RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15450
(659 letters)
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO
enzyme, structural genomics, protein structure
initiative; NMR {Desulfitobacterium hafniense dcb-2}
PDB: 2kw4_A
Length = 147
Score = 66.6 bits (163), Expect = 3e-13
Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 7/96 (7%)
Query: 293 FTAEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHL 352
E A L A+K S ++ I+ D K+ + +
Sbjct: 51 VAGEIAAALYAVKKASQ-LGVKIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG- 108
Query: 353 QEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTD 388
F V+ H+G N+ VD AK D
Sbjct: 109 -----IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 63.7 bits (155), Expect = 5e-12
Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQE 354
AE A+ QALK + ++ + TDS+ S+ G +I L L
Sbjct: 66 AELIALTQALKM---AEGKKLNVYTDSRYAFATAHVHSE--GREIKNKNEILALLKALFL 120
Query: 355 WNISVRFIWVRGH-----AGIAGNEAVDRLAKETARGTDALN 391
+ I GH A GN D+ A+E A
Sbjct: 121 -PKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVLET 161
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo
sapiens} PDB: 2qk9_A 2qkk_A*
Length = 154
Score = 62.2 bits (152), Expect = 1e-11
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDS---KSCLE------KLKNTSKSNGNPSHLIL-- 343
AE A +A++ + N++++ T+S + + K S G ++
Sbjct: 53 AEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKE---VINK 109
Query: 344 DIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
+ F AL L + + ++++ V GH+G GNE DRLA+E A+
Sbjct: 110 EDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAK 150
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase,
hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} PDB:
3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Length = 150
Score = 53.3 bits (129), Expect = 1e-08
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDSK-------SCLE--KLKNTSKSNGNP---SHLI 342
E AI AL+ EV I+TDS+ + K + ++ P L+
Sbjct: 52 TELQAIYLALQDSGL----EVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLV 107
Query: 343 LDIFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETAR 385
I + L ++ V WV H GI GNE VD+L R
Sbjct: 108 NQIIEQLIKKEK----VYLAWVPAHKGIGGNEQVDKLVSAGIR 146
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability,
hydrogen exchange, cooperativity, hydrolase; 1.30A
{Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A
1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A
1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A
3aa5_X 1rbv_A ...
Length = 155
Score = 49.8 bits (120), Expect = 2e-07
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 23/104 (22%)
Query: 299 AILQALKYVSSIKEN-EVIIITDS---KSCLEKLKNTSKSNG----------NPSHLILD 344
A + AL+ ++KE+ EVI+ TDS + + + + K G N D
Sbjct: 51 AAIVALE---ALKEHAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNV-----D 102
Query: 345 IFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTD 388
+++ L + +++ WV+GHAG NE D LA+ A
Sbjct: 103 LWQRLDAALGQH-QIKWEWVKGHAGHPENERADELARAAAMNPT 145
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A
{Shewanella oneidensis} PDB: 2zqb_A
Length = 158
Score = 47.9 bits (115), Expect = 1e-06
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 23/106 (21%)
Query: 299 AILQALKYVSSIKEN-EVIIITDSK---SCLEKLKNTSKSNG----------NPSHLILD 344
A + AL+ ++KE ++I+ +DS+ + + K G N D
Sbjct: 53 APIVALE---ALKEPCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNV-----D 104
