Query psy15453
Match_columns 247
No_of_seqs 156 out of 1595
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:28:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15000 peroxidase; Provision 100.0 1.4E-38 3E-43 261.8 19.5 187 54-247 3-193 (200)
2 PRK10382 alkyl hydroperoxide r 100.0 2.2E-38 4.8E-43 257.4 20.0 184 53-245 2-186 (187)
3 PTZ00137 2-Cys peroxiredoxin; 100.0 2.4E-38 5.2E-43 268.0 20.4 192 49-247 64-256 (261)
4 COG0450 AhpC Peroxiredoxin [Po 100.0 1.4E-37 3.1E-42 247.3 18.6 186 52-246 2-190 (194)
5 PTZ00253 tryparedoxin peroxida 100.0 1.7E-37 3.7E-42 255.6 19.3 190 52-247 5-195 (199)
6 PRK13190 putative peroxiredoxi 100.0 8.4E-37 1.8E-41 251.8 19.8 182 53-245 2-183 (202)
7 TIGR03137 AhpC peroxiredoxin. 100.0 2.7E-36 5.8E-41 246.1 19.3 181 54-243 3-184 (187)
8 PRK13191 putative peroxiredoxi 100.0 1.1E-35 2.4E-40 246.9 20.3 183 52-245 6-194 (215)
9 cd03015 PRX_Typ2cys Peroxiredo 100.0 3.8E-35 8.2E-40 236.6 20.1 172 55-232 1-173 (173)
10 PRK13189 peroxiredoxin; Provis 100.0 3.7E-35 8E-40 245.0 20.2 183 51-244 7-195 (222)
11 cd03016 PRX_1cys Peroxiredoxin 100.0 1E-34 2.2E-39 239.7 19.5 176 55-241 1-179 (203)
12 PRK13599 putative peroxiredoxi 100.0 2.1E-34 4.6E-39 239.1 20.1 178 54-241 3-185 (215)
13 KOG0852|consensus 100.0 4.3E-34 9.2E-39 221.7 16.7 189 53-247 4-192 (196)
14 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.1E-30 2.4E-35 203.7 17.4 149 51-216 2-156 (157)
15 cd03018 PRX_AhpE_like Peroxire 100.0 5.9E-28 1.3E-32 189.4 16.3 145 53-213 1-148 (149)
16 PRK00522 tpx lipid hydroperoxi 100.0 3.9E-27 8.4E-32 188.8 17.6 148 48-214 13-167 (167)
17 PRK09437 bcp thioredoxin-depen 100.0 4E-27 8.6E-32 186.1 16.7 146 51-213 2-153 (154)
18 cd03014 PRX_Atyp2cys Peroxired 100.0 4.8E-27 1E-31 183.3 16.6 140 54-210 1-142 (143)
19 PF08534 Redoxin: Redoxin; In 100.0 3.8E-27 8.3E-32 184.4 15.1 133 54-201 1-137 (146)
20 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 5.1E-27 1.1E-31 178.2 14.3 124 55-194 1-124 (124)
21 cd03017 PRX_BCP Peroxiredoxin 99.9 1.3E-26 2.9E-31 179.8 14.8 136 57-209 1-139 (140)
22 KOG0854|consensus 99.9 7.5E-26 1.6E-30 175.9 14.7 178 51-238 4-190 (224)
23 cd02971 PRX_family Peroxiredox 99.9 4.7E-25 1E-29 170.9 15.7 134 58-206 1-137 (140)
24 PRK15412 thiol:disulfide inter 99.9 4.1E-25 8.9E-30 179.9 14.2 124 52-200 38-164 (185)
25 cd03013 PRX5_like Peroxiredoxi 99.9 1E-24 2.2E-29 172.7 15.3 135 55-201 1-143 (155)
26 cd02969 PRX_like1 Peroxiredoxi 99.9 3E-24 6.5E-29 172.6 16.8 151 56-229 1-171 (171)
27 PRK03147 thiol-disulfide oxido 99.9 7.7E-24 1.7E-28 170.0 16.9 137 52-215 34-171 (173)
28 PTZ00056 glutathione peroxidas 99.9 7.4E-24 1.6E-28 174.2 15.1 145 52-217 12-179 (199)
29 TIGR02661 MauD methylamine deh 99.9 8.3E-24 1.8E-28 172.8 15.0 134 52-214 45-180 (189)
30 cd02970 PRX_like2 Peroxiredoxi 99.9 5.8E-24 1.3E-28 166.3 13.1 124 58-197 1-148 (149)
31 cd00340 GSH_Peroxidase Glutath 99.9 3.7E-24 8E-29 168.9 11.7 125 59-200 2-144 (152)
32 PLN02399 phospholipid hydroper 99.9 8.1E-24 1.8E-28 177.2 13.7 144 52-215 72-233 (236)
33 PLN02412 probable glutathione 99.9 9.1E-24 2E-28 169.3 13.1 138 57-215 7-163 (167)
34 cd03012 TlpA_like_DipZ_like Tl 99.9 9.1E-24 2E-28 161.5 11.2 107 72-198 13-125 (126)
35 TIGR02540 gpx7 putative glutat 99.9 3.3E-23 7.1E-28 163.7 13.5 135 60-215 3-152 (153)
36 PTZ00256 glutathione peroxidas 99.9 3.7E-23 8E-28 168.1 13.0 129 56-200 17-169 (183)
37 TIGR00385 dsbE periplasmic pro 99.9 2.7E-22 5.7E-27 161.7 14.2 132 52-214 33-169 (173)
38 cd03010 TlpA_like_DsbE TlpA-li 99.9 3.2E-22 7E-27 152.9 12.1 118 57-200 1-122 (127)
39 TIGR01626 ytfJ_HI0045 conserve 99.9 9.5E-22 2.1E-26 158.5 14.2 144 52-216 22-183 (184)
40 PRK14018 trifunctional thiored 99.9 2.8E-21 6E-26 177.6 18.2 133 53-213 32-170 (521)
41 cd03008 TryX_like_RdCVF Trypar 99.9 1.7E-22 3.6E-27 157.5 8.1 102 73-194 16-128 (146)
42 cd02968 SCO SCO (an acronym fo 99.9 1.5E-21 3.3E-26 151.7 13.2 121 58-195 1-140 (142)
43 cd02967 mauD Methylamine utili 99.9 1.9E-21 4.2E-26 145.6 13.3 110 60-195 1-112 (114)
44 KOG0855|consensus 99.9 1.6E-20 3.5E-25 145.0 13.6 149 50-214 60-210 (211)
45 cd02966 TlpA_like_family TlpA- 99.8 5.3E-20 1.1E-24 136.2 12.6 113 61-196 1-115 (116)
46 PRK13728 conjugal transfer pro 99.8 6.5E-20 1.4E-24 147.1 13.8 121 53-216 49-171 (181)
47 PLN02919 haloacid dehalogenase 99.8 7.4E-20 1.6E-24 182.2 13.2 142 52-215 390-535 (1057)
48 PRK10606 btuE putative glutath 99.8 3.1E-19 6.8E-24 144.5 13.2 141 57-216 3-181 (183)
49 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 2.9E-19 6.4E-24 135.5 12.3 112 60-200 1-114 (123)
50 cd02964 TryX_like_family Trypa 99.8 1.9E-19 4.1E-24 138.6 11.2 106 68-195 4-116 (132)
51 cd03009 TryX_like_TryX_NRX Try 99.8 9.2E-20 2E-24 140.0 8.8 110 68-195 4-116 (131)
52 COG2077 Tpx Peroxiredoxin [Pos 99.8 9.5E-18 2.1E-22 128.0 12.5 140 36-196 5-148 (158)
53 PF13905 Thioredoxin_8: Thiore 99.7 8.5E-18 1.9E-22 121.8 7.5 91 82-191 1-95 (95)
54 PF02630 SCO1-SenC: SCO1/SenC; 99.7 6.1E-17 1.3E-21 130.5 11.2 132 55-196 28-172 (174)
55 TIGR02738 TrbB type-F conjugat 99.7 1.8E-16 3.8E-21 124.9 13.1 94 71-200 43-141 (153)
56 COG1999 Uncharacterized protei 99.7 5.7E-15 1.2E-19 122.0 16.7 140 61-216 49-204 (207)
57 cd02950 TxlA TRX-like protein 99.5 3.2E-13 7E-18 105.3 10.9 92 81-216 19-110 (142)
58 COG0386 BtuE Glutathione perox 99.5 8.4E-13 1.8E-17 101.4 11.4 136 59-215 5-159 (162)
59 TIGR02740 TraF-like TraF-like 99.5 2.5E-13 5.5E-18 116.6 9.5 108 72-216 156-264 (271)
60 cd02985 TRX_CDSP32 TRX family, 99.4 1.1E-12 2.5E-17 96.5 9.7 80 79-199 12-91 (103)
61 KOG2501|consensus 99.4 2.2E-12 4.8E-17 100.3 7.4 111 68-195 18-132 (157)
62 cd02999 PDI_a_ERp44_like PDIa 99.4 5.7E-12 1.2E-16 92.4 9.3 85 78-210 14-98 (100)
63 cd02963 TRX_DnaJ TRX domain, D 99.3 2.3E-11 4.9E-16 90.8 11.0 89 80-214 22-110 (111)
64 cd02948 TRX_NDPK TRX domain, T 99.3 2E-11 4.2E-16 89.7 9.9 87 81-215 16-102 (102)
65 KOG2792|consensus 99.3 8.7E-12 1.9E-16 103.4 8.2 137 52-212 115-271 (280)
66 cd02951 SoxW SoxW family; SoxW 99.3 2.7E-11 5.9E-16 92.1 10.1 103 81-216 12-119 (125)
67 COG0678 AHP1 Peroxiredoxin [Po 99.3 1E-10 2.3E-15 89.4 12.1 139 52-202 2-152 (165)
68 cd02956 ybbN ybbN protein fami 99.3 7.4E-11 1.6E-15 85.3 10.1 85 81-212 11-95 (96)
69 cd02954 DIM1 Dim1 family; Dim1 99.2 1.8E-10 3.9E-15 85.9 11.1 92 81-215 13-110 (114)
70 KOG1651|consensus 99.2 1.2E-10 2.6E-15 90.7 10.1 123 57-195 12-152 (171)
71 cd02953 DsbDgamma DsbD gamma f 99.2 1.1E-10 2.3E-15 85.9 9.0 90 81-212 10-103 (104)
72 KOG0541|consensus 99.2 1.8E-10 3.8E-15 88.7 9.6 141 50-202 6-158 (171)
73 PRK09381 trxA thioredoxin; Pro 99.2 5.2E-10 1.1E-14 82.9 10.8 86 82-214 21-106 (109)
74 PHA02278 thioredoxin-like prot 99.1 5.5E-10 1.2E-14 82.2 10.0 80 81-199 13-92 (103)
75 PF13098 Thioredoxin_2: Thiore 99.1 2.4E-10 5.1E-15 85.0 7.4 98 81-200 4-104 (112)
76 cd02993 PDI_a_APS_reductase PD 99.1 6.2E-10 1.3E-14 82.7 9.3 88 81-211 20-108 (109)
77 cd03002 PDI_a_MPD1_like PDI fa 99.1 5.2E-10 1.1E-14 82.6 8.6 88 81-212 17-108 (109)
78 cd02994 PDI_a_TMX PDIa family, 99.1 1.2E-09 2.7E-14 79.7 10.5 85 81-213 16-100 (101)
79 KOG0910|consensus 99.1 8.3E-10 1.8E-14 85.2 9.6 76 82-200 61-136 (150)
80 PRK10996 thioredoxin 2; Provis 99.1 1.7E-09 3.7E-14 84.0 11.0 88 81-215 51-138 (139)
81 cd03000 PDI_a_TMX3 PDIa family 99.1 1.2E-09 2.6E-14 80.3 9.5 88 81-215 14-103 (104)
82 PLN00410 U5 snRNP protein, DIM 99.1 2.1E-09 4.5E-14 83.3 10.8 107 81-229 22-136 (142)
83 cd03003 PDI_a_ERdj5_N PDIa fam 99.0 5.3E-10 1.1E-14 81.7 6.7 74 81-197 17-90 (101)
84 cd03004 PDI_a_ERdj5_C PDIa fam 99.0 2.1E-09 4.5E-14 78.9 9.5 77 81-199 18-94 (104)
85 cd02959 ERp19 Endoplasmic reti 99.0 1.1E-09 2.3E-14 82.6 7.8 81 78-197 15-95 (117)
86 cd02949 TRX_NTR TRX domain, no 99.0 3.8E-09 8.3E-14 76.6 10.4 77 81-200 12-88 (97)
87 cd03005 PDI_a_ERp46 PDIa famil 99.0 2.6E-09 5.7E-14 77.7 9.3 75 84-200 18-94 (102)
88 cd02962 TMX2 TMX2 family; comp 99.0 2.8E-09 6E-14 83.9 9.9 81 81-197 46-126 (152)
89 KOG0907|consensus 99.0 3.7E-09 8E-14 78.1 9.9 75 81-199 20-94 (106)
90 cd02984 TRX_PICOT TRX domain, 99.0 5.9E-09 1.3E-13 75.3 9.6 83 82-212 14-96 (97)
91 cd02997 PDI_a_PDIR PDIa family 99.0 6.5E-09 1.4E-13 75.8 9.8 79 81-199 16-95 (104)
92 TIGR01126 pdi_dom protein disu 99.0 6.1E-09 1.3E-13 75.6 9.5 88 81-214 12-100 (102)
93 cd02986 DLP Dim1 family, Dim1- 98.9 1.8E-08 3.9E-13 74.8 11.1 92 81-215 13-110 (114)
94 PTZ00051 thioredoxin; Provisio 98.9 6E-09 1.3E-13 75.4 8.4 74 81-198 17-90 (98)
95 cd03006 PDI_a_EFP1_N PDIa fami 98.9 8.6E-09 1.9E-13 77.1 8.9 75 81-198 28-103 (113)
96 cd02996 PDI_a_ERp44 PDIa famil 98.9 1.2E-08 2.6E-13 75.5 9.4 84 82-211 18-107 (108)
97 TIGR01068 thioredoxin thioredo 98.9 2.1E-08 4.6E-13 72.4 10.3 86 82-214 14-99 (101)
98 PF00085 Thioredoxin: Thioredo 98.9 2.7E-08 5.8E-13 72.2 10.7 86 82-214 17-102 (103)
99 cd02998 PDI_a_ERp38 PDIa famil 98.9 1.3E-08 2.8E-13 74.2 8.1 76 82-197 18-94 (105)
100 cd02952 TRP14_like Human TRX-r 98.8 9.7E-09 2.1E-13 77.4 7.1 78 81-192 20-104 (119)
101 cd02989 Phd_like_TxnDC9 Phosdu 98.8 1E-07 2.2E-12 71.3 12.1 75 82-200 22-96 (113)
102 PTZ00443 Thioredoxin domain-co 98.8 3.4E-08 7.4E-13 82.5 10.0 88 82-216 52-139 (224)
103 TIGR01295 PedC_BrcD bacterioci 98.8 3E-08 6.5E-13 75.2 8.8 83 82-199 23-110 (122)
104 cd02957 Phd_like Phosducin (Ph 98.8 2E-08 4.4E-13 75.0 7.7 73 82-199 24-96 (113)
105 cd02961 PDI_a_family Protein D 98.8 2.6E-08 5.7E-13 71.5 8.0 85 81-210 14-99 (101)
106 cd03065 PDI_b_Calsequestrin_N 98.8 5.5E-08 1.2E-12 73.5 9.8 86 83-215 28-118 (120)
107 PF00255 GSHPx: Glutathione pe 98.8 2.6E-08 5.6E-13 73.6 7.6 61 61-126 3-63 (108)
108 PF00837 T4_deiodinase: Iodoth 98.8 1.4E-07 2.9E-12 78.5 12.2 144 51-215 71-236 (237)
109 cd03001 PDI_a_P5 PDIa family, 98.8 8.3E-08 1.8E-12 69.8 9.8 84 82-211 18-101 (103)
110 cd02955 SSP411 TRX domain, SSP 98.8 1.9E-07 4.1E-12 71.0 12.0 100 81-214 14-120 (124)
111 cd02975 PfPDO_like_N Pyrococcu 98.8 6.4E-08 1.4E-12 72.4 9.0 64 82-188 22-85 (113)
112 cd02965 HyaE HyaE family; HyaE 98.8 6E-08 1.3E-12 72.0 8.6 77 81-200 26-104 (111)
113 COG3118 Thioredoxin domain-con 98.8 4.3E-08 9.2E-13 83.6 8.9 89 81-216 42-130 (304)
114 PRK00293 dipZ thiol:disulfide 98.8 3.7E-08 8.1E-13 93.1 9.4 96 78-216 470-570 (571)
115 cd02992 PDI_a_QSOX PDIa family 98.7 1.1E-07 2.3E-12 71.3 9.4 69 82-189 19-89 (114)
116 TIGR00424 APS_reduc 5'-adenyly 98.7 1.1E-07 2.4E-12 87.1 10.9 93 81-215 370-462 (463)
117 PF13728 TraF: F plasmid trans 98.7 1.3E-07 2.9E-12 78.6 10.1 98 76-210 114-212 (215)
118 cd02995 PDI_a_PDI_a'_C PDIa fa 98.7 1.5E-07 3.4E-12 68.4 8.5 43 82-125 18-61 (104)
119 PTZ00102 disulphide isomerase; 98.6 1.9E-07 4.2E-12 86.3 10.7 90 81-217 48-139 (477)
120 cd02987 Phd_like_Phd Phosducin 98.6 3.6E-07 7.9E-12 73.6 10.4 73 82-199 83-155 (175)
121 cd02947 TRX_family TRX family; 98.6 8.9E-07 1.9E-11 62.1 10.3 74 82-199 10-83 (93)
122 TIGR02739 TraF type-F conjugat 98.6 2.5E-07 5.3E-12 78.6 8.5 102 77-215 145-247 (256)
123 PTZ00102 disulphide isomerase; 98.6 2.9E-07 6.4E-12 85.1 9.8 91 81-216 374-465 (477)
124 TIGR00411 redox_disulf_1 small 98.6 1.3E-06 2.7E-11 60.9 10.5 79 85-214 2-80 (82)
125 PLN02309 5'-adenylylsulfate re 98.5 7.1E-07 1.5E-11 81.8 11.1 92 81-215 364-456 (457)
126 PRK13703 conjugal pilus assemb 98.5 5.2E-07 1.1E-11 76.2 8.1 102 77-215 138-240 (248)
127 cd02988 Phd_like_VIAF Phosduci 98.4 2.2E-06 4.7E-11 70.1 10.3 72 82-200 102-173 (192)
128 TIGR01130 ER_PDI_fam protein d 98.4 3E-06 6.6E-11 77.7 10.9 90 81-216 17-109 (462)
129 TIGR00412 redox_disulf_2 small 98.3 2.4E-06 5.1E-11 59.2 7.2 34 86-121 2-35 (76)
130 cd02958 UAS UAS family; UAS is 98.3 8.8E-06 1.9E-10 60.7 10.8 91 81-215 16-110 (114)
131 TIGR02187 GlrX_arch Glutaredox 98.3 6E-06 1.3E-10 68.7 10.7 77 80-198 17-97 (215)
132 PTZ00062 glutaredoxin; Provisi 98.3 6.8E-06 1.5E-10 67.7 9.6 63 83-197 18-80 (204)
133 PF09695 YtfJ_HI0045: Bacteria 98.2 3E-05 6.5E-10 60.5 11.9 142 54-213 2-158 (160)
134 cd02960 AGR Anterior Gradient 98.2 1.5E-05 3.3E-10 60.8 9.4 92 81-214 22-121 (130)
135 PF05988 DUF899: Bacterial pro 98.2 0.00012 2.5E-09 60.0 14.7 117 61-195 48-172 (211)
136 PF04592 SelP_N: Selenoprotein 98.2 2.5E-05 5.4E-10 64.7 10.7 119 57-200 8-131 (238)
137 cd02973 TRX_GRX_like Thioredox 98.2 1.7E-05 3.6E-10 53.2 8.0 38 85-125 2-39 (67)
138 PF13911 AhpC-TSA_2: AhpC/TSA 98.1 2.4E-05 5.3E-10 58.4 8.7 79 105-196 2-112 (115)
139 cd03026 AhpF_NTD_C TRX-GRX-lik 98.1 2.4E-05 5.2E-10 55.9 7.8 70 79-194 9-78 (89)
140 KOG0908|consensus 98.1 2.9E-05 6.2E-10 64.8 9.1 71 81-195 20-90 (288)
141 TIGR01130 ER_PDI_fam protein d 98.0 2.9E-05 6.3E-10 71.2 9.7 90 81-217 363-455 (462)
142 cd02982 PDI_b'_family Protein 98.0 3.6E-05 7.8E-10 55.8 7.9 91 81-215 11-102 (103)
143 cd01659 TRX_superfamily Thiore 98.0 4.2E-05 9.1E-10 48.9 7.4 40 86-128 1-40 (69)
144 PHA02125 thioredoxin-like prot 98.0 8.9E-05 1.9E-09 51.0 9.2 72 86-212 2-73 (75)
145 PF14595 Thioredoxin_9: Thiore 97.9 1.9E-05 4.1E-10 60.5 5.4 78 78-195 37-114 (129)
146 COG0526 TrxA Thiol-disulfide i 97.9 3.9E-05 8.5E-10 55.4 6.1 48 76-125 26-73 (127)
147 smart00594 UAS UAS domain. 97.8 0.00016 3.4E-09 54.7 9.1 92 81-212 26-121 (122)
148 TIGR02187 GlrX_arch Glutaredox 97.8 0.00021 4.6E-09 59.4 10.5 79 84-213 135-213 (215)
149 PF05176 ATP-synt_10: ATP10 pr 97.8 0.0003 6.5E-09 59.9 10.6 146 56-213 98-250 (252)
150 PF10417 1-cysPrx_C: C-termina 97.7 1E-05 2.3E-10 48.7 0.6 25 214-238 1-25 (40)
151 KOG4498|consensus 97.7 0.00035 7.6E-09 55.9 9.2 132 69-213 36-195 (197)
152 KOG0190|consensus 97.6 0.00023 5E-09 65.5 7.6 93 82-218 42-134 (493)
153 PF13899 Thioredoxin_7: Thiore 97.5 0.00067 1.4E-08 47.4 7.8 46 81-128 16-64 (82)
154 COG2143 Thioredoxin-related pr 97.2 0.0096 2.1E-07 46.5 11.6 95 80-200 40-137 (182)
155 COG4312 Uncharacterized protei 97.0 0.014 3.1E-07 48.0 10.9 89 71-172 60-155 (247)
156 PF06110 DUF953: Eukaryotic pr 96.9 0.0036 7.8E-08 47.1 6.5 78 81-192 18-103 (119)
157 KOG1731|consensus 96.8 0.0017 3.7E-08 60.3 4.5 67 83-188 58-126 (606)
158 TIGR02200 GlrX_actino Glutared 96.7 0.0057 1.2E-07 41.5 6.1 33 86-126 2-34 (77)
159 COG3054 Predicted transcriptio 96.7 0.0093 2E-07 46.2 7.5 58 152-215 124-182 (184)
160 PF13778 DUF4174: Domain of un 96.6 0.0091 2E-07 44.9 6.9 109 77-216 3-112 (118)
161 KOG0190|consensus 96.6 0.0018 3.8E-08 59.8 3.4 43 72-115 373-416 (493)
162 KOG0191|consensus 96.5 0.016 3.5E-07 52.4 9.2 86 82-214 47-132 (383)
163 cd02991 UAS_ETEA UAS family, E 96.5 0.027 5.9E-07 42.1 8.8 89 81-216 16-113 (116)
164 KOG0912|consensus 96.3 0.017 3.7E-07 49.9 7.5 91 82-216 13-106 (375)
165 TIGR02180 GRX_euk Glutaredoxin 96.3 0.011 2.4E-07 40.8 5.4 37 86-126 1-37 (84)
166 PF13192 Thioredoxin_3: Thiore 96.3 0.018 3.9E-07 39.6 6.1 72 89-213 5-76 (76)
167 TIGR02196 GlrX_YruB Glutaredox 96.3 0.028 6E-07 37.3 7.0 33 86-126 2-34 (74)
168 PF03190 Thioredox_DsbH: Prote 96.2 0.086 1.9E-06 41.8 10.2 105 75-215 30-143 (163)
169 PRK11657 dsbG disulfide isomer 96.2 0.069 1.5E-06 45.5 10.5 30 81-111 116-145 (251)
170 PRK10877 protein disulfide iso 96.1 0.053 1.2E-06 45.6 9.5 115 81-216 106-231 (232)
171 cd03007 PDI_a_ERp29_N PDIa fam 96.0 0.079 1.7E-06 39.7 8.7 94 81-214 17-114 (116)
172 PRK11509 hydrogenase-1 operon 95.8 0.13 2.8E-06 39.4 9.4 88 85-217 36-125 (132)
173 COG4232 Thiol:disulfide interc 95.7 0.031 6.7E-07 52.5 6.6 93 81-214 473-566 (569)
174 cd02976 NrdH NrdH-redoxin (Nrd 95.4 0.09 1.9E-06 34.7 6.6 33 86-126 2-34 (73)
175 cd02066 GRX_family Glutaredoxi 95.0 0.11 2.3E-06 34.2 6.0 36 86-129 2-37 (72)
176 KOG0191|consensus 94.5 0.18 3.9E-06 45.6 8.1 92 82-218 162-254 (383)
177 TIGR03143 AhpF_homolog putativ 94.5 0.3 6.6E-06 46.4 10.0 78 83-212 476-554 (555)
178 cd03023 DsbA_Com1_like DsbA fa 94.3 0.075 1.6E-06 40.7 4.5 39 81-122 4-42 (154)
179 cd03020 DsbA_DsbC_DsbG DsbA fa 94.2 0.091 2E-06 42.8 4.9 26 81-107 76-101 (197)
180 PRK11200 grxA glutaredoxin 1; 94.1 0.2 4.3E-06 34.9 6.0 38 86-126 3-40 (85)
181 PF00462 Glutaredoxin: Glutare 93.6 0.23 5E-06 32.0 5.2 35 86-128 1-35 (60)
182 PF11009 DUF2847: Protein of u 93.3 0.62 1.3E-05 34.2 7.5 76 82-195 19-94 (105)
183 KOG4277|consensus 93.1 0.22 4.7E-06 43.2 5.5 87 83-214 44-130 (468)
184 TIGR02190 GlrX-dom Glutaredoxi 93.1 0.33 7.1E-06 33.4 5.5 37 82-126 6-42 (79)
185 PF13462 Thioredoxin_4: Thiore 93.0 0.3 6.5E-06 37.9 5.9 49 75-124 5-54 (162)
186 cd03419 GRX_GRXh_1_2_like Glut 92.6 0.33 7E-06 33.2 5.0 35 86-126 2-36 (82)
187 PRK15317 alkyl hydroperoxide r 92.4 1.2 2.6E-05 41.9 10.1 37 83-122 117-153 (517)
188 PHA03050 glutaredoxin; Provisi 92.3 0.38 8.2E-06 35.5 5.3 22 86-108 15-36 (108)
189 KOG3425|consensus 92.2 0.38 8.1E-06 36.0 5.0 45 81-126 24-75 (128)
190 PF02114 Phosducin: Phosducin; 91.7 0.87 1.9E-05 39.1 7.6 89 82-215 146-237 (265)
191 TIGR00365 monothiol glutaredox 91.6 0.89 1.9E-05 32.7 6.5 27 93-126 25-51 (97)
192 cd03027 GRX_DEP Glutaredoxin ( 91.5 0.76 1.7E-05 30.8 5.8 32 87-126 4-35 (73)
193 TIGR02189 GlrX-like_plant Glut 91.5 0.63 1.4E-05 33.6 5.6 33 86-126 10-42 (99)
194 cd03028 GRX_PICOT_like Glutare 91.3 0.91 2E-05 32.0 6.2 27 93-126 21-47 (90)
195 PRK10638 glutaredoxin 3; Provi 90.9 1.1 2.3E-05 31.0 6.1 33 87-127 5-37 (83)
196 TIGR02181 GRX_bact Glutaredoxi 90.7 0.7 1.5E-05 31.4 5.0 32 87-126 2-33 (79)
197 cd03418 GRX_GRXb_1_3_like Glut 90.7 1.2 2.6E-05 29.7 6.1 33 86-126 2-34 (75)
198 COG0695 GrxC Glutaredoxin and 90.5 1.2 2.7E-05 30.8 6.1 42 86-135 3-46 (80)
199 cd03019 DsbA_DsbA DsbA family, 89.2 0.76 1.6E-05 36.2 4.8 40 81-122 14-53 (178)
200 TIGR02183 GRXA Glutaredoxin, G 89.2 1.4 3E-05 30.8 5.6 37 86-125 2-38 (86)
201 TIGR03140 AhpF alkyl hydropero 89.1 3.7 8E-05 38.6 10.1 31 82-113 117-147 (515)
202 PRK10329 glutaredoxin-like pro 88.9 2.1 4.5E-05 29.6 6.3 33 86-126 3-35 (81)
203 cd02972 DsbA_family DsbA famil 88.8 1.2 2.6E-05 30.7 5.2 35 87-123 2-36 (98)
204 PRK10824 glutaredoxin-4; Provi 88.3 1.7 3.6E-05 32.5 5.8 16 93-108 28-43 (115)
205 KOG0914|consensus 88.3 0.74 1.6E-05 38.2 4.1 37 82-119 144-180 (265)
206 cd03029 GRX_hybridPRX5 Glutare 88.0 1.8 3.8E-05 28.9 5.4 33 86-126 3-35 (72)
207 TIGR02194 GlrX_NrdH Glutaredox 87.8 1.2 2.5E-05 29.9 4.3 31 88-126 3-33 (72)
208 PRK10954 periplasmic protein d 86.3 0.83 1.8E-05 37.5 3.5 40 81-122 36-78 (207)
209 cd02979 PHOX_C FAD-dependent P 83.6 20 0.00044 28.4 13.0 125 56-195 1-152 (167)
210 TIGR03765 ICE_PFL_4695 integra 82.3 8.9 0.00019 28.0 6.9 67 101-189 36-102 (105)
211 COG1331 Highly conserved prote 81.9 4.6 0.0001 39.0 6.7 81 81-195 42-125 (667)
212 COG1651 DsbG Protein-disulfide 81.4 3.4 7.4E-05 34.5 5.3 47 69-116 71-117 (244)
213 PF11072 DUF2859: Protein of u 80.9 10 0.00022 29.4 7.2 68 100-189 73-140 (142)
214 PF07976 Phe_hydrox_dim: Pheno 80.4 8.6 0.00019 30.6 7.0 119 48-171 25-165 (169)
215 KOG0911|consensus 80.3 1.3 2.7E-05 36.9 2.1 44 81-127 16-59 (227)
216 PLN03098 LPA1 LOW PSII ACCUMUL 80.2 5.6 0.00012 36.7 6.5 67 54-125 271-337 (453)
217 KOG2603|consensus 79.8 18 0.00039 31.7 9.1 115 84-232 61-182 (331)
218 PRK12759 bifunctional gluaredo 79.4 4.4 9.6E-05 37.1 5.7 41 86-134 4-44 (410)
219 PTZ00062 glutaredoxin; Provisi 77.0 7.9 0.00017 31.9 6.0 38 82-126 112-152 (204)
220 PHA03075 glutaredoxin-like pro 76.2 2 4.4E-05 31.9 2.0 39 83-122 2-40 (123)
221 PRK06184 hypothetical protein; 75.3 32 0.00069 32.1 10.3 108 52-215 385-494 (502)
222 PF06491 Disulph_isomer: Disul 74.5 29 0.00063 26.4 7.8 37 178-215 95-131 (136)
223 PF13956 Ibs_toxin: Toxin Ibs, 72.8 2.3 4.9E-05 20.7 1.0 14 1-14 1-14 (19)
224 cd02983 P5_C P5 family, C-term 72.8 39 0.00083 25.5 8.7 50 163-220 70-119 (130)
225 PRK08294 phenol 2-monooxygenas 71.3 67 0.0015 31.2 11.7 149 50-215 460-630 (634)
226 TIGR03143 AhpF_homolog putativ 70.4 36 0.00079 32.4 9.6 28 161-194 408-438 (555)
227 PRK06183 mhpA 3-(3-hydroxyphen 69.8 66 0.0014 30.3 11.1 121 52-215 410-531 (538)
228 PF06053 DUF929: Domain of unk 69.7 14 0.00029 31.5 5.7 32 81-113 57-88 (249)
229 PRK08132 FAD-dependent oxidore 68.0 63 0.0014 30.5 10.6 118 52-215 426-544 (547)
230 PRK13738 conjugal transfer pil 67.9 34 0.00074 28.3 7.6 108 58-196 86-201 (209)
231 COG2179 Predicted hydrolase of 67.3 17 0.00037 29.0 5.5 36 101-136 47-82 (175)
232 COG0525 ValS Valyl-tRNA synthe 66.6 6.1 0.00013 39.5 3.5 81 151-233 249-348 (877)
233 PRK01655 spxA transcriptional 64.5 11 0.00025 28.5 4.0 44 87-137 2-49 (131)
234 KOG1752|consensus 64.2 28 0.00062 25.4 5.8 33 86-126 16-48 (104)
235 cd02977 ArsC_family Arsenate R 63.5 11 0.00024 27.1 3.7 41 89-136 3-47 (105)
236 cd03032 ArsC_Spx Arsenate Redu 62.8 17 0.00036 26.8 4.5 44 87-137 2-49 (115)
237 TIGR00995 3a0901s06TIC22 chlor 62.3 27 0.00058 30.1 6.1 93 54-170 77-169 (270)
238 KOG2507|consensus 61.1 39 0.00084 31.0 7.1 33 162-200 67-99 (506)
239 cd03073 PDI_b'_ERp72_ERp57 PDI 60.7 64 0.0014 23.6 7.5 44 164-214 65-109 (111)
240 cd03036 ArsC_like Arsenate Red 60.5 14 0.00031 27.0 3.8 41 89-136 3-47 (111)
241 cd03041 GST_N_2GST_N GST_N fam 60.5 45 0.00097 22.2 6.1 21 88-108 3-23 (77)
242 PF08139 LPAM_1: Prokaryotic m 59.0 7.3 0.00016 20.7 1.4 17 2-18 7-23 (25)
243 PF06764 DUF1223: Protein of u 58.8 25 0.00055 28.9 5.3 37 86-125 1-37 (202)
244 PF06953 ArsD: Arsenical resis 58.2 78 0.0017 23.8 8.4 90 86-213 4-99 (123)
245 TIGR01617 arsC_related transcr 56.8 24 0.00052 26.0 4.5 42 89-137 3-48 (117)
246 PF08821 CGGC: CGGC domain; I 56.6 34 0.00074 25.1 5.2 47 73-124 26-73 (107)
247 KOG3414|consensus 56.5 87 0.0019 23.9 10.4 41 82-125 23-64 (142)
248 TIGR02743 TraW type-F conjugat 54.3 47 0.001 27.4 6.1 35 152-194 165-199 (202)
249 PRK12559 transcriptional regul 53.6 27 0.00058 26.5 4.4 43 87-136 2-48 (131)
250 PF01323 DSBA: DSBA-like thior 53.1 22 0.00048 28.1 4.1 41 86-127 2-42 (193)
251 PF05768 DUF836: Glutaredoxin- 51.6 17 0.00038 24.8 2.8 36 88-126 3-38 (81)
252 COG5633 Predicted periplasmic 47.0 30 0.00066 25.8 3.5 17 1-17 1-17 (123)
253 TIGR02742 TrbC_Ftype type-F co 44.5 1.4E+02 0.003 22.7 10.0 69 103-189 12-82 (130)
254 cd03060 GST_N_Omega_like GST_N 44.4 52 0.0011 21.4 4.2 30 90-124 4-33 (71)
255 PRK13344 spxA transcriptional 43.4 54 0.0012 24.9 4.6 44 87-137 2-49 (132)
256 PF04278 Tic22: Tic22-like fam 40.7 52 0.0011 28.4 4.7 85 56-161 72-161 (274)
257 cd03051 GST_N_GTT2_like GST_N 39.6 78 0.0017 20.2 4.6 20 89-108 3-22 (74)
258 PF00571 CBS: CBS domain CBS d 38.6 91 0.002 18.9 4.8 18 178-195 29-46 (57)
259 PRK12359 flavodoxin FldB; Prov 37.8 1.2E+02 0.0025 24.2 6.0 35 182-216 130-165 (172)
260 PF02966 DIM1: Mitosis protein 37.7 1.1E+02 0.0023 23.5 5.3 44 81-126 19-62 (133)
261 PRK09810 entericidin A; Provis 37.7 30 0.00065 20.8 1.9 19 1-19 2-20 (41)
262 PF11211 DUF2997: Protein of u 36.8 75 0.0016 19.7 3.7 32 182-215 2-33 (48)
263 cd03025 DsbA_FrnE_like DsbA fa 36.6 40 0.00086 26.7 3.2 26 88-113 4-29 (193)
264 KOG4614|consensus 36.5 44 0.00095 28.3 3.3 35 180-215 249-283 (287)
265 TIGR01352 tonB_Cterm TonB fami 36.5 71 0.0015 20.7 4.0 38 179-216 12-50 (74)
266 KOG0913|consensus 35.8 7.9 0.00017 32.5 -1.1 36 81-118 39-74 (248)
267 COG3011 Predicted thiol-disulf 35.3 2.1E+02 0.0045 22.1 7.0 37 82-122 6-42 (137)
268 PRK10178 D-alanyl-D-alanine di 35.3 1.7E+02 0.0038 23.7 6.6 68 52-129 7-74 (184)
269 PF03544 TonB_C: Gram-negative 34.7 46 0.00099 22.0 2.8 37 179-215 18-55 (79)
270 cd03035 ArsC_Yffb Arsenate Red 34.1 91 0.002 22.5 4.4 42 89-137 3-48 (105)
271 TIGR01672 AphA HAD superfamily 33.8 66 0.0014 27.1 4.1 57 68-125 68-139 (237)
272 cd03052 GST_N_GDAP1 GST_N fami 32.7 1.1E+02 0.0024 20.1 4.5 32 89-125 3-34 (73)
273 PF06291 Lambda_Bor: Bor prote 32.3 33 0.00071 24.8 1.7 19 1-19 1-19 (97)
274 PF09673 TrbC_Ftype: Type-F co 32.1 2.1E+02 0.0044 21.0 8.7 68 103-187 11-80 (113)
275 PF01216 Calsequestrin: Calseq 31.5 3.1E+02 0.0066 24.8 7.9 43 161-215 101-143 (383)
276 PF13103 TonB_2: TonB C termin 31.2 1.1E+02 0.0023 20.7 4.2 40 178-217 27-67 (85)
277 cd08361 PpCmtC_N N-terminal do 31.1 2E+02 0.0044 20.7 6.4 19 181-199 103-121 (124)
278 cd03045 GST_N_Delta_Epsilon GS 30.9 1.3E+02 0.0029 19.3 4.6 20 89-108 3-22 (74)
279 COG4545 Glutaredoxin-related p 30.8 1.8E+02 0.0039 20.0 5.6 42 87-135 5-46 (85)
280 cd08351 ChaP_like ChaP, an enz 30.6 1.9E+02 0.0042 20.7 5.9 18 179-196 103-120 (123)
281 TIGR02652 conserved hypothetic 30.3 16 0.00034 28.2 -0.2 18 89-106 6-23 (163)
282 cd08362 BphC5-RrK37_N_like N-t 29.5 2E+02 0.0044 20.1 6.4 18 180-197 100-117 (120)
283 TIGR00156 conserved hypothetic 29.4 1.6E+02 0.0034 22.3 5.1 10 1-10 1-10 (126)
284 PRK10026 arsenate reductase; P 29.0 1.9E+02 0.0042 22.3 5.6 44 87-137 4-51 (141)
285 PF09654 DUF2396: Protein of u 28.0 17 0.00037 27.9 -0.3 18 89-106 3-20 (161)
286 cd03031 GRX_GRX_like Glutaredo 27.9 2.6E+02 0.0056 21.6 6.3 26 94-126 15-40 (147)
287 PF08235 LNS2: LNS2 (Lipin/Ned 27.4 3.1E+02 0.0067 21.6 8.5 56 74-137 9-67 (157)
288 PF14427 Pput2613-deam: Pput_2 27.1 84 0.0018 23.2 3.1 42 74-122 58-99 (118)
289 cd00570 GST_N_family Glutathio 25.8 82 0.0018 19.3 2.8 17 92-108 6-22 (71)
290 cd03059 GST_N_SspA GST_N famil 25.4 1.5E+02 0.0033 18.9 4.1 18 89-106 3-20 (73)
291 PF05228 CHASE4: CHASE4 domain 24.7 1.9E+02 0.0041 21.9 5.1 18 178-195 49-66 (161)
292 PF12681 Glyoxalase_2: Glyoxal 24.5 1.5E+02 0.0032 20.3 4.2 15 180-194 93-107 (108)
293 COG2372 CopC Uncharacterized p 24.3 2.2E+02 0.0047 21.6 5.0 26 56-81 55-80 (127)
294 PRK10449 heat-inducible protei 23.8 62 0.0013 24.8 2.1 19 1-19 1-19 (140)
295 cd07262 Glo_EDI_BRP_like_19 Th 23.4 2.2E+02 0.0048 20.1 5.0 58 117-195 65-122 (123)
296 PRK13208 valS valyl-tRNA synth 23.2 46 0.00099 33.3 1.6 57 180-237 290-352 (800)
297 COG5567 Predicted small peripl 22.7 1.8E+02 0.0039 18.7 3.6 15 1-15 1-15 (58)
298 TIGR02826 RNR_activ_nrdG3 anae 22.4 94 0.002 24.0 2.9 26 74-100 6-34 (147)
299 cd08343 ED_TypeI_classII_C C-t 22.2 3.1E+02 0.0067 19.8 8.2 62 115-199 58-119 (131)
300 TIGR03759 conj_TIGR03759 integ 21.7 85 0.0018 25.8 2.5 48 84-137 110-158 (200)
301 COG3065 Slp Starvation-inducib 21.4 2.3E+02 0.0049 23.0 4.8 17 3-19 9-25 (191)
302 cd07252 BphC1-RGP6_N_like N-te 21.1 3.1E+02 0.0068 19.4 7.8 19 180-198 100-118 (120)
303 KOG2116|consensus 20.8 4E+02 0.0086 26.2 7.0 34 105-138 563-599 (738)
304 PF07845 DUF1636: Protein of u 20.7 3.3E+02 0.0071 20.3 5.3 38 178-216 53-90 (116)
305 PRK06724 hypothetical protein; 20.3 3.6E+02 0.0078 19.8 6.4 61 116-197 63-123 (128)
306 PF12393 Dr_adhesin: Dr family 20.2 1.3E+02 0.0028 15.2 2.0 16 1-16 1-16 (21)
307 cd07241 Glo_EDI_BRP_like_3 Thi 20.2 3.1E+02 0.0068 19.1 6.6 23 116-138 70-92 (125)
308 PF15092 UPF0728: Uncharacteri 20.2 3.2E+02 0.007 19.2 4.9 43 83-125 5-47 (88)
No 1
>PRK15000 peroxidase; Provisional
Probab=100.00 E-value=1.4e-38 Score=261.75 Aligned_cols=187 Identities=41% Similarity=0.817 Sum_probs=166.4
Q ss_pred ccCCCCCCceeeeeecCCce---eEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 54 VVMKPAPYWKGTAVVDGNIK---EIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~---~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.+|+++|+|+++++ .++|+ .++++++ +||++||+||++.|||+|+.|++.|++++++|+++|++||+||.|+.+.
T Consensus 3 ~vg~~aPdF~~~~~-~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~ 81 (200)
T PRK15000 3 LVTRQAPDFTAAAV-LGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV 81 (200)
T ss_pred cCCCcCCCCEeecc-cCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 47999999999664 23445 4566666 7999999999888999999999999999999999999999999999998
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
++.|.+...+ ..|+.+++||+++|+++.+++.||+..++.|+..|++||||++|+|++.+.++.+.++++++++
T Consensus 82 ~~~w~~~~~~------~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eil 155 (200)
T PRK15000 82 HNAWRNTPVD------KGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEML 155 (200)
T ss_pred HHHHHhhHHH------hCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHH
Confidence 8898875433 4444457999999999999999999877778889999999999999999999999999999999
Q ss_pred HHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 210 RLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 210 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+.|++++..+++++.||+||+||+++|.+.++..++|+
T Consensus 156 r~l~al~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~ 193 (200)
T PRK15000 156 RMVDALQFHEEHGDVCPAQWEKGKEGMNASPDGVAKYL 193 (200)
T ss_pred HHHHHhhhHHhcCCCcCCCCCCCCceeccCHHHHHHHH
Confidence 99999999999999999999999999999999988874
No 2
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=100.00 E-value=2.2e-38 Score=257.43 Aligned_cols=184 Identities=35% Similarity=0.696 Sum_probs=167.4
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
..+|+++|+|+...+.+++...++|++|+||++||+|||++|||+|+.|++.|++++++|+++|+++|+||.|+.+.+++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 46899999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
|.+.... +.+++||+++|+++.+++.||+..+..|+..|++||||++|+|++++....+.+++.+++++.|
T Consensus 82 ~~~~~~~---------~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l 152 (187)
T PRK10382 82 WHSSSET---------IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKI 152 (187)
T ss_pred HHHhhcc---------ccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 9986422 2367999999999999999999765556677999999999999999988888888999999999
Q ss_pred Hhhhccccc-CCccCCCCcCCCccccCCchhhhc
Q psy15453 213 RAFQYTDEH-GEACPSGWQPGQRTISNREEDEKE 245 (247)
Q Consensus 213 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
+++|+.+++ ++.||.||+||+.+|.+.+...++
T Consensus 153 ~alq~~~~~~g~~~p~~w~~~~~~~~~~~~~~~~ 186 (187)
T PRK10382 153 KAAQYVASHPGEVCPAKWKEGEATLAPSLDLVGK 186 (187)
T ss_pred HhhhhHhhcCCeEeCCCCCcCCcceecCHHHhcc
Confidence 999999998 799999999999999998775543
No 3
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=100.00 E-value=2.4e-38 Score=267.97 Aligned_cols=192 Identities=39% Similarity=0.791 Sum_probs=171.4
Q ss_pred cccccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 49 GWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 49 ~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
....+.+|+++|+|+++++.+++++.++|+++ +||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|++
T Consensus 64 ~~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~ 143 (261)
T PTZ00137 64 TVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP 143 (261)
T ss_pred ccccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 44557899999999997655666778999998 89999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
+.+++|.+...+ ..|..+++||+++|+++.+++.||+..+ .|...|++||||++|+|++.+..+.+.++++++
T Consensus 144 ~~h~aw~~~~~~------~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~e 216 (261)
T PTZ00137 144 FSHKAWKELDVR------QGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDE 216 (261)
T ss_pred HHHHHHHhhhhh------hccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 889999875322 3344468999999999999999999753 466789999999999999999888888999999
Q ss_pred HHHHHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 208 TLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 208 il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+++.|+++|.++++++.||++|+||+++|.+.+...+||+
T Consensus 217 iLr~l~alq~~~~~g~~cPanW~~g~~~~~~~~~~~~~~~ 256 (261)
T PTZ00137 217 TLRLFDAVQFAEKTGNVCPVNWKQGDQAMKPDSQSVKQYL 256 (261)
T ss_pred HHHHHHHhchhhhcCCCcCCCCCcCCceecCCcccHHHHH
Confidence 9999999999999999999999999999999998888874
No 4
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=247.32 Aligned_cols=186 Identities=45% Similarity=0.897 Sum_probs=174.6
Q ss_pred ccccCCCCCCceeeeeecCCc---eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNI---KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G---~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
.+.+|+++|+|+.+++. .| .+++++++.||++||+|||+.+.++|+.|+..+++.|++|+++|++||+||.|+.+
T Consensus 2 ~~lIg~~aP~F~~~a~~--~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~f 79 (194)
T COG0450 2 MSLIGKKAPDFTANAVL--GGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVF 79 (194)
T ss_pred ccccCCcCCCcEEEEEe--cCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHH
Confidence 35789999999998874 34 49999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
++.+|.+...+ ..|+.+.+||++.|.+++++++||+..++.|...+.+|||||+|+|+++.+++.+.+++.+++
T Consensus 80 sH~aW~~~~~~------~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEi 153 (194)
T COG0450 80 SHKAWKATIRE------AGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEI 153 (194)
T ss_pred HHHHHHhcHHh------cCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHH
Confidence 99999998776 777777999999999999999999999888889999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCCccCCCCcCCCccccCCchhhhcc
Q psy15453 209 LRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEE 246 (247)
Q Consensus 209 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (247)
++.|+++|..+++++.||+||++|+.+|.+..+. .|+
T Consensus 154 lR~idAlq~~~~hg~vcPanW~~G~~~i~p~~~~-~~~ 190 (194)
T COG0450 154 LRVIDALQFVAKHGEVCPANWKPGDKTIKPSPDL-GEY 190 (194)
T ss_pred HHHHHHHHHHHHhCCCccCCCCCCCccccCCccc-hhh
Confidence 9999999999999999999999999999999887 554
No 5
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=100.00 E-value=1.7e-37 Score=255.57 Aligned_cols=190 Identities=45% Similarity=0.919 Sum_probs=169.6
Q ss_pred ccccCCCCCCceeeee-ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 52 NAVVMKPAPYWKGTAV-VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~-~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
.+.+|+++|+|++.++ .+++|+.++|++++||++||+||+++||++|+.+++.|++++++|+++|++||+||.|+.++.
T Consensus 5 ~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAH 84 (199)
T ss_pred ccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHH
Confidence 4678999999998763 367889999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
..|...... ..+..+++||+++|+++++++.||+...+.|+..|++||||++|+|++.+.++.+.+++++++++
T Consensus 85 ~~~~~~~~~------~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~ 158 (199)
T PTZ00253 85 LQWTLQERK------KGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLR 158 (199)
T ss_pred HHHHhChHh------hCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence 887653321 22333579999999999999999998776677789999999999999999888889999999999
Q ss_pred HHHhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 211 LVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 211 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
.|++++..++++++||.||.||+++|.+.+...+|++
T Consensus 159 ~l~a~~~~~~~~~~cp~~w~~g~~~~~~~~~~~~~~~ 195 (199)
T PTZ00253 159 LLEAFQFVEKHGEVCPANWKKGDPTMKPDPNKSKEGF 195 (199)
T ss_pred HHHhhhhHHhcCCEeCCCCCcCCccccCChHHHHHHh
Confidence 9999999999999999999999999999998888764
No 6
>PRK13190 putative peroxiredoxin; Provisional
Probab=100.00 E-value=8.4e-37 Score=251.79 Aligned_cols=182 Identities=34% Similarity=0.664 Sum_probs=160.8
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
+.+|+++|+|++.+ ..| .+++++++||++||+|++++|||+|+.|++.|++++++|+++|+++|+||.|+.+.+.+
T Consensus 2 ~~vG~~aP~F~~~~---~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~ 77 (202)
T PRK13190 2 VKLGQKAPDFTVNT---TKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIA 77 (202)
T ss_pred CCCCCCCCCcEEec---CCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 56899999999954 356 79999999998888766699999999999999999999999999999999999999889
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
|.++... ..|. .++||+++|+++.+++.||+.....|..+|++||||++|+|++++.++...+++.+++++.|
T Consensus 78 w~~~~~~------~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l 150 (202)
T PRK13190 78 WLRDIEE------RFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT 150 (202)
T ss_pred HHHhHHH------hcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 8876543 3333 36899999999999999999766566678999999999999999988888889999999999
Q ss_pred HhhhcccccCCccCCCCcCCCccccCCchhhhc
Q psy15453 213 RAFQYTDEHGEACPSGWQPGQRTISNREEDEKE 245 (247)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (247)
++++..+++++.||+||+||+++|.+.....++
T Consensus 151 ~~l~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~ 183 (202)
T PRK13190 151 KALQVNWKRKVATPANWQPGQEGIVPAPSTLDE 183 (202)
T ss_pred HHhhhHHhcCCCcCCCCCcCCceecCCCCCHHH
Confidence 999999999999999999999999987765444
No 7
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=100.00 E-value=2.7e-36 Score=246.11 Aligned_cols=181 Identities=40% Similarity=0.768 Sum_probs=159.1
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
.+|+++|+|++.++.+++...+++++++||++||+|||++|||+|+.+++.|++++++|+++|++||+||.|+.+.+++|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~ 82 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW 82 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence 56999999999664344334789999999999999999999999999999999999999988999999999999888888
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
.+.... ..+++|++++|++..+++.||+.....|+..|++||||++|+|++++.......++.+++++.|+
T Consensus 83 ~~~~~~---------~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 83 HDTSEA---------IGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred Hhhhhh---------ccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 775422 12578999999999999999998666666789999999999999999877777779999999999
Q ss_pred hhhccccc-CCccCCCCcCCCccccCCchhh
Q psy15453 214 AFQYTDEH-GEACPSGWQPGQRTISNREEDE 243 (247)
Q Consensus 214 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 243 (247)
+++...++ ++.||++|++|++++.+.+--.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (187)
T TIGR03137 154 AAQYVAAHPGEVCPAKWKEGAETLKPSLDLV 184 (187)
T ss_pred HhhhHHhcCCeeeCCCCCcCCccccCChHhh
Confidence 99999998 7999999999999999987633
No 8
>PRK13191 putative peroxiredoxin; Provisional
Probab=100.00 E-value=1.1e-35 Score=246.85 Aligned_cols=183 Identities=31% Similarity=0.621 Sum_probs=159.3
Q ss_pred ccccCCCCCCceeeeeecCCceeEEc-CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKL-TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l-~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
.+.+|+++|+|++.+ .+|+ +++ ++++||++||+|+|++|||+|+.|++.|++++++|+++|++|++||.|+..++
T Consensus 6 ~~~iG~~aPdF~l~~---~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h 81 (215)
T PRK13191 6 IPLIGEKFPEMEVIT---THGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH 81 (215)
T ss_pred cccCCCcCCCCEeec---CCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 567899999999954 4776 556 55899998887777999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-CccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-GHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
.+|.+..+. ..+. +.+||+++|+++.+++.||+..+.. +...|++||||++|+|++++.++.+.++++++++
T Consensus 82 ~aw~~~~~~------~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eil 154 (215)
T PRK13191 82 IEWVMWIEK------NLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEIL 154 (215)
T ss_pred HHHHhhHHH------hcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHH
Confidence 998875543 2233 6899999999999999999975433 4578999999999999999989999999999999
Q ss_pred HHHHhhhcccccCCccCCCCcC----CCccccCCchhhhc
Q psy15453 210 RLVRAFQYTDEHGEACPSGWQP----GQRTISNREEDEKE 245 (247)
Q Consensus 210 ~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 245 (247)
+.|++++.++++++.||+||+| |+++|.+..+..+|
T Consensus 155 r~l~alq~~~~~~~~~P~~w~~~~~~g~~~~~~~~~~~~~ 194 (215)
T PRK13191 155 RAIRALQLVDKAGVVTPANWPNNELIGDKVINPAPRTIKD 194 (215)
T ss_pred HHHHHhhhhhhcCCCcCCCCCCCCCCCCceecCCCCCHHH
Confidence 9999999999999999999997 99999998774443
No 9
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=100.00 E-value=3.8e-35 Score=236.55 Aligned_cols=172 Identities=60% Similarity=1.101 Sum_probs=151.7
Q ss_pred cCCCCCCceeeeeec-CCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 55 VMKPAPYWKGTAVVD-GNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d-~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
+|+++|+|+++++.+ ++|+.++|++++||++||+||+++||++|+.+++.|++++++|+++|+.+++||.|+.+..+.|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~ 80 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence 589999999976633 3448999999999999999999999999999999999999999999999999999998777778
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
.+...+ .++..+++|++++|+++.+++.||+.....+...|++||||++|+|++.+++..+..++.+++++.|+
T Consensus 81 ~~~~~~------~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~ 154 (173)
T cd03015 81 RNTPRK------EGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLD 154 (173)
T ss_pred HHhhhh------hCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHH
Confidence 775432 22223689999999999999999998766666789999999999999999887777788999999999
Q ss_pred hhhcccccCCccCCCCcCC
Q psy15453 214 AFQYTDEHGEACPSGWQPG 232 (247)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~ 232 (247)
.++...++++.||.+|.||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~ 173 (173)
T cd03015 155 ALQFVEEHGEVCPANWKPG 173 (173)
T ss_pred HhhhhhhcCCCcCCCCCCC
Confidence 9999999999999999998
No 10
>PRK13189 peroxiredoxin; Provisional
Probab=100.00 E-value=3.7e-35 Score=245.01 Aligned_cols=183 Identities=34% Similarity=0.642 Sum_probs=159.5
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
..+.+|+++|+|+++++ +|+ ++++++ +||++||+|+|++|||+|..|++.|++++++|+++|++||+||.|+...
T Consensus 7 ~~~~vG~~aPdF~~~~~---~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~ 82 (222)
T PRK13189 7 RMPLIGDKFPEFEVKTT---HGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFS 82 (222)
T ss_pred ccccCCCcCCCcEeEcC---CCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHH
Confidence 35678999999999654 664 778774 9998888777799999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-CccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-GHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
+.+|.+.... ..|. +++||+++|.++.+++.||+..... +...|++||||++|+|+++++++.+.+++.+++
T Consensus 83 h~aw~~~~~~------~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~ei 155 (222)
T PRK13189 83 HIKWVEWIKE------KLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEI 155 (222)
T ss_pred HHHHHHhHHH------hcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHH
Confidence 9999887543 3333 5799999999999999999875432 347899999999999999998888889999999
Q ss_pred HHHHHhhhcccccCCccCCCCcCCC----ccccCCchhhh
Q psy15453 209 LRLVRAFQYTDEHGEACPSGWQPGQ----RTISNREEDEK 244 (247)
Q Consensus 209 l~~l~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 244 (247)
++.|++++..+++++.||+||+||+ ++|.+......
T Consensus 156 lr~l~alq~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~ 195 (222)
T PRK13189 156 LRLVKALQTSDEKGVATPANWPPNDLIKDKVIVPPASSVE 195 (222)
T ss_pred HHHHHHhhhHhhcCcCcCCCCCCCCCCCCceeeCCCCCHH
Confidence 9999999999999999999999999 99988876443
No 11
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=100.00 E-value=1e-34 Score=239.66 Aligned_cols=176 Identities=32% Similarity=0.558 Sum_probs=154.4
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~g-k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
+|+++|+|++.+. +| .+++++++| |++||+|++++|||+|..+++.|++++++|+++|++|++||.|+.+++.+|
T Consensus 1 vG~~aP~F~~~~~---~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADTT---HG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEecC---CC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 5899999999543 66 589999998 777776666999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--CccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
.+.... +.+ .+++||+++|+++.+++.||+..... +...|++||||++|+|++.+.++...+++.+++++.
T Consensus 77 ~~~i~~------~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~ 149 (203)
T cd03016 77 IEDIEE------YTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRV 149 (203)
T ss_pred HhhHHH------hcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence 886544 323 36899999999999999999875432 345689999999999999998888888999999999
Q ss_pred HHhhhcccccCCccCCCCcCCCccccCCch
Q psy15453 212 VRAFQYTDEHGEACPSGWQPGQRTISNREE 241 (247)
Q Consensus 212 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (247)
|++++..+++++.||+||+||+++|.+..-
T Consensus 150 l~~lq~~~~~~~~~p~~w~~g~~~~~~~~~ 179 (203)
T cd03016 150 VDALQLTDKHKVATPANWKPGDDVIVPPSV 179 (203)
T ss_pred HHHHhhHhhcCcCcCCCCCCCCceecCCCC
Confidence 999999999999999999999999988765
No 12
>PRK13599 putative peroxiredoxin; Provisional
Probab=100.00 E-value=2.1e-34 Score=239.09 Aligned_cols=178 Identities=30% Similarity=0.566 Sum_probs=155.7
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
.+|+++|+|++. +.+|+.+.+++++||++||+|+|++|||+|..|++.|++++++|+++|+++|+||.|+.+++.+|
T Consensus 3 ~~Gd~aPdF~l~---t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w 79 (215)
T PRK13599 3 LLGEKFPSMEVV---TTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKW 79 (215)
T ss_pred CCCCCCCCCEeE---CCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 689999999994 44888888899999988776666999999999999999999999999999999999999999998
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCc-cceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH-SLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~-~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
.+.++. ..+. +++||+++|+++.+++.||+.....+. ..|++||||++|+|++++.++...+++.+++++.|
T Consensus 80 ~~~i~~------~~~~-~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l 152 (215)
T PRK13599 80 VEWIKD------NTNI-AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRAL 152 (215)
T ss_pred HHhHHH------hcCC-CCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHH
Confidence 876532 1122 579999999999999999986443332 57999999999999999988888889999999999
Q ss_pred HhhhcccccCCccCCCCcC----CCccccCCch
Q psy15453 213 RAFQYTDEHGEACPSGWQP----GQRTISNREE 241 (247)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~ 241 (247)
++++.+++++++||+||+| |+++|.+..-
T Consensus 153 ~~lq~~~~~~~~~p~~w~~~~~~g~~~~~~~~~ 185 (215)
T PRK13599 153 KALQTADQYGVALPEKWPNNYLIKDHVIVPPST 185 (215)
T ss_pred HHhhhhhhcCCCcCCCCCCCCCCCCcEEEcCCC
Confidence 9999999999999999999 9999987654
No 13
>KOG0852|consensus
Probab=100.00 E-value=4.3e-34 Score=221.69 Aligned_cols=189 Identities=67% Similarity=1.157 Sum_probs=181.4
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
..+..++|+|+.+.++|+.-+.++|++|+||++++.|+|..+.-+|+.|+-++...+.+|++.|.+||++|+|+.+++.+
T Consensus 4 ~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 4 EVVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLA 83 (196)
T ss_pred cccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhh
Confidence 34566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
|+..-++ +.|+.++++|+++|.+.++++.||+..++.|...+..||||++|.++.+.++..+.+++++++++.+
T Consensus 84 W~ntprk------~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLv 157 (196)
T KOG0852|consen 84 WINTPRK------QGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLV 157 (196)
T ss_pred HhcCchh------hCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHH
Confidence 9999888 8888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCccCCCCcCCCccccCCchhhhccC
Q psy15453 213 RAFQYTDEHGEACPSGWQPGQRTISNREEDEKEEL 247 (247)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
+++|.++++++.||++|.||.++|++.+++-|||.
T Consensus 158 qAfQ~td~~geVcPagW~pgs~tikp~~~~skeyf 192 (196)
T KOG0852|consen 158 QAFQFTDEHGEVCPAGWKPGSDTIKPDVKDSKEYF 192 (196)
T ss_pred HHHhhhhccCccccCCCCCCCcccCCCcchhHHHH
Confidence 99999999999999999999999999999999984
No 14
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=203.72 Aligned_cols=149 Identities=34% Similarity=0.543 Sum_probs=136.6
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
..+.+|+++|+|+| .|++|+.++|++++||++||+|+|..++|.|..|+..+++.+++|++.|++|||||.|+++++
T Consensus 2 ~~l~~G~~aPdF~L---p~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~ 78 (157)
T COG1225 2 MMLKVGDKAPDFEL---PDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH 78 (157)
T ss_pred CcCCCCCcCCCeEe---ecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 36889999999999 566999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCC------ccceeEEEEcCCCcEEEEEecCCCCCCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG------HSLRGLFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g------~~~p~~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
++|.+++ +++|++|+|++++++++||+..++.. ...|++||||++|+|++++ .......+
T Consensus 79 ~~F~~k~-------------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h 144 (157)
T COG1225 79 KKFAEKH-------------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGH 144 (157)
T ss_pred HHHHHHh-------------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCccc
Confidence 9999975 78999999999999999999876541 3679999999999999999 66677888
Q ss_pred HHHHHHHHHhhh
Q psy15453 205 VEETLRLVRAFQ 216 (247)
Q Consensus 205 ~~~il~~l~~l~ 216 (247)
.+++++.|+.+.
T Consensus 145 ~~~vl~~l~~l~ 156 (157)
T COG1225 145 ADEVLAALKKLA 156 (157)
T ss_pred HHHHHHHHHHhc
Confidence 999999998874
No 15
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.96 E-value=5.9e-28 Score=189.41 Aligned_cols=145 Identities=40% Similarity=0.664 Sum_probs=127.5
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHR 131 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~g-k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~ 131 (247)
+.+|+++|+|++ .+.+|+.+++++++| |++||+||+++||+.|+.+++.|++++++++++++++|+||.|+++.++
T Consensus 1 ~~~G~~~p~~~l---~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~ 77 (149)
T cd03018 1 LEVGDKAPDFEL---PDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR 77 (149)
T ss_pred CCCCCcCCCcEe---cCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH
Confidence 467999999999 455899999999999 9999999999999999999999999999999889999999999998888
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCC--chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLT--HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~--~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
+|.++. +.+|++++|.+ +.+++.||+.....++..|++||||++|+|++.+.+......+..++.
T Consensus 78 ~~~~~~-------------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~ 144 (149)
T cd03018 78 AWAEEN-------------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYD 144 (149)
T ss_pred HHHHhc-------------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHH
Confidence 888754 57999999987 999999999865445566799999999999999988876666677777
Q ss_pred HHHH
Q psy15453 210 RLVR 213 (247)
Q Consensus 210 ~~l~ 213 (247)
+.|+
T Consensus 145 ~~~~ 148 (149)
T cd03018 145 EALD 148 (149)
T ss_pred HHhh
Confidence 7665
No 16
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.95 E-value=3.9e-27 Score=188.80 Aligned_cols=148 Identities=25% Similarity=0.399 Sum_probs=125.5
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCC-CCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF-TFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~-Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.....+.+|+++|+|++ .|.+|+.+++++++||++||+|| ++| ||+|+.|++.|+++++++. +++|++||.|+
T Consensus 13 ~~~~~~~~G~~~P~f~l---~~~~g~~v~l~~~~Gk~vvl~f~-~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~ 86 (167)
T PRK00522 13 VAGSLPQVGDKAPDFTL---VANDLSDVSLADFAGKRKVLNIF-PSIDTGVCATSVRKFNQEAAELD--NTVVLCISADL 86 (167)
T ss_pred eeCCCCCCCCCCCCeEE---EcCCCcEEehHHhCCCEEEEEEE-cCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence 34456789999999999 55699999999999999999999 655 9999999999999999983 89999999999
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcc-eeEEecC-CchHHHHhCCcccC---CCccceeEEEEcCCCcEEEEEecC-CC
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLK-IPLLSDL-THEISRDYGVYLED---KGHSLRGLFIIDREGIVRQITLND-LP 200 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~-~~~~~~~~~~~~~~---~g~~~p~~~lId~~G~v~~~~~~~-~~ 200 (247)
++.+++|.+++ +.. +++++|. ++.+++.||+.... .|+..|++||||++|+|++.+++. ..
T Consensus 87 ~~~~~~f~~~~-------------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~ 153 (167)
T PRK00522 87 PFAQKRFCGAE-------------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEIT 153 (167)
T ss_pred HHHHHHHHHhC-------------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcC
Confidence 98889998853 344 7999995 56999999997543 466678999999999999999644 46
Q ss_pred CCCCHHHHHHHHHh
Q psy15453 201 VGRSVEETLRLVRA 214 (247)
Q Consensus 201 ~~~~~~~il~~l~~ 214 (247)
..++++++++.|++
T Consensus 154 ~~~~~~~~l~~l~~ 167 (167)
T PRK00522 154 NEPDYDAALAALKA 167 (167)
T ss_pred CCCCHHHHHHHhhC
Confidence 67789999988763
No 17
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.95 E-value=4e-27 Score=186.09 Aligned_cols=146 Identities=26% Similarity=0.438 Sum_probs=124.0
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
..+.+|+++|+|+++ |.+|+.+++++++||++||+||++.|||+|+.+++.|++++++++++++++|+|+.|+.++.
T Consensus 2 ~~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~ 78 (154)
T PRK09437 2 NPLKAGDIAPKFSLP---DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKL 78 (154)
T ss_pred CcCCCCCcCCCcEee---CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 357889999999994 55999999999999999999996678999999999999999999999999999999999998
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--C----ccceeEEEEcCCCcEEEEEecCCCCCCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--G----HSLRGLFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g----~~~p~~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
.+|.++. +.+|+++.|+++.+.+.||+..... + ...|++||||++|+|++.+.+... ...
T Consensus 79 ~~~~~~~-------------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~-~~~ 144 (154)
T PRK09437 79 SRFAEKE-------------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKT-SNH 144 (154)
T ss_pred HHHHHHh-------------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCc-chh
Confidence 9988854 5789999999999999999874321 1 123789999999999999966543 445
Q ss_pred HHHHHHHHH
Q psy15453 205 VEETLRLVR 213 (247)
Q Consensus 205 ~~~il~~l~ 213 (247)
.+++++.++
T Consensus 145 ~~~~~~~~~ 153 (154)
T PRK09437 145 HDVVLDYLK 153 (154)
T ss_pred HHHHHHHHh
Confidence 777777765
No 18
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.95 E-value=4.8e-27 Score=183.26 Aligned_cols=140 Identities=28% Similarity=0.436 Sum_probs=120.1
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
++|+++|+|++ .+.+|+.++|++++||++||+||++.|||+|+.+++.|++++++++ ++.||+||.|..+.+++|
T Consensus 1 ~~G~~aP~f~l---~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~ 75 (143)
T cd03014 1 KVGDKAPDFTL---VTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRW 75 (143)
T ss_pred CCCCCCCCcEE---ECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHH
Confidence 36899999999 4559999999999999999999955558999999999999999984 899999999998888999
Q ss_pred HHHhhccccccccCCCCCcceeEEecCC-chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC-CCCCCHHHHHH
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLT-HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL-PVGRSVEETLR 210 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~-~~~~~~~~il~ 210 (247)
.+++. ..+|++++|+. +.+.+.||+.....|...|++||||++|+|++.+.+.. ...++++++++
T Consensus 76 ~~~~~------------~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 76 CGAEG------------VDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred HHhcC------------CCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 88541 13789999996 99999999987666667899999999999999998654 45677777764
No 19
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.95 E-value=3.8e-27 Score=184.36 Aligned_cols=133 Identities=28% Similarity=0.461 Sum_probs=114.8
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCC-CCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLD-FTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~-~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
++|+++|+|++++ .+.+|+++++++++||++||+|| ++ |||+|+.++|.|++++++|+++++.+++|+.+......+
T Consensus 1 k~G~~~P~~~~~~-~~~~g~~~~l~~~~gk~~vv~f~-~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKD-LDLDGKPVSLSDFKGKPVVVNFW-ASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEE-EETTSEEEEGGGGTTSEEEEEEE-STTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEe-ecCCCCEecHHHhCCCeEEEEEE-ccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 5799999999854 24699999999999999999999 77 999999999999999999999999999999988777888
Q ss_pred HHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC---CccceeEEEEcCCCcEEEEEecCCCC
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK---GHSLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~---g~~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
|.++. +.+|+++.|+++.+.+.|++..... |+.+|+++|||++|+|++.+.+..+.
T Consensus 79 ~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~ 137 (146)
T PF08534_consen 79 FLKKY-------------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPD 137 (146)
T ss_dssp HHHHT-------------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBTT
T ss_pred HHHhh-------------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCCC
Confidence 77753 6799999999999999999864332 34789999999999999999887763
No 20
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.95 E-value=5.1e-27 Score=178.20 Aligned_cols=124 Identities=30% Similarity=0.554 Sum_probs=113.8
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWI 134 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~ 134 (247)
+|+++|+|++ .+.+|+.++|++++||++||+||+++|||+|..+++.|++++++|+++++++++|+.|+.++++.|.
T Consensus 1 vG~~~P~f~l---~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTL---TDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEE---ETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred CcCCCCCcEe---ECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence 6999999999 5669999999999999999999955599999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 135 NSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
+.. +.+|+++.|.++.+.+.|++.........|++||||++|+|+|.
T Consensus 78 ~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEY-------------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHH-------------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhh-------------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 875 58999999999999999999866555578999999999999974
No 21
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.95 E-value=1.3e-26 Score=179.78 Aligned_cols=136 Identities=33% Similarity=0.488 Sum_probs=118.3
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINS 136 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~ 136 (247)
+++|+|++ .|.+|+.+++++++||++||+||+++|||+|+.+++.|++++++++++++++|+|+.|+++...+|.+.
T Consensus 1 ~~~p~f~l---~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 1 DKAPDFTL---PDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCCccc---cCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 46899999 555899999999999999999998899999999999999999999988999999999999888888885
Q ss_pred hhccccccccCCCCCcceeEEecCCchHHHHhCCcccC---CCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 137 LKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED---KGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~---~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
. +.+|++++|+++.+++.||+.... .+...|++||||++|+|++.+.|.. ...++++++
T Consensus 78 ~-------------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~~ 139 (140)
T cd03017 78 Y-------------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEVL 139 (140)
T ss_pred h-------------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC-ccchHHHHh
Confidence 4 578999999999999999988431 1233499999999999999997666 566677765
No 22
>KOG0854|consensus
Probab=99.94 E-value=7.5e-26 Score=175.86 Aligned_cols=178 Identities=28% Similarity=0.546 Sum_probs=158.1
Q ss_pred cccccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
..+..|+.+|+|+..+ .-..+.++|+.|. +.||+-.|+.+.|+|..|+-++.+++.+|.++|+.+|+.|+|..++
T Consensus 4 ~~l~lgd~~PNfea~T----t~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves 79 (224)
T KOG0854|consen 4 PRLRLGDTVPNFEADT----TVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES 79 (224)
T ss_pred CcccccCcCCCccccc----cccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence 4678999999999643 3347999999865 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCC--cceeEEecCCchHHHHhCCcccCC------CccceeEEEEcCCCcEEEEEecCCCC
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDK--LKIPLLSDLTHEISRDYGVYLEDK------GHSLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~~~~~~~~~~~~~~~------g~~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
++.|++.++. +....+ ++||++.|++++++-.|+....+. |...++.||||++.+|+-.+.++..+
T Consensus 80 H~~Wi~DIks------~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~tt 153 (224)
T KOG0854|consen 80 HKDWIKDIKS------YAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTT 153 (224)
T ss_pred HHHHHHHHHH------HHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEccccc
Confidence 9999998865 333323 899999999999999999874432 45678999999999999999999999
Q ss_pred CCCHHHHHHHHHhhhcccccCCccCCCCcCCCccccC
Q psy15453 202 GRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISN 238 (247)
Q Consensus 202 ~~~~~~il~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
+++.+|+++.|++||.++++++++|.||+||+.+|+.
T Consensus 154 GRN~dEiLRvidsLqlt~~k~VaTP~nWkpg~~vmil 190 (224)
T KOG0854|consen 154 GRNFDEILRVIDSLQLTDKKGVATPVNWKPGDKVMIL 190 (224)
T ss_pred CcCHHHHHHHHHHHhhhcccccccccccCCCCceEEc
Confidence 9999999999999999999999999999999998763
No 23
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.93 E-value=4.7e-25 Score=170.95 Aligned_cols=134 Identities=46% Similarity=0.793 Sum_probs=115.8
Q ss_pred CCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHh
Q psy15453 58 PAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSL 137 (247)
Q Consensus 58 ~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~ 137 (247)
.+|+|++ .|.+|+++++++++||++||+||+++||++|..+++.|++++++|++.++++++|+.|+++...+|.++.
T Consensus 1 ~~p~f~l---~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTL---PATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCcee---ccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 4799999 4558999999999999999999999999999999999999999998889999999999988888888743
Q ss_pred hccccccccCCCCCcceeEEecCCchHHHHhCCcccCC---CccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 138 KKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK---GHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~---g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
. +.+|++++|+++.+++.||+..... +...|++||||++|+|++.+.+........+
T Consensus 78 ~------------~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~ 137 (140)
T cd02971 78 G------------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAE 137 (140)
T ss_pred c------------CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChH
Confidence 1 4689999999999999999885432 3456899999999999999988777444433
No 24
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.93 E-value=4.1e-25 Score=179.90 Aligned_cols=124 Identities=24% Similarity=0.359 Sum_probs=103.6
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC-ChHh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD-SHFT 129 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d-~~~~ 129 (247)
...+|+++|+|+++++ +++|+.++++++ +||++||+|| ++||++|+.++|.|+++++ ++++|++|+.+ +.++
T Consensus 38 ~~~~g~~~p~f~l~~~-~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~~----~~~~vi~v~~~~~~~~ 111 (185)
T PRK15412 38 SALIGKPVPKFRLESL-ENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLSA----QGIRVVGMNYKDDRQK 111 (185)
T ss_pred hhhcCCCCCCcCCccC-CCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHHH----cCCEEEEEECCCCHHH
Confidence 3567999999999665 333678887776 7999999999 9999999999999988753 48999999975 4566
Q ss_pred HHHHHHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..+|.++. +.+|+ ++.|+++.+.+.||+. .+|++|+||++|+|++.+.|..+
T Consensus 112 ~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~gv~------~~P~t~vid~~G~i~~~~~G~~~ 164 (185)
T PRK15412 112 AISWLKEL-------------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDLN 164 (185)
T ss_pred HHHHHHHc-------------CCCCceEEEcCCccHHHhcCCC------cCCeEEEECCCceEEEEEecCCC
Confidence 77777753 56787 4789999999999998 88999999999999999988765
No 25
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.93 E-value=1e-24 Score=172.65 Aligned_cols=135 Identities=31% Similarity=0.454 Sum_probs=116.3
Q ss_pred cCCCCCCceeeeeecCCceeEEcCC-CCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHHHHHhcCc-EEEEEeCCChHhHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTD-YRGKYLVFFFYPLDFTFVCPTE-VLALNEKIDEFHKIGA-EVVGVSVDSHFTHR 131 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~-~~gk~vvl~F~~a~~Cp~C~~~-~~~l~~l~~~~~~~~~-~vl~Vs~d~~~~~~ 131 (247)
+|+++|+|++++..+++|+.++|++ ++||++||+|+|+.|||+|..| ++.+++.+++|+++|+ +|++||.|+++.++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 5899999999665333589999999 5999999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC--Cc---cceeEEEEcCCCcEEEEEecCCCC
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GH---SLRGLFIIDREGIVRQITLNDLPV 201 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~--g~---~~p~~~lId~~G~v~~~~~~~~~~ 201 (247)
+|.++.. + ..+|++++|+++++++.||+..++. |. ..+.+|||| +|+|+++++...+.
T Consensus 81 ~~~~~~~----------~-~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~ 143 (155)
T cd03013 81 AWGKALG----------A-KDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPG 143 (155)
T ss_pred HHHHhhC----------C-CCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCCC
Confidence 9998651 1 1389999999999999999986653 32 468999999 69999999766553
No 26
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.92 E-value=3e-24 Score=172.56 Aligned_cols=151 Identities=22% Similarity=0.270 Sum_probs=122.4
Q ss_pred CCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-------- 126 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-------- 126 (247)
|+++|+|++ .+.+|+.++++++ +||++||+|| ++|||.|..+++.|.+++++|+++++++|+|+.|+
T Consensus 1 g~~~p~f~l---~~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~ 76 (171)
T cd02969 1 GSPAPDFSL---PDTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS 76 (171)
T ss_pred CCcCCCccc---cCCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence 678999999 4558999999999 8999999999 99999999999999999999998899999999875
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC-----C
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP-----V 201 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~-----~ 201 (247)
.+..+++.+.. +.+|+++.|+++.+.+.||+. ..|++||||++|+|++....... .
T Consensus 77 ~~~~~~~~~~~-------------~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~ 137 (171)
T cd02969 77 PENMKAKAKEH-------------GYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDP 137 (171)
T ss_pred HHHHHHHHHHC-------------CCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccc
Confidence 34555555532 568999999999999999998 78999999999999987522211 2
Q ss_pred CCCHHHHHHHHHhhhcccc------cCCccCCCC
Q psy15453 202 GRSVEETLRLVRAFQYTDE------HGEACPSGW 229 (247)
Q Consensus 202 ~~~~~~il~~l~~l~~~~~------~~~~~~~~~ 229 (247)
.....++.+.|+++..... .+.+|.-+|
T Consensus 138 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 171 (171)
T cd02969 138 PVTGRDLRAALDALLAGKPVPVPQTPSIGCSIKW 171 (171)
T ss_pred cccHHHHHHHHHHHHcCCCCCccccCCCCcccCC
Confidence 3456777888877665322 256777666
No 27
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.92 E-value=7.7e-24 Score=170.02 Aligned_cols=137 Identities=26% Similarity=0.427 Sum_probs=117.9
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh-HhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH-FTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~-~~~ 130 (247)
.+.+|+++|+|++ .+.+|+.+++++++||+++|+|| ++||++|+.+++.|++++++|++.++++++|+.|.. +..
T Consensus 34 ~~~~g~~~p~~~~---~~~~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~ 109 (173)
T PRK03147 34 KVQVGKEAPNFVL---TDLEGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAV 109 (173)
T ss_pred ccCCCCCCCCcEe---ecCCCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHH
Confidence 6788999999998 45599999999999999999999 999999999999999999999988899999999764 455
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
..|.+.. +.+|+++.|.++.+.+.||+. .+|++|+||++|+|++.+.|..+ .+++.+
T Consensus 110 ~~~~~~~-------------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~~~----~~~l~~ 166 (173)
T PRK03147 110 KNFVNRY-------------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGEMT----EEQLEE 166 (173)
T ss_pred HHHHHHh-------------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCCCC----HHHHHH
Confidence 6776643 578999999999999999998 88999999999999998866554 355555
Q ss_pred HHHhh
Q psy15453 211 LVRAF 215 (247)
Q Consensus 211 ~l~~l 215 (247)
.|+++
T Consensus 167 ~l~~~ 171 (173)
T PRK03147 167 YLEKI 171 (173)
T ss_pred HHHHh
Confidence 55554
No 28
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.91 E-value=7.4e-24 Score=174.23 Aligned_cols=145 Identities=14% Similarity=0.073 Sum_probs=107.7
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC-------
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV------- 124 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~------- 124 (247)
.-..|..+|+|++ .|.+|+.++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++||+|+.
T Consensus 12 ~~~~~~~~pdf~l---~d~~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e 87 (199)
T PTZ00056 12 KDELRKSIYDYTV---KTLEGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQE 87 (199)
T ss_pred chhcCCCCCceEE---ECCCCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCC
Confidence 4566789999999 45599999999999999999999 999999999999999999999999999999986
Q ss_pred -CChHhHHHHHHHhhccccccccCCCCCcceeEEecC------CchHHHH--------hCCcccCCCc-cceeEEEEcCC
Q psy15453 125 -DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL------THEISRD--------YGVYLEDKGH-SLRGLFIIDRE 188 (247)
Q Consensus 125 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~------~~~~~~~--------~~~~~~~~g~-~~p~~~lId~~ 188 (247)
|+.++.++|.+.+ +.+|+++.|. ...+.+. |+......++ ..|++||||++
T Consensus 88 ~d~~e~~~~f~~~~-------------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~ 154 (199)
T PTZ00056 88 FPNTKDIRKFNDKN-------------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKS 154 (199)
T ss_pred CCCHHHHHHHHHHc-------------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCC
Confidence 4556777777743 6799998752 1233322 2221100011 22479999999
Q ss_pred CcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 189 GIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 189 G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
|+|++.+.|..+ .+++.+.|+.+..
T Consensus 155 G~iv~~~~g~~~----~~~l~~~I~~ll~ 179 (199)
T PTZ00056 155 GNVVAYFSPRTE----PLELEKKIAELLG 179 (199)
T ss_pred CcEEEEeCCCCC----HHHHHHHHHHHHH
Confidence 999998866543 3445555555443
No 29
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.91 E-value=8.3e-24 Score=172.76 Aligned_cols=134 Identities=17% Similarity=0.169 Sum_probs=106.9
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcC--CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLT--DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~--~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.+.+|+++|+|++ .|.+|+.++++ +++||+++|+|| ++|||+|+.++|.++++++++ ++.+++|+.|+.++
T Consensus 45 ~~~vG~~aP~f~l---~d~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~~~~~ 117 (189)
T TIGR02661 45 GPDVGDAAPIFNL---PDFDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARAE---ETDVVMISDGTPAE 117 (189)
T ss_pred CCCCCCcCCCcEe---cCCCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHhc---CCcEEEEeCCCHHH
Confidence 4789999999999 45599999995 579999999999 999999999999999987653 78899999888888
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
..+|.+++ +++++.+. .++++.+.|++. .+|++|+||++|+|++. +..+..+.+++++
T Consensus 118 ~~~~~~~~-------------~~~~~~~~-~~~~i~~~y~v~------~~P~~~lID~~G~I~~~--g~~~~~~~le~ll 175 (189)
T TIGR02661 118 HRRFLKDH-------------ELGGERYV-VSAEIGMAFQVG------KIPYGVLLDQDGKIRAK--GLTNTREHLESLL 175 (189)
T ss_pred HHHHHHhc-------------CCCcceee-chhHHHHhccCC------ccceEEEECCCCeEEEc--cCCCCHHHHHHHH
Confidence 88888854 34444333 457899999998 88999999999999986 3333444455555
Q ss_pred HHHHh
Q psy15453 210 RLVRA 214 (247)
Q Consensus 210 ~~l~~ 214 (247)
+.+++
T Consensus 176 ~~l~~ 180 (189)
T TIGR02661 176 EADRE 180 (189)
T ss_pred HHHHc
Confidence 55433
No 30
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.91 E-value=5.8e-24 Score=166.27 Aligned_cols=124 Identities=23% Similarity=0.315 Sum_probs=106.5
Q ss_pred CCCCceeeeeecCCceeEEcCCCC-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHH
Q psy15453 58 PAPYWKGTAVVDGNIKEIKLTDYR-GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINS 136 (247)
Q Consensus 58 ~~P~f~l~~~~d~~G~~v~l~~~~-gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~ 136 (247)
.+|+|+++ |.+|+.+++++++ +|++||+||+++|||+|+.+++.|++++++++++|+++|+|+.|+.+....|.+.
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELP---DAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCcccc---CCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 47999994 4589999999986 5788888877999999999999999999999988999999999998777767664
Q ss_pred hhccccccccCCCCCcceeEEecCCchHHHHhCCcccC-----------------------CCccceeEEEEcCCCcEEE
Q psy15453 137 LKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED-----------------------KGHSLRGLFIIDREGIVRQ 193 (247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~-----------------------~g~~~p~~~lId~~G~v~~ 193 (247)
. +++|++++|+++.+.+.||+.... .+...|++||||++|+|++
T Consensus 78 ~-------------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~ 144 (149)
T cd02970 78 K-------------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF 144 (149)
T ss_pred c-------------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence 3 579999999999999999985322 2347899999999999999
Q ss_pred EEec
Q psy15453 194 ITLN 197 (247)
Q Consensus 194 ~~~~ 197 (247)
.+++
T Consensus 145 ~~~~ 148 (149)
T cd02970 145 AHVD 148 (149)
T ss_pred EecC
Confidence 9864
No 31
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.91 E-value=3.7e-24 Score=168.93 Aligned_cols=125 Identities=16% Similarity=0.186 Sum_probs=98.1
Q ss_pred CCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC--------ChHhH
Q psy15453 59 APYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD--------SHFTH 130 (247)
Q Consensus 59 ~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d--------~~~~~ 130 (247)
+|+|++ .|.+|++++|++++||++||+|| ++||| |+.++|.|++++++|+++|++||+|+.| +.+..
T Consensus 2 ~~~f~l---~d~~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSV---KDIDGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEE---ECCCCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 789998 55699999999999999999999 99999 9999999999999999889999999864 34667
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecC--Cch-HHHHhCCcccCC-------CccceeEEEEcCCCcEEEEEecCCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDL--THE-ISRDYGVYLEDK-------GHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~--~~~-~~~~~~~~~~~~-------g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
++|.++. . +++||++.|. ++. ..+.|+...... -...+++||||++|+|++.+.|..+
T Consensus 77 ~~f~~~~---------~---~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~ 144 (152)
T cd00340 77 KEFCETN---------Y---GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTD 144 (152)
T ss_pred HHHHHHh---------c---CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCC
Confidence 7777641 1 5789999864 232 456666421100 0012389999999999999987664
No 32
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.91 E-value=8.1e-24 Score=177.22 Aligned_cols=144 Identities=14% Similarity=0.192 Sum_probs=108.6
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC------
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD------ 125 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d------ 125 (247)
....|+.+|+|++ .|.+|+.+++++++||++||+|| ++||++|..++|.|++++++|+++|++||+|+.|
T Consensus 72 ~~~~g~~aPdF~l---~d~~G~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e 147 (236)
T PLN02399 72 RAATEKSVHDFTV---KDIDGKDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 147 (236)
T ss_pred chhcCCCCCceEE---ECCCCCEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccC
Confidence 3468999999999 45599999999999999999999 9999999999999999999999999999999964
Q ss_pred --ChHhHHHHHHHhhccccccccCCCCCcceeEEec--CCc-hHHHHhCCcccCC----C---ccceeEEEEcCCCcEEE
Q psy15453 126 --SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD--LTH-EISRDYGVYLEDK----G---HSLRGLFIIDREGIVRQ 193 (247)
Q Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D--~~~-~~~~~~~~~~~~~----g---~~~p~~~lId~~G~v~~ 193 (247)
+.++..+|..+ .. +.+||++.| .++ ...+.|++..... | ...|++||||++|+|++
T Consensus 148 ~~s~~ei~~f~~~---------~~---g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~ 215 (236)
T PLN02399 148 PGSNPEIKQFACT---------RF---KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE 215 (236)
T ss_pred CCCHHHHHHHHHH---------hc---CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE
Confidence 34455666521 11 578998854 333 4555554310000 0 14699999999999999
Q ss_pred EEecCCCCCCCHHHHHHHHHhh
Q psy15453 194 ITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 194 ~~~~~~~~~~~~~~il~~l~~l 215 (247)
++.|..+ .+++.+.|+.+
T Consensus 216 ~~~G~~~----~~~le~~I~~l 233 (236)
T PLN02399 216 RYPPTTS----PFQIEKDIQKL 233 (236)
T ss_pred EECCCCC----HHHHHHHHHHH
Confidence 9977653 34555555554
No 33
>PLN02412 probable glutathione peroxidase
Probab=99.91 E-value=9.1e-24 Score=169.26 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=104.7
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------hH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--------HF 128 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--------~~ 128 (247)
+.+|+|++ .|.+|+.++|++++||++||+|| ++|||+|+.++|.|++++++|+++|++||+|+.|+ .+
T Consensus 7 ~~~pdf~l---~d~~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTV---KDIGGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEE---ECCCCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 77999999 45599999999999999999999 99999999999999999999999999999999753 33
Q ss_pred hHHHH-HHHhhccccccccCCCCCcceeEEec--CC-chHHHHhCCcccCC------Cc-cceeEEEEcCCCcEEEEEec
Q psy15453 129 THRAW-INSLKKDNSLKKDNRLDKLKIPLLSD--LT-HEISRDYGVYLEDK------GH-SLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 129 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D--~~-~~~~~~~~~~~~~~------g~-~~p~~~lId~~G~v~~~~~~ 197 (247)
...++ .++ + +.+||++.| .+ ....+.|++...+. ++ ..|++||||++|+|++.+.|
T Consensus 83 ~~~~~~~~~----------~---~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g 149 (167)
T PLN02412 83 EIQQTVCTR----------F---KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP 149 (167)
T ss_pred HHHHHHHHc----------c---CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC
Confidence 33332 342 2 578999874 44 36666665322110 11 46999999999999999977
Q ss_pred CCCCCCCHHHHHHHHHhh
Q psy15453 198 DLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 198 ~~~~~~~~~~il~~l~~l 215 (247)
..+ .+++.+.|+.+
T Consensus 150 ~~~----~~~l~~~i~~~ 163 (167)
T PLN02412 150 TTS----PLKIEKDIQNL 163 (167)
T ss_pred CCC----HHHHHHHHHHH
Confidence 664 24444555444
No 34
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.91 E-value=9.1e-24 Score=161.47 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=95.8
Q ss_pred ceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC------CChHhHHHHHHHhhccccccc
Q psy15453 72 IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV------DSHFTHRAWINSLKKDNSLKK 145 (247)
Q Consensus 72 G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~------d~~~~~~~~~~~~~~~~~~~~ 145 (247)
|+++++++++||++||+|| ++|||+|+.++|.|++++++|+++++.+|+|+. ++.+..++|.+++
T Consensus 13 ~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~-------- 83 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY-------- 83 (126)
T ss_pred CCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc--------
Confidence 5789999999999999999 999999999999999999999988999999986 3455666666643
Q ss_pred cCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecC
Q psy15453 146 DNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 146 ~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~ 198 (247)
+++|+++.|+++.+.+.|++. .+|++||||++|+|++.+.|+
T Consensus 84 -----~~~~p~~~D~~~~~~~~~~v~------~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 84 -----GITYPVANDNDYATWRAYGNQ------YWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred -----CCCCCEEECCchHHHHHhCCC------cCCeEEEECCCCcEEEEEecC
Confidence 678999999999999999998 889999999999999998764
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.90 E-value=3.3e-23 Score=163.65 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=102.4
Q ss_pred CCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC--------CChHhHH
Q psy15453 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--------DSHFTHR 131 (247)
Q Consensus 60 P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--------d~~~~~~ 131 (247)
-+|++ .|.+|++++|++++||++||+|| ++|||+|..++|.|++++++|+++|+.|++|+. |+.+.++
T Consensus 3 ~~f~l---~~~~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 3 YSFEV---KDARGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred cccee---ECCCCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence 47887 56699999999999999999999 999999999999999999999998999999984 5567788
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecC---CchHHHHhCCcccCCCcccee----EEEEcCCCcEEEEEecCCCCCCC
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDL---THEISRDYGVYLEDKGHSLRG----LFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~~~~~~~~g~~~p~----~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
+|.++. + +.+||+++|. +......|+...... -..|+ +||||++|+|++.+.+..+
T Consensus 79 ~f~~~~---------~---~~~fp~~~d~~~~~~~~~~~~~~~~~~~-~~~p~~~~~tflID~~G~v~~~~~g~~~---- 141 (153)
T TIGR02540 79 SFARRN---------Y---GVTFPMFSKIKILGSEAEPAFRFLVDSS-KKEPRWNFWKYLVNPEGQVVKFWRPEEP---- 141 (153)
T ss_pred HHHHHh---------c---CCCCCccceEecCCCCCCcHHHHHHhcC-CCCCCCccEEEEEcCCCcEEEEECCCCC----
Confidence 887641 1 5789998772 223333333221110 03566 9999999999999966653
Q ss_pred HHHHHHHHHhh
Q psy15453 205 VEETLRLVRAF 215 (247)
Q Consensus 205 ~~~il~~l~~l 215 (247)
.+++.+.|+.+
T Consensus 142 ~~~l~~~i~~l 152 (153)
T TIGR02540 142 VEEIRPEITAL 152 (153)
T ss_pred HHHHHHHHHHh
Confidence 45666666554
No 36
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.90 E-value=3.7e-23 Score=168.13 Aligned_cols=129 Identities=14% Similarity=0.212 Sum_probs=94.4
Q ss_pred CCCCCCceeeeeecCCceeEEcCCCCCCeE-EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDYRGKYL-VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-------- 126 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~~gk~v-vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-------- 126 (247)
+..+|+|++ .|.+|+.++|++++||++ |+.+| ++|||+|+.++|.|++++++|+++|+.||+|+.|.
T Consensus 17 ~~~~p~f~l---~d~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~ 92 (183)
T PTZ00256 17 TKSFFEFEA---IDIDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD 92 (183)
T ss_pred CCcccceEe---EcCCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence 577999999 455999999999999965 45668 99999999999999999999999999999999652
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEec--CCchH-HHHhCCcccCC--------Cc-cce---eEEEEcCCCcE
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD--LTHEI-SRDYGVYLEDK--------GH-SLR---GLFIIDREGIV 191 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D--~~~~~-~~~~~~~~~~~--------g~-~~p---~~~lId~~G~v 191 (247)
.+...+|..+ .+ +++||++.| .++.. .+.|+...+.. +. .+| ++||||++|+|
T Consensus 93 ~~~~~~f~~~---------~~---~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~I 160 (183)
T PTZ00256 93 EPEIKEYVQK---------KF---NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKV 160 (183)
T ss_pred HHHHHHHHHH---------hc---CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCE
Confidence 2444555432 11 578999865 44332 34442111100 11 557 47999999999
Q ss_pred EEEEecCCC
Q psy15453 192 RQITLNDLP 200 (247)
Q Consensus 192 ~~~~~~~~~ 200 (247)
++.+.|..+
T Consensus 161 v~~~~g~~~ 169 (183)
T PTZ00256 161 VKYFSPKVN 169 (183)
T ss_pred EEEECCCCC
Confidence 999977654
No 37
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.89 E-value=2.7e-22 Score=161.67 Aligned_cols=132 Identities=21% Similarity=0.284 Sum_probs=104.4
Q ss_pred ccccCCCCCCceeeeeecCCce--eEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC-h
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIK--EIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS-H 127 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~--~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~-~ 127 (247)
...+|.++|+|++++. +|+ .++++++ +||+++|+|| ++|||+|+.++|.++++++ +++++++|+.+. .
T Consensus 33 ~~~vG~~ap~f~l~~~---~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 33 SALIGKPVPAFPLAAL---REPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQS 104 (173)
T ss_pred chhcCCCCCCcccccc---CCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCCh
Confidence 3568999999999554 665 5666676 7999999999 9999999999999987753 479999999754 4
Q ss_pred HhHHHHHHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
++..+|.++. +.+|+ ++.|+++.+.+.|++. .+|++|+||++|+|++.+.|..+ .+
T Consensus 105 ~~~~~~~~~~-------------~~~f~~v~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~~----~~ 161 (173)
T TIGR00385 105 QNALKFLKEL-------------GNPYQAILIDPNGKLGLDLGVY------GAPETFLVDGNGVILYRHAGPLN----NE 161 (173)
T ss_pred HHHHHHHHHc-------------CCCCceEEECCCCchHHhcCCe------eCCeEEEEcCCceEEEEEeccCC----HH
Confidence 4556676643 56786 5679999999999998 88999999999999999877654 34
Q ss_pred HHHHHHHh
Q psy15453 207 ETLRLVRA 214 (247)
Q Consensus 207 ~il~~l~~ 214 (247)
++.+.|++
T Consensus 162 ~l~~~l~~ 169 (173)
T TIGR00385 162 VWTEGFLP 169 (173)
T ss_pred HHHHHHHH
Confidence 44444443
No 38
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.88 E-value=3.2e-22 Score=152.86 Aligned_cols=118 Identities=24% Similarity=0.348 Sum_probs=100.5
Q ss_pred CCCCCceeeeeecCCc--eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC-CChHhHHHH
Q psy15453 57 KPAPYWKGTAVVDGNI--KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV-DSHFTHRAW 133 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G--~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~-d~~~~~~~~ 133 (247)
.++|+|+++++ +| +.+++++++||++||.|| ++|||+|+.++|.|+++++++ +++|++|+. ++.+..++|
T Consensus 1 ~~~p~f~~~~~---~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~ 73 (127)
T cd03010 1 KPAPAFSLPAL---PGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAW 73 (127)
T ss_pred CCCCCcccccc---cCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHH
Confidence 36899999654 66 889999999999999999 999999999999999998765 599999996 556677777
Q ss_pred HHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
.+.. +..|+ ++.|.++.+.+.|++. .+|++|+||++|+|++.+.|..+
T Consensus 74 ~~~~-------------~~~~~~~~~D~~~~~~~~~~v~------~~P~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 74 LARH-------------GNPYAAVGFDPDGRVGIDLGVY------GVPETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred HHhc-------------CCCCceEEECCcchHHHhcCCC------CCCeEEEECCCceEEEEEeccCC
Confidence 7643 45664 6689999999999999 89999999999999999877665
No 39
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.88 E-value=9.5e-22 Score=158.46 Aligned_cols=144 Identities=15% Similarity=0.167 Sum_probs=108.4
Q ss_pred ccccCCCCCCceeee----eecC---CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEE-----
Q psy15453 52 NAVVMKPAPYWKGTA----VVDG---NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEV----- 119 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~----~~d~---~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~v----- 119 (247)
.+.+|+++|...+.+ +.++ +.+.++.++++||+.||+|| |+||++|+.++|.|.++ +++|+.+
T Consensus 22 ~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 22 NLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 466777777776521 0111 34567888999999999999 99999999999999999 5558888
Q ss_pred -EEEeCCCh-HhHHHHHHHhhccccccccCCCCCccee---EEecCCchHHHHhCCcccCCCccceeE-EEEcCCCcEEE
Q psy15453 120 -VGVSVDSH-FTHRAWINSLKKDNSLKKDNRLDKLKIP---LLSDLTHEISRDYGVYLEDKGHSLRGL-FIIDREGIVRQ 193 (247)
Q Consensus 120 -l~Vs~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~D~~~~~~~~~~~~~~~~g~~~p~~-~lId~~G~v~~ 193 (247)
++||.|+. .....|.+.+.+ .. +..|| ++.|.++.+...||+. .+|.+ ||||++|+|++
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie------~~---~~~~P~~~vllD~~g~v~~~~gv~------~~P~T~fVIDk~GkVv~ 161 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAK------KG---KKENPWSQVVLDDKGAVKNAWQLN------SEDSAIIVLDKTGKVKF 161 (184)
T ss_pred eEEEECccchhhHHHHHHHHHH------Hh---cccCCcceEEECCcchHHHhcCCC------CCCceEEEECCCCcEEE
Confidence 99998863 344445443322 22 23555 8999999999999999 88888 89999999999
Q ss_pred EEecCCCCCCCHHHHHHHHHhhh
Q psy15453 194 ITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 194 ~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.+.|..+.+ .+++++..|+++.
T Consensus 162 ~~~G~l~~e-e~e~~~~li~~ll 183 (184)
T TIGR01626 162 VKEGALSDS-DIQTVISLVNGLL 183 (184)
T ss_pred EEeCCCCHH-HHHHHHHHHHHHh
Confidence 998887644 3566777776653
No 40
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.88 E-value=2.8e-21 Score=177.64 Aligned_cols=133 Identities=19% Similarity=0.291 Sum_probs=108.7
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC------
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS------ 126 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~------ 126 (247)
...++++|+|++ .|.+|+.++++ +||++||+|| |+||++|+.++|.|++++++++..+++||+|+.+.
T Consensus 32 ~~~~~~lP~f~l---~D~dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~ 105 (521)
T PRK14018 32 ATVPHTLSTLKT---ADNRPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK 105 (521)
T ss_pred ccccCCCCCeEe---ecCCCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence 667789999998 67799999998 8999999999 99999999999999999999987789999998632
Q ss_pred hHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHH
Q psy15453 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206 (247)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~ 206 (247)
.++..+|.+.. + -.+++++.|.+..+.+.|++. .+|+++|||++|+|++.+.|..+ .+
T Consensus 106 ~~~~~~~~~~~----------~--y~~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~~----~e 163 (521)
T PRK14018 106 DGDFQKWYAGL----------D--YPKLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSIS----EA 163 (521)
T ss_pred HHHHHHHHHhC----------C--CcccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCCC----HH
Confidence 22233333321 1 136799999999999999999 89999999999999999988765 34
Q ss_pred HHHHHHH
Q psy15453 207 ETLRLVR 213 (247)
Q Consensus 207 ~il~~l~ 213 (247)
++.+.|+
T Consensus 164 eL~a~Ie 170 (521)
T PRK14018 164 QALALIR 170 (521)
T ss_pred HHHHHHH
Confidence 4444444
No 41
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.87 E-value=1.7e-22 Score=157.49 Aligned_cols=102 Identities=16% Similarity=0.252 Sum_probs=83.4
Q ss_pred eeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-------CcEEEEEeCCChH-hHHHHHHHhhcccccc
Q psy15453 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-------GAEVVGVSVDSHF-THRAWINSLKKDNSLK 144 (247)
Q Consensus 73 ~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-------~~~vl~Vs~d~~~-~~~~~~~~~~~~~~~~ 144 (247)
+.+++++++||+++|+|| |+|||+|+.++|.|++++++++++ ++++|+||.|..+ ..++|.++.
T Consensus 16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------- 87 (146)
T cd03008 16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------- 87 (146)
T ss_pred ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence 467889999999999999 999999999999999999988753 6999999998643 356666632
Q ss_pred ccCCCCCcce---eEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 145 KDNRLDKLKI---PLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 145 ~~~~~~~~~~---~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
+.+| ++..+.+..+.+.|++. .+|++||||++|+|+..
T Consensus 88 ------~~~~~~~p~~~~~~~~l~~~y~v~------~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 88 ------PKKWLFLPFEDEFRRELEAQFSVE------ELPTVVVLKPDGDVLAA 128 (146)
T ss_pred ------CCCceeecccchHHHHHHHHcCCC------CCCEEEEECCCCcEEee
Confidence 3344 33333346899999998 89999999999999976
No 42
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.87 E-value=1.5e-21 Score=151.65 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=101.5
Q ss_pred CCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHHhcC---cEEEEEeCCC----hHh
Q psy15453 58 PAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFV-CPTEVLALNEKIDEFHKIG---AEVVGVSVDS----HFT 129 (247)
Q Consensus 58 ~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~-C~~~~~~l~~l~~~~~~~~---~~vl~Vs~d~----~~~ 129 (247)
.+|+|++ .|.+|+.+++++++||++||+|| ++||+. |..+++.|+++++++++++ +++++||.|+ ++.
T Consensus 1 ~~p~f~l---~~~~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTL---TDQDGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEE---EcCCCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 4799998 56699999999999999999999 999997 9999999999999998764 9999999865 356
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCC---chHHHHhCCcccCC-------Cc-cceeEEEEcCCCcEEEEE
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLEDK-------GH-SLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~~-------g~-~~p~~~lId~~G~v~~~~ 195 (247)
.++|.+++ +.+|+++.|+. +.+.+.||+..... ++ +.|.+||||++|+|++++
T Consensus 77 ~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 77 LKAYAKAF-------------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHh-------------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 66676643 46899999875 78999999875432 11 357899999999999987
No 43
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.87 E-value=1.9e-21 Score=145.55 Aligned_cols=110 Identities=16% Similarity=0.233 Sum_probs=93.6
Q ss_pred CCceeeeeecCCceeEEcCCCC-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhh
Q psy15453 60 PYWKGTAVVDGNIKEIKLTDYR-GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLK 138 (247)
Q Consensus 60 P~f~l~~~~d~~G~~v~l~~~~-gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~ 138 (247)
|+|++ .+.+|+.+++++++ ||++||+|| ++||++|+.++|.++++++++++ ++.+++|+.+..++.+++.+.+
T Consensus 1 p~f~l---~~~~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~- 74 (114)
T cd02967 1 PTFDL---TTIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKH- 74 (114)
T ss_pred CCcee---ecCCCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHh-
Confidence 78998 45599999999997 999999999 99999999999999999988854 6888988877777778888754
Q ss_pred ccccccccCCCCCc-ceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 139 KDNSLKKDNRLDKL-KIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 139 ~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+. .+|++.+ ..+.+.|++. .+|++||||++|+|++..
T Consensus 75 ------------~~~~~p~~~~--~~~~~~~~~~------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 75 ------------GLEAFPYVLS--AELGMAYQVS------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred ------------CCCCCcEEec--HHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence 33 4777763 5688999998 899999999999999863
No 44
>KOG0855|consensus
Probab=99.85 E-value=1.6e-20 Score=145.03 Aligned_cols=149 Identities=29% Similarity=0.441 Sum_probs=132.9
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
...+.+|+.+|||+| .|++|+.++|.++.|+ ++|++|+|+...|.|.++...+...|+++++.+.+|+++|.|+..
T Consensus 60 s~~v~~Gd~iPD~tL---~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~ 136 (211)
T KOG0855|consen 60 SLKVNKGDAIPDFTL---KDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSA 136 (211)
T ss_pred ceeeecCCcCCCccc---ccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchH
Confidence 346899999999999 7889999999999875 999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-CccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-GHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
++++|..+. +++|++|+|+.+++.+.+|+.-... |+..+.+||+|++|....+.........++++
T Consensus 137 sqKaF~sKq-------------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~ 203 (211)
T KOG0855|consen 137 SQKAFASKQ-------------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDE 203 (211)
T ss_pred HHHHhhhhc-------------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHH
Confidence 999998864 7899999999999999999985433 56788999999988777777677778888999
Q ss_pred HHHHHHh
Q psy15453 208 TLRLVRA 214 (247)
Q Consensus 208 il~~l~~ 214 (247)
.++.|.+
T Consensus 204 a~k~~~~ 210 (211)
T KOG0855|consen 204 ALKFLKA 210 (211)
T ss_pred HHHHHhc
Confidence 8888764
No 45
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.84 E-value=5.3e-20 Score=136.19 Aligned_cols=113 Identities=30% Similarity=0.515 Sum_probs=101.0
Q ss_pred CceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--hHhHHHHHHHhh
Q psy15453 61 YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--HFTHRAWINSLK 138 (247)
Q Consensus 61 ~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--~~~~~~~~~~~~ 138 (247)
+|++ .+.+|+.+++++++||+++|.|| ++||++|+..++.|.++++++++.++.+++|+.|+ .+..+.+.+.+
T Consensus 1 ~~~~---~~~~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~- 75 (116)
T cd02966 1 DFSL---PDLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY- 75 (116)
T ss_pred Cccc---cCCCCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence 4566 45589999999999999999999 99999999999999999999987789999999998 67778877753
Q ss_pred ccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEe
Q psy15453 139 KDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITL 196 (247)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~ 196 (247)
+.+|+++.|....+.+.|++. .+|+++|+|++|+|++.+.
T Consensus 76 ------------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 76 ------------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARHV 115 (116)
T ss_pred ------------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEec
Confidence 479999999999999999998 8899999999999998864
No 46
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.84 E-value=6.5e-20 Score=147.07 Aligned_cols=121 Identities=10% Similarity=0.130 Sum_probs=95.2
Q ss_pred cccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHH
Q psy15453 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132 (247)
Q Consensus 53 ~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~ 132 (247)
..+..+.|+|++ . +|+.+++++++ ||+|| ++|||+|++++|.|++++++| +++|++|+.|...
T Consensus 49 ~~~~~~~~~f~l---~--dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~---- 111 (181)
T PRK13728 49 RTEKPAPRWFRL---S--NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG---- 111 (181)
T ss_pred ccCCCCCCccCC---C--CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC----
Confidence 456678899997 2 88999999997 78899 999999999999999999997 6999999987521
Q ss_pred HHHHhhccccccccCCCCCcceeEEec-CCchHHHHhCCcccCCCccceeEEEEcCCCcEEE-EEecCCCCCCCHHHHHH
Q psy15453 133 WINSLKKDNSLKKDNRLDKLKIPLLSD-LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQ-ITLNDLPVGRSVEETLR 210 (247)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~l~D-~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~-~~~~~~~~~~~~~~il~ 210 (247)
...||.+.| .+..+.+.||.... .+|++||||++|++++ ++.|..+ .+++.+
T Consensus 112 ------------------~~~fPv~~dd~~~~~~~~~g~~~~----~iPttfLId~~G~i~~~~~~G~~~----~~~L~~ 165 (181)
T PRK13728 112 ------------------DTAFPEALPAPPDVMQTFFPNIPV----ATPTTFLVNVNTLEALPLLQGATD----AAGFMA 165 (181)
T ss_pred ------------------CCCCceEecCchhHHHHHhCCCCC----CCCeEEEEeCCCcEEEEEEECCCC----HHHHHH
Confidence 258999985 56678888985211 7899999999999974 6777665 334444
Q ss_pred HHHhhh
Q psy15453 211 LVRAFQ 216 (247)
Q Consensus 211 ~l~~l~ 216 (247)
.++.+.
T Consensus 166 ~I~~ll 171 (181)
T PRK13728 166 RMDTVL 171 (181)
T ss_pred HHHHHH
Confidence 454443
No 47
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.82 E-value=7.4e-20 Score=182.18 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=111.7
Q ss_pred ccccCCCCCCceeeeeecCCceeEEc-CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC---CCh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKL-TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV---DSH 127 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l-~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~---d~~ 127 (247)
....|.++|+|..... +.+|+++++ ++++||++||+|| |+||++|+.++|.|++++++|++++++||+|+. |..
T Consensus 390 ~~~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~ 467 (1057)
T PLN02919 390 SKKTATKVPEFPPKLD-WLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE 467 (1057)
T ss_pred ccccCCcCCCCccccc-ccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc
Confidence 4567999999997541 247889998 5899999999999 999999999999999999999988899999974 332
Q ss_pred HhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHH
Q psy15453 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEE 207 (247)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~ 207 (247)
++.+++.+... +. +++|+++.|.+..+.+.|++. .+|+++|||++|+|++.+.|+.. .++
T Consensus 468 ~~~~~~~~~~~-------~~---~i~~pvv~D~~~~~~~~~~V~------~iPt~ilid~~G~iv~~~~G~~~----~~~ 527 (1057)
T PLN02919 468 KDLEAIRNAVL-------RY---NISHPVVNDGDMYLWRELGVS------SWPTFAVVSPNGKLIAQLSGEGH----RKD 527 (1057)
T ss_pred ccHHHHHHHHH-------Hh---CCCccEEECCchHHHHhcCCC------ccceEEEECCCCeEEEEEecccC----HHH
Confidence 22333322221 12 679999999999999999998 89999999999999999877543 244
Q ss_pred HHHHHHhh
Q psy15453 208 TLRLVRAF 215 (247)
Q Consensus 208 il~~l~~l 215 (247)
+.+.|+.+
T Consensus 528 l~~~l~~~ 535 (1057)
T PLN02919 528 LDDLVEAA 535 (1057)
T ss_pred HHHHHHHH
Confidence 44444443
No 48
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.81 E-value=3.1e-19 Score=144.45 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=99.3
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC--------ChH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD--------SHF 128 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d--------~~~ 128 (247)
..+++|++. |.+|+.++|++|+||++||+|| |+||+.|. +++.|++++++|+++|++||+|+.+ +.+
T Consensus 3 ~~~~~f~~~---~~~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVT---TIDGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeE---CCCCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 358899984 5599999999999999999999 99999995 8999999999999999999999873 456
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecC--C----chHHHHhCCccc----C--CC------------------cc
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDL--T----HEISRDYGVYLE----D--KG------------------HS 178 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~--~----~~~~~~~~~~~~----~--~g------------------~~ 178 (247)
+.++|.+. .. +.+||++.+- + ..+.+-+.-... . .+ ..
T Consensus 78 ei~~f~~~---------~~---g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~W 145 (183)
T PRK10606 78 EIKTYCRT---------TW---GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILW 145 (183)
T ss_pred HHHHHHHH---------cc---CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccc
Confidence 67777752 11 5789999443 3 123332211000 0 00 01
Q ss_pred ceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 179 LRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 179 ~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.=+-||||++|++++++.. ...+...++.+.|+.+.
T Consensus 146 NF~KFLv~~~G~vv~r~~~--~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 146 NFEKFLVGRDGQVIQRFSP--DMTPEDPIVMESIKLAL 181 (183)
T ss_pred cCEEEEECCCCcEEEEECC--CCCCCHHHHHHHHHHHh
Confidence 2247999999999999832 23334455666666553
No 49
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.81 E-value=2.9e-19 Score=135.48 Aligned_cols=112 Identities=20% Similarity=0.326 Sum_probs=96.1
Q ss_pred CCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--hHhHHHHHHHh
Q psy15453 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--HFTHRAWINSL 137 (247)
Q Consensus 60 P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--~~~~~~~~~~~ 137 (247)
|+|++ ++.+|+.+++++++||+++|+|| ++||++|+.++|.|++++++ +.+++|+.|+ .+...+|.+++
T Consensus 1 p~f~l---~~~~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTA---TTLDGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCcee---ecCCCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 78998 45599999999999999999999 99999999999999999866 5677887654 56667777743
Q ss_pred hccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 138 KKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
+.+|+++.|.++.+.+.|++. .+|+++|||++| |++.+.|..+
T Consensus 72 -------------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~g~~~ 114 (123)
T cd03011 72 -------------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTTGVTS 114 (123)
T ss_pred -------------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEeccCC
Confidence 568999999999999999998 899999999999 9988866544
No 50
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.81 E-value=1.9e-19 Score=138.63 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=85.2
Q ss_pred ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCCh-HhHHHHHHHhhcccccc
Q psy15453 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSH-FTHRAWINSLKKDNSLK 144 (247)
Q Consensus 68 ~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~-~~~~~~~~~~~~~~~~~ 144 (247)
+|++ +++++++++||++||+|| ++||++|+.++|.|++++++++++ ++++++|+.|.. ++..+|.+++
T Consensus 4 ~~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~------- 74 (132)
T cd02964 4 LDGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM------- 74 (132)
T ss_pred ccCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------
Confidence 4666 699999999999999999 999999999999999999999865 799999999864 3455555532
Q ss_pred ccCCCCCcceeEE--ec--CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 145 KDNRLDKLKIPLL--SD--LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 145 ~~~~~~~~~~~~l--~D--~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+ .|..+ .| ....+.+.|++. .+|+++|||++|+|++..
T Consensus 75 ------~-~~~~~~~~d~~~~~~~~~~~~v~------~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 75 ------P-PWLAVPFEDEELRELLEKQFKVE------GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred ------C-CeEeeccCcHHHHHHHHHHcCCC------CCCEEEEECCCCCEEchh
Confidence 2 33332 22 125678889998 899999999999999764
No 51
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.81 E-value=9.2e-20 Score=140.03 Aligned_cols=110 Identities=17% Similarity=0.293 Sum_probs=86.7
Q ss_pred ecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccc
Q psy15453 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKK 145 (247)
Q Consensus 68 ~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~ 145 (247)
.|.+|+.+++++++||++||+|| ++||++|+.++|.|++++++++++ ++++++|+.|... +.+.+....
T Consensus 4 ~~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~------ 74 (131)
T cd03009 4 LRNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--ESFNDYFSK------ 74 (131)
T ss_pred cccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHc------
Confidence 56799999999999999999999 999999999999999999999864 7999999998753 333333221
Q ss_pred cCCCCCcceeEE-ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 146 DNRLDKLKIPLL-SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 146 ~~~~~~~~~~~l-~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
.+. ..+++. .|....+.+.|++. .+|+++|||++|+|+...
T Consensus 75 -~~~--~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 75 -MPW--LAVPFSDRERRSRLNRTFKIE------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred -CCe--eEcccCCHHHHHHHHHHcCCC------CCCEEEEECCCCCEEccc
Confidence 111 122222 23446899999998 899999999999999764
No 52
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=9.5e-18 Score=128.04 Aligned_cols=140 Identities=26% Similarity=0.454 Sum_probs=122.5
Q ss_pred cccCCCCcccccccccccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc
Q psy15453 36 SFTDSPTKFDHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115 (247)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~ 115 (247)
+|.+++.+ .....+++|+++|+|++ ++.+.+.++++++.||..+|+.+|+-..|+|..+...+++...++.
T Consensus 5 tfkgnpv~----l~g~~~~vGd~ap~ftl---~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-- 75 (158)
T COG2077 5 TFKGNPVT----LKGNEPQVGDKAPDFTL---VGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-- 75 (158)
T ss_pred EeCCCeEE----ecCCCCccCCcCCceEE---EcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--
Confidence 45555554 66677999999999999 6779999999999999999999999999999999999999998886
Q ss_pred CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC-chHHHHhCCcccCC---CccceeEEEEcCCCcE
Q psy15453 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT-HEISRDYGVYLEDK---GHSLRGLFIIDREGIV 191 (247)
Q Consensus 116 ~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-~~~~~~~~~~~~~~---g~~~p~~~lId~~G~v 191 (247)
+..|+.||.|-|..+++|..+ +|++ +...++|.. ..+.++||+.+.+. |+.-++.|++|.+|+|
T Consensus 76 ~~~Vl~IS~DLPFAq~RfC~a----------eGi~--nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V 143 (158)
T COG2077 76 NTVVLCISMDLPFAQKRFCGA----------EGIE--NVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKV 143 (158)
T ss_pred CcEEEEEeCCChhHHhhhhhh----------cCcc--cceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcE
Confidence 699999999999999999995 4442 477888875 67999999998876 6778999999999999
Q ss_pred EEEEe
Q psy15453 192 RQITL 196 (247)
Q Consensus 192 ~~~~~ 196 (247)
.|..+
T Consensus 144 ~y~el 148 (158)
T COG2077 144 TYSEL 148 (158)
T ss_pred EEEEc
Confidence 99874
No 53
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.73 E-value=8.5e-18 Score=121.78 Aligned_cols=91 Identities=26% Similarity=0.470 Sum_probs=70.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
||+++|+|| ++||++|++++|.|.+++++|+ +.++++|+||.|.. ..+|.+..++ . +.+|..+...
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~--~~~~~~~~~~-------~---~~~~~~~~~~ 67 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED--EEEWKKFLKK-------N---NFPWYNVPFD 67 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS--HHHHHHHHHT-------C---TTSSEEEETT
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC--HHHHHHHHHh-------c---CCCceEEeeC
Confidence 799999999 9999999999999999999999 66899999999863 3344443322 2 2345444333
Q ss_pred ---CchHHHHhCCcccCCCccceeEEEEcCCCcE
Q psy15453 161 ---THEISRDYGVYLEDKGHSLRGLFIIDREGIV 191 (247)
Q Consensus 161 ---~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v 191 (247)
...+.+.|++. .+|+++|+|++|+|
T Consensus 68 ~~~~~~l~~~~~i~------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 68 DDNNSELLKKYGIN------GIPTLVLLDPDGKI 95 (95)
T ss_dssp THHHHHHHHHTT-T------SSSEEEEEETTSBE
T ss_pred cchHHHHHHHCCCC------cCCEEEEECCCCCC
Confidence 47899999999 89999999999987
No 54
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.72 E-value=6.1e-17 Score=130.51 Aligned_cols=132 Identities=23% Similarity=0.345 Sum_probs=94.7
Q ss_pred cCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHH
Q psy15453 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHR 131 (247)
Q Consensus 55 ~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~ 131 (247)
.....|+|+| +|++|+++++++++||++||+|. .+.|| .|+..+..|.++++++.+. .+++|.||.|+..+..
T Consensus 28 ~~~~~~~f~L---~d~~G~~~~~~~~~Gk~~lv~F~-yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTL---TDQDGKTVTLDDLKGKWVLVFFG-YTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTP 103 (174)
T ss_dssp TSCSSST-EE---EETTSSEEEGGGGTTSEEEEEEE--TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-H
T ss_pred CCccCCCcEE---EcCCCCEecHHHhCCCeEEEEEE-EcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCH
Confidence 4567889999 78899999999999999999999 77775 8999999999999999853 6999999998754444
Q ss_pred HHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-------C---ccceeEEEEcCCCcEEEEEe
Q psy15453 132 AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-------G---HSLRGLFIIDREGIVRQITL 196 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-------g---~~~p~~~lId~~G~v~~~~~ 196 (247)
+-.+++.+ ..+.+...|....+.-..+.+.|++..... + .+...+|||||+|+|+..+.
T Consensus 104 ~~L~~Y~~------~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 104 EVLKKYAK------KFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHH------CHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHH------hcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 43443332 333222233332222367888898775321 1 25678999999999999874
No 55
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.71 E-value=1.8e-16 Score=124.87 Aligned_cols=94 Identities=17% Similarity=0.194 Sum_probs=68.3
Q ss_pred CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCC
Q psy15453 71 NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLD 150 (247)
Q Consensus 71 ~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (247)
.|+.+++++ +.||+|| ++|||+|++++|.|++++++| ++.|++|+.|....
T Consensus 43 ~G~~~~l~~----~~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~--------------------- 93 (153)
T TIGR02738 43 QGRHANQDD----YALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL--------------------- 93 (153)
T ss_pred cchhhhcCC----CEEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc---------------------
Confidence 466666654 4599999 999999999999999999887 68999999886320
Q ss_pred CcceeEEecCCchHH-HHh---CCcccCCCccceeEEEEcCCCcEE-EEEecCCC
Q psy15453 151 KLKIPLLSDLTHEIS-RDY---GVYLEDKGHSLRGLFIIDREGIVR-QITLNDLP 200 (247)
Q Consensus 151 ~~~~~~l~D~~~~~~-~~~---~~~~~~~g~~~p~~~lId~~G~v~-~~~~~~~~ 200 (247)
..|+...|.+.... +.| ++. .+|++|+||++|+++ .++.|..+
T Consensus 94 -~~fp~~~~~~~~~~~~~~~~~~v~------~iPTt~LID~~G~~i~~~~~G~~s 141 (153)
T TIGR02738 94 -TGFPDPLPATPEVMQTFFPNPRPV------VTPATFLVNVNTRKAYPVLQGAVD 141 (153)
T ss_pred -cccccccCCchHHHHHHhccCCCC------CCCeEEEEeCCCCEEEEEeecccC
Confidence 13344444333333 445 565 889999999998864 46667554
No 56
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.66 E-value=5.7e-15 Score=122.04 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=109.6
Q ss_pred CceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHH---hcCcEEEEEeCCChHhHHHHHHH
Q psy15453 61 YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFH---KIGAEVVGVSVDSHFTHRAWINS 136 (247)
Q Consensus 61 ~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~---~~~~~vl~Vs~d~~~~~~~~~~~ 136 (247)
+|++ +|++|+.+++.+++||+++|+|. .|.|| +|+.++..|.++++++. ..+++++.||.|+..+..+..++
T Consensus 49 ~f~l---~d~~G~~~~~~~l~Gk~~lv~Fg-yT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~ 124 (207)
T COG1999 49 DFEL---TDQDGKPFTLKDLKGKPSLVFFG-YTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKK 124 (207)
T ss_pred ceee---ecCCCCEeeccccCCCEEEEEee-cCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHH
Confidence 7998 88999999999999999999999 77776 89999999999999988 45688999999998777777776
Q ss_pred hhccccccccCCCCCcceeEEecCC---chHHHHhCCcccC---CC------ccceeEEEEcCCCcEEEEEecCCCCCCC
Q psy15453 137 LKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLED---KG------HSLRGLFIIDREGIVRQITLNDLPVGRS 204 (247)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~---~g------~~~p~~~lId~~G~v~~~~~~~~~~~~~ 204 (247)
+.. ++. ...|..+++.. .++.+.|++...+ .+ .+...+|+||++|+++..+.+..+
T Consensus 125 Y~~-------~~~-~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~---- 192 (207)
T COG1999 125 YAE-------LNF-DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEP---- 192 (207)
T ss_pred Hhc-------ccC-CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCC----
Confidence 532 111 34677777643 6788999988421 11 245679999999999998844433
Q ss_pred HHHHHHHHHhhh
Q psy15453 205 VEETLRLVRAFQ 216 (247)
Q Consensus 205 ~~~il~~l~~l~ 216 (247)
.+++++.|+.+.
T Consensus 193 ~~~i~~~l~~l~ 204 (207)
T COG1999 193 PEEIAADLKKLL 204 (207)
T ss_pred hHHHHHHHHHHh
Confidence 588888887764
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.49 E-value=3.2e-13 Score=105.27 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=73.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||++||+|| ++||++|+.++|.+.+++++|.+ .+.|+.|+.|...
T Consensus 19 ~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-------------------------------- 64 (142)
T cd02950 19 NGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-------------------------------- 64 (142)
T ss_pred CCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc--------------------------------
Confidence 6899999999 99999999999999999999975 5889998887411
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+.+.|++. .+|+++++|++|+++..+.|..+ .+++.+.|+.+.
T Consensus 65 ~~~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G~~~----~~~l~~~l~~l~ 110 (142)
T cd02950 65 WLPEIDRYRVD------GIPHFVFLDREGNEEGQSIGLQP----KQVLAQNLDALV 110 (142)
T ss_pred cHHHHHHcCCC------CCCEEEEECCCCCEEEEEeCCCC----HHHHHHHHHHHH
Confidence 12456788998 89999999999999998877543 344555555544
No 58
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=8.4e-13 Score=101.44 Aligned_cols=136 Identities=19% Similarity=0.221 Sum_probs=97.6
Q ss_pred CCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC--------ChHhH
Q psy15453 59 APYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD--------SHFTH 130 (247)
Q Consensus 59 ~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d--------~~~~~ 130 (247)
+-+|+. .+.+|++++|++|+||++||+.. |+.|+.-+ +...|+.+|++|+++|++||++..+ +.+++
T Consensus 5 ~yd~~~---~~~~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 5 IYDFSV---KDIDGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred ccccee---eccCCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 457887 45599999999999999999999 99999888 9999999999999999999999653 35667
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCC---chHHHHhCCcccCC-C-------ccceeEEEEcCCCcEEEEEecCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYGVYLEDK-G-------HSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~---~~~~~~~~~~~~~~-g-------~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
..|.... | +.+||++..-+ ...+..|....... | .+.=+-||||++|+|+.++ .+.
T Consensus 80 ~~fC~~~--------Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf-~p~ 146 (162)
T COG0386 80 AKFCQLN--------Y----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF-SPK 146 (162)
T ss_pred HHHHHhc--------c----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee-CCC
Confidence 7777642 3 78999986443 23333333322221 1 1334679999999999998 333
Q ss_pred CCCCCHHHHHHHHHhh
Q psy15453 200 PVGRSVEETLRLVRAF 215 (247)
Q Consensus 200 ~~~~~~~~il~~l~~l 215 (247)
... +++...|+++
T Consensus 147 t~P---~d~~~~Ie~l 159 (162)
T COG0386 147 TKP---EDIELAIEKL 159 (162)
T ss_pred CCh---hhHHHHHHHH
Confidence 222 3333355544
No 59
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.46 E-value=2.5e-13 Score=116.65 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=83.5
Q ss_pred ceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCC
Q psy15453 72 IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDK 151 (247)
Q Consensus 72 G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (247)
.+...+++++|+++||+|| ++||++|+.++|.|++++++| ++.|++|+.|....
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~---------------------- 209 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL---------------------- 209 (271)
T ss_pred HHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc----------------------
Confidence 3447788899999999999 999999999999999999887 69999999986321
Q ss_pred cceeEEecCCchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 152 LKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 152 ~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..|+.. +.+..+.+.||+. .+|++||+|++ |+|..+..|..+ .+++.+.+..+.
T Consensus 210 ~~fp~~-~~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~~s----~~eL~~~i~~~a 264 (271)
T TIGR02740 210 PGFPNA-RPDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGVMS----ADELVDRILLAA 264 (271)
T ss_pred ccCCcc-cCCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCCCC----HHHHHHHHHHHh
Confidence 124444 3456688999998 89999999994 666656556554 466666666654
No 60
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.43 E-value=1.1e-12 Score=96.53 Aligned_cols=80 Identities=13% Similarity=0.051 Sum_probs=65.0
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
+.+||++||.|| ++||++|+.++|.|+++++++ .++.++.|+.|....
T Consensus 12 ~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~----------------------------- 59 (103)
T cd02985 12 KAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDS----------------------------- 59 (103)
T ss_pred HcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChH-----------------------------
Confidence 346899999999 999999999999999999998 378999998875211
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
...+++.|++. .+|+++++ ++|+++..+.|..
T Consensus 60 --~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~~ 91 (103)
T cd02985 60 --TMELCRREKII------EVPHFLFY-KDGEKIHEEEGIG 91 (103)
T ss_pred --HHHHHHHcCCC------cCCEEEEE-eCCeEEEEEeCCC
Confidence 13567788898 88986666 8999998886644
No 61
>KOG2501|consensus
Probab=99.36 E-value=2.2e-12 Score=100.26 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=86.4
Q ss_pred ecCCceeEEcC-CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChH-hHHHHHHHhhccccc
Q psy15453 68 VDGNIKEIKLT-DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHF-THRAWINSLKKDNSL 143 (247)
Q Consensus 68 ~d~~G~~v~l~-~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~-~~~~~~~~~~~~~~~ 143 (247)
.+.+|..+..+ .++||++.++|- |.|||+|+...|.|.++|++.++. .++||.||.|..+ +...+....
T Consensus 18 ~~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~------ 90 (157)
T KOG2501|consen 18 RKQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH------ 90 (157)
T ss_pred eccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc------
Confidence 45577777777 678999999998 999999999999999999999853 4899999998744 455555532
Q ss_pred cccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 144 KKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 144 ~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+|. .+-.|+-.+..+++.+.|++. .+|+..++.++|+++...
T Consensus 91 ---~~~-W~~iPf~d~~~~~l~~ky~v~------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 ---HGD-WLAIPFGDDLIQKLSEKYEVK------GIPALVILKPDGTVVTED 132 (157)
T ss_pred ---CCC-eEEecCCCHHHHHHHHhcccC------cCceeEEecCCCCEehHh
Confidence 221 334454444448899999999 999999999999888553
No 62
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.36 E-value=5.7e-12 Score=92.36 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=65.1
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
++++||+++|.|| ++||++|+.++|.+.+++++++ ++.++.|..+.
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~------------------------------- 59 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS------------------------------- 59 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC-------------------------------
Confidence 3578999999999 9999999999999999999986 57787775431
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
....+.++|++. .+|+++++++ | .+..+.|. .+.+++.+
T Consensus 60 --~~~~l~~~~~V~------~~PT~~lf~~-g-~~~~~~G~----~~~~~l~~ 98 (100)
T cd02999 60 --IKPSLLSRYGVV------GFPTILLFNS-T-PRVRYNGT----RTLDSLAA 98 (100)
T ss_pred --CCHHHHHhcCCe------ecCEEEEEcC-C-ceeEecCC----CCHHHHHh
Confidence 123678999998 8999999975 4 44455454 33455544
No 63
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.32 E-value=2.3e-11 Score=90.81 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=71.1
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
.+|++++|.|| ++||++|+...|.+.++.++++..++.++.|+.|.
T Consensus 22 ~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------------------------------- 67 (111)
T cd02963 22 SFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------------------------------- 67 (111)
T ss_pred cCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---------------------------------
Confidence 36899999999 99999999999999999999986678888887653
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
+..+.+.|++. .+|+++++. +|+++....|..+ .+++.+.|+.
T Consensus 68 -~~~l~~~~~V~------~~Pt~~i~~-~g~~~~~~~G~~~----~~~l~~~i~~ 110 (111)
T cd02963 68 -ERRLARKLGAH------SVPAIVGII-NGQVTFYHDSSFT----KQHVVDFVRK 110 (111)
T ss_pred -cHHHHHHcCCc------cCCEEEEEE-CCEEEEEecCCCC----HHHHHHHHhc
Confidence 23577888998 899999994 8888777655433 4666666654
No 64
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.31 E-value=2e-11 Score=89.74 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=67.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.|++++|+|| ++||++|+..+|.+.++++++++..+.++.|+.|.
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~---------------------------------- 60 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT---------------------------------- 60 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC----------------------------------
Confidence 4789999999 99999999999999999999875456777776652
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
..+.++|++. .+|+++++ ++|+++....|. +.+++.+.|+.+
T Consensus 61 -~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~-----~~~~~~~~i~~~ 102 (102)
T cd02948 61 -IDTLKRYRGK------CEPTFLFY-KNGELVAVIRGA-----NAPLLNKTITEL 102 (102)
T ss_pred -HHHHHHcCCC------cCcEEEEE-ECCEEEEEEecC-----ChHHHHHHHhhC
Confidence 2356888888 88976666 689988887553 347777777653
No 65
>KOG2792|consensus
Probab=99.30 E-value=8.7e-12 Score=103.38 Aligned_cols=137 Identities=19% Similarity=0.325 Sum_probs=96.7
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCC-CcHHHHHHHHHHHHHHHhc-CcE--EEEEeCCC-
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF-VCPTEVLALNEKIDEFHKI-GAE--VVGVSVDS- 126 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp-~C~~~~~~l~~l~~~~~~~-~~~--vl~Vs~d~- 126 (247)
...+| -+|+| +|.+|+.++-.+|+||+++|+|- .|+|| .|+.|+..|.+..+++.++ ++. -|.|++|+
T Consensus 115 k~~iG---GpF~L---~d~~Gk~~te~df~Gkw~LiYFG-FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 115 KPAIG---GPFSL---VDHDGKRVTEKDFLGKWSLIYFG-FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred CCccC---CceEE---EecCCCeecccccccceEEEEec-ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 45566 47998 78899999999999999999999 88888 8999999999999999843 333 46777766
Q ss_pred ---hHhHHHHHHHhhccccccccCCCCCcceeEEecC---CchHHHHhCCcccCC----C-----ccceeEEEEcCCCcE
Q psy15453 127 ---HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL---THEISRDYGVYLEDK----G-----HSLRGLFIIDREGIV 191 (247)
Q Consensus 127 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~---~~~~~~~~~~~~~~~----g-----~~~p~~~lId~~G~v 191 (247)
++...++.+.+.. ..--|++. -..+++.|.|+.... + -+.=.+|||||+|++
T Consensus 188 RD~~~~~~eY~~eF~p-------------kllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~F 254 (280)
T KOG2792|consen 188 RDSVEVVAEYVSEFHP-------------KLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEF 254 (280)
T ss_pred cCCHHHHHHHHHhcCh-------------hhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcce
Confidence 4555666665422 22223332 267888998886541 1 133468999999999
Q ss_pred EEEEecCCCCCCCHHHHHHHH
Q psy15453 192 RQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 192 ~~~~~~~~~~~~~~~~il~~l 212 (247)
+..+ |. ..+.+++.+.|
T Consensus 255 vd~~-Gr---N~~~~~~~~~I 271 (280)
T KOG2792|consen 255 VDYY-GR---NYDADELADSI 271 (280)
T ss_pred ehhh-cc---cCCHHHHHHHH
Confidence 9876 22 22345555444
No 66
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.29 E-value=2.7e-11 Score=92.11 Aligned_cols=103 Identities=19% Similarity=0.122 Sum_probs=75.0
Q ss_pred CC-CeEEEEEEeCCCCCCcHHHHHHHH---HHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 81 RG-KYLVFFFYPLDFTFVCPTEVLALN---EKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 81 ~g-k~vvl~F~~a~~Cp~C~~~~~~l~---~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
.| |+++|.|| ++||++|+...+.+. ++.+.+++ ++.++.|+.|....... |..
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~---------------------~~~ 68 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTD---------------------FDG 68 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeec---------------------cCC
Confidence 47 89999999 999999999999885 56666654 78889998875332111 111
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.......+.++|++. .+|+++++|++ |+++....|..+ .+++.+.|+.+.
T Consensus 69 ~~~~~~~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~~----~~~~~~~l~~~~ 119 (125)
T cd02951 69 EALSEKELARKYRVR------FTPTVIFLDPEGGKEIARLPGYLP----PDEFLAYLEYVQ 119 (125)
T ss_pred CCccHHHHHHHcCCc------cccEEEEEcCCCCceeEEecCCCC----HHHHHHHHHHHH
Confidence 112457899999998 89999999999 899988766543 355556665554
No 67
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1e-10 Score=89.45 Aligned_cols=139 Identities=24% Similarity=0.371 Sum_probs=109.3
Q ss_pred ccccCCCCCCceeeeee-cC--C-ceeEEcCCC-CCCeEEEEEEeCCCCCCcHH-HHHHHHHHHHHHHhcCcE-EEEEeC
Q psy15453 52 NAVVMKPAPYWKGTAVV-DG--N-IKEIKLTDY-RGKYLVFFFYPLDFTFVCPT-EVLALNEKIDEFHKIGAE-VVGVSV 124 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~-d~--~-G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~-~~~~l~~l~~~~~~~~~~-vl~Vs~ 124 (247)
...+|+++|+.++..-. |. + -..++..++ +||.++|+=.|+.+.|.|.. ++|...+++++|+++|+. |+.||+
T Consensus 2 ~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV 81 (165)
T COG0678 2 TIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV 81 (165)
T ss_pred ccccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe
Confidence 35789999999986421 11 1 234555555 79999999999999999997 999999999999999985 788899
Q ss_pred CChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCC--c---cceeEEEEcCCCcEEEEEecCC
Q psy15453 125 DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG--H---SLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g--~---~~p~~~lId~~G~v~~~~~~~~ 199 (247)
++..-..+|.+.. |. .-+..++.|.++++.+..|......+ + .-+...|| +||.|.+.+..+.
T Consensus 82 ND~FVm~AWak~~----------g~-~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p 149 (165)
T COG0678 82 NDAFVMNAWAKSQ----------GG-EGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPP 149 (165)
T ss_pred CcHHHHHHHHHhc----------CC-CccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCC
Confidence 9999999999954 33 23899999999999999999877653 2 23556777 6899999987665
Q ss_pred CCC
Q psy15453 200 PVG 202 (247)
Q Consensus 200 ~~~ 202 (247)
..+
T Consensus 150 ~~~ 152 (165)
T COG0678 150 GDP 152 (165)
T ss_pred CCc
Confidence 443
No 68
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.25 E-value=7.4e-11 Score=85.29 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=66.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+|++++|.|| ++||++|+...|.+.++++.+.. .+.++.|+.+.
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------------------------------- 54 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA---------------------------------- 54 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC----------------------------------
Confidence 4789999999 99999999999999999999864 46677776653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
...+.+.|++. .+|++++++ +|+++..+.|..+ .+++...|
T Consensus 55 ~~~l~~~~~i~------~~Pt~~~~~-~g~~~~~~~g~~~----~~~l~~~l 95 (96)
T cd02956 55 QPQIAQQFGVQ------ALPTVYLFA-AGQPVDGFQGAQP----EEQLRQML 95 (96)
T ss_pred CHHHHHHcCCC------CCCEEEEEe-CCEEeeeecCCCC----HHHHHHHh
Confidence 24677888998 899999997 8988877655432 34554443
No 69
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.22 E-value=1.8e-10 Score=85.90 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=72.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++++||.|| |+||++|+...|.|.++.+++.+ .+.++-|+.|.
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~---------------------------------- 56 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDE---------------------------------- 56 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCC----------------------------------
Confidence 3679999999 99999999999999999999863 26788887764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV------GRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~------~~~~~~il~~l~~l 215 (247)
...+++.|++. .+|+++++ ++|+.+....|..+. .++-++.++.++.+
T Consensus 57 ~~~la~~~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 57 VPDFNKMYELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred CHHHHHHcCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 35788999999 89999888 689999988765542 23445555555443
No 70
>KOG1651|consensus
Probab=99.21 E-value=1.2e-10 Score=90.69 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=87.5
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--------hH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--------HF 128 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--------~~ 128 (247)
..+-+|+. .|.+|+.|+|+.|+||++||+.. |+.|+.-......|+.++++|+++|++|+++..+. .+
T Consensus 12 ~siydf~~---~d~~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 12 GSIYDFSA---KDLDGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred cceeeeEE---ecCCCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 45668887 45599999999999999999999 99999999999999999999999999999996532 33
Q ss_pred hHHHHHHHhhccccccccCCCCCcceeEEecC--C-chHHHHhCCcccCC----Cc---cceeEEEEcCