RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1545
(454 letters)
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 157 bits (399), Expect = 5e-44
Identities = 76/459 (16%), Positives = 155/459 (33%), Gaps = 114/459 (24%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVT--PSGIVKAVTKTVPVTKLLS-DITVEET 60
LI+G G AG S + L + I ++ + + ++++ + ++++
Sbjct: 11 KILILGAGPAGFSAAKAA--LGKCDDITMINSEKYL---PYYR-PRLNEIIAKNKSIDDI 64
Query: 61 DANKFE-----GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRK--IWYS 113
K + + + + +IDP V + +IKY+ L I +G+ K + ++
Sbjct: 65 LIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHA 124
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISAT 171
+ ++ D ++++ K+ K +IG G + EL + + + ++
Sbjct: 125 DEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER 184
Query: 172 FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231
LD F +D +++ G I
Sbjct: 185 QLDRDGGLFLKDKLDR-----------------------------------LG------I 203
Query: 232 TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPD 291
I + E + G V++A+GV PN + D
Sbjct: 204 KIYTNSNFEEM----------------GDLIRSSCVITAVGVKPNL---------DFIKD 238
Query: 292 CGIG------VNELMQTSISNVYAAGDVCTPSWDLAKQWFQMR--LWTQAKHMGTYAAKC 343
I VN+ M+TSI ++YA GDV +++ L A G A
Sbjct: 239 TEIASKRGILVNDHMETSIKDIYACGDVA--------EFYGKNPGLINIANKQGEVAGLN 290
Query: 344 MVGAVKNEPVIQDFSFEMFTHMT--KFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYI 401
G +D S+ K G +I G ++ + YI
Sbjct: 291 ACG--------EDASYSEIIPSPILKVSGISIISCGDIENNK---PSKVFRSTQEDK-YI 338
Query: 402 KLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLTDIAD 440
++K+ ++ A +IG+ + + I + +I+
Sbjct: 339 VCMLKENKIDAAAVIGDVSLGTKLKKAIDSSKSFDNISS 377
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 140 bits (356), Expect = 8e-38
Identities = 74/439 (16%), Positives = 145/439 (33%), Gaps = 105/439 (23%)
Query: 7 IIGGGIAGVSCVEGLAFLHPGESIGLVT--PSGIVKAVTKTVPVTKLLS-DITVEE---T 60
IIG G+AG + L + ++T + +K ++ S + +
Sbjct: 9 IIGTGLAGYNLAREWRKLDGETPLLMITADDGR---SYSK-PMLSTGFSKNKDADGLAMA 64
Query: 61 DANKFEGLCTVIV---DTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI----WYS 113
+ + V IDP + ++ ++Y+ L + GA P ++
Sbjct: 65 EPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEE-EVRYRDLVLAWGAEPIRVPVEGDAQ 123
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISAT 171
+ I D + A ++ ++++++G G I E ++LS+ + VV + +
Sbjct: 124 DALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG 183
Query: 172 FLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKI 231
L P AA+ Q + LG +H
Sbjct: 184 LLHPAAAKAVQAGLE------------------------GLGVRFHLGPV---------- 209
Query: 232 TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPD 291
+ + + + L++G CD+VVSA+G+ P + ELA
Sbjct: 210 -------LASLKKAGEGLE---AHLSDGEVIPCDLVVSAVGLRPRT---------ELAFA 250
Query: 292 C------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMR--LWTQAKHMGTYAAKC 343
GI V+ ++TS +N+YA GD + + A+
Sbjct: 251 AGLAVNRGIVVDRSLRTSHANIYALGDCA--------EVDGLNLLYVMPLMACARALAQT 302
Query: 344 MVGAVKNEPVIQDFSF-EMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIK 402
+ G ++ M K +++ G + V +K
Sbjct: 303 LAGNPS------QVAYGPMPV-TVKTPACPLVVSPPPRGMDGQ------WLVEGSGTDLK 349
Query: 403 LVMKD--GRMQGAVLIGET 419
++ +D GR+ G L G
Sbjct: 350 VLCRDTAGRVIGYALTGAA 368
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 133 bits (336), Expect = 4e-35
Identities = 81/451 (17%), Positives = 153/451 (33%), Gaps = 121/451 (26%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHP----GES-------IGLVTPSGIVKAVTKTVPVTKLLS 53
+I+G G G + L+ + + L I + +
Sbjct: 11 VVIVGNGPGGFELAKQLSQTYEVTVIDKEPVPYYSKPML--SHYIAGFIP--------RN 60
Query: 54 DITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRK--IW 111
+ D + G+ + + ID VITEK + Y TL + TGA R+ I
Sbjct: 61 RLFPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEK-GEVPYDTLVLATGARAREPQIK 119
Query: 112 YSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVVKDKHISA 170
+++T+R ++E ++++ + ++IG G I EL L+ V ++ H A
Sbjct: 120 GKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLI---HRGA 176
Query: 171 TF--LDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRD 228
F LD + +D + E G
Sbjct: 177 MFLGLDEELSNMIKDMLE--------------------ETG------------------- 197
Query: 229 TKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFEL 288
+ + E+ + LTN + + AIG+VPN +L
Sbjct: 198 --VKFFLNSELLEANEE--------GVLTNSGFIEGKVKICAIGIVPNV---------DL 238
Query: 289 APDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMR--LWTQAKHMGTYA 340
A GI +++ +TS +VYA GD ++ + A
Sbjct: 239 ARRSGIHTGRGILIDDNFRTSAKDVYAIGDCA--------EYSGIIAGTAKAAMEQARVL 290
Query: 341 AKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEY 400
A + G + ++F+ + + KF ++ ++G G+ E+
Sbjct: 291 ADILKGEPR------RYNFKFRSTVFKFGKLQIAIIGNTKGEGKWI-----------EDN 333
Query: 401 IKLVMKDGRMQGAVLIGETEIEEMCENLILN 431
K+ ++G++ GAV+ + E IL+
Sbjct: 334 TKVFYENGKIIGAVVFNDIRKATKLEKEILD 364
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 124 bits (313), Expect = 3e-31
Identities = 65/400 (16%), Positives = 114/400 (28%), Gaps = 112/400 (28%)
Query: 2 EFTYLIIGGGIAGVSCVEGL---------------------------AFLHPGESIGLVT 34
+L+IGGG A + + + T
Sbjct: 11 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKT 70
Query: 35 PSGIVKAVTKTVPVTKLLSDITVEETDANKFEGLCTVIVDT-VAAIDPRVNCVITEKQNR 93
+ + S + + G V+ V +D R N V ++
Sbjct: 71 LRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQ 130
Query: 94 IKYKTLCICTGASPRKIWYSP--------HVITIRDTDSVAVLQEKLKSAKKIVVIGNGG 145
I Y+ I TG +PR + R L++ + K I +IG G
Sbjct: 131 ITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGF 190
Query: 146 IATELVHELS------NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKR 199
+ +EL L +++ + +K L + + +
Sbjct: 191 LGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTME---------------- 234
Query: 200 MRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG 259
+ G + + + V+ + + +KL +G
Sbjct: 235 ----------------KVRR---EG------VKVMPNAIVQSV---GVSSGKLLIKLKDG 266
Query: 260 HTHACDIVVSAIGVVPNSNIQVHGTPFELAPDC---------GIGVNELMQTSISNVYAA 310
D +V+A+G+ PN ELA G VN +Q SN++ A
Sbjct: 267 RKVETDHIVAAVGLEPNV---------ELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVA 316
Query: 311 GDVCT-PSWDLAKQWFQMRL--WTQAKHMGTYAAKCMVGA 347
GD L + R+ A G A + M GA
Sbjct: 317 GDAACFYDIKLG----RRRVEHHDHAVVSGRLAGENMTGA 352
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 123 bits (310), Expect = 5e-31
Identities = 74/377 (19%), Positives = 119/377 (31%), Gaps = 96/377 (25%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLVT-----P------SGIVKAVTKTVPVTKLL 52
+I+G G+AGV GL +I LV P S KA L
Sbjct: 6 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLS---KAY--------LA 54
Query: 53 SDITVEET---DANKFEGL-CTVIVDT-VAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107
T E + + ++ T V AI+ VI + Y L + TG P
Sbjct: 55 GKATAESLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRP 114
Query: 108 RKI-------WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVD 158
R + + + +R + ++ +L + ++VVIG G I E+ N+
Sbjct: 115 RPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMH 174
Query: 159 IVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHT 218
+ + + P + F++ H
Sbjct: 175 VTLLDTAARVLERVTAPPVSAFYEH--------------------------------LHR 202
Query: 219 QVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSN 278
+ G + I +V S D V +G D+V++ IG++PN
Sbjct: 203 E---AG------VDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNC- 252
Query: 279 IQVHGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL--W 330
ELA GI +NE MQTS + A GD + +R+
Sbjct: 253 --------ELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCA--RFHSQLYDRWVRIESV 302
Query: 331 TQAKHMGTYAAKCMVGA 347
A A + G
Sbjct: 303 PNALEQARKIAAILCGK 319
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 119 bits (302), Expect = 4e-30
Identities = 81/374 (21%), Positives = 126/374 (33%), Gaps = 96/374 (25%)
Query: 4 TYLIIGGGIAGVSCVEGL-AFLHPGESIGLVT-----P------SGIVKAVTKTVPVTKL 51
T LI G G AG L +PG I L+ P S KA L
Sbjct: 3 TVLIAGAGHAGFQVAVSLRQAKYPGR-IALINDEKHLPYQRPPLS---KAY--------L 50
Query: 52 LSDITVEET---DANKFEGLC-TVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107
S F+ +I D + +ID ++ I+Y L + TGA
Sbjct: 51 KSGGDPNSLMFRPEKFFQDQAIELISDRMVSIDREGRKLLLASGTAIEYGHLVLATGARN 110
Query: 108 RKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVW 161
R + P V+ +R D VL++++ K +VVIG G I E +++
Sbjct: 111 RMLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDV 170
Query: 162 VVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221
V + A + P + +F D H+
Sbjct: 171 VELAPRVMARVVTPEISSYFHD--------------------------------RHSG-- 196
Query: 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV 281
G I + Y I + V L++G+T CD+VV +GV+PN
Sbjct: 197 -AG------IRMHYGVRATEIA--AEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV---- 243
Query: 282 HGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL--WTQA 333
E+A GI V++ + TS ++ A GD ++ + MR+ A
Sbjct: 244 -----EIAAAAGLPTAAGIIVDQQLLTSDPHISAIGDCA--LFESVRFGETMRVESVQNA 296
Query: 334 KHMGTYAAKCMVGA 347
A + G
Sbjct: 297 TDQARCVAARLTGD 310
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 118 bits (298), Expect = 1e-29
Identities = 88/485 (18%), Positives = 159/485 (32%), Gaps = 123/485 (25%)
Query: 1 MEFTYLIIGGGIAGVSCVEGL-AFLHPGESIGLVT---------PSGIVKAVTKTVPVTK 50
++ +++G G+A VS V L + G I +V P P++K
Sbjct: 6 LKAPVVVLGAGLASVSFVAELRQAGYQGL-ITVVGDEAERPYDRP-----------PLSK 53
Query: 51 -LLSDITVEETDANKFEGL-CTVIVDT-VAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107
++ E+ + ++ + DP+ + V + Y TL + TGA+P
Sbjct: 54 DFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 113
Query: 108 RKI----WYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN--VDIVW 161
R + + V T+R + +Q L+ +++++G G I EL V +
Sbjct: 114 RALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSL 173
Query: 162 VVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221
V + + A+F +H
Sbjct: 174 VETQPRLMSRAAPATLADFVAR--------------------------------YHAA-- 199
Query: 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV 281
G + + + V VD V L +G A D+VV IGV+ N
Sbjct: 200 -QG------VDLRFERSVTGSVDGV-------VLLDDGTRIAADMVVVGIGVLAND---- 241
Query: 282 HGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL--WTQA 333
LA GI V+ +T+ +VYA GDV R+ W+ A
Sbjct: 242 -----ALARAAGLACDDGIFVDAYGRTTCPDVYALGDVT--RQRNPLSGRFERIETWSNA 294
Query: 334 KHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKF----FGYKVILLGLFNGQTLENDYE 389
++ G A+ +V P + + + ++ + GL +G E
Sbjct: 295 QNQGIAVARHLVD--PTAPGYAELPW--------YWSDQGALRIQVAGLASG------DE 338
Query: 390 ILLRVTRGEEYIKLVM---KDGRMQGAVLIGETEIEEMCENLILNQLDLTDIADDLLNPN 446
++R + K + + GR+ GA + L+ L +P
Sbjct: 339 EIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPD--RAALADPA 396