Query: 345 IFKALSHLQEWNISVRFIWVRGHAGIAGNEAVDRLAKETARGTDAL 390
++K L + + + + WV+GHAG A NE D+LA+ A
Sbjct: 105 LWKRLDKAAQLH-QIDWRWVKGHAGHAENERCDQLARAAAEANPTQ 149
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus
thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Length = 166
Score = 46.4 bits (111), Expect = 4e-06
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 359 VRFIWVRGHAGIAGNEAVDRLAKETARGTDALNPYP 394
VRF +V+GH G NE VDR A+ A+ P
Sbjct: 121 VRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPP 156
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 5e-06
Identities = 68/404 (16%), Positives = 122/404 (30%), Gaps = 110/404 (27%)
Query: 160 PDPGKGSGNATQDDGDQYESAPE-YAKQNCFLNEVKDKW-PNAYLIFTDGSKTS-ESVAS 216
P+P + DD + + E K FL V P+ F +
Sbjct: 42 PEP---TEGFAADD--EPTTPAELVGK---FLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 217 AFYDTQNKNSGTFKLQNFATIFTAEAFAILQALKYASSIKEKEAGYCKVSIRESLWIFDT 276
+ + + ++ KL + +++ A + ++ S +L+
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS---ALF---- 146
Query: 277 QNKNSGTFKLKNFATIF-----TAEAFAILQAL--KYVSSIKENEVIIITDSKSCLEKLK 329
+ G +L A IF T + F L+ L Y + + +I S L +L
Sbjct: 147 RAVGEGNAQL--VA-IFGGQGNTDDYFEELRDLYQTYHVLVGD----LIKFSAETLSEL- 198
Query: 330 NTSKSNGNPSHLI---LDIFKALSH---------LQEWNISVRFIWVR--GH-------A 368
++ + + L+I + L + L IS I V H
Sbjct: 199 --IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256
Query: 369 GIAGNEAVDRLAKETARGTDALNPYPIPVQDVRAVTDMQHEIQWRENVMSQNNNKGLFYK 428
G E L T + A TD W F+
Sbjct: 257 GFTPGELRSYLKGATGHSQG------LVTAVAIAETD-----SWES-----------FFV 294
Query: 429 NLFTITDKKPWFAKAIPLRKFIVTFNRLRSNHAICQAYLHKINIAPTNLCQECLERED-- 486
++ KAI + FI +R + +AY + ++ P+ L ++ LE +
Sbjct: 295 SV----------RKAITVLFFIG----VRC-Y---EAYPN-TSLPPSIL-EDSLENNEGV 334
Query: 487 ---MAHIILCCPKYQVTLAIALV-GSGQDAR-----LVNGGRGF 521
M I + QV + + LVNG +
Sbjct: 335 PSPMLSIS-NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Score = 40.8 bits (95), Expect = 0.002
Identities = 48/292 (16%), Positives = 79/292 (27%), Gaps = 111/292 (38%)
Query: 165 GSGNATQDDG---DQYESAPEYAKQ-----NCFLNE---------VKDKWPNAYLIFT-- 205
GS Q+ G D Y+++ A+ + + V + N + F
Sbjct: 1625 GS----QEQGMGMDLYKTSKA-AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 206 ------------------DGSKTSESVASAFYD-TQNKNSGTFKLQN---FATIFT---- 239
DG +E + F + ++ S TF+ + AT FT
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKI---FKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 240 -AEAFAILQALKYASSIKEKE--AG-----Y----CK------------VSIRESLWIFD 275
A + LK I AG Y V R
Sbjct: 1737 TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 276 TQNKNSGTFKLKNFA-------TIFTAEAF-----AILQALKYVSSI----KENEVIIIT 319
G A F+ EA + + ++ I EN+ +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 320 DSKSCLEKLKNTSKSNGNPSHLILDIFKA----LSHLQEWNISVRFIWVRGH 367
L+ + N +L+ K + LQ+ S+ V GH
Sbjct: 1857 GDLRALDTVTN-----------VLNFIKLQKIDIIELQK---SLSLEEVEGH 1894
Score = 40.0 bits (93), Expect = 0.003
Identities = 42/201 (20%), Positives = 75/201 (37%), Gaps = 47/201 (23%)
Query: 239 TAEAF--AILQALKYASSI--KEKEAGYCKVSIRESLWIFDTQNKNSGTFKLKNFAT-IF 293
+ E+F ++ +A+ I + EA Y S+ S+ + D+ N G + +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEA-YPNTSLPPSI-LEDSLENNEGV------PSPML 339
Query: 294 TAEAFAILQALKYV----SSIKENEVIIITDSKSCLEKLKNTSKSN---GNPSHLI-LDI 345
+ Q YV S + + + I+ L N +K+ G P L L++
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEIS--------LVNGAKNLVVSGPPQSLYGLNL 391
