGG IA ELV
Sbjct: 26 KVAEALIEALANGGKILLCGNGGSAADAQHIAAELV 61
>gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like)
FMN-binding domain. Members of this family catalyze the
reduction of the 5,6-double bond of a uridine residue on
tRNA. Dihydrouridine modification of tRNA is widely
observed in prokaryotes and eukaryotes, and also in some
archaea. Most dihydrouridines are found in the D loop of
t-RNAs. The role of dihydrouridine in tRNA is currently
unknown, but may increase conformational flexibility of
the tRNA. It is likely that different family members
have different substrate specificities, which may
overlap. 1VHN, a putative flavin oxidoreductase, has
high sequence similarity to DUS. The enzymatic
mechanism of 1VHN is not known at the present.
Length = 231
Score = 29.0 bits (66), Expect = 4.9
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 107 PRKIW--YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIAT----ELVHELSNVD 158
R YS D D +A ++K A I VI NG I + E + VD
Sbjct: 159 GRTREQRYSGPA----DWDYIA----EIKEAVSIPVIANGDIFSLEDALRCLEQTGVD 208
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 29.2 bits (66), Expect = 5.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP 35
M+F +++GGG+ G S LA G + L+ P
Sbjct: 4 MKFDVVVVGGGLVGASL--ALALAQSGLRVALLAP 36
>gnl|CDD|222178 pfam13500, AAA_26, AAA domain. This domain is found in a number of
proteins involved in cofactor biosynthesis such as
dethiobiotin synthase and cobyric acid synthase. This
domain contains a P-loop motif.
Length = 197
Score = 28.7 bits (65), Expect = 5.0
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 111 WYSPHVITIRD--TDSVAVLQEKLKSAKKIVVI-GNGGIATELVHELSNVDIV 160
SPH+ + T + + +KL +V+ G GG+ L L N+DI
Sbjct: 71 PLSPHLAARLEGVTIDLEKIVKKLPKDADPLVVEGAGGLMVPLNENLLNIDIA 123
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 29.0 bits (65), Expect = 5.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 7 IIGGGIAGVSCVEGLA 22
I+G GIAG++ L
Sbjct: 6 IVGAGIAGLAAAYALR 21
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 29.1 bits (66), Expect = 5.5
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 3 FTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTP 35
+IGGG AG+ +A G S+ LV P
Sbjct: 8 TDIAVIGGGPAGL--AAAIALARAGASVALVAP 38
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 28.9 bits (65), Expect = 6.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
D V IG+VPN+ + EL I ++E +TS+ ++AAGDV T
Sbjct: 435 KQLDLDGVFVQIGLVPNTEW-LKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTT 488
>gnl|CDD|139164 PRK12700, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 230
Score = 28.5 bits (63), Expect = 7.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 245 SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHG 283
S +T N K + +T I + IGV+PN N+Q+ G
Sbjct: 125 SGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAG 163
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 28.4 bits (64), Expect = 7.1
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 6 LIIGGGIAGVSC 17
++IGGGI G+S
Sbjct: 3 VVIGGGIVGLST 14
>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional.
Length = 326
Score = 28.5 bits (64), Expect = 8.0
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 23 FLHPGES----IGLVTPSGIVKAVTKTVPVTKLLSDITV 57
F+HPGE+ +G+VTP +V A++ + +++L+ I V
Sbjct: 78 FVHPGEAAHGDLGMVTPQDVVIAISNSGESSEILALIPV 116
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function
prediction only].
Length = 534
Score = 28.4 bits (64), Expect = 8.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 18 VEGLAF-LHPGESIGLVTPSGIVKAVTKTVPVTKLL-SDITVEETDANKFEG 67
V+G++F + GE++ LV SG K+VT + + LL S + + F+G
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVT-ALSILGLLPSPAAAHPSGSILFDG 76
>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase. This model finds
proteins from prokaryotes and functionally equivalent
domains from larger, multifunctional proteins of fungi
and plants. Below the trusted cutoff of 180, but above
the noise cutoff of 20, are the putative shikimate
dehydrogenases of Thermotoga maritima and Mycobacterium
tuberculosis, and uncharacterized paralogs of shikimate
dehydrogenase from E. coli and H. influenzae. The
related enzyme quinate 5-dehydrogenase scores below the
noise cutoff. A neighbor-joining tree, constructed with
quinate 5-dehydrogenases as the outgroup, shows the
Clamydial homolog as clustering among the shikimate
dehydrogenases, although the sequence is unusual in the
degree of sequence divergence and the presence of an
additional N-terminal domain [Amino acid biosynthesis,
Aromatic amino acid family].
Length = 270
Score = 28.2 bits (63), Expect = 8.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 121 DTDS---VAVLQE--KLKSAKKIVVIGNGG----IATELVHELSNVDI 159
+TD V+ L++ L+ + +++IG GG +A EL+ NV I
Sbjct: 98 NTDGIGLVSDLEQLIPLRPNQNVLIIGAGGAAKAVALELLKADCNVII 145
>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 28.3 bits (63), Expect = 9.4
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 267 VVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
V+ A G PN+ N+ + ++ + I V+E +TS+ +++A GDV
Sbjct: 342 VMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDV 389
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.409
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,085,370
Number of extensions: 2232328
Number of successful extensions: 2450
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2404
Number of HSP's successfully gapped: 136
Length of query: 454
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 354
Effective length of database: 6,502,202
Effective search space: 2301779508
Effective search space used: 2301779508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)