Query psy15450
Match_columns 659
No_of_seqs 428 out of 2451
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:25:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 2E-22 7E-27 191.5 9.4 135 243-387 5-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 2.7E-22 9.3E-27 190.2 8.0 130 241-386 8-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.8 9.1E-22 3.1E-26 185.2 8.3 129 246-386 5-144 (146)
4 3p1g_A Xenotropic murine leuke 99.8 2.2E-21 7.6E-26 186.6 9.2 130 245-388 23-158 (165)
5 2lsn_A Reverse transcriptase; 99.8 3.5E-21 1.2E-25 185.2 8.9 135 246-386 8-163 (165)
6 1jl1_A Ribonuclease HI; RNAse 99.8 3.9E-21 1.3E-25 183.0 9.2 131 246-388 5-145 (155)
7 2e4l_A Ribonuclease HI, RNAse 99.8 5.2E-21 1.8E-25 182.8 9.0 129 246-386 7-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.8 2.8E-21 9.7E-26 186.2 6.8 135 242-388 5-150 (166)
9 2kq2_A Ribonuclease H-related 99.8 6.7E-20 2.3E-24 173.1 1.5 132 244-388 5-139 (147)
10 2ehg_A Ribonuclease HI; RNAse 99.7 5.9E-18 2E-22 159.5 8.7 129 245-387 1-135 (149)
11 3hst_B Protein RV2228C/MT2287; 99.7 1E-17 3.5E-22 155.6 9.5 129 246-386 4-133 (141)
12 3u3g_D Ribonuclease H, RNAse H 99.7 8.2E-18 2.8E-22 155.6 8.0 128 246-386 4-137 (140)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 6.3E-17 2.2E-21 183.6 8.1 121 243-384 434-555 (555)
14 2zd1_A Reverse transcriptase/r 99.7 7.4E-17 2.5E-21 183.1 7.6 120 243-383 437-557 (557)
15 1zbf_A Ribonuclease H-related 99.4 5.3E-14 1.8E-18 131.8 2.7 125 244-378 10-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.3 1.7E-12 5.8E-17 119.9 5.0 98 246-353 6-106 (134)
17 3kyl_A Telomerase reverse tran 97.6 5.2E-05 1.8E-09 83.1 6.3 84 81-197 242-328 (596)
18 1rw3_A POL polyprotein; RNA an 48.1 5.8 0.0002 43.0 1.5 41 289-330 386-427 (455)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.87 E-value=2e-22 Score=191.49 Aligned_cols=135 Identities=23% Similarity=0.277 Sum_probs=106.1
Q ss_pred HHHHHhhhhhcccCCCc----cceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEE
Q psy15450 243 FAILQALKYASSIKEKE----AGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIII 318 (659)
Q Consensus 243 ~g~l~iytDGS~~~~g~----~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~ 318 (659)
.+.+.+|||||+.+++. +|+|+++... ... .....+.+.+||++|||.|++.||+.+...+..++.|+
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~-------~~~-~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~ 76 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPG-------HPL-NVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLY 76 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTT-------CTT-CEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECC-------Cce-eEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEE
Confidence 35678999999986653 4555554321 111 12334555789999999999999999988778999999
Q ss_pred cChHHHHHHHhcC---------CcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHhccC
Q psy15450 319 TDSKSCLEKLKNT---------SKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGT 387 (659)
Q Consensus 319 TDSq~ai~~I~~~---------~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~~ 387 (659)
|||+++++.|+.| ++++|.++ .+.++++.+..+.. +..|.|.|||||+|++|||.||+||++|+..+
T Consensus 77 tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~-~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 77 TNSMFTINGITNWVQGWKKNGWKTSAGKEV-INKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp ESCHHHHHHHHTHHHHHHTTTSBCTTSSBC-TTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred ECcHHHHhhhhhhHHHHHhccccccCCCcc-ccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 9999999999974 34556665 46788888888765 57799999999999999999999999998754
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.86 E-value=2.7e-22 Score=190.17 Aligned_cols=130 Identities=24% Similarity=0.198 Sum_probs=96.6
Q ss_pred hhHHHHHhhhhhcccC-CCccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEc
Q psy15450 241 EAFAILQALKYASSIK-EKEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIIT 319 (659)
Q Consensus 241 e~~g~l~iytDGS~~~-~g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~T 319 (659)
+..+.+.+|+|||+.+ +|..|+|++....... . .. .+.+||++||+.|++.||+.+ ..++.|+|
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~--------~--~~-~~~~Tnn~aEl~A~i~AL~~~----~~~v~i~t 72 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQK--------V--VT-LTDTTNQKTELQAIYLALQDS----GLEVNIVT 72 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEE--------E--EE-ESSCCHHHHHHHHHHHHHHHS----CSEEEEEE
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEE--------E--Ee-CCCCCHHHHHHHHHHHHHHhC----CCcEEEEe
Confidence 3456789999999976 4555666555432110 1 11 247899999999999999986 48999999
Q ss_pred ChHHHHHHHhcC---------CcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHhcc
Q psy15450 320 DSKSCLEKLKNT---------SKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARG 386 (659)
Q Consensus 320 DSq~ai~~I~~~---------~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~ 386 (659)
||+|+++.|+.| ++++|+++ .+.++++.+..+..+...|.|.|||||+|++|||+||+||++|++.
T Consensus 73 DS~~v~~~i~~w~~~W~~~gw~~~~g~~v-~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 73 DSQYALGIITQWIHNWKKRGWKTADKKPV-KNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp SCHHHHHHHHHHHHHHCC-------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred CcHHHHHHHHHHHHHHhhcCcCcCcCccc-ccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 999999999985 33555565 4678888776655568899999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.85 E-value=9.1e-22 Score=185.19 Aligned_cols=129 Identities=16% Similarity=0.169 Sum_probs=98.1
Q ss_pred HHhhhhhcccCC-CccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcChHHH
Q psy15450 246 LQALKYASSIKE-KEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSC 324 (659)
Q Consensus 246 l~iytDGS~~~~-g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TDSq~a 324 (659)
+.+|||||+..+ |..|+|+++...+.. ......+ +.+||++|||.|++.||+.+.+ ..++.|+|||+|+
T Consensus 5 i~iytDGs~~~n~g~~g~G~v~~~~~~~-------~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~v 74 (146)
T 3h08_A 5 ITIYTDGAASGNPGKGGWGALLMYGSSR-------KEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYL 74 (146)
T ss_dssp EEEEEEEEESSTTEEEEEEEEEEETTEE-------EEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHH
T ss_pred EEEEEecCCCCCCCceEEEEEEEECCee-------EEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHH
Confidence 579999999864 566777766543311 1112222 3689999999999999999976 5899999999999
Q ss_pred HHHHhc-C---------CcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHhcc
Q psy15450 325 LEKLKN-T---------SKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARG 386 (659)
Q Consensus 325 i~~I~~-~---------~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~ 386 (659)
++.|+. | ++++|.++ .+.++++.+..+.. ...|.|.|||||+|+++||.||+||++|+..
T Consensus 75 i~~i~~~w~~~W~~~~w~~~~~~~v-~n~~l~~~~~~~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 75 VNAMNEGWLKRWVKNGWKTAAKKPV-ENIDLWQEILKLTT-LHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHSSHHHHHHHTTCC----CCC-TTHHHHHHHHHHHH-HSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCccCCCCCc-CCHHHHHHHHHHHh-hCceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 999987 3 34556665 46788888887765 4679999999999999999999999999874
No 4
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.84 E-value=2.2e-21 Score=186.64 Aligned_cols=130 Identities=22% Similarity=0.120 Sum_probs=102.6
Q ss_pred HHHhhhhhcccC-CCccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcChHH
Q psy15450 245 ILQALKYASSIK-EKEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKS 323 (659)
Q Consensus 245 ~l~iytDGS~~~-~g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TDSq~ 323 (659)
.+.+|+|||+.+ +|..|+|+++...+.. .. .. .....+||++||+.|++.||+.+. ..++.|||||+|
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~------~~-~~-~~~~~~Tnn~aEl~Ai~~AL~~~~---~~~v~I~tDS~~ 91 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEV------IW-AR-ALPAGTSAQRAELIALTQALKMAE---GKKLNVYTDSRY 91 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCE------EE-EE-EECTTCCHHHHHHHHHHHHHHHTB---TSEEEEEECCHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEE------EE-Ee-cCCCCCcHHHHHHHHHHHHHHHcc---CceEEEEEchHH
Confidence 478999999985 6777777766543311 11 11 345578999999999999999982 689999999999
Q ss_pred HHHHHhcCCcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCC-----ccchhhhhhHHHHHhccCC
Q psy15450 324 CLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAG-----IAGNEAVDRLAKETARGTD 388 (659)
Q Consensus 324 ai~~I~~~~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~g-----i~GNE~AD~LAk~aa~~~~ 388 (659)
+++.| |..++|+++ .+.++|+.+.....++..|.|.|||||+| ++|||+||+||++|+....