Query: 447 IDIDD 451
D+
Sbjct: 397 TDLRK 401
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic hydrocar
catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida}
Length = 410
Score = 117 bits (295), Expect = 3e-29
Identities = 65/374 (17%), Positives = 119/374 (31%), Gaps = 92/374 (24%)
Query: 1 MEFTYLIIGGGIAGVSCVEGL-AFLHPGESIGLVT-----P------SGIVKAV-TKTVP 47
M IIG G+ G + + L A G I L+ P S KAV ++
Sbjct: 1 MATHVAIIGNGVGGFTTAQALRAEGFEGR-ISLIGDEPHLPYDRPSLS---KAVLDGSLE 56
Query: 48 VTKLLSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASP 107
+L++ + + + L V A+D + + + + + I TG+
Sbjct: 57 RPPILAE--ADWYGEARIDMLTGP---EVTALDVQTRTISLDDGTTLSADAIVIATGSRA 111
Query: 108 RKIWYS----PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVW 161
R + P V+T+R V VL++ SA +++++G G I E+ + +
Sbjct: 112 RTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTI 171
Query: 162 VVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVN 221
+ + L + + T+
Sbjct: 172 LEAGDELLVRVLGRRIGAWLRG--------------------------------LLTE-- 197
Query: 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQV 281
G + +E V + V ++G + D + +G P
Sbjct: 198 -LG------VQVELGTGVVGF---SGEGQLEQVMASDGRSFVADSALICVGAEPAD---- 243
Query: 282 HGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL--WTQA 333
+LA G+ V+ T V+A GDV SW L + L + A
Sbjct: 244 -----QLARQAGLACDRGVIVDHCGATLAKGVFAVGDVA--SWPLR-AGGRRSLETYMNA 295
Query: 334 KHMGTYAAKCMVGA 347
+ A ++G
Sbjct: 296 QRQAAAVAAAILGK 309
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 110 bits (277), Expect = 1e-26
Identities = 79/377 (20%), Positives = 124/377 (32%), Gaps = 99/377 (26%)
Query: 4 TYLIIGGGIAGVSCVEGL-AFLHPGESIGLVT-----P------SGIVKAVTKTVPVTKL 51
+I+G G G L G + ++ P S K L
Sbjct: 11 DVVIVGAGHGGAQAAIALRQNGFEGR-VLVIGREPEIPYERPPLS---KEY--------L 58
Query: 52 LSDITVEET---DANKFE--GLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGAS 106
+ T E A +E + + V ++DP + V + I+Y L TG
Sbjct: 59 AREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGD 118
Query: 107 PRKI----WYSPHVITIRDTDSVAVLQEKLKS-AKKIVVIGNGGIATELVHELS--NVDI 159
PR++ V +R + L +L + AK VVIG G I E L+ V++
Sbjct: 119 PRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNV 178
Query: 160 VWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQ 219
+ + A +EF+Q H
Sbjct: 179 TLLEALPRVLARVAGEALSEFYQA--------------------------------EHRA 206
Query: 220 VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI 279
HG + + ++ I D T V++ +G DIV+ IG+VP
Sbjct: 207 ---HG------VDLRTGAAMDCIE--GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCV-- 253
Query: 280 QVHGTPFELAPDC------GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQ-MRL--W 330
G+ V+E +TS+++VYA GD + +RL
Sbjct: 254 -------GALISAGASGGNGVDVDEFCRTSLTDVYAIGDCA--AHANDFADGAVIRLESV 304
Query: 331 TQAKHMGTYAAKCMVGA 347
A M T AAK + GA
Sbjct: 305 QNANDMATAAAKDICGA 321
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 104 bits (262), Expect = 2e-24
Identities = 64/404 (15%), Positives = 115/404 (28%), Gaps = 95/404 (23%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESI--------------GLVTP---SGIVKAVTKTVP 47
++IG G L P + G+ P SG V
Sbjct: 6 VVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGI--PYYVSGEVS------N 57
Query: 48 VTKLLSDITVEETDANKFEGLCTVIVDT---VAAIDP-----RVNCVITEKQNRIKYKTL 99
+ L + D F V AID + + T ++ +KY L
Sbjct: 58 IESLQATPYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKL 117
Query: 100 CICTGASPRKI----WYSPHVITIRDTDSVAVLQEKLKS--AKKIVVIGNGGIATELV-- 151
+ G+ + V + + D +Q + + K V++G G I E+
Sbjct: 118 VLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVS 177
Query: 152 -HELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210
++ +D V I F ++ + + K
Sbjct: 178 LADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEK----------------------- 214
Query: 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSA 270
+ + + +V R+ +T+ T D+V+ A
Sbjct: 215 ------------ND------VVVHTGEKVVRLEGENGKVA---RVITDKRTLDADLVILA 253
Query: 271 IGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLW 330
GV PN+ + EL P I V+ M+TS +++A GD T + + L
Sbjct: 254 AGVSPNTQL-ARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLG 312
Query: 331 TQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFTHMTKFFGYKV 373
+ A G + + + K F
Sbjct: 313 SMANRQGRVIGTNLADGDATFPGAVG-------SWAVKLFEGSA 349
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 102 bits (256), Expect = 9e-24
Identities = 56/310 (18%), Positives = 100/310 (32%), Gaps = 65/310 (20%)
Query: 76 VAAIDP-----RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVA 126
V +DP +V +IT ++ Y L + TG+ P S V ++ +
Sbjct: 81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAK 140
Query: 127 VLQEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISATFLDPGAAEFFQDS 184
L E+ AK I +IG+G I EL SN + V ++ + + + D +
Sbjct: 141 KLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKD 200
Query: 185 INKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVD 244
HG + + +V +
Sbjct: 201 YEA-----------------------------------HG------VNLVLGSKVAAFEE 219
Query: 245 SEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSI 304
+D+ K +G DI + IG PN+ + + + I +E M +S
Sbjct: 220 VDDEII---TKTLDGKEIKSDIAILCIGFRPNTELLKGK--VAMLDNGAIITDEYMHSSN 274
Query: 305 SNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFT 363
+++AAGD ++ + L T A G + VK+ +
Sbjct: 275 RDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQS-------S 327
Query: 364 HMTKFFGYKV 373
K +G
Sbjct: 328 SGLKLYGRTY 337
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 103 bits (258), Expect = 9e-24
Identities = 75/403 (18%), Positives = 129/403 (32%), Gaps = 101/403 (25%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESI--------------GLVTP---SGIVKAVTKTVP 47
+++GG G S L L + I GL P G++ K +
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGL--PYYIGGVITERQKLLV 96
Query: 48 VTKLLSDITVEETDANKFEGLCTVIVDT-VAAIDP-----RVNCVITEKQNRIKYKTLCI 101
T E + +F L + V + V I+ + V T + Y L +
Sbjct: 97 QTV--------ERMSKRF-NL-DIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLIL 146
Query: 102 CTGASPRK-----IWYSPHVITIRDTDSVAVLQEKL--KSAKKIVVIGNGGIATELVHEL 154
GA P I + + T+R+ ++ + K + VIG G I E+V L
Sbjct: 147 SPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENL 206
Query: 155 SN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212
+++ V + D A + + +
Sbjct: 207 RERGIEVTLVEMANQVMPPI-DYEMAAYVHEHMKN------------------------- 240
Query: 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
H + + + V+ + ++ V+L +G D+++ AIG
Sbjct: 241 ----------HD------VELVFEDGVDALEENGA-----VVRLKSGSVIQTDMLILAIG 279
Query: 273 VVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQ 332
V P S++ G L I VNE QTS ++YA GD + + + L
Sbjct: 280 VQPESSL-AKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWP 338
Query: 333 AKHMGTYAAKCMVG--AVKNEPVIQDFSFEMFTHMTKFFGYKV 373
A G A + G + + T + K F V
Sbjct: 339 ANRQGRMLADIIHGHTDSLYKGTLG-------TSVAKVFDLTV 374
Score = 28.0 bits (63), Expect = 8.7
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 129 QEKLKSAKKIVVIGN--GGI--ATELVHELSNVDIVWVVKDKHIS 169
+ ++KIVV+G GG A L +I+ V + ++IS
Sbjct: 30 DKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS 74
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 101 bits (253), Expect = 2e-23
Identities = 53/308 (17%), Positives = 96/308 (31%), Gaps = 64/308 (20%)
Query: 76 VAAIDP---RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVL 128
V A+D + E+Q Y L + TGAS + ++ +
Sbjct: 81 VVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAA 140
Query: 129 QEKLKSAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISATFLDPGAAEFFQDSIN 186
L++++ + VIG G I E + L + V V +++ + D Q S+
Sbjct: 141 VPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLE 200
Query: 187 KTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSE 246
K + + V I ++
Sbjct: 201 K-----------------------------------QA------VIFHFEETVLGIEETA 219
Query: 247 DDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306
+ V T+ +CD + A+ + P + D I V+ +QTS+ N
Sbjct: 220 NGI----VLETSEQEISCDSGIFALNLHPQLAYLDKK--IQRNLDQTIAVDAYLQTSVPN 273
Query: 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFTHM 365
V+A GD + + + F L A G A + + ++ T
Sbjct: 274 VFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLR-------TMG 326
Query: 366 TKFFGYKV 373
TK Y +
Sbjct: 327 TKVGDYYL 334
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 100 bits (251), Expect = 4e-23
Identities = 59/369 (15%), Positives = 129/369 (34%), Gaps = 80/369 (21%)
Query: 76 VAAIDP-----RVNCVITEKQNRIKYKTLCICTGASPRKI-WYSPHVITIRDTDSVAVLQ 129
V AI+ V T +Q Y L + GAS + + S T+R+ + +
Sbjct: 81 VIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAID 140
Query: 130 EKLK--SAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSI 185
+ +K K++V+G G ++ E++ L + + + I+ D + D +
Sbjct: 141 QFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLM-DADMNQPILDEL 199
Query: 186 NKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDS 245
+K I + E+ I +
Sbjct: 200 DK-----------------------------------RE------IPYRLNEEINAINGN 218
Query: 246 EDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSIS 305
E + +G D+++ +G PNS + + +L I VN+ +T++
Sbjct: 219 E-------ITFKSGKVEHYDMIIEGVGTHPNSKF-IESSNIKLDRKGFIPVNDKFETNVP 270
Query: 306 NVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG--AVKNEPVIQDFSFEMFT 363
N+YA GD+ T + + L A + A+ + G ++ + +
Sbjct: 271 NIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLG-------N 323
Query: 364 HMTKFFGYKVILLGLFNGQTLENDYEILLRVTR---------GEEYIKLV--MKDGRMQG 412
++ KFF Y +G+ + + DY+++ ++++ + ++
Sbjct: 324 NIVKFFDYTFASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRQILR 383
Query: 413 AVLIGETEI 421
A +G+
Sbjct: 384 AAAVGKEGA 392
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 98.3 bits (246), Expect = 2e-22
Identities = 56/308 (18%), Positives = 101/308 (32%), Gaps = 64/308 (20%)
Query: 76 VAAIDP-RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVLQE 130
V +D V + ++ L GASP+ V T ++E
Sbjct: 82 VIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIRE 141
Query: 131 KLK--SAKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSIN 186
++ + +V+IG G I E+ + ++ +V+ + + D + ++ +
Sbjct: 142 YMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKL- 200
Query: 187 KTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSE 246
+K VNL +I E
Sbjct: 201 --------------------KKH----------VNLR-----------LQEITMKIEGEE 219
Query: 247 DDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISN 306
+T+ + ++V+ A G+ PN + + I NE MQTS+ N
Sbjct: 220 RVE----KVVTDAGEYKAELVILATGIKPNIEL-AKQLGVRIGETGAIWTNEKMQTSVEN 274
Query: 307 VYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFTHM 365
VYAAGDV + + + L MG A + G + V+ T +