Query: 346 ----FKALSHLQEWNI---------SVRF--IWVRGHAGIAGNEAVDRLAKETARGTDAL 390
KA S L + I S RF + H+ + A D + K+ + +
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL-VPASDLINKDLVKNNVSF 450
Query: 391 NPYP--IPVQDVRAVTDMQHE 409
N IPV D +D++
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVL 471
Score = 37.3 bits (86), Expect = 0.020
Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 54/179 (30%)
Query: 7 VIRKNVDNENGT-----NV----QEKVDIAQREVNRSGE-------SL-NTAGKNDNNIL 49
++ +++N G ++ QE+V + N SL N A N ++
Sbjct: 323 ILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA---KNLVV 379
Query: 50 ---PMEQRG---CLEGATGCKDLLMLD--KIITEDCKKKYKN--LSVAWIDLLKAYDNCP 99
P G L A L D +I + K K+ N L VA P
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGL---DQSRIPFSERKLKFSNRFLPVA----------SP 426
Query: 100 -H-EWMVKVIQMYKIDLKSATFCVFCVFHGRRLVI-VMSDFNNSDGEDI-TMSGDCPRD 154
H +V + DL F+ + + I V ++ DG D+ +SG
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVS----FNAKDIQIPV---YDTFDGSDLRVLSGSISER 478
Score = 31.6 bits (71), Expect = 1.1
Identities = 28/149 (18%), Positives = 46/149 (30%), Gaps = 54/149 (36%)
Query: 540 DFYQ----------RADCALATNYGFHACSQLVYQ-PMVK------------KEYYIQNC 576
D Y+ RAD YGF + +V P+ +E Y
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGF-SILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 577 RVCYSDGCNSIKQQY-ILNKDLPLYGNF-----------FT--AIWFLYLGVACCLAAGA 622
DG ++ + +N+ Y F FT A+ L + A A
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSY-TFRSEKGLLSATQFTQPAL-TL-MEKA------A 1743
Query: 623 CVVIRTYFLYRKATKSDNCCS-HS--SYS 648
+++ L +D + HS Y+
Sbjct: 1744 FEDLKSKGL----IPADATFAGHSLGEYA 1768
Score = 31.2 bits (70), Expect = 1.6
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 22/66 (33%)
Query: 74 TEDCKKKY-KNLSV-AWID----------LLKAYDNCPHEWMVKVIQMYKIDLKSATFCV 121
T D +K + + L++ W++ LL +CP ++ VIQ+ A + V
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP---LIGVIQL-------AHYVV 251
Query: 122 FCVFHG 127
G
Sbjct: 252 TAKLLG 257
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease,
hydrolase, magnesium, metal-binding; 1.60A
{Chlorobaculum tepidum}
Length = 146
Score = 45.6 bits (109), Expect = 6e-06
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 359 VRFIWVRGHAGIAGNEAVDRLAKETAR 385
V F V+GH+ N D LA+ +
Sbjct: 117 VTFHKVKGHSDNPYNSRADELARLAIK 143
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug
design, transferase; 2.35A {Human immunodeficiency virus
2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Length = 555
Score = 39.3 bits (92), Expect = 0.004
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQE 354
AE A AL +V II DS+ + + + + + ++ I + + +
Sbjct: 476 AELEAFAMALTDSGP----KVNIIVDSQYVMGIVASQPTESESK--IVNQIIEEMIKKEA 529
Query: 355 WNISVRFIWVRGHAGIAGNEAVDRL 379
++ WV H GI GN+ VD L
Sbjct: 530 IYVA----WVPAHKGIGGNQEVDHL 550
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 38.6 bits (90), Expect = 0.006
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 295 AEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALSHLQE 354
E AI AL+ EV I+TDS+ L ++ + + L+ I + L ++
Sbjct: 479 TELQAIYLALQDSGL----EVNIVTDSQYALGIIQAQPDKSESE--LVNQIIEQLIKKEK 532
Query: 355 WNISVRFIWVRGHAGIAGNEAVDRL 379
++ WV H GI GNE VD+L
Sbjct: 533 VYLA----WVPAHKGIGGNEQVDKL 553
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 35.6 bits (83), Expect = 0.014