T Consensus 92 vi~~i--w~~~~g~~v-~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 92 AFATA--HVHSEGREI-KNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp HHHHH--HSCCCSCCC-SSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhh--hcccCCCcc-cCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 99999 556777777 46787776644334678999999999999 9999999999999998643
No 5
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.83 E-value=3.5e-21 Score=185.20 Aligned_cols=135 Identities=21% Similarity=0.121 Sum_probs=100.5
Q ss_pred HHhhhhhcccCC-Cc-----cceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEc
Q psy15450 246 LQALKYASSIKE-KE-----AGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIIT 319 (659)
Q Consensus 246 l~iytDGS~~~~-g~-----~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~T 319 (659)
+.+||||||.+| |+ +|+|+++...+. ............+..++++||+.|+..||+.+.+. +.+|.|+|
T Consensus 8 vviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~----~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~T 82 (165)
T 2lsn_A 8 GVFYTDGSAIKSPDPTKSNNAGMGIVHATYKP----EYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVIT 82 (165)
T ss_dssp EEEEEEEEEEECSSCTTCEEEEEEEEEECCSS----SCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEE
T ss_pred EEEEEcCCCCCCCCCCCCCcEEEEEEEEECCC----ccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEe
Confidence 568999999864 44 566666542221 00000011112346789999999999999887654 36799999
Q ss_pred ChHHHHHHHhcC---------CcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCC------ccchhhhhhHHHHHh
Q psy15450 320 DSKSCLEKLKNT---------SKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAG------IAGNEAVDRLAKETA 384 (659)
Q Consensus 320 DSq~ai~~I~~~---------~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~g------i~GNE~AD~LAk~aa 384 (659)
||+|++++|+.| ++++|+|+ .+.++|+.+.++......|.|.|||||+| .+|||+||+||++|+
T Consensus 83 DS~Yvi~~it~w~~~Wk~ngw~~~~~~pV-kN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA 161 (165)
T 2lsn_A 83 DSFYVAESANKELPYWKSNGFVNNKKKPL-KHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGS 161 (165)
T ss_dssp SCHHHHHHHHTHHHHHHHTTSCSCSSSCC-SSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHhhhhhhhhhheeccccccCCCcc-cCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhh
Confidence 999999999864 56677777 47899999888766678899999999999 468999999999998
Q ss_pred cc
Q psy15450 385 RG 386 (659)
Q Consensus 385 ~~ 386 (659)
..
T Consensus 162 ~~ 163 (165)
T 2lsn_A 162 YV 163 (165)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.83 E-value=3.9e-21 Score=183.02 Aligned_cols=131 Identities=22% Similarity=0.296 Sum_probs=103.0
Q ss_pred HHhhhhhcccC-CCccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcChHHH
Q psy15450 246 LQALKYASSIK-EKEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSC 324 (659)
Q Consensus 246 l~iytDGS~~~-~g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TDSq~a 324 (659)
+.+|||||+.+ +|..|+|+++...+... .....+ +.+||++||+.|++.||+.+.. ..++.|+|||+++
T Consensus 5 ~~iytDGs~~~n~~~~G~G~v~~~~~~~~-------~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~v 74 (155)
T 1jl1_A 5 VEIFTAGSALGNPGPGGYGAILRYRGREK-------TFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYV 74 (155)
T ss_dssp EEEEEEEEESSTTEEEEEEEEEEETTEEE-------EEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHH
T ss_pred EEEEEccccCCCCCceEEEEEEEECCeEE-------EEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHH
Confidence 56899999986 45667777765433111 111122 3679999999999999999976 4899999999999
Q ss_pred HHHHhcC---------CcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHhccCC
Q psy15450 325 LEKLKNT---------SKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTD 388 (659)
Q Consensus 325 i~~I~~~---------~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~~~ 388 (659)
++.|+.| .+++|.++ .+.++++.+..+.. ...|.|.|||||+|++|||.||+||++|+..+.
T Consensus 75 i~~i~~w~~~W~~n~~~~~~g~~v-~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 145 (155)
T 1jl1_A 75 RQGITQWIHNWKKRGWKTADKKPV-KNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPT 145 (155)
T ss_dssp HHHHHTTHHHHHHTTTBCTTSCBC-TTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhcccccccCCcc-CCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccc
Confidence 9999973 44556666 46788888888765 578999999999999999999999999998754
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.83 E-value=5.2e-21 Score=182.76 Aligned_cols=129 Identities=24% Similarity=0.310 Sum_probs=101.6
Q ss_pred HHhhhhhcccC-CCccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcChHHH
Q psy15450 246 LQALKYASSIK-EKEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSC 324 (659)
Q Consensus 246 l~iytDGS~~~-~g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TDSq~a 324 (659)
+.+|||||+.+ +|..|+|+++...+... .....+ +.+||++|||.|++.||+.+.. ..++.|+|||+++
T Consensus 7 i~iytDGs~~~n~g~~G~G~v~~~~~~~~-------~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~v 76 (158)
T 2e4l_A 7 IHIFTDGSCLGNPGPGGYGIVMNYKGHTK-------EMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYM 76 (158)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEEETTEEE-------EEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHH
T ss_pred EEEEEcccccCCCCcEEEEEEEEECCEEE-------EEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHH
Confidence 67999999985 45667777765433111 111122 2589999999999999999865 3899999999999
Q ss_pred HHHHhc---------CCcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHhcc
Q psy15450 325 LEKLKN---------TSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARG 386 (659)
Q Consensus 325 i~~I~~---------~~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~ 386 (659)
++.|+. |.+++|.++ .+.++++.+..+.. ...|.|.|||||+|+++||.||+||++|+..
T Consensus 77 i~~i~~w~~~W~~n~~~~~~g~~v-~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 77 RQGIMTWIHGWKKKGWMTSNRTPV-KNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHTHHHHHHHTTTBCTTSSBC-TTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccccccCCCcc-cCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 999998 344556666 46788888888765 4799999999999999999999999999987
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.83 E-value=2.8e-21 Score=186.15 Aligned_cols=135 Identities=23% Similarity=0.213 Sum_probs=104.3
Q ss_pred hHHHHHhhhhhcccCC-CccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcC
Q psy15450 242 AFAILQALKYASSIKE-KEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITD 320 (659)
Q Consensus 242 ~~g~l~iytDGS~~~~-g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TD 320 (659)
+-..+.+|||||+.++ |..|+|+++...+.. .. ..... ..+||++|||.|++.||+.+.. ..+|.|+||
T Consensus 5 ~m~~i~iytDGs~~~n~g~~G~G~v~~~~~~~------~~-~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~--~~~v~I~tD 74 (166)
T 1ril_A 5 PRKRVALFTDGACLGNPGPGGWAALLRFHAHE------KL-LSGGE-ACTTNNRMELKAAIEGLKALKE--PCEVDLYTD 74 (166)
T ss_dssp -CCCCCEEEEEEESSTTEEEEEEEEECBTTBC------CE-ECCEE-EEECHHHHHHHHHHHHHHSCCS--CCEEEEECC
T ss_pred CCccEEEEECccccCCCCCEEEEEEEEECCEE------EE-EecCC-CCCcHHHHHHHHHHHHHHHhcc--CCeEEEEeC
Confidence 3346789999999864 566666666432211 11 11111 3689999999999999999866 369999999
Q ss_pred hHHHHHHHhc----------CCcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHhccCC
Q psy15450 321 SKSCLEKLKN----------TSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTD 388 (659)
Q Consensus 321 Sq~ai~~I~~----------~~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~~~ 388 (659)
|+|+++.|+. |++++|.++ .+.++++.+..+.. ...|.|.|||||+|+++|+.||+||++|+....
T Consensus 75 S~~vi~~i~~~w~~~W~~~~w~~~~g~~v-~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 75 SHYLKKAFTEGWLEGWRKRGWRTAEGKPV-KNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp CHHHHHHHHSSHHHHHHHTTSBCTTSSBC-TTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hHHHHHHHhhhHHHHHHhcccccccCCcc-CcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 9999999998 455666666 46788888888765 469999999999999999999999999998754
No 9
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.76 E-value=6.7e-20 Score=173.07 Aligned_cols=132 Identities=17% Similarity=0.104 Sum_probs=94.4
Q ss_pred HHHHhhhhhcccCCCccceEEEEeccceeeeCCCccccc-cccCC--CCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcC
Q psy15450 244 AILQALKYASSIKEKEAGYCKVSIRESLWIFDTQNKNSG-TFKLK--NFATIFTAEAFAILQALKYVSSIKENEVIIITD 320 (659)
Q Consensus 244 g~l~iytDGS~~~~g~~G~g~v~~~~~~~~~~~~~~~~~-~~~l~--~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TD 320 (659)
+.+.+|||||+.+ |.+|+|+++...+.... . .. ....+ ..+||++||+.|++.||+.+.+.+. +|.|+||
T Consensus 5 ~~i~iytDGs~~~-g~~G~G~vi~~~g~~~~----~-~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tD 77 (147)
T 2kq2_A 5 TEYDVYTDGSYVN-GQYAWAYAFVKDGKVHY----E-DADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHD 77 (147)
T ss_dssp SCCEEECCCCCBT-TBCEEEEEEEETTEEEE----E-EEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSC
T ss_pred CeEEEEECCCCCC-CCcEEEEEEEECCEEEE----E-EeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEEC
Confidence 3467999999988 88899888764332110 0 00 11111 1469999999999999998877666 9999999
Q ss_pred hHHHHHHHhcCCcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHhccCC
Q psy15450 321 SKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTD 388 (659)
Q Consensus 321 Sq~ai~~I~~~~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~~~ 388 (659)
|+.+.+.+.+.|..+. .....+.+.+.++.. .|.|.|||||+|++|||.||+||++|+....
T Consensus 78 S~~i~~w~~~~w~~~~---~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 78 YAGIAFWATGEWKAKN---EFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp CSTHHHHTTSSSSCCH---HHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHhCCCccCC---cchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 9988887776544331 112233333333321 7999999999999999999999999998643
No 10
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.72 E-value=5.9e-18 Score=159.45 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=98.9
Q ss_pred HHHhhhhhccc--CCCccce-EEEEeccceeeeCCCccccccccC---CCCCcHHHHHHHHHHHHHHHchhcCCCeEEEE
Q psy15450 245 ILQALKYASSI--KEKEAGY-CKVSIRESLWIFDTQNKNSGTFKL---KNFATIFTAEAFAILQALKYVSSIKENEVIII 318 (659)
Q Consensus 245 ~l~iytDGS~~--~~g~~G~-g~v~~~~~~~~~~~~~~~~~~~~l---~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~ 318 (659)
++++|+|||+. ++|.+|+ |+++...+..+ ......+ ...+||++||+.|++.||+.+...+..++.|+
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~------~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~ 74 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKI------EGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIK 74 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEECSSCEE------EEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEECCEEE------EEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 35789999997 3577776 77765433221 1111122 24789999999999999999998888899999
Q ss_pred cChHHHHHHHhcCCcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHhccC
Q psy15450 319 TDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGT 387 (659)
Q Consensus 319 TDSq~ai~~I~~~~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~~ 387 (659)
|||+++++.+++++..+. +.+.++++.+..+..+. .|.|.|||+ ++|+.||+||++|+...
T Consensus 75 tDS~~vi~~i~~~w~~~~---~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 75 GDSQLVIKQMNGEYKVKA---KRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYELV 135 (149)
T ss_dssp ESCHHHHHHHTTSSCCCC---TTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHHH
T ss_pred eChHHHHHHHhCccccCC---HHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHhh
Confidence 999999999999865442 24677777777776544 699999998 58999999999999853
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.72 E-value=1e-17 Score=155.59 Aligned_cols=129 Identities=20% Similarity=0.201 Sum_probs=97.9
Q ss_pred HHhhhhhcccC-CCccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcChHHH
Q psy15450 246 LQALKYASSIK-EKEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSC 324 (659)
Q Consensus 246 l~iytDGS~~~-~g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TDSq~a 324 (659)
+++|||||+.+ +|.+|+|+++...+. +.........+ +.+||++||+.|++.||+.+...+..++.|+|||+++
T Consensus 4 ~~iy~DGs~~~~~g~~g~G~v~~~~~~----~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~v 78 (141)
T 3hst_B 4 VVIEADGGSRGNPGPAGYGAVVWTADH----STVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLV 78 (141)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEEETTS----CSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred EEEEEecCCCCCCCCcEEEEEEEeCCC----CcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHH
Confidence 57999999875 567788877764320 00011112222 3689999999999999999998888999999999999
Q ss_pred HHHHhcCCcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHhcc
Q psy15450 325 LEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARG 386 (659)
Q Consensus 325 i~~I~~~~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~ 386 (659)
++.+++.|.... +.+..+++.+..+..+...|.|.||| .++|+.||+||++|+..
T Consensus 79 v~~i~~~~~~~~---~~l~~~~~~i~~l~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 79 VEQMSGRWKVKH---PDLLKLYVQAQALASQFRRINYEWVP----RARNTYADRLANDAMDA 133 (141)
T ss_dssp HHHHTTSSCCCS---HHHHHHHHHHHHHHTTSSEEEEEECC----GGGCHHHHHHHHHHHHH
T ss_pred HHHHhCCcccCC---HHHHHHHHHHHHHHhcCCeEEEEEcC----CcccHHHHHHHHHHHHH
Confidence 999998643321 23556666677776667899999999 48999999999999875
No 12
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.71 E-value=8.2e-18 Score=155.60 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=95.6
Q ss_pred HHhhhhhcccC-CCccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCC----eEEEEcC
Q psy15450 246 LQALKYASSIK-EKEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKEN----EVIIITD 320 (659)
Q Consensus 246 l~iytDGS~~~-~g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~----~i~I~TD 320 (659)
+++|||||+.+ +|.+|+|+++...+... .......+ +.+||++||+.|++.||+.+...+.. ++.|+||
T Consensus 4 ~~iy~DGs~~~n~g~~G~G~v~~~~~g~~-----~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tD 77 (140)
T 3u3g_D 4 IIIYTDGGARGNPGPAGIGVVITDEKGNT-----LHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMD 77 (140)
T ss_dssp EEEEEEEEESSTTEEEEEEEEEECTTSCE-----EEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEES
T ss_pred EEEEEecCCCCCCCCcEEEEEEEeCCCCE-----EEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 57999999985 56778887775422111 11112222 25799999999999999999887666 9999999
Q ss_pred hHHHHHHHhcCCcCCCCCcccHHHHHHHHHHH-HhcCCeeeEEEeecCCCccchhhhhhHHHHHhcc
Q psy15450 321 SKSCLEKLKNTSKSNGNPSHLILDIFKALSHL-QEWNISVRFIWVRGHAGIAGNEAVDRLAKETARG 386 (659)
Q Consensus 321 Sq~ai~~I~~~~~~~g~~~~~~~~i~~~l~~l-~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa~~ 386 (659)
|+++++.+++++.... +.+..+++.+..+ ..+...|.|.||| .++|+.||+||++|+..
T Consensus 78 S~~vi~~i~~~~~~~~---~~l~~~~~~i~~l~~~~~~~v~~~~V~----~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 78 SELIVRQMQGVYKVKE---PTLKEKFAKIAHIKMERVPNLVFVHIP----REKNARADELVNEAIDK 137 (140)
T ss_dssp CHHHHHHHTTSSCCCC---GGGHHHHHHHHHHHHHHCTTCEEEECC----GGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCcccCC---HHHHHHHHHHHHHhhcCCCcEEEEEcC----chhhHHHHHHHHHHHHh
Confidence 9999999999764321 2345556666666 5555789999999 58999999999999864
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.66 E-value=6.3e-17 Score=183.60 Aligned_cols=121 Identities=21% Similarity=0.153 Sum_probs=90.5
Q ss_pred HHHHHhhhhhcccCCCc-cceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcCh
Q psy15450 243 FAILQALKYASSIKEKE-AGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDS 321 (659)
Q Consensus 243 ~g~l~iytDGS~~~~g~-~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TDS 321 (659)
.+.+.+|+|||+.++++ .|+|++....+.. ... ...+||++||+.|++.||+. +...+.|+|||
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~----------~~~-~~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS 498 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDK----------VKK-LEQTTNQQAELEAFAMALTD----SGPKVNIIVDS 498 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEE----------EEE-ESSCCHHHHHHHHHHHHHHT----SCSEEEEEESC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEe----------ecc-CCCCCHHHHHHHHHHHHHHc----CCCeEEEEEeh
Confidence 45688999999987554 4555555422111 111 23689999999999999998 46899999999
Q ss_pred HHHHHHHhcCCcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHHh
Q psy15450 322 KSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETA 384 (659)
Q Consensus 322 q~ai~~I~~~~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~aa 384 (659)
+||++.|++|.+..+ .++++.+.++...+..|.|.|||||+|++|||.||+||++|+
T Consensus 499 ~~v~~~i~~~~~~~~------~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 499 QYVMGIVASQPTESE------SKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHHHHHTCCSEES------CHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHHHHHhccccccc------HHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 999999999865433 233333333333468899999999999999999999999874
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.65 E-value=7.4e-17 Score=183.10 Aligned_cols=120 Identities=26% Similarity=0.236 Sum_probs=87.0
Q ss_pred HHHHHhhhhhcccCCC-ccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcCh
Q psy15450 243 FAILQALKYASSIKEK-EAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDS 321 (659)
Q Consensus 243 ~g~l~iytDGS~~~~g-~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TDS 321 (659)