Sbjct: 275 VYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLG-------TAV 327
Query: 366 TKFFGYKV 373
TKF ++
Sbjct: 328 TKFMDVEI 335
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 96.9 bits (242), Expect = 9e-22
Identities = 82/406 (20%), Positives = 136/406 (33%), Gaps = 88/406 (21%)
Query: 5 YLIIGGGIAGVSCVEGLAFLHPGESI--------------GLVTP---SGIVKAVTKTVP 47
LIIGG G S L I GL P SG + + V
Sbjct: 4 ILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGL--PYHISGEIAQRSALVL 61
Query: 48 VTKLLSDITVEETDANKFEGLCTVIVDT-VAAIDP-----RVNCVITEKQNRIKYKTLCI 101
T E+ +F + V V V AID V ++ + + Y TL +
Sbjct: 62 QTP--------ESFKARF-NV-EVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLL 111
Query: 102 CTGASPRKI----WYSPHVITIRDTDSVAVLQEKLK--SAKKIVVIGNGGIATELVHELS 155
GA+P +P ++R+ + + + ++ + + V+G G I E++ L
Sbjct: 112 SPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLH 171
Query: 156 N--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213
+ + + + D A F +I ++G
Sbjct: 172 HLGIKTTLLELADQVMTPV-DREMAGFAHQAIR--------------------DQG---- 206
Query: 214 PDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY-----VKLTNGHTHACDIVV 268
V+L + ++++ + V ED + L+NG D+++
Sbjct: 207 ------VDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLI 260
Query: 269 SAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMR 328
AIGV P + + + GI VN +MQTS +YA GD + Q +
Sbjct: 261 MAIGVRPETQL-ARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVP 319
Query: 329 LWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEMFTHMTKFFGYKV 373
L A G AA M G + + T + K F V
Sbjct: 320 LAGPANRQGRMAADNMFGREERYQGTQG-------TAICKVFDLAV 358
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 95.2 bits (238), Expect = 2e-21
Identities = 62/312 (19%), Positives = 103/312 (33%), Gaps = 68/312 (21%)
Query: 76 VAAIDP-----RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVA 126
+ AI P V +++ ++ Y L I GA P ++ ++ +R
Sbjct: 79 ITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAI 138
Query: 127 VLQEKLK--SAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISATFLDPGAAEFFQ 182
L++K +VVIG+G I E + V V+ +LD +
Sbjct: 139 KLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLT 198
Query: 183 DSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERI 242
+ + + ITI VER
Sbjct: 199 EEMEA-----------------------------------NN------ITIATGETVERY 217
Query: 243 VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302
+T+ + + D+VV A+GV PN+ EL P+ I +E M+T
Sbjct: 218 EGDGRVQ----KVVTDKNAYDADLVVVAVGVRPNTAWLKGT--LELHPNGLIKTDEYMRT 271
Query: 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEM 361
S +V+A GD ++ A + L T A+ G +A K + V
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQG------ 325
Query: 362 FTHMTKFFGYKV 373
+ F YK
Sbjct: 326 -SSGLAVFDYKF 336
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 95.7 bits (239), Expect = 2e-21
Identities = 55/321 (17%), Positives = 104/321 (32%), Gaps = 77/321 (23%)
Query: 76 VAAIDP---RVNCVITEKQNRIKYKTLCICTGASPRK---------------IWYSPHVI 117
V +ID V ++ K + Y L TG+ P ++
Sbjct: 115 VQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQ 174
Query: 118 TIRDTDSVAVLQEKL--KSAKKIVVIGNGGIATELVHELSNVDI-VWVV-KDKHISATFL 173
++ + A + KL K K++ V+G G I EL V ++ A +
Sbjct: 175 FVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYY 234
Query: 174 DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
D + ++ + HG I +
Sbjct: 235 DRDLTDLMAKNMEE-----------------------------------HG------IQL 253
Query: 234 EYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCG 293
+ V+ + + +T+ + + D+V+ A+G PN+ + +L +
Sbjct: 254 AFGETVKEVAGNGKVE----KIITDKNEYDVDMVILAVGFRPNTTLGNGK--IDLFRNGA 307
Query: 294 IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEP 352
VN+ +TSI VYA GD T + + + L + A G AA G ++
Sbjct: 308 FLVNKRQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDLEGIG 367
Query: 353 VIQDFSFEMFTHMTKFFGYKV 373
V ++ +G +
Sbjct: 368 VQG-------SNGISIYGLHM 381
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 95.3 bits (238), Expect = 2e-21
Identities = 58/312 (18%), Positives = 101/312 (32%), Gaps = 68/312 (21%)
Query: 76 VAAIDP-----RVNCVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVA 126
V +D T+ Y L I TG P V ++
Sbjct: 116 VTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAE 175
Query: 127 VLQEKLKS--AKKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQ 182
+ + L++ + + +IG G I E+ + + ++ HI + D AE+
Sbjct: 176 RILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIY-DGDMAEYIY 234
Query: 183 DSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERI 242
+K H I I + V+
Sbjct: 235 KEADK-----------------------------------HH------IEILTNENVKAF 253
Query: 243 VDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQT 302
+E T+ T+ D+V+ ++GV PN++ + GT I VN MQT
Sbjct: 254 KGNERVE----AVETDKGTYKADLVLVSVGVKPNTDF-LEGTNIRTNHKGAIEVNAYMQT 308
Query: 303 SISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVG-AVKNEPVIQDFSFEM 361
++ +VYAAGD T + + + + T A G A M+ + +
Sbjct: 309 NVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLG------ 362
Query: 362 FTHMTKFFGYKV 373
T + KF +
Sbjct: 363 -TGIIKFMNLTL 373
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 71.3 bits (175), Expect = 1e-13
Identities = 54/337 (16%), Positives = 108/337 (32%), Gaps = 60/337 (17%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGE-SIGLVTPS--------------GIVKAVTKTVPVTK 50
L++GG ++ L L + + ++ S G+ V +++
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSE 64
Query: 51 LLSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQN----RIKYKTLCICTGAS 106
L + + TV ID + + V K + +Y + + GA
Sbjct: 65 ALPEKGI------------QFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAH 112
Query: 107 PR--KI-WYSPHVITIRDTDSVAVLQEKLKSAKK-IVVIGNGGIATELVHELSNVDIVWV 162
+ + + ++ + + L+EKL+S + + IG+G H
Sbjct: 113 LATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQG--HNPKPKVPENF 170
Query: 163 VKDKHISATFLDPGAA---EFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQ 219
V + + G K + + + GE L P+
Sbjct: 171 VPNADSAC----EGPVFEMSLMLHGYFKKKGMLDKV---HVTVFSPGEYLSDLSPNSRKA 223
Query: 220 VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI 279
V + I + ++ +++ I + E + G+T DI + N +
Sbjct: 224 VASIYNQLG--IKLVHNFKIKEIREHE-------IVDEKGNTIPADITILLPPYTGNPAL 274
Query: 280 QVHGTPFELAPDCG-IGVNELMQ-TSISNVYAAGDVC 314
+ + +L D G I + M NVYA GD
Sbjct: 275 K--NSTPDLVDDGGFIPTDLNMVSIKYDNVYAVGDAN 309
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 64.0 bits (156), Expect = 3e-11
Identities = 67/424 (15%), Positives = 114/424 (26%), Gaps = 106/424 (25%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPS--------------GIVKAVTKTV 46
M ++IGGG+ G++ L L P I L++ G K +V
Sbjct: 1 MAKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISV 60
Query: 47 PVTKLLSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGAS 106
P+ LL + I + +IDP N V T+ +I+Y L I TG
Sbjct: 61 PLAPLLPKFNI------------EFINEKAESIDPDANTVTTQSGKKIEYDYLVIATGPK 108
Query: 107 PRKIWYSP----HVITIRDTDSVAVLQEKLKSAKK---IVVIGN------GGIATELVHE 153
+ + + +I + Q+KL+ VVIG G A E
Sbjct: 109 LV--FGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALM 166
Query: 154 L----------SNVDIVWVVKDKHIS--ATFLDPGAAEFFQDSINKTNTAKPETIFKRMR 201
L V + ++ + ++ + E +F
Sbjct: 167 LHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLV------------EDLFAER- 213
Query: 202 YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHT 261
DW V + I + + I + + N H
Sbjct: 214 -----------NIDWIANVAV------KAIEPD-----KVIYEDLNG---------NTHE 242
Query: 262 HACDIVVSAIGVVPNSNIQVHGTPFELAPDCG--IGVNELMQ-TSISNVYAAGDVCTPSW 318
+ + ++A + VN Q + N++ G V
Sbjct: 243 VPAKFTMFMPSFQGPEVVA--SAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPP 300
Query: 319 DLAKQWFQMRLWT--QAKHMGTYAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILL 376
T + M A +V ++N P FG
Sbjct: 301 IEKTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNPDKYAPRLSAICIAD--FGEDAGFF 358
Query: 377 GLFN 380
Sbjct: 359 FADP 362
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 62.6 bits (153), Expect = 5e-11
Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 25/134 (18%)
Query: 210 PSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVS 269
D H + G + +E + + I D V L +G + A + +
Sbjct: 174 VEPDADQHALLAARG------VRVETT-RIREIAGHAD------VVLADGRSIALAGLFT 220
Query: 270 AIGVVPNSNIQVH-GTPFELAPDCG-IGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQM 327
+ + G E P I + + QT+ ++A GDV P
Sbjct: 221 QPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARP----------A 270
Query: 328 RLWTQAKHMGTYAA 341
A G A
Sbjct: 271 GSVALAVGDGAMAG 284
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 61.4 bits (150), Expect = 2e-10
Identities = 36/238 (15%), Positives = 69/238 (28%), Gaps = 60/238 (25%)
Query: 90 KQNRIKYKTLCICTGASPRKIWYSP---HVITIRDTDSVAVLQEKLKSAKKIVVIGNGGI 146
+ + TG P +D L+E+ KK+VV+G G I
Sbjct: 143 TTEVYSANHILVATGGKAIFPENIPGFELGTD---SDGFFRLEEQ---PKKVVVVGAGYI 196
Query: 147 ATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNT 204
EL + V++ + + F D D K
Sbjct: 197 GIELAGVFHGLGSETHLVIRGETVLRKF-DECIQNTITDHYVK----------------- 238
Query: 205 GGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-HA 263
G I + ++ ++ + + + + + +
Sbjct: 239 ------------------EG------INVHKLSKIVKVEKNVET-DKLKIHMNDSKSIDD 273
Query: 264 CDIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TP 316
D ++ IG + + +L I +E T++ N+Y+ GDV TP
Sbjct: 274 VDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGKVELTP 331
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 60.7 bits (148), Expect = 5e-10
Identities = 48/299 (16%), Positives = 89/299 (29%), Gaps = 78/299 (26%)
Query: 62 ANK---FEGLCTVIVDTVAAIDPRVNCVITE-KQNRIKYKTLCICTGASPRKI----WYS 113
+ G +I T R+ + + + + + TGASPR +
Sbjct: 107 SMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDG 166
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELSN----VDIVWVVKDKHIS 169
++T R + L ++V+G+G E V + V +V H+
Sbjct: 167 ERILTWRQ----LYDLDALP--DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQD--HVL 218
Query: 170 ATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDT 229
D AA ++S +
Sbjct: 219 PYE-DADAALVLEESFAER----------------------------------------- 236
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFEL 288
+ + + + + V +T+G T + IG VPN+ + + +L
Sbjct: 237 GVRLFKNARAASVTRTGA---GVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQL 293
Query: 289 APDCGIGVNELMQTSISNVYAAGDVCTPSWDLA-KQWFQMRLWTQAKHMGTYAAKCMVG 346
+ V+ + +T + +YAAGD LA A G A +G
Sbjct: 294 GRGNYLTVDRVSRTLATGIYAAGDCTGLLP-LASV----------AAMQGRIAMYHALG 341
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 59.5 bits (145), Expect = 5e-10
Identities = 12/88 (13%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNIQVHGTPFELA 289
I + + + + V+ +G + + EL
