BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15450
(659 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4UMK8|RNH_ANASK Ribonuclease H OS=Anaeromyxobacter sp. (strain K) GN=rnhA PE=3 SV=1
Length = 183
Score = 49.7 bits (117), Expect = 8e-05, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 296 EAFAILQALKYVSSIKENEVIIITDSKSCLEKL---------KNTSKSNGNPSHLILDIF 346
E A+L+AL+ + ++ EVI +DS+ ++ L K ++G P L D+
Sbjct: 57 ELRAVLEALEGLPGGEQVEVI--SDSRYVVDALSRWIHGWRKKGWRTASGEPV-LNRDLI 113
Query: 347 KALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARG 386
+AL + +SVR+ WVRGH G A NE VD+LA+ ARG
Sbjct: 114 EALD-ARASALSVRYTWVRGHDGHAVNEVVDQLAQAAARG 152
>sp|B8J731|RNH_ANAD2 Ribonuclease H OS=Anaeromyxobacter dehalogenans (strain 2CP-1 /
ATCC BAA-258) GN=rnhA PE=3 SV=1
Length = 183
Score = 48.5 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 13/100 (13%)
Query: 296 EAFAILQALKYVSSIKENEVIIITDSKSCLEKL---------KNTSKSNGNPSHLILDIF 346
E A+L+AL+ + ++ EVI +DS+ ++ L K ++G P L D+
Sbjct: 57 ELRAVLEALEGLPGGEQVEVI--SDSRYVVDALSRWIHGWRKKGWRTASGEPV-LNRDLI 113
Query: 347 KALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARG 386
+AL + ++VR+ WVRGH G A NE VD+LA+ ARG
Sbjct: 114 EALD-ARASALTVRYTWVRGHDGHAVNEVVDQLAQAAARG 152
>sp|Q2IJL8|RNH_ANADE Ribonuclease H OS=Anaeromyxobacter dehalogenans (strain 2CP-C)
GN=rnhA PE=3 SV=1
Length = 183
Score = 46.2 bits (108), Expect = 9e-04, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 13/100 (13%)
Query: 296 EAFAILQALKYVSSIKENEVIIITDSKSCLEKL---------KNTSKSNGNPSHLILDIF 346
E A+L+AL+ + V +I+DS+ ++ L K ++G P L D+
Sbjct: 57 ELRAVLEALEGLPG--GEAVQVISDSRYVVDALSRWIHGWRRKGWRTASGEPV-LNRDLI 113
Query: 347 KALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARG 386
+AL + ++SV + WVRGH G A NE VD+LA+ ARG
Sbjct: 114 EALD-ARARDLSVTYTWVRGHDGHAVNEVVDQLAQAAARG 152
>sp|B2S2V0|RNH_TREPS Ribonuclease H OS=Treponema pallidum subsp. pallidum (strain SS14)
GN=rnhA PE=3 SV=1
Length = 169
Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 296 EAFAILQALKYVSSIKENEVIIITDS---KSCLEKLKNTSKSNGNPSHLIL-----DIFK 347
E A++ AL+ V+++TDS + + + +T K NG + D+++
Sbjct: 63 ELCAVINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNKDLWE 122
Query: 348 ALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
ALS L + +SV + WV+GHAG NE DRLA + AR
Sbjct: 123 ALSALAD-ALSVEWRWVKGHAGDPYNELCDRLATDAAR 159
>sp|O83372|RNH_TREPA Ribonuclease H OS=Treponema pallidum (strain Nichols) GN=rnhA PE=3
SV=1
Length = 169
Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 296 EAFAILQALKYVSSIKENEVIIITDS---KSCLEKLKNTSKSNGNPSHLIL-----DIFK 347
E A++ AL+ V+++TDS + + + +T K NG + D+++
Sbjct: 63 ELCAVINALQEAHGRAAEAVVVVTDSQYVRKGITQWIHTWKHNGWKTAAKQPVKNKDLWE 122
Query: 348 ALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
ALS L + +SV + WV+GHAG NE DRLA + AR
Sbjct: 123 ALSALAD-ALSVEWRWVKGHAGDPYNELCDRLATDAAR 159
>sp|A7HB50|RNH_ANADF Ribonuclease H OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rnhA
PE=3 SV=1
Length = 175
Score = 43.1 bits (100), Expect = 0.008, Method: Composition-based stats.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 25/125 (20%)
Query: 272 WIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVI-IITDSKSCLEKL-- 328
W+ D GT+ + N E A+L+AL + E E + +++DS+ ++ L
Sbjct: 46 WVTD------GTYAVTNNRM----ELRAVLEAL---DGLPEGEAVDVVSDSRYVVDALSK 92
Query: 329 -------KNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAK 381
K + G P L D+ +AL + + VR+ WVRGH G NE VD LA+
Sbjct: 93 WIHGWRKKGWRTAAGEPV-LNRDLIEALD-ARGRELRVRYSWVRGHDGHPVNEVVDALAQ 150
Query: 382 ETARG 386
ARG
Sbjct: 151 SAARG 155
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 42.7 bits (99), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQE 354
AE A+L ALK S E+ IITDS+ L L N P L+ +++ + E
Sbjct: 632 AEVQALLLALKAGSE----EMNIITDSQYILNIL------NQQPD-LMEGLWQEVLEQME 680
Query: 355 WNISVRFIWVRGHAGIAGNEAVDRL 379
I++ WV GH GI GNE VD+L
Sbjct: 681 KKIAIFIDWVPGHKGIPGNEEVDKL 705
>sp|Q83GM3|RNH_TROWT Ribonuclease H OS=Tropheryma whipplei (strain Twist) GN=rnhA PE=3
SV=1
Length = 161
Score = 42.0 bits (97), Expect = 0.016, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 272 WIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSCLE----- 326
W D +SG + + AT AE A+ + L + + ++I++DSK +
Sbjct: 25 WYVDENTWDSGGW---DIATNNIAELTAVRELL-IATRHTDRPILILSDSKYVINSLTKW 80
Query: 327 ----KLKNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKE 382
K++ K++G P L +I + + L E N ++R WV H G NEA D LA++
Sbjct: 81 VYSWKMRKWRKADGKPV-LNQEIIQEIDSLME-NRNIRMSWVNAHTGHPLNEAADSLARQ 138
Query: 383 TA 384
A
Sbjct: 139 AA 140
>sp|Q83HK9|RNH_TROW8 Ribonuclease H OS=Tropheryma whipplei (strain TW08/27) GN=rnhA PE=3
SV=1
Length = 161
Score = 42.0 bits (97), Expect = 0.016, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 272 WIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSCLE----- 326
W D +SG + + AT AE A+ + L + + ++I++DSK +
Sbjct: 25 WYVDENTWDSGGW---DIATNNIAELTAVRELL-IATRHTDRPILILSDSKYVINSLTKW 80
Query: 327 ----KLKNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKE 382
K++ K++G P L +I + + L E N ++R WV H G NEA D LA++
Sbjct: 81 VYSWKMRKWRKADGKPV-LNQEIIQEIDSLME-NRNIRMSWVNAHTGHPLNEAADSLARQ 138
Query: 383 TA 384
A
Sbjct: 139 AA 140
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 280 NSGTFKLKNF--ATIFTAEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGN 337
N G ++ K+ T AE +A+ ALK + +V I+TDS+ + L+ + +
Sbjct: 1074 NRGRYRSKDLENTTNQQAELWAVDLALKDSGA----QVNIVTDSQYVMGVLQGLPDQSDS 1129
Query: 338 PSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
P ++ I + L+ ++ WV H GI GNE VD+L + R
Sbjct: 1130 P--IVEQIIQKLTQ----KTAIYLAWVPAHKGIGGNEEVDKLVSKNIR 1171
>sp|O60930|RNH1_HUMAN Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2
Length = 286
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 285 KLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSCLEKL--------KNTSKSNG 336
+L T AE A +A++ + N++++ TDS + + KN K++
Sbjct: 175 RLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSA 234
Query: 337 NPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTD 388
+ + F AL L + + ++++ V GH+G GNE DRLA+E A+ ++
Sbjct: 235 GKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQSE 285
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 40.4 bits (93), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQE 354
AE AIL AL+ KE V I+TDS+ L + +S+ + S ++ I + L+ ++
Sbjct: 1063 AELMAILLALQ---DSKET-VNIVTDSQYALGVI--SSQPTQSESPIVQQIIEELTKKEQ 1116
Query: 355 WNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
V WV H GI GNE +D+L + R
Sbjct: 1117 ----VYLTWVPAHKGIGGNEKIDKLVSKDIR 1143
>sp|A9W185|RNH_METEP Ribonuclease H OS=Methylobacterium extorquens (strain PA1) GN=rnhA
PE=3 SV=1
Length = 228
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 359 VRFIWVRGHAGIAGNEAVDRLA 380
VR+ WVRGHAG AGNE DRLA
Sbjct: 116 VRWTWVRGHAGEAGNERADRLA 137
>sp|Q1H190|RNH_METFK Ribonuclease H OS=Methylobacillus flagellatus (strain KT / ATCC
51484 / DSM 6875) GN=rnhA PE=3 SV=1
Length = 151
Score = 40.0 bits (92), Expect = 0.066, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 13/96 (13%)
Query: 296 EAFAILQALKYVSSIKENEVIIITDS----KSCLE-----KLKNTSKSNGNPSHLILDIF 346
E A+++AL+ + ++ V I TDS K E K +N S+ P + D++
Sbjct: 49 ELTAVIRALEALK--RQCSVRIYTDSVYVQKGITEWVHSWKARNWLTSDRKPVKNV-DLW 105
Query: 347 KALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKE 382
KAL L + + V ++WV+GHAG GNE D LA +
Sbjct: 106 KALDSLVQQH-QVEWVWVKGHAGNVGNERADALANK 140
>sp|B8HPS9|RNH_CYAP4 Ribonuclease H OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=rnhA PE=3 SV=1
Length = 157
Score = 39.3 bits (90), Expect = 0.090, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 296 EAFAILQALKYVSSIKENEVIIITDSKSCLE---------KLKNTSKSNGNPSHLILDIF 346
E A + AL++ + VI+ TDS+ + K K + G P L D++
Sbjct: 50 EMQAAIAALEFCQAAGHPPVILYTDSEYVKKGITEWLPGWKRKGWKTAQGKPV-LNQDLW 108
Query: 347 KALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARG 386
+ L L SV + +VRGH+G AGNE D +A+ A G
Sbjct: 109 QVLDQLN--TKSVNWQYVRGHSGNAGNERCDAIARAFAAG 146
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 39.3 bits (90), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 299 AILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNIS 358
A LQA++ +EV I+TDS+ L ++ ++ + + S L+ I + L ++
Sbjct: 1059 AELQAIQLALQDSGSEVNIVTDSQYALGIIQ--AQPDKSESELVNQIIEQLIKKEK---- 1112
Query: 359 VRFIWVRGHAGIAGNEAVDRLAKETAR 385
V WV H GI GNE VD+L R
Sbjct: 1113 VYLSWVPAHKGIGGNEQVDKLVSAGIR 1139
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 39.3 bits (90), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQE 354
AE A+L AL+ + +V I+TDS+ L + + + +P ++ I + L+ +
Sbjct: 1065 AELMAVLIALQD----SKEQVNIVTDSQYVLGIISSQPTQSDSP--IVQQIIEELTKKER 1118
Query: 355 WNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
V WV H GI GNE +D+L + R
Sbjct: 1119 ----VYLTWVPAHKGIGGNEKIDKLVSKDIR 1145
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 299 AILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNIS 358
A LQA++ E EV I+TDS+ L ++ + + + S ++ I + L ++
Sbjct: 1063 AELQAIQLALQDSEVEVNIVTDSQYALGIIQ--GQPDTSESEIVNQIIEELIKKEK---- 1116
Query: 359 VRFIWVRGHAGIAGNEAVDRLAKETAR 385
V WV H GI GNE +D+L R
Sbjct: 1117 VYLSWVPAHKGIGGNEQIDKLVSSGIR 1143
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 299 AILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNIS 358
A LQA++ +EV I+TDS+ L ++ ++ + + + L+ I + L ++
Sbjct: 1062 AELQAIQLALQDSRSEVNIVTDSQYALGIIQ--AQPDRSEAELVNQIIEQLIKKEK---- 1115
Query: 359 VRFIWVRGHAGIAGNEAVDRLAKETAR 385
V WV H GI GNE VD+L R
Sbjct: 1116 VYLSWVPAHKGIGGNEQVDKLVSSGIR 1142
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1067 LQAIHLALQDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEK----VY 1120
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VDRL R
Sbjct: 1121 LAWVPAHKGIGGNEQVDRLVSTGIR 1145
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA++ +EV I+TDS+ L ++ ++ + + S L+ I + L + V
Sbjct: 1062 LQAIQLALQDSGSEVNIVTDSQYALGIIQ--AQPDKSESELVNQIIEQLIKKER----VY 1115
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1116 LSWVPAHKGIGGNEQVDKLVSSGIR 1140
>sp|Q3KE77|RNH_PSEPF Ribonuclease H OS=Pseudomonas fluorescens (strain Pf0-1) GN=rnhA
PE=3 SV=1
Length = 153
Score = 38.9 bits (89), Expect = 0.13, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 294 TAEAFAILQALKYVSSIKEN-EVIIITDSKSCLEKL--------KNTSKSNGNPSHLILD 344
T +L A++ + ++K EV+++TDS+ ++ + K K+ D
Sbjct: 46 TNNRMELLGAIRGLEALKRPCEVLLVTDSQYVMKGINEWMANWKKRGWKTAAKEPVKNAD 105
Query: 345 IFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTDALNPY 393
++KAL Q V + WVRGH G GNE D+LA RG D + Y
Sbjct: 106 LWKALDE-QVNRHKVTWKWVRGHIGHHGNERADQLAN---RGVDEVRGY 150
>sp|Q2LWY9|RNH_SYNAS Ribonuclease H OS=Syntrophus aciditrophicus (strain SB) GN=rnhA
PE=3 SV=1
Length = 173
Score = 38.9 bits (89), Expect = 0.14, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 281 SGTFKLKNFATIFTAEAFAILQALKYVSSI---KENEVIIITDSKSCLEKLK-NTSKSNG 336
SG ++L + A L+ALK S+ +++ ++ +K ++ K N K N
Sbjct: 55 SGGYRLTTNNRMEILAAIKGLEALKSACSVTLYSDSQYLVNAINKGWAQRWKANGWKRNA 114
Query: 337 NPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTD 388
L D+++ L L + + F+WVRGHA NE D L+KE A D
Sbjct: 115 REKALNPDLWERLLELCSRH-DITFVWVRGHANNKENERCDVLSKEAAGRAD 165
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1063 LQAINLALQDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEK----VY 1116
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L + R
Sbjct: 1117 LAWVPAHKGIGGNEQVDKLVSQGIR 1141
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ +EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1061 LQAIHLALQDSGSEVNIVTDSQYALGIIQ--AQPDKSESELVNQIIEQLIQKEK----VY 1114
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1115 LSWVPAHKGIGGNEQVDKLVSSGIR 1139
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1067 LQAINLALQDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEK----VY 1120
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L + R
Sbjct: 1121 LAWVPAHKGIGGNEQVDKLVSQGIR 1145
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 294 TAEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQ 353
T A L A++ EV I+TDS+ L ++ +G S L+ I + L +
Sbjct: 1059 TTNQKAELHAIQLALQDSRPEVNIVTDSQYALGIIQAQPDRSG--SELVNQIIEQLIKKE 1116
Query: 354 EWNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
+ V WV H GI GNE VD+L R
Sbjct: 1117 K----VYLSWVPAHKGIGGNEQVDKLVSSGIR 1144
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1068 LQAIHLALQDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEK----VY 1121
Query: 361 FIWVRGHAGIAGNEAVDRLAKETARGTDALN 391
WV H GI GNE VD+L R LN
Sbjct: 1122 LAWVPAHKGIGGNEQVDKLVSAGIRKVLFLN 1152
>sp|Q5NYP6|RNH_AROAE Ribonuclease H OS=Aromatoleum aromaticum (strain EbN1) GN=rnhA PE=3
SV=1
Length = 153
Score = 38.5 bits (88), Expect = 0.20, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 344 DIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTDAL 390
D+++AL + V+++WVRGHAG NE D LA+ RG DA+
Sbjct: 102 DLWRALDEAASRH-QVQWVWVRGHAGHVENERADELAR---RGVDAV 144
>sp|Q0AMI4|RNH_MARMM Ribonuclease H OS=Maricaulis maris (strain MCS10) GN=rnhA PE=3 SV=1
Length = 149
Score = 38.1 bits (87), Expect = 0.20, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 296 EAFAILQALKYVSSIKENEVIIITDS---KSCLEKLKNTSKSNG------NPSHLILDIF 346
E A +QAL+ + + VI+ITDS + + K + K G P + D++
Sbjct: 47 EMMAAIQALEALRK-ADRSVILITDSVYLRDGITKWIHGWKKRGWKTADKKPVKNV-DLW 104
Query: 347 KALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKE---TARG 386
+ L L + ++ + WV+GHAG GNE D LA+E ARG
Sbjct: 105 QRLDELTRSH-TIDWRWVKGHAGDPGNERADELAREGLAEARG 146
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1066 LQAINLALQDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVNQIIEQLIKKEK----VY 1119
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L + R
Sbjct: 1120 LAWVPAHKGIGGNEQVDKLVSQGIR 1144
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate EK505)
GN=gag-pol PE=3 SV=3
Length = 1448
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQE 354
AE A+L AL+ EV I+TDS+ L + S+ + + S L+ I + L +
Sbjct: 1073 AELQAVLMALQDAG----QEVNIVTDSQYVLGIIH--SQPDKSESELVNQIIEELIKKER 1126
Query: 355 WNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
+S WV H GI GNE +D+L R
Sbjct: 1127 IYLS----WVPAHKGIGGNEQIDKLVSTGIR 1153
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 280 NSGTFKLKNFATIF--TAEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGN 337
++G K K + AE AI AL+ ++ +V I+TDS C + + G
Sbjct: 641 SNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYYCWKNITEGLGLEGP 697
Query: 338 PSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAK 381
S + + +++E I V F WV GH GI GN+ D AK
Sbjct: 698 QSPW----WPIIQNIREKEI-VYFAWVPGHKGICGNQLADEAAK 736
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%)
Query: 280 NSGTFKLKNFATIF--TAEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGN 337
++G K K + AE AI AL+ ++ +V I+TDS C + + G
Sbjct: 641 SNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYYCWKNITEGLGLEGP 697
Query: 338 PSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAK 381
S + + +++E I V F WV GH GI GN+ D AK
Sbjct: 698 QSPW----WPIIQNIREKEI-VYFAWVPGHKGICGNQLADEAAK 736
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQE 354
AE AIL AL+ +V I+TDS+ + + S+ + + S L+ I + L +
Sbjct: 1074 AELQAILMALQESG----RDVNIVTDSQYAMGIIH--SQPDKSESELVSQIIEELIKKER 1127
Query: 355 WNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
V WV H GI GNE VD+L R
Sbjct: 1128 ----VYLSWVPAHKGIGGNEQVDKLVSSGIR 1154
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L +++ +S
Sbjct: 1067 LQAIYLALQESGPEVNIVTDSQYALGIIQ--AQPDKSESELVNQIIEELIKKEKFYLS-- 1122
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1123 --WVPAHKGIGGNEQVDKLVSSGIR 1145
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 285 KLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILD 344
K K + T A LQA+ +EV I+TDS+ L ++ ++ + + S ++
Sbjct: 1045 KQKVVSLTETTNQKAELQAIYLALQDSGSEVNIVTDSQYALGIIQ--AQPDKSESEIVNQ 1102
Query: 345 IFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
I + L + V WV H GI GNE VD+L R
Sbjct: 1103 IIEQLIQKER----VYLSWVPAHKGIGGNEQVDKLVSAGVR 1139
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 261 GYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITD 320
G C +E + TQ +L+N T A L A+K +V I+TD
Sbjct: 1057 GACNRQSKEGKAGYITQQGKQRVQQLEN-----TTNQQAELTAIKMALEDSGPKVNIVTD 1111
Query: 321 SKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLA 380
S+ + L T++ + S L+ I + + ++ WV H GI GNE +D+L
Sbjct: 1112 SQYAMGIL--TAQPTQSDSPLVEQIIAQMVQKE----AIYLQWVPAHKGIGGNEEIDKLV 1165
Query: 381 KETAR 385
+ R
Sbjct: 1166 SKGVR 1170
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1065 LQAIHLALQDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEK----VY 1118
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1119 LAWVPAHKGIGGNEQVDKLVSAGIR 1143
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1070 LQAIHLALQDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEK----VY 1123
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1124 LAWVPAHKGIGGNEQVDKLVSAGIR 1148
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1066 LQAIHLALQDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEK----VY 1119
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1120 LAWVPAHKGIGGNEQVDKLVSAGIR 1144
>sp|Q5BK46|RNH1_RAT Ribonuclease H1 OS=Rattus norvegicus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 284 FKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKN---TSKSNGNPSH 340
+L T AE A +A+ + +++++ TDS + + N K NG +
Sbjct: 173 IRLPGRQTNQRAEIHAACKAITQAKAQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTS 232
Query: 341 LILDI-----FKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTDA 389
D+ F L L + + ++++ + GH+G GNE DRLA+E A+ ++
Sbjct: 233 TGKDVINKEDFMELDELTQ-GMDIQWMHIPGHSGFVGNEEADRLAREGAKQSEG 285
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ EV I+TDS+ L ++ ++ + + S L+ I + L ++ V
Sbjct: 1072 LQAIHLALQDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEK----VY 1125
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1126 LAWVPAHKGIGGNEQVDKLVSAGIR 1150
>sp|O70338|RNH1_MOUSE Ribonuclease H1 OS=Mus musculus GN=Rnaseh1 PE=2 SV=1
Length = 285
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 284 FKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKN---TSKSNGNPSH 340
+L T AE A +A+ + +++++ TDS + + N K NG +
Sbjct: 173 IRLPGRQTNQRAEIHAACKAIMQAKAQNISKLVLYTDSMFTINGITNWVQGWKKNGWRTS 232
Query: 341 LILDI-----FKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTD 388
D+ F L L + + ++++ + GH+G GNE DRLA+E A+ ++
Sbjct: 233 TGKDVINKEDFMELDELTQ-GMDIQWMHIPGHSGFVGNEEADRLAREGAKQSE 284
>sp|Q0RJ31|RNH_FRAAA Ribonuclease H OS=Frankia alni (strain ACN14a) GN=rnhA PE=3 SV=1
Length = 157
Score = 37.4 bits (85), Expect = 0.37, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 359 VRFIWVRGHAGIAGNEAVDRLAKETARGTDALNPYPIP 396
V ++WVRGHAG GNE D LA ARG P P
Sbjct: 122 VEWLWVRGHAGDPGNERADALA---ARGLQEARQTPPP 156
>sp|Q73K21|RNH_TREDE Ribonuclease H OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=rnhA PE=3 SV=1
Length = 160
Score = 37.4 bits (85), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 344 DIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKET 383
D+++ L L +I +IWV+GHAG NEA DRLA E
Sbjct: 117 DLWQELDSLSA-SIKPEWIWVKGHAGNPLNEACDRLAVEA 155
>sp|Q9QBZ1|POL_HV1M2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP257) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA++ +EV I+TDS+ L ++ + + + S ++ I + L + V
Sbjct: 1065 LQAIQLALQDSGSEVNIVTDSQYALGIIQ--AHPDKSESEIVNQIIEQLIQKER----VY 1118
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1119 LSWVPAHKGIGGNEQVDKLVSTGIR 1143
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA++ +EV I+TDS+ L + ++ + + S ++ I + L + V
Sbjct: 1070 LQAIQLALQDSGSEVNIVTDSQYALGII--LAQPDKSESEIVNQIIEQLISKER----VY 1123
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1124 LSWVPAHKGIGGNEQVDKLVSSGIR 1148
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 37.0 bits (84), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 301 LQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVR 360
LQA+ +EV I+TDS+ L ++ ++ + + S L+ I + L V
Sbjct: 1061 LQAIHLALQDSGSEVNIVTDSQYALGIIQ--AQPDKSESELVNQIIEQLIKKDR----VY 1114
Query: 361 FIWVRGHAGIAGNEAVDRLAKETAR 385
WV H GI GNE VD+L R
Sbjct: 1115 LSWVPAHKGIGGNEQVDKLVSSGIR 1139
>sp|Q0AE34|RNH_NITEC Ribonuclease H OS=Nitrosomonas eutropha (strain C91) GN=rnhA PE=3
SV=1
Length = 162
Score = 37.0 bits (84), Expect = 0.49, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 359 VRFIWVRGHAGIAGNEAVDRLAKE 382
V + WVRGH G AGNE DRLA +
Sbjct: 128 VEWFWVRGHNGHAGNERADRLANQ 151
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248,952,306
Number of Sequences: 539616
Number of extensions: 10720356
Number of successful extensions: 23900
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 23848
Number of HSP's gapped (non-prelim): 212
length of query: 659
length of database: 191,569,459
effective HSP length: 124
effective length of query: 535
effective length of database: 124,657,075
effective search space: 66691535125
effective search space used: 66691535125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)