.+.+.+|+|||+.+++ ..|+|++...+.. .. . . ...+||++||+.|++.||+.+ ..++.|+|||
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~-------~~-~--~-~~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS 501 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQ-------KV-V--P-LTNTTNQKTELQAIYLALQDS----GLEVNIVTDS 501 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCE-------EE-E--E-ECSCCHHHHHHHHHHHHHHHS----CSEEEEEECC
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcE-------EE-e--c-CCCCCHHHHHHHHHHHHHHhC----CCcEEEEeCh
Confidence 3468999999997654 4555555432211 10 1 1 246899999999999999998 5899999999
Q ss_pred HHHHHHHhcCCcCCCCCcccHHHHHHHHHHHHhcCCeeeEEEeecCCCccchhhhhhHHHHH
Q psy15450 322 KSCLEKLKNTSKSNGNPSHLILDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKET 383 (659)
Q Consensus 322 q~ai~~I~~~~~~~g~~~~~~~~i~~~l~~l~~~~~~V~~~WVPgH~gi~GNE~AD~LAk~a 383 (659)
++|++.|++|...+++ ++..++.+. + .+...|.|.|||||+|++|||+||+||++|
T Consensus 502 ~~vi~~i~~~~~~~~~--~l~~~~~~~---l-~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 502 QYALGIIQAQPDKSES--ELVNQIIEQ---L-IKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHHHHHTTCCSEESS--HHHHHHHHH---H-HHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHHHHhcCCccCCH--HHHHHHHHH---H-hcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 9999999998655322 233333333 2 235789999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.40 E-value=5.3e-14 Score=131.85 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=94.2
Q ss_pred HHHHhhhhhcccC-CCccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcChH
Q psy15450 244 AILQALKYASSIK-EKEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSK 322 (659)
Q Consensus 244 g~l~iytDGS~~~-~g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TDSq 322 (659)
+.+.||+||||.+ +|.+|.|+++...+..+. ....+ +.+||++||+.|++.||+.+.+.+. ++.|+|||+
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~-------~~~~~-~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~ 80 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLF-------EREPI-PIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQ 80 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEE-------ECCCE-EEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEE-------Eeccc-CCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehH
Confidence 5788999999875 677788888763332111 11122 2589999999999999999988766 999999999
Q ss_pred HHHHHHhcCC--cCCCCCcccHHHHHHHHHHHHh--cCCeeeEEEeecCCCccchhhhhh
Q psy15450 323 SCLEKLKNTS--KSNGNPSHLILDIFKALSHLQE--WNISVRFIWVRGHAGIAGNEAVDR 378 (659)
Q Consensus 323 ~ai~~I~~~~--~~~g~~~~~~~~i~~~l~~l~~--~~~~V~~~WVPgH~gi~GNE~AD~ 378 (659)
++++.+++.+ +..++++ .+.++|+.++.+.. +...+....|.-|++.-||.-||.
T Consensus 81 ~vi~w~~~~~~k~~~~~~v-~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 81 TAIKWVKDKKAKSTLVRNE-ETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHHHHHHTCCCCCCCCST-TTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTCC
T ss_pred HHHHHHHcCCccCCCCCCc-ccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCcccc
Confidence 9999999874 3334555 57888888776522 245677778888999999999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.28 E-value=1.7e-12 Score=119.88 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=73.8
Q ss_pred HHhhhhhcccC-CCccceEEEEeccceeeeCCCccccccccCCCCCcHHHHHHHHHHHHHHHchhcCCCeEEEEcChHHH
Q psy15450 246 LQALKYASSIK-EKEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFATIFTAEAFAILQALKYVSSIKENEVIIITDSKSC 324 (659)
Q Consensus 246 l~iytDGS~~~-~g~~G~g~v~~~~~~~~~~~~~~~~~~~~l~~~~T~~~AEL~AI~~AL~~a~~~~~~~i~I~TDSq~a 324 (659)
..||+||+|.+ ||+.|.|+|+...+.. ... ...+ +.+|||+||+.|++.||+.+.+.+.. +.|+|||+||
T Consensus 6 ~~iytDGac~GNPGp~G~ggV~~~~g~~------~~~-~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyV 76 (134)
T 4htu_A 6 ESLSVDVGSQGNPGIVEYKGVDTKTGEV------LFE-REPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTA 76 (134)
T ss_dssp SSEEEEEEEETTTEEEEEEEEETTTCCE------EEE-EEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHH
T ss_pred eEEEEeeccCCCCCCeEEEEEEEECCEE------EEE-ecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHH
Confidence 56899999875 6777776776543211 111 1122 36899999999999999999876533 8999999999
Q ss_pred HHHHhcC--CcCCCCCcccHHHHHHHHHHHH
Q psy15450 325 LEKLKNT--SKSNGNPSHLILDIFKALSHLQ 353 (659)
Q Consensus 325 i~~I~~~--~~~~g~~~~~~~~i~~~l~~l~ 353 (659)
++.|.++ +++.++|+ .+.++|+.++.+.
T Consensus 77 i~wi~~~~~kt~~~~~v-kN~dLw~~ld~~~ 106 (134)
T 4htu_A 77 IKWVKDKKAKSTLVRNE-ETALIWKLVDEAE 106 (134)
T ss_dssp HHHHHHTCCCCCCCCSS-TTHHHHHHHHHHH
T ss_pred HHHHHcCCcccCCCCCc-cCHHHHHHHHHHH
Confidence 9999975 56677777 6899999988664
No 17
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=97.61 E-value=5.2e-05 Score=83.07 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=59.9
Q ss_pred CcceeEEEEecchhcCCCCHHHHHHHHHHcCC---ChhhHHHHhhhcccceEEEEEecccccCCCCCccccCCCCccccc
Q psy15450 81 YKNLSVAWIDLLKAYDNCPHEWMVKVIQMYKI---DLKSATFCVFCVFHGRRLVIVMSDFNNSDGEDITMSGDCPRDKRG 157 (659)
Q Consensus 81 ~~~~~~v~lD~~KAFDsV~h~~L~~kL~~~Gi---~~~li~~I~s~yl~~r~~~v~~~~~~~~~g~~~~~~s~~~~i~~G 157 (659)
...-++|=+|+++-||+|+|+.|+.+|...+. ...+++||+. .+..-. +. .+|. ....+.|
T Consensus 242 ~G~~yVVDaDIkkFFDnINHdkLLk~L~~~i~~IlDk~Il~LIkk-~Lka~L-V~-------igGk-------~y~qekG 305 (596)
T 3kyl_A 242 QGQIYGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVD-HISNQF-VA-------FRRK-------IYKWNHG 305 (596)
T ss_dssp CSCCEEEEEEESSTTTTCCHHHHHHHHTTSCTTTSCHHHHHHHHH-HHHCEE-EE-------SSSS-------EEEECSS
T ss_pred CCCeEEEeeEHHhhCCCCCHHHHHHHHHhhccccccHHHHHHHHH-HHhhCe-EE-------ECCE-------EEecCCc
Confidence 44467899999999999999999999999875 5778888887 444322 11 1111 1223689
Q ss_pred cCCCCCCCCCCcccCCCCccccccchhhhhhhhhhhcccC
Q psy15450 158 IPPDPGKGSGNATQDDGDQYESAPEYAKQNCFLNEVKDKW 197 (659)
Q Consensus 158 VpQ~~~~~~~~~~~~~G~~L~~~P~l~~~~~~ln~I~d~l 197 (659)
+|| |+++ ||+|. +.+|+.+.+.+
T Consensus 306 TPQ-------------GGVI--SPLLA--NIYLheLDkel 328 (596)
T 3kyl_A 306 LLQ-------------GDPL--SGCLC--ELYMAFMDRLY 328 (596)
T ss_dssp SCB-------------TCTT--HHHHH--HHHHHHHHHHH
T ss_pred ccC-------------Ccch--hHHHH--HHHHHHHHHHH
Confidence 999 9999 99993 33366665544
No 18
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=48.09 E-value=5.8 Score=43.02 Aligned_cols=41 Identities=12% Similarity=-0.065 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHHHHHHHHchhc-CCCeEEEEcChHHHHHHHhc
Q psy15450 289 FATIFTAEAFAILQALKYVSSI-KENEVIIITDSKSCLEKLKN 330 (659)
Q Consensus 289 ~~T~~~AEL~AI~~AL~~a~~~-~~~~i~I~TDSq~ai~~I~~ 330 (659)
..+....|++||..|++..... ...+++|+||+. ++..+.+
T Consensus 386 ~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~-~~~~l~~ 427 (455)
T 1rw3_A 386 GWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA-VEALVKQ 427 (455)
T ss_dssp SSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-TTTTSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-HHHHhCC
Confidence 4567899999999999987543 347899999997 6555554
Done!