Sbjct: 194 NIPVITE-SIRTLQG--EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQF-IEQLGCELQ 249
Query: 290 PDCGIGVNELMQTSISNVYAAGDVCTPS 317
+ +++ +TS N+Y AG+ T
Sbjct: 250 SNGTFVIDDFGRTSEKNIYLAGETTTQG 277
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 59.5 bits (145), Expect = 9e-10
Identities = 51/242 (21%), Positives = 84/242 (34%), Gaps = 64/242 (26%)
Query: 87 ITEKQNRIKYKTLCICTGASPRKIWYSP---HVITIRDTDSVAVLQEKLKSA-KKIVVIG 142
++ RI + + I TGA +T S + L+ K IV++G
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSAIKGSDLCLT-----SNEIFD--LEKLPKSIVIVG 198
Query: 143 NGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200
G I E + V + + I F D + D++
Sbjct: 199 GGYIGVEFANIFHGLGVKTTLLHRGDLILRNF-DYDLRQLLNDAMVA------------- 244
Query: 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH 260
G I+I Y V ++ +E+ V LTNG
Sbjct: 245 ----------------------KG------ISIIYEATVSQVQSTENCYN---VVLTNGQ 273
Query: 261 THACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC----- 314
T D V+ A G VPN+ + + ++ + V+E M T++S+++A GDV
Sbjct: 274 TICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQL 333
Query: 315 TP 316
TP
Sbjct: 334 TP 335
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 58.7 bits (143), Expect = 2e-09
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
I I + ++ + D + + V +G T D+V+ AIG +P + ++Q+ +L
Sbjct: 250 IEIMTNENPAKVSLNTDGSKH--VTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLT 307
Query: 290 PDCGIGVNELMQTSISNVYAAGDVC-----TP 316
P G+ V+E +T++ N+YA GD+ TP
Sbjct: 308 PKGGVQVDEFSRTNVPNIYAIGDITDRLMLTP 339
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 58.3 bits (142), Expect = 2e-09
Identities = 33/189 (17%), Positives = 62/189 (32%), Gaps = 52/189 (27%)
Query: 136 KKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
+++ V+G G I EL ++ +F DP +E + +N
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF-DPMISETLVEVMNA------ 220
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
G + + + +V + D +
Sbjct: 221 -----------------------------EG------PQLHTNAIPKAVVKNTDGSLT-- 243
Query: 254 VKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
++L +G + D ++ AIG P + NI + + I V++ T+I +YA GD
Sbjct: 244 LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGD 303
Query: 313 VC-----TP 316
TP
Sbjct: 304 NTGAVELTP 312
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 58.0 bits (141), Expect = 3e-09
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
I + ++ + D T + V +G D+V+ AIG VP S +Q+ E+A
Sbjct: 246 INVRTHENPAKVTKNADGTRH--VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVA 303
Query: 290 PDCGIGVNELMQTSISNVYAAGDVC-----TP 316
+ I V+ +T++ N+YA GDV TP
Sbjct: 304 KNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTP 335
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 57.3 bits (139), Expect = 4e-09
Identities = 45/233 (19%), Positives = 70/233 (30%), Gaps = 62/233 (26%)
Query: 93 RIKYKTLCICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVH 152
K K L + GA P + + V + + +VV+G A E
Sbjct: 172 VFKAKNLILAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGC 231
Query: 153 ELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGP 210
+ V +V+ + + D + D + + +G
Sbjct: 232 FFNATGRRTVMLVRTEPLKLIK-DNETRAYVLDRMKE--------------------QG- 269
Query: 211 SLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVV 268
+ I V RI + + A V +T D V
Sbjct: 270 --------------------MEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVF 309
Query: 269 SAIGVVPNSNIQVHGTPFELAPDCG--------IGVNELMQTSISNVYAAGDV 313
+G P S ELA G + VNE +QTS+ NVYA GD+
Sbjct: 310 LGLGEQPRSA--------ELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDL 354
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 57.1 bits (138), Expect = 5e-09
Identities = 54/392 (13%), Positives = 99/392 (25%), Gaps = 87/392 (22%)
Query: 6 LIIGGGIAGVSCVEGLA-FLHPGESIGLVTPS--------------GIVKAVTKTVPVTK 50
+I+G G G+ + L G + L++ + G + P+
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRH 67
Query: 51 LLSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKI 110
+ + I + ID + N + Y L I TG
Sbjct: 68 YVERKGI------------HFIAQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA-- 113
Query: 111 W--------YSPHVITIRDTDSV----AVLQEKLKSAKKIVVIGNGGI-----ATELVHE 153
+ + V +I D A Q L+ IV+ G A E
Sbjct: 114 FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAM- 172
Query: 154 LSNVDIVW---VVKDKHISATFL--DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEK 208
V ++DK S TF+ +P + + K
Sbjct: 173 --IVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSK-GILTKGLKEE-------- 221
Query: 209 GPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVV 268
G + +T + + + + E I + +
Sbjct: 222 ----GIEAYTNCKVTKVEDNKMYVTQVDEKGETIKE---------------MVLPVKFGM 262
Query: 269 SAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQ-TSISNVYAAGDVCTPSWDLAKQWFQM 327
V G P + V+E + +N++AAG
Sbjct: 263 MIPAFKGVP--AVAGVEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTG 320
Query: 328 RLWT--QAKHMGTYAAKCMVGAVKNEPVIQDF 357
T + M + A + ++ Q
Sbjct: 321 APKTGYMIESMVSAAVHNIKADLEGRKGEQTM 352
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 56.5 bits (137), Expect = 8e-09
Identities = 49/266 (18%), Positives = 92/266 (34%), Gaps = 72/266 (27%)
Query: 64 KFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSP------HVI 117
F +++ + + N + E+ ++ + + I G P P + I
Sbjct: 112 SFLSENRILIKGTKDNNNKDNGPLNEE--ILEGRNILIAVGNKPVF----PPVKGIENTI 165
Query: 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATEL---VHEL-SNVDIVWVVKDKHISATFL 173
+ S +K +KKI ++G+G IA EL + L + I + I F
Sbjct: 166 S-----SDEFFN--IKESKKIGIVGSGYIAVELINVIKRLGIDSYIF--ARGNRILRKF- 215
Query: 174 DPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
D ++ + K + I I
Sbjct: 216 DESVINVLENDMKK-----------------------------------NN------INI 234
Query: 234 EYSCEVERIVDSEDDTCNAYVKLTNGHTH-ACDIVVSAIGVVPN-SNIQVHGTPFELAPD 291
+V I D + + L++G + D V+ +G P+ N+++ E +
Sbjct: 235 VTFADVVEIKKVSDKNLS--IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NN 291
Query: 292 CGIGVNELMQTSISNVYAAGDVCTPS 317
I V+E +TS++N+YA GD C
Sbjct: 292 NYIVVDENQRTSVNNIYAVGDCCMVK 317
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 55.8 bits (135), Expect = 2e-08
Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 23/184 (12%)
Query: 101 ICTGASPRKIWY----SPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATE----LVH 152
+ +G PR P V++ D VL++K K+ +IG GGI + L
Sbjct: 461 LASGIVPRTPPIDGIDHPKVLSYLD-----VLRDKAPVGNKVAIIGCGGIGFDTAMYLSQ 515
Query: 153 ELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSL 212
+ A + + + + +R G G +
Sbjct: 516 PGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTT 575
Query: 213 GPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
G T + G + + ++I DD V A D VV G
Sbjct: 576 GWIHRTTLLSRG------VKMIPGVSYQKI----DDDGLHVVINGETQVLAVDNVVICAG 625
Query: 273 VVPN 276
PN
Sbjct: 626 QEPN 629
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 54.8 bits (133), Expect = 3e-08
Identities = 40/242 (16%), Positives = 67/242 (27%), Gaps = 63/242 (26%)
Query: 87 ITEKQNRIKYKTLCICTGASPRKIWYSP---HVITIRDTDSVAVLQEKLKSA-KKIVVIG 142
+ + + + I G P P IT S L + + I++ G
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT-----SNEAFD--LPALPESILIAG 177
Query: 143 NGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRM 200
G IA E + V + + K I + F D ++ +
Sbjct: 178 GGYIAVEFANIFHGLGVKTTLIYRGKEILSRF-DQDMRRGLHAAMEE------------- 223
Query: 201 RYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGH 260
G I I ++ + D
Sbjct: 224 ----------------------KG------IRILCEDIIQSVSADADGRR--VATTMKHG 253
Query: 261 THACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC----- 314
D V+ A+G +PN+ + + I V+ +TS +YA GDV
Sbjct: 254 EIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQL 313
Query: 315 TP 316
TP
Sbjct: 314 TP 315
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 54.4 bits (132), Expect = 4e-08
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
I V + T V D V+ A+G PN+ ++ + E+
Sbjct: 222 IETHLEFAVAALERDAQGTTL--VAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQ 279
Query: 290 PDCGIGVNELMQTSISNVYAAGDVC-----TP 316
+ + + T++ VYA GD+ TP
Sbjct: 280 SNGMVPTDAYQNTNVPGVYALGDITGRDQLTP 311
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 52.5 bits (127), Expect = 1e-07
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNSNIQVHGT 284
I + +V IV D VK + D V +G++P ++ + +
Sbjct: 204 NIPYIMNAQVTEIV--GDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSF-LKDS 260
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDVCT 315
+L I V+ +TS+ VYAAGDV +
Sbjct: 261 GVKLDERGYIVVDSRQRTSVPGVYAAGDVTS 291
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 51.7 bits (124), Expect = 2e-07
Identities = 24/154 (15%), Positives = 46/154 (29%), Gaps = 35/154 (22%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPS--------------GIVKAVTKTVPVTKL 51
+++GGG G + + + P + L+ P+ G K + L
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL 65
Query: 52 LSDITVEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPR--K 109
+ V+ D+ IDP V T Y + G K
Sbjct: 66 RAH-------------GIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDK 112
Query: 110 I------WYSPHVITIRDTDSVAVLQEKLKSAKK 137
I + + + A+L+++L+
Sbjct: 113 IEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMAD 146
Score = 29.0 bits (65), Expect = 3.3
Identities = 7/42 (16%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 134 SAKKIVVIG--NGGI--ATELVHELSNVDIVWVV--KDKHIS 169
+ +K+VV+G GG A + ++++ ++ + +
Sbjct: 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVT-LIEPNTDYYT 41
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 50.8 bits (122), Expect = 6e-07
Identities = 35/188 (18%), Positives = 61/188 (32%), Gaps = 50/188 (26%)
Query: 136 KKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
K +VIG +A E L++ D+ +V+ + F D AE D +
Sbjct: 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGF-DQQMAEKVGDYMEN------ 338
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
G V +I +V +++
Sbjct: 339 --------------HG----------VKFAKLCVPDEIK---QLKVVDTENNKPGLLLVK 371
Query: 254 VKLTNG--HTHACDIVVSAIGVVPNS------NIQVHGTPFELAPDCGIGVNELMQTSIS 305
T+G + V+ A+G P + V +L + + + QT++S
Sbjct: 372 GHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGV-----KLDKNGRVVCTDDEQTTVS 426
Query: 306 NVYAAGDV 313
NVYA GD+
Sbjct: 427 NVYAIGDI 434
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 50.7 bits (122), Expect = 7e-07
Identities = 32/192 (16%), Positives = 59/192 (30%), Gaps = 57/192 (29%)
Query: 136 KKIVVIGNGGIATELVHELSN--VDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKP 193
K +V+G +A E L+ +D+ +V+ + F D A + + +
Sbjct: 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGF-DQDMANKIGEHMEE------ 262
Query: 194 ETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAY 253
G + R +VE+I
Sbjct: 263 --------------HG----------IKFI---RQFVPI-----KVEQIEAGTPGRLRVV 290
Query: 254 VKLTNGH---THACDIVVSAIGVVPNS------NIQVHGTPFELAPDCG-IGVNELMQTS 303
+ TN + V+ AIG + + V ++ G I V + QT+
Sbjct: 291 AQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGV-----KINEKTGKIPVTDEEQTN 345
Query: 304 ISNVYAAGDVCT 315
+ +YA GD+
Sbjct: 346 VPYIYAIGDILE 357
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding,
FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 49.8 bits (120), Expect = 8e-07
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNIQVHGT 284
+ + V+ I D V + N T + V IG P ++
Sbjct: 204 NVEFVLNSVVKEIKG--DKVVKQ-VVVENLKTGEIKELNVNGVFIEIGFDPPTDF-AKSN 259
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
E + I V+E M+TS+ V+AAGD
Sbjct: 260 GIETDTNGYIKVDEWMRTSVPGVFAAGDC 288
Score = 31.3 bits (72), Expect = 0.65
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 71 VIVDTVAAIDP--RVNCVITEKQNRIKYKTLCICTGASPRKI 110
V++D V I+ V T+++ K ++ + G RK+
Sbjct: 87 VLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKL 128
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 49.8 bits (120), Expect = 9e-07
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 22/103 (21%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGH------THACDIVVSAIGVVPNS------N 278
+ + +V+ + + + V G D ++ AIG VPN+
Sbjct: 243 VEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNK 302
Query: 279 IQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVC-----TP 316
+ + + I V+E T++ +YA GDVC TP
Sbjct: 303 LGI-----QTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTP 340
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase,
2-oxoglutarate dehydrogenase comple pyruvate
dehydrogenase complex; HET: FAD; 1.70A {Thermus
thermophilus} PDB: 2eq7_A*
Length = 455
Score = 49.8 bits (120), Expect = 1e-06
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
+TI V +V A V+L G D V+ A+G P + + +
Sbjct: 223 LTIRTGVRVTAVVPEAK---GARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTD 279
Query: 290 PDCGIGVNELMQTSISNVYAAGDV 313
I V+E ++T + ++YA GDV
Sbjct: 280 ERGRIPVDEHLRTRVPHIYAIGDV 303
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 49.2 bits (118), Expect = 1e-06
Identities = 39/255 (15%), Positives = 79/255 (30%), Gaps = 62/255 (24%)
Query: 73 VDTVAAIDPRVNCVITEKQNRIKYKTLCICTGA---SPRKIWYSPHVITIRDTDSVAVLQ 129
V +D T N + + + I G PRK+ ++ + + ++
Sbjct: 97 VTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVK 156
Query: 130 EKLKSA-KKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKT 188
K++V++G G A + L
Sbjct: 157 SVEDFKGKRVVIVGGGDSALDWTVGLIKN------------------------------- 185
Query: 189 NTAKPETIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDD 248
A T+ R G T + + + I + EV I +S
Sbjct: 186 --AASVTLVHRGHEFQGHG---------KTAHEVERARANGTIDVYLETEVASIEESNGV 234
Query: 249 TCNAYVKLTNG--HTHACDIVVSAIGVVP------NSNIQVHGTPFELAPDCGIGVNELM 300
+++ ++G T D ++ IG +++++ + V+ M
Sbjct: 235 LTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYEN--------ALVVDSHM 286
Query: 301 QTSISNVYAAGDVCT 315
+TS+ +YAAGD+
Sbjct: 287 KTSVDGLYAAGDIAY 301
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 49.4 bits (119), Expect = 1e-06
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNS-NIQVHGTPFELA 289
+TI + +VE I D K + V+ AIG PN + L
Sbjct: 227 VTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALT 286
Query: 290 PDCGIGVNELMQTSISNVYAAGDVCTPSWDLA-KQWFQMRLWTQAKHMGTYAAKCMVG 346
IGV++ M+T++ ++YA GDV LA A+ G AA+ + G
Sbjct: 287 DRKAIGVDDYMRTNVGHIYAIGDVNGLLQ-LAHV----------AEAQGVVAAETIAG 333
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid, thioredoxin-disulfide
reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Length = 315
Score = 48.3 bits (116), Expect = 2e-06
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNSNI---QVHGT 284
KI + S V+ + + VKL +G + + +G+ + I
Sbjct: 197 KIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKF 256
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ + V+ MQTS++ ++AAGD+
Sbjct: 257 LCNMEEGGQVSVDLKMQTSVAGLFAAGDL 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 3e-06
Identities = 75/451 (16%), Positives = 145/451 (32%), Gaps = 114/451 (25%)
Query: 57 VEETDANKFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHV 116
VEE ++ L + I P + + +Q Y + + +
Sbjct: 83 VEEVLRINYKFLMSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQV---FAKYNVSRLQPY 137
Query: 117 ITIRDTDSVAVLQEKLKSAKKIVVIGNGGIA-TELVHELSNVDIVWVVKDKHISATFLDP 175
+ +R L E L+ AK +++ G G T + + V +
Sbjct: 138 LKLRQ-----ALLE-LRPAKNVLIDGVLGSGKTWVALD--------VCLSYKVQCKM--D 181
Query: 176 GAAEFFQDSINKTNTAKPETIFKRMR--YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITI 233
F+ +N N PET+ + ++ + P+W ++ + S + K+ I
Sbjct: 182 FKI-FW---LNLKNCNSPETVLEMLQKLLYQ-------IDPNWTSRSD---HSSNIKLRI 227
Query: 234 E-YSCEVERIVDSE---------DDTCNAYV--------K--LTNGHTHACDIVVSAIGV 273
E+ R++ S+ + NA K LT D + +A
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 274 VPNSNIQVHG-TPFE----LAPDCGIGVNEL----MQTS---ISNVYAA---GDVCTPSW 318
+ + TP E L +L + T+ +S + A + T W
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLAT--W 344
Query: 319 DLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKN-EPVIQDFSFEMFTHMTKFFGYKV-I-- 374
D W + + + ++ EP F+ + F I
Sbjct: 345 D---NWKHVNCDKLTTIIES--------SLNVLEPAEYRKMFDRLS----VFPPSAHIPT 389
Query: 375 -LLGLFNGQTLENDYEILLRVTRGEEYIK--LVMKDGRMQGAVLIG-ETEIEEMCENL-- 428
LL L +++D +++ + K LV K + + E++ EN
Sbjct: 390 ILLSLIWFDVIKSDVMVVV-----NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 429 ----ILNQLDLTDIAD--DLLNPNIDIDDYF 453
I++ ++ D DL+ P +D YF
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPY--LDQYF 473
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 47.2 bits (113), Expect = 7e-06
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNS-----NIQVH 282
K+ I+++ V + +DD +G + + VV A G P I +
Sbjct: 225 KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLS 284
Query: 283 GTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ GI V+E M+T+I NV+A GD
Sbjct: 285 IS------KTGIVVDETMKTNIPNVFATGDA 309
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 46.4 bits (111), Expect = 9e-06
Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 22/110 (20%)
Query: 217 HTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVV 274
+ L + + ++ + E+ R+ E D V+ G +
Sbjct: 192 ASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYI 251
Query: 275 PNSNIQVHGTPFELAP--DCG-------IGVNELMQTSISNVYAAGDVCT 315
L P + G I V+ M TSI VYA GD+ T
Sbjct: 252 TK-----------LGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVT 290
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+
B reduced izoalloxazine bending, oxidoreductase; HET:
FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 46.3 bits (111), Expect = 9e-06
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNI---QV 281
KI VE I D + + + + N T +G N+ + +
Sbjct: 193 KIEFLTPYVVEEIK--GDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQED 250
Query: 282 HGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
+ + I V+ M+T++ ++AAGD+
Sbjct: 251 NSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDI 282
Score = 29.4 bits (67), Expect = 2.3
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 71 VIVDTVAAID--PRVNCVITEKQNRIKYKTLCICTGASPRKI 110
+ V + ++ E + K++ I TG SP++
Sbjct: 76 HEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRT 117
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 46.4 bits (111), Expect = 1e-05
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNS-NIQVHGT 284
C I + V + T D V+ AIG VP + + +
Sbjct: 240 TQFLKGCVPSHIKKLPTNQLQ--VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKA 297
Query: 285 PFELAPDCG-IGVNELMQTSISNVYAAGDVCTPSWDLA 321
P I V+ TS+ ++YA GDV +L
Sbjct: 298 GISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELT 335
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 46.5 bits (111), Expect = 1e-05
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNIQVHGT 284
+ I + + + + ++ + + A + IG++PN++ + G
Sbjct: 405 NVDIILNAQTTEVK-GDGSKVVG-LEYRDRVSGDIHSVALAGIFVQIGLLPNTHW-LEGA 461
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
E I ++ +TS+ V+AAGD
Sbjct: 462 -LERNRMGEIIIDAKCETSVKGVFAAGDC 489
Score = 28.0 bits (63), Expect = 7.2
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 86 VITEKQNRIKYKTLCICTGASPRKI 110
+ T +K +++ I TGA R +
Sbjct: 305 IETASGAVLKARSIIIATGAKWRNM 329
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 46.0 bits (110), Expect = 2e-05
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAY---VKLTNGHTHACDIVVSAIGVVPNS------NIQV 281
I + +D V+ D V+ AIG N V
Sbjct: 242 IPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGV 301
Query: 282 HGTPFELAPDCGIGVNELMQTSISNVYAAGDVC 314
+ D I V+ T+++N+YA GD+
Sbjct: 302 -----TVQKD-KIPVDSQEATNVANIYAVGDII 328
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 45.6 bits (109), Expect = 2e-05
Identities = 48/265 (18%), Positives = 86/265 (32%), Gaps = 78/265 (29%)
Query: 93 RIKYKTLCICTGASPRKIWYSPHVITIRDT---DSVAVLQEKLKSA-KKIVVIGNGGIAT 148
+ + + TGASP P + ++++ S L + +++ VIG+ +A
Sbjct: 136 VVMFDRCLVATGASPAV----PPIPGLKESPYWTSTEALA--SDTIPERLAVIGSSVVAL 189
Query: 149 ELV---HEL-SNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNT 204
EL L S V ++ ++ DP E +
Sbjct: 190 ELAQAFARLGSKVTVL--ARNTLFFRE--DPAIGEAVTAAFRA----------------- 228
Query: 205 GGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHAC 264
+G I + + ++ + + +V T
Sbjct: 229 ---EG---------------------IEVLEHTQASQVAHMDGE----FVLTTTHGELRA 260
Query: 265 DIVVSAIGVVPNS---NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTPSWDLA 321
D ++ A G PN+ + G + I +++ M+TS N+YAAGD
Sbjct: 261 DKLLVATGRTPNTRSLALDAAGV--TVNAQGAIVIDQGMRTSNPNIYAAGDCT------- 311
Query: 322 KQWFQMRLWTQAKHMGTYAAKCMVG 346
Q + A GT AA M G
Sbjct: 312 ---DQPQFVYVAAAAGTRAAINMTG 333
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 44.8 bits (107), Expect = 3e-05
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNSNIQVHGT 284
+ I + + + + ++ + H + IG++PN+N + G
Sbjct: 194 NVDIILNAQTTEVK-GDGSKVVG-LEYRDRVSGDIHNIELAGIFVQIGLLPNTNW-LEGA 250
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
E I ++ +T++ V+AAGD
Sbjct: 251 -VERNRMGEIIIDAKCETNVKGVFAAGDC 278
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 44.4 bits (106), Expect = 6e-05
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAIGVVPNS-NIQVHGTPF 286
+ + +V VD+ D V+ + G D+V+ + G P + + +
Sbjct: 233 MKFKLKTKVVG-VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGV 291
Query: 287 ELAPDCGIGVNELMQTSISNVYAAGDV 313
E I VNE T++S VYA GDV
Sbjct: 292 ETDKLGRILVNERFSTNVSGVYAIGDV 318
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 43.7 bits (104), Expect = 7e-05
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNI---QV 281
K+ + VE I D+ + VKL N T A D V IG VPN+ V
Sbjct: 202 KMKFIWDTAVEEIQ--GADSVSG-VKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTV 258
Query: 282 HGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
L D + V + + T+I ++AAGDV
Sbjct: 259 -----SLRDDGYVDVRDEIYTNIPMLFAAGDV 285
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 43.3 bits (103), Expect = 1e-04
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 24/101 (23%)
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNSNIQV 281
+K+ + + +D + L D ++ G V +
Sbjct: 200 HASKVNVLTPFVPAEL--IGEDKIEQ-LVLEEVKGDRKEILEIDDLIVNYGFVSSL---- 252
Query: 282 HGTPFELAPDCG-------IGVNELMQTSISNVYAAGDVCT 315
P + + G I V M+T+I +AAGD+CT
Sbjct: 253 --GPIK---NWGLDIEKNSIVVKSTMETNIEGFFAAGDICT 288
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 42.6 bits (101), Expect = 2e-04
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNG--HTHACDIVVSAIGVVPNS-NIQVHGTPF 286
+ + V ++ ED Y +G T + V++A G N + + T
Sbjct: 228 EFYFDAKARVISTIEKEDAVEVIYFD-KSGQKTTESFQYVLAATGRKANVDKLGLENTSI 286
Query: 287 ELAPDCGIGVNEL-MQTSISNVYAAGDV 313
EL +EL +QTS+ +++ AGD
Sbjct: 287 ELDKKNSPLFDELTLQTSVDHIFVAGDA 314
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 3e-04
Identities = 80/474 (16%), Positives = 145/474 (30%), Gaps = 179/474 (37%)
Query: 5 YLIIGG-GIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETDAN 63
I GG G E L L+ T +V + K + LS++ DA
Sbjct: 157 VAIFGGQGNTDD-YFEELRDLYQ-------TYHVLVGDLIKFS--AETLSELIRTTLDAE 206
Query: 64 KF--EGLCTVIVDTVAAI-DPR------------VNC-VITEKQNRIKYKTLCICTGASP 107
K +GL + + + +P ++C +I Q Y G +P
Sbjct: 207 KVFTQGL-----NILEWLENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFTP 260
Query: 108 RKIWYSPHVITIRDTDSV-AVL-------QEKLKSAKKIVV----IG--------NGGIA 147
++ T V AV + S +K + IG N +
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 148 TELVHE------------LSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPET 195
++ + LS + + ++ + QD +NKTN+ P
Sbjct: 321 PSILEDSLENNEGVPSPMLS-------ISN--LTQEQV--------QDYVNKTNSHLPAG 363
Query: 196 IFKRMR---YNTGGEK-----GP--SLGPDWHTQVNLHGSSRDTKIT---IEYSCEVERI 242
K++ N G K GP SL + + L + + + I +S ER
Sbjct: 364 --KQVEISLVN--GAKNLVVSGPPQSL---YGLNLTLRKAKAPSGLDQSRIPFS---ERK 413
Query: 243 VDSEDDTCNAYVKLTNG--------HTH----ACDIVVSAIGVVPNSNIQVHGTPFELAP 290
+K +N H+H A D++ + +N+ + A
Sbjct: 414 -----------LKFSNRFLPVASPFHSHLLVPASDLINKD---LVKNNVSFN------AK 453
Query: 291 DCGI-------GVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRL-WTQAKHMG-TYAA 341
D I G + ++ ++ + + ++ + W T+
Sbjct: 454 DIQIPVYDTFDGSD--LRVLSGSI-------SER--IVDCIIRLPVKWETTTQFKATH-- 500
Query: 342 KCMVGAVKNEPVIQDF------SFEMFTHMTKF-FGYKVILLGLFNGQTLENDY 388
I DF + TH K G +VI+ G + ++DY
Sbjct: 501 ------------ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP-DDDY 541
Score = 39.6 bits (92), Expect = 0.002
Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 52/151 (34%)
Query: 293 GIGVNELMQTSISNVYAAGDVCTPSWDLAKQWFQMRLWTQAKHMGTYAAKCMVGAVKNEP 352
G+G+ +L +TS AA DV W+ A F+ G V N P
Sbjct: 1630 GMGM-DLYKTS----KAAQDV----WNRADNHFKDTY-------GFSILDI----VINNP 1669
Query: 353 VIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDYEILLRVTRGEEYIKLVMKDGRMQG 412
++T FG + G+ + +Y ++ T + DG+++
Sbjct: 1670 ----------VNLTIHFGGE-------KGKRIRENYSAMIFET---------IVDGKLKT 1703
Query: 413 AVLIGETEIEEMCENLILN----QLDLTDIA 439
+ EI E + L T
Sbjct: 1704 EKIFK--EINEHSTSYTFRSEKGLLSATQFT 1732
Score = 34.6 bits (79), Expect = 0.077
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 10/96 (10%)
Query: 11 GIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTVPVTKLLSDITVEETD-----ANKF 65
G+ V + + P + + ++ + ++ + + T N +
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEA-LQYVVERVG-KRTGWLVEIVN-Y 1846
Query: 66 --EGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTL 99
E V + A+D N + K +I L
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 31.6 bits (71), Expect = 0.64
Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 30/126 (23%)
Query: 339 YAAKCMVGAVKNEPVIQDFSFEMFTHMTKFFGYKVILLGLFNGQTLENDY--EILLRVTR 396
A+ + P + + +F + + G L+ +F GQ +DY E LR
Sbjct: 127 ITAR----IMAKRPFDKKSNSALFRAVGE--G-NAQLVAIFGGQGNTDDYFEE--LR-DL 176
Query: 397 GEEYIKLVMKDGRMQGAVLIGETEIEEMCENLILNQLDLT-------DIADDLLNPNIDI 449
+ Y LV LI E LI LD +I + L NP+
Sbjct: 177 YQTYHVLV--------GDLI--KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 450 D-DYFD 454
D DY
Sbjct: 227 DKDYLL 232
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 42.1 bits (99), Expect = 4e-04
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 260 HTHACDIVVSAIG-VVPNSNIQVHGTPFELAPDCGIGVNEL-MQTSISNVYAAGDVCT 315
D+V+SA G V+ + ++ +P + V+ MQTS V+A GD+
Sbjct: 427 VHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVG 484
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 41.0 bits (97), Expect = 7e-04
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNS-NIQVHGT 284
I + +V V S D A V T ++V+ A G P++ + +
Sbjct: 254 IDFKLGAKVTGAVKSGD---GAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKA 310
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
L + ++ QTSI+ VYA GDV
Sbjct: 311 GVVLDSRGRVEIDRHFQTSIAGVYAIGDV 339
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 39.7 bits (93), Expect = 0.002
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 232 TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273
I EV I E+ V + ++ D+ +S +GV
Sbjct: 205 KILTRKEVVEIN-IEEKK----VYTRDNEEYSFDVAISNVGV 241
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 39.0 bits (92), Expect = 0.003
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 23/95 (24%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTN---GHTHACDIVVSAIGVVPNSNIQVHGTPFE 287
+ I V VK + + A D ++ A+G P + +
Sbjct: 236 LKILLGARVTGTEVKNK---QVTVKFVDAEGEKSQAFDKLIVAVGRRPVTT--------D 284
Query: 288 L-APDCG--------IGVNELMQTSISNVYAAGDV 313
L A D G I V++ TS+ VYA GDV
Sbjct: 285 LLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDV 319
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 39.3 bits (92), Expect = 0.003
Identities = 29/228 (12%), Positives = 52/228 (22%), Gaps = 54/228 (23%)
Query: 101 ICTGASPRKIWYS--------------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGG- 145
I TGA + P +T V+ K K K++V++
Sbjct: 485 IATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQ-----VMDGKKKIGKRVVILNADTY 539
Query: 146 -IATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNT 204
+A L +L+ T + N + R +
Sbjct: 540 FMAPSLAEKLA---------TAGHEVTIVSG------VHLANYMHFTLEYPNMMRRLHEL 584
Query: 205 GGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHAC 264
E+ ++ I + T+
Sbjct: 585 HVEELGDHFCSRIE---------PGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEF 635
Query: 265 DIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGD 312
D +V G L + +E + I +Y GD
Sbjct: 636 DSLVLVTGRHSEC---------TLWNELKARESEWAENDIKGIYLIGD 674
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 38.7 bits (91), Expect = 0.004
Identities = 11/89 (12%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG-----HTHACDIVVSAIGVVPNS-NIQVHGT 284
+ + S +V DD + + + ++++ A+G P +
Sbjct: 239 LDFKLSTKVIS-AKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKI 297
Query: 285 PFELAPDCGIGVNELMQTSISNVYAAGDV 313
E+ + +++ + ++ GDV
Sbjct: 298 GLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus}
PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 37.5 bits (88), Expect = 0.007
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 260 HTHACDIVVSAIGVVPNS-NIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDV 313
D V+ A+G P + + + ++ I VN M+TS+ VYA GD
Sbjct: 256 EEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGVYAIGDA 310
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 37.5 bits (88), Expect = 0.007
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 20/94 (21%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG----HTHACDIVVSAIGVVPNS------NIQ 280
+ S +V ++ D + +++ T C+ ++ ++G P + I
Sbjct: 231 MKFMTSTKVVGGTNNGD---SVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKIN 287
Query: 281 VHGTPFELAPDCG-IGVNELMQTSISNVYAAGDV 313
V + G + + + +TSI +VYA GDV
Sbjct: 288 VAKN------ERGFVKIGDHFETSIPDVYAIGDV 315
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A
{Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 458
Score = 37.5 bits (88), Expect = 0.007
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 260 HTHACDIVVSAIGVVPNS---NIQVHGTPFELAPDC-GIGVNELMQTSISNVYAAGDV 313
D V+ A+G P + N++ L + I ++E QTS+ NV+A GDV
Sbjct: 253 LRLEADRVLVAVGRRPRTKGFNLECLD----LKMNGAAIAIDERCQTSMHNVWAIGDV 306
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 37.1 bits (87), Expect = 0.009
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 16/93 (17%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAIGVVPNS------NIQV 281
+ + +V D + ++ +G CD+++ IG P + + +
Sbjct: 235 FKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGI 294
Query: 282 HGTPFELAPDCG-IGVNELMQTSISNVYAAGDV 313
G I VN QT I N+YA GDV
Sbjct: 295 ELD------PRGRIPVNTRFQTKIPNIYAIGDV 321
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 36.5 bits (85), Expect = 0.020
Identities = 28/232 (12%), Positives = 50/232 (21%), Gaps = 76/232 (32%)
Query: 101 ICTGASPRKIWYS------------PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGG--I 146
TGA+ R + V+ D + +L KK+VV + +
Sbjct: 482 TATGATWRTDGVARFHTTALPIAEGMQVLGPDD-----LFAGRLPDGKKVVVYDDDHYYL 536
Query: 147 ATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGG 206
+ L+ K + + P G
Sbjct: 537 GGVVAELLA---------QKGYEVSIVTP-----------------------------GA 558
Query: 207 EKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTH--AC 264
+ + + + V + C
Sbjct: 559 QVSSWTNNT-FEVNRIQRRLIENGVARVTDHAVVAV----GAGGVTVRDTYASIERELEC 613
Query: 265 DIVVSAIGVVPNSNIQVHGTPFELAPDCGIGVNELMQTSISNVYAAGDVCTP 316
D VV +P + +L G I++V GD P
Sbjct: 614 DAVVMVTARLPREELY-----LDLVARRDAG-------EIASVRGIGDAWAP 653
Score = 28.4 bits (64), Expect = 5.3
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 20/111 (18%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKA----VTKTVPVTKLLSDITVEETD 61
++ + V G + +VTP V + + + + L + V
Sbjct: 527 VVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVA--- 583
Query: 62 ANKFEGLCTVIVDT-VAAIDP---RVNCVITEKQNRIKYKTLCICTGASPR 108
+ D V A+ V + ++ + + T PR
Sbjct: 584 ---------RVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR 625
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 35.8 bits (83), Expect = 0.023
Identities = 33/204 (16%), Positives = 65/204 (31%), Gaps = 41/204 (20%)
Query: 86 VITEKQNRIKYKTLCICTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSA---------- 135
V+ + + + TG W + + +S A +Q L SA
Sbjct: 111 VVARDGRQWLARAVISATGT-----WGEAYTPEYQGLESFAGIQ--LHSAHYSTPAPFAG 163
Query: 136 KKIVVIGNGGIATELVHELSNV-DIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPE 194
++ +IG G +++ E+S V + W+ + FL + + E
Sbjct: 164 MRVAIIGGGNSGAQILAEVSTVAETTWITQH---EPAFLAD---DVDGRVL-------FE 210
Query: 195 TIFKRMRYNTGGEKGPSLGPDWHTQVNLHGSSRDTKIT--IEYSCEVERIVDSEDDTCNA 252
+R + G + P L P + + D + + R +
Sbjct: 211 RATERWKAQQEGRE-PDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTG------ 263
Query: 253 YVKLTNGHTHACDIVVSAIGVVPN 276
++ +G A D V+ G P
Sbjct: 264 -MQWADGTERAFDAVIWCTGFRPA 286
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 35.9 bits (84), Expect = 0.025
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNG---HTHACDIVVSAIGVVPNS-NIQVHGTPF 286
+ + + + + ED V T D V+ +G PN+ + +
Sbjct: 226 VEVVTNALAKGAEERED---GVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGI 282
Query: 287 ELAPDCGIGVNELMQTSISNVYAAGDV 313
++ I V++ +TS+ N++A GD+
Sbjct: 283 KMTNRGLIEVDQQCRTSVPNIFAIGDI 309
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 35.8 bits (82), Expect = 0.030
Identities = 32/202 (15%), Positives = 56/202 (27%), Gaps = 27/202 (13%)
Query: 97 KTLCICTGASPR------KIWYSPHVI-TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATE 149
+ L + G +PR + V + + +A KI +IG G A E
Sbjct: 182 RALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAE 241
Query: 150 LVHELS----NVDIVWVVKDKHISATFLDPGAAEFF----QDSINKTNTAKPETIFKRMR 201
+L+ +V +++ + P E F D I A+ E + +
Sbjct: 242 AFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYH 301
Query: 202 YNTGGEKGPSLGPDWHTQVNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLT---- 257
L + S + VER + ++L
Sbjct: 302 NTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQG-----IELALRDA 356
Query: 258 ---NGHTHACDIVVSAIGVVPN 276
D V+ A G
Sbjct: 357 GSGELSVETYDAVILATGYERQ 378
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 35.6 bits (83), Expect = 0.031
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 13/61 (21%)
Query: 260 HTHACDIVVSAIGVVPNS------NIQVHGTPFELAPDCG-IGVNELMQTSISNVYAAGD 312
D V+ A G PN V T D G I V++ M+T++ ++YA GD
Sbjct: 271 EPQRYDAVLVAAGRAPNGKLISAEKAGVAVT------DRGFIEVDKQMRTNVPHIYAIGD 324
Query: 313 V 313
+
Sbjct: 325 I 325
Score = 28.7 bits (65), Expect = 4.3
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 64 KFEGLCTVIVDTVAAIDPRVNCVITEKQNRIKYKTLCICTGASPRKIWYSPHV-ITIRDT 122
+F + V A EK+ + +K I G+ K+ P + R
Sbjct: 118 QFLDPHHLEVSLTAGDAYEQAAPTGEKK-IVAFKNCIIAAGSRVTKL---PFIPEDPRII 173
Query: 123 DSVAVLQEKLKSA-KKIVVIGNGGIATEL 150
DS L LK K+++IG G I E+
Sbjct: 174 DSSGAL--ALKEVPGKLLIIGGGIIGLEM 200
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 34.4 bits (80), Expect = 0.064
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
I EV ++ ++D +V N C ++ A G
Sbjct: 120 DKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG 165
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 34.7 bits (78), Expect = 0.065
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGIVKAVTKTV 46
F ++IG G G +C L L PG S+ LV G+ T+
Sbjct: 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATI 80
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 33.6 bits (78), Expect = 0.11
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 22/106 (20%)
Query: 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTH------ACDIVVSAIGVVP 275
L + I + + +E + D V+L + + AIG P
Sbjct: 190 LMDKVENGNIILHTNRTLEEVTG--DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP 247
Query: 276 NSNIQVHGTPFE--LAPDCG-IGVNELM-----QTSISNVYAAGDV 313
N+ I FE L + G I V + QTSI V+AAGDV
Sbjct: 248 NTAI------FEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDV 287
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 33.3 bits (76), Expect = 0.18
Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 25/214 (11%)
Query: 108 RKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIA-----TELVHELSNVDIVWV 162
R + P V+ D A+ + + +++V++G G T + EL+++D V V
Sbjct: 164 RILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDV 223
Query: 163 VKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLGPDWHTQ-VN 221
V D D AA + K N + + + + T +
Sbjct: 224 VIDPAELDGITDEDAAA--VGKVCKQNI----KVLRGYADREPRPGHRRMVFRFLTSPIE 277
Query: 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNG-HTHACDIVVSAIGVVPNSNIQ 280
+ G + +I + R D + K T +VV ++G
Sbjct: 278 IKGKRKVERI------VLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGV---P 328
Query: 281 VHGTPFELAPDCGIGVNEL-MQTSISNVYAAGDV 313
G PF+ G N N Y G +
Sbjct: 329 TPGLPFD--DQSGTIPNVGGRINGSPNEYVVGWI 360
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 32.5 bits (75), Expect = 0.23
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNI---QV 281
KI + ++ V + +K+ N T + AIG P + V
Sbjct: 209 KIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGV 268
Query: 282 HGTPFELAPDCGIGVNE-LMQTSISNVYAAGDV 313
EL D + QTS+ V+AAGDV
Sbjct: 269 -----ELDSDGYVVTKPGTTQTSVPGVFAAGDV 296
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 32.5 bits (75), Expect = 0.31
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 264 CDIVVSAIGVVPNSNIQVHGTP-FELAPDCGIGVNE-LMQTSISNVYAAGDV 313
D+V+ A+G P P ++ + V+ T++ V+AAGD+
Sbjct: 367 ADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 32.3 bits (74), Expect = 0.32
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273
I EV +I+ E+ + + H D+V+S +G
Sbjct: 211 GKIHTGQEVSKIL-IENGKAAGI--IADDRIHDADLVISNLGH 250
>3f6z_B MLIC, putative uncharacterized protein; beta barrel, allergen,
antimicrobial, bacteriolytic enzyme, glycosidase,
hydrolase; 2.50A {Pseudomonas aeruginosa}
Length = 101
Score = 30.1 bits (67), Expect = 0.40
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 218 TQVNLHGSSRDTKITIEYSCE----VERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273
+ L G ++ +++Y CE ++ D A V +++ T V+SA G
Sbjct: 6 DYLALPGDAKLDTRSVDYKCENGRKFTVQYLNKGDNSLAVVPVSDNSTLVFSNVISASGA 65
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase;
HET: MIR; 1.35A {Pseudoalteromonas SP}
Length = 185
Score = 31.0 bits (70), Expect = 0.45
Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 125 VAVLQEKLKSAKKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDS 184
V +LQ+K + + +V+ N I+ E + +++ + ++ GA + +
Sbjct: 25 VKLLQDKYDAEQSDIVLINASISGETSGGALR-RLDALLEQYEPTHVLIELGANDGLRGF 83
Query: 185 INKTNTAKPETIFKRMRYN------TGGEKGPSLGPDWHTQVN 221
K + K+ + P+ GP +
Sbjct: 84 PVKKMQTNLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFT 126
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 31.7 bits (73), Expect = 0.50
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 17/93 (18%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNI---QV 281
KI + V + D T +++ + +T V AIG P S + +
Sbjct: 205 KIRFLTNHTVVAVDG--DTTVTG-LRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAI 261
Query: 282 HGTPFELAPDCGIGVNE-LMQTSISNVYAAGDV 313
++ PD + V TS+ V+AAGD+
Sbjct: 262 -----DVDPDGYVLVQGRTTSTSLPGVFAAGDL 289
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase,
posttranslational modification, binding domain, rossmann
fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB:
3rig_A* 2b4y_A* 2nyr_A*
Length = 273
Score = 31.0 bits (71), Expect = 0.70
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 118 TIRDTDSVAVLQEKLKSAKKIVVIGNGGIATE 149
T R + S+A ++ AK IV+I G++ E
Sbjct: 4 TARPSSSMADFRKFFAKAKHIVIISGAGVSAE 35
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 30.9 bits (70), Expect = 0.72
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 138 IVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPG 176
+V+ G E + EL ++ + +D+++ L G
Sbjct: 118 VVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSG 156
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET: FAD
CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 31.0 bits (71), Expect = 0.73
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 16/93 (17%)
Query: 230 KITIEYSCEVERIVDSEDDTCNAYVKLTNGHT-----HACDIVVSAIGVVPNSNI---QV 281
KI I Y+ D +++ N + AIG P + I QV
Sbjct: 223 KIEILYNTVALEAKG--DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQV 280
Query: 282 HGTPFELAPDCGIGVNE-LMQTSISNVYAAGDV 313
+ I TS+ +AAGDV
Sbjct: 281 -----DTDEAGYIKTVPGSSLTSVPGFFAAGDV 308
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 31.1 bits (71), Expect = 0.84
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 232 TIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI--QVHG 283
++++ V R + D V T+G + + D++++A G +S + V G
Sbjct: 141 SVQFGKRVTRCEEDAD---GVTVWFTDGSSASGDLLIAADGS--HSALRPWVLG 189
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 30.1 bits (67), Expect = 1.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLV 33
E +I+G G G+S L+ L P I +V
Sbjct: 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIV 110
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 30.2 bits (67), Expect = 1.4
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 1 MEFTYLIIGGGIAGVSC 17
+ L+IG G G+
Sbjct: 9 ISVDVLVIGAGPTGLGA 25
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 30.1 bits (67), Expect = 1.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGLV 33
L+IG G AG+ L P +I +V
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIV 31
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.8 bits (67), Expect = 1.7
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 2/42 (4%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
+T V ++ +D +G + G
Sbjct: 179 VTGTPQGRVVTLIFENNDVKG--AVTADGKIWRAERTFLCAG 218
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione
reductase type II family, thiazole synthase,
mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces
cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 29.8 bits (66), Expect = 1.8
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLV 33
+I+G G +G+S +A P + ++
Sbjct: 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCII 96
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 29.9 bits (66), Expect = 2.1
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 136 KKIVVIGNGGIATELVHELSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAK 192
K ++++G+G + + L++ I V +A+ + +
Sbjct: 4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVAC-------RTLESAKKLSAGVQHSTPIS 53
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 29.8 bits (67), Expect = 2.1
Identities = 28/224 (12%), Positives = 56/224 (25%), Gaps = 27/224 (12%)
Query: 102 CTGASPRKIWYSPHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIAT--------ELVHE 153
P + D A+ + K + ++G G + +
Sbjct: 160 VARILLT----PPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQ 215
Query: 154 LSNVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNTAKPETIFKRMRYNTGGEKGPSLG 213
L + D + A + TA + + + + G
Sbjct: 216 LPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASR--AWG 273
Query: 214 PDWHTQ-VNLHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
+ + S + + V + C +V+S+IG
Sbjct: 274 LRFFRSPQQVLPSPDGRRAA---GIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIG 330
Query: 273 --VVPNSNIQVHGTPFELAPDCGIGVNEL-MQTSISNVYAAGDV 313
P PF+ P G+ N + +Y +G V
Sbjct: 331 YKSRPIDP----SVPFD--PKLGVVPNMEGRVVDVPGLYCSGWV 368
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 29.9 bits (68), Expect = 2.1
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 2 EFTYLIIGGGIAGVSCVEGLAFLHPGESIGLVTPSGI 38
LIIG G AG+S LA + +++ +
Sbjct: 8 SCDVLIIGSGAAGLSLALRLA---DQHQVIVLSKGPV 41
Score = 28.0 bits (63), Expect = 6.7
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 293 GIGVNELMQTSISNVYAAGDV-CT 315
G+ V++ +T + +YA G+V T
Sbjct: 356 GVMVDDHGRTDVEGLYAIGEVSYT 379
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 29.8 bits (68), Expect = 2.1
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 227 RDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIG 272
+D + I + VE I T V L G + VV A+G
Sbjct: 145 KDLGVKIRTNTPVETIEYENGQT--KAVILQTGEVLETNHVVIAVG 188
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase,
covalently linked FAD, C4A-adduct, flavoprotein,
oxidoreductase; HET: FAO; 1.86A {Arthrobacter
globiformis} PDB: 3nne_A* 3ljp_A*
Length = 546
Score = 29.8 bits (68), Expect = 2.2
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLA 22
EF Y+++GGG AG +A
Sbjct: 12 REFDYIVVGGGSAG--AA--VA 29
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 29.2 bits (64), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLA 22
M IIG GIAG+S + L
Sbjct: 1 MTVPIAIIGTGIAGLSAAQALT 22
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 29.6 bits (67), Expect = 2.6
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 222 LHGSSRDTKITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGV 273
L +R + I + E D + L G D++V A GV
Sbjct: 113 LVNRARALGVDISVNSEAVAA----DPV--GRLTLQTGEVLEADLIVGADGV 158
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 29.2 bits (65), Expect = 2.8
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
Query: 136 KKIVVIGNGGIATELVHELS-----NVDIVWVVKDKHISATFLDPGAAEFFQDSINKTNT 190
+ V++G G + L+ + V ++ + F I N
Sbjct: 14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNY 73
Query: 191 AK 192
+
Sbjct: 74 LE 75
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 29.4 bits (66), Expect = 2.9
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 114 PHVITIRDTDSVAVLQEKLKSAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISAT 171
+ DSV + +A+ +V+ + EL+ S N WV D +
Sbjct: 223 GRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANASFTWVASDGWGAQE 282
Query: 172 FLDPGAAEFFQDSI 185
+ G+ +I
Sbjct: 283 SIIKGSEHVAYGAI 296
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 29.2 bits (65), Expect = 3.1
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 4 TYLIIGGGIAGVSCVEGLAFLHPGESIGLV 33
+I+GGGI G++ P +I L+
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLL 35
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 28.9 bits (63), Expect = 3.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 6 LIIGGGIAGVSCVEGLA 22
LI+G G+ G C L
Sbjct: 5 LIVGAGMTGSLCAALLR 21
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis,
structural genomics, NYSGXRC, LPC1_camje, PSI, protein
structure initiative; 2.10A {Campylobacter jejuni} SCOP:
c.80.1.3
Length = 188
Score = 28.4 bits (64), Expect = 3.4
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 125 VAVLQEKLKSAKKIVVIGNGG-------IATELVH 152
+L E LK KI++ GNGG A EL
Sbjct: 32 GELLCECLKKGGKILICGNGGSAADAQHFAAELSG 66
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin,
acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ;
1.85A {Saccharomyces cerevisiae}
Length = 354
Score = 29.1 bits (65), Expect = 3.4
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 121 DTDSVAVLQEKLKSAKKIVVIGNGGIATE 149
+ ++ +KL +A+KI+V+ G++T
Sbjct: 32 NFFTIDHFIQKLHTARKILVLTGAGVSTS 60
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 28.8 bits (65), Expect = 3.5
Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 231 ITIEYSCEVERIVDSEDDTCNAYVKLTNGHTHACDIVVSAIGVVPNSNI--QVHGTP 285
S + + + ++ ++G + V+ A G S + ++ G
Sbjct: 112 ERYHTSKCLVGLSQDSET---VQMRFSDGTKAEANWVIGADGG--ASVVRKRLLGIE 163
Score = 28.5 bits (64), Expect = 4.4
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPG 27
++GG I+G++ L G
Sbjct: 9 AVVGGSISGLTA--ALMLRDAG 28
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A
{Escherichia coli} PDB: 2i22_A 1x94_A
Length = 212
Score = 28.5 bits (64), Expect = 3.5
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 125 VAVLQEKLKSAKKIVVIGNGG-------IATELVH 152
+L + K+ K++ GNGG A EL
Sbjct: 54 AVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTG 88
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 28.7 bits (65), Expect = 3.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 5 YLIIGGGIAGVSC 17
YL+IG GIAG S
Sbjct: 12 YLVIGAGIAGAST 24
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 29.0 bits (65), Expect = 3.8
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 134 SAKKIVVIGNGGIATELVHELS--NVDIVWVVKDKHISATFLDPGAAEFFQDSI 185
+A+ +V+ + EL+ + N WV D + + G+ +I
Sbjct: 244 NARVVVLFMRSDDSRELIAAANRVNASFTWVASDGWGAQESIVKGSEHVAYGAI 297
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A
{Francisella tularensis subsp}
Length = 201
Score = 28.5 bits (64), Expect = 4.1
Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 123 DSVAVLQEKLKSAKKIVVIGNGG-------IATELVH 152
+ + L++ K++V GNG ++L++
Sbjct: 34 QAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLN 70
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide
bonding, putative phosphosugar BIND protein, DNAA
binding protein; 1.85A {Escherichia coli}
Length = 196
Score = 28.1 bits (63), Expect = 4.2
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 123 DSVAVLQEKLKSAKKIVVIGNGG-------IATELVH 152
+ L + L + KI+ GNG A +++
Sbjct: 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMIN 65
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural
genomics, SIS domain, A/B protein, lipopolysaccharide
biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas
aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Length = 199
Score = 28.1 bits (63), Expect = 4.2
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 123 DSVAVLQEKLKSAKKIVVIGNGG-------IATELVH 152
+ V+ L + KI+ GNGG ++EL++
Sbjct: 33 QASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLN 69
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 28.7 bits (63), Expect = 4.3
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLA 22
+ +IIG G G+ L
Sbjct: 8 LTPKIVIIGAGPTGLGAAVRLT 29
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A
{Burkholderia pseudomallei} PDB: 2x3y_A
Length = 198
Score = 28.0 bits (63), Expect = 4.7
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 125 VAVLQEKLKSAKKIVVIGNGG-------IATELVH 152
+ K+++ GNGG IA E V
Sbjct: 38 ADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVS 72
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 28.4 bits (63), Expect = 5.4
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 136 KKIVVIGNGGIATELVHELSNVDIVWVV 163
K++++G G I + +L + V++
Sbjct: 17 MKVLILGAGNIGRAIAWDLKDEFDVYIG 44
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A
{Dictyostelium discoideum}
Length = 281
Score = 28.1 bits (62), Expect = 6.0
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 14/125 (11%)
Query: 85 CVITEKQNRIKYKTLCICTGASPRKI----WYSPHVITIRDTDSVAVLQEKLKSAKKIVV 140
T+ IK P W S T + K++
Sbjct: 137 VYGTKVSEGIKITVCISTCIYKPNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFE 196
Query: 141 IGNGGIAT--ELVHELSNVDIVWVVKD--KHISATFLDPGAAEFFQDSINKTNTAKPETI 196
GN + T + + D + K I L+ +++ + +T
Sbjct: 197 DGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELN------LHTALDNNYSTMGDTT 250
Query: 197 FKRMR 201
FK +R
Sbjct: 251 FKALR 255
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon,
hyperthermophIle, PGI family; 1.16A {Pyrobaculum
aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Length = 302
Score = 28.0 bits (61), Expect = 6.1
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 118 TIRDTDSVAVLQE--KLKSAKKIVVIGNGG--IATELVHELSNVDIVWV 162
+ S V E ++++ ++ + G GG + +L+ + S V
Sbjct: 18 RVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADLIRDFSLTWNWEV 66
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 28.4 bits (63), Expect = 6.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 6 LIIGGGIAGVSCVEGLAFLHPGESIGL 32
+IIGGGI G++ + +++ L
Sbjct: 9 VIIGGGITGLAAAFYMEKEIKEKNLPL 35
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 28.4 bits (63), Expect = 6.2
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 136 KKIVVIGNGGIATELVHELSNV 157
+ ++V+G A +LV L+ V
Sbjct: 213 ESVLVVGGASSANDLVRHLTPV 234
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.9 bits (61), Expect = 7.6
Identities = 6/34 (17%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 130 EKLKSAKKIVVIGNGGIATELVHELS---NVDIV 160
E K ++++G+G +A ++ L+ ++++
Sbjct: 18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVT 51
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 27.8 bits (62), Expect = 7.7
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 1 MEFTYLIIGGGIAGVS 16
F Y+++G G+ G++
Sbjct: 22 PRFDYVVVGAGVVGLA 37
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 27.9 bits (63), Expect = 8.2
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 293 GIGVNELMQTSISNVYAAGDV-CT 315
GI VN +++I N+YA G+V +
Sbjct: 318 GIRVNIRGESNIVNLYAIGEVSDS 341
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 27.7 bits (62), Expect = 8.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 1 MEFTYLIIGGGIAGVSC 17
M++ +IIG G G +
Sbjct: 1 MKYDLIIIGSGSVGAAA 17
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 27.7 bits (61), Expect = 8.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 1 MEFTYLIIGGGIAGVSCVEGLAFLHPGESIGLV 33
M T +++GGGI+G++ L+ + LV
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLV 33
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A
3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Length = 531
Score = 27.8 bits (61), Expect = 9.9
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 129 QEKLKSAKKIVVIGNGGIATELV 151
QE L+SA + +I TE++
Sbjct: 27 QEALESAH-VCLINATATGTEIL 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.409
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,127,910
Number of extensions: 438617
Number of successful extensions: 1801
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1696
Number of HSP's successfully gapped: 226
Length of query: 454
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 357
Effective length of database: 3,993,456
Effective search space: 1425663792
Effective search space used: 1425663792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)