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 295 AEAFAILQALKYV----SSIKENEVIIITDSKSCLEKLKNTSKSNGNPSHLILDIFKALS 350
AE A+++AL+ + + + EV + DS+ + +++ K P + + +
Sbjct: 48 AEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVK-EP-----TLKEKFA 101
Query: 351 HLQEWNISVRFIWVRGHAGIAGNEAVDRLAKE 382
+ + V H N D L E
Sbjct: 102 KIAHIKMERVPNLVFVHIPREKNARADELVNE 133
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain,
fusion protein, maltose binding protein, HYDR; HET: MLR
TAR; 2.25A {Mycobacterium tuberculosis}
Length = 141
Score = 33.4 bits (77), Expect = 0.077
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 294 TAEAFAILQALKYVSSIKENEVIIITDSKSCLEKLKNTSK-SNGNPSHLILDIFKALSHL 352
AE ++ L + E ++ DSK +E++ K + + L + S
Sbjct: 48 VAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQF 107
Query: 353 QEWNISVRFIWVRGHAGIAGNEAVDRLAKE 382
+ + WV N DRLA +
Sbjct: 108 RRI----NYEWVPRA----RNTYADRLAND 129
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 31.1 bits (71), Expect = 0.95
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 16/53 (30%)
Query: 363 WVRGHAGIAGNEAVDRLAKETARGTDAL-----------NPYPIPVQDVRAVT 404
+ G+ + R E AR +PYP + D V
Sbjct: 96 FALGNL-----DTDHRQCLELARRARCAVVSVDYRLAPEHPYPAALHDAIEVL 143
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 30.7 bits (70), Expect = 1.3
Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 16/53 (30%)
Query: 363 WVRGHAGIAGNEAVDRLAKETARGTDAL-----------NPYPIPVQDVRAVT 404
+ G A E+ D E AR +P PV D A
Sbjct: 90 FAIGTA-----ESSDPFCVEVARELGFAVANVEYRLAPETTFPGPVNDCYAAL 137
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 29.6 bits (67), Expect = 3.1
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 16/54 (29%)
Query: 363 WVRGHAGIAGNEAVDRLAKETARGTDAL-----------NPYPIPVQDVRAVTD 405
+V G E D + + A + A+ + +P V+D
Sbjct: 87 FVLG-----SVETHDHVCRRLANLSGAVVVSVDYRLAPEHKFPAAVEDAYDAAK 135
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 29.5 bits (67), Expect = 3.3
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 16/54 (29%)
Query: 363 WVRGHAGIAGNEAVDRLAKETARGTDAL-----------NPYPIPVQDVRAVTD 405
+V G E D + + +R +D++ +P V+D A
Sbjct: 84 FVFG-----SIETHDHICRRLSRLSDSVVVSVDYRLAPEYKFPTAVEDAYAALK 132
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 29.1 bits (66), Expect = 4.1
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 16/54 (29%)
Query: 363 WVRGHAGIAGNEAVDRLAKETARGTDAL-----------NPYPIPVQDVRAVTD 405
+V E+ D L + AR +++ + +P V D T
Sbjct: 90 FVIC-----SIESHDALCRRIARLSNSTVVSVDYRLAPEHKFPAAVYDCYDATK 138
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical
BUN endocytosis-exocytosis complex; 2.40A {Loligo
pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Length = 591
Score = 28.8 bits (63), Expect = 8.0
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 558 CSQLVYQPMVKKEYYIQNCRVCY--SDGCNSIKQQYILNKDLPLYGNF 603
+L +Q M I+N Y + G +++ +L++ L+
Sbjct: 241 LHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLDEKDDLWVEM 288
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.416
Gapped
Lambda K H
0.267 0.0810 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,973,061
Number of extensions: 598324
Number of successful extensions: 1049
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 27
Length of query: 659
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 559
Effective length of database: 3,909,693
Effective search space: 2185518387
Effective search space used: 2185518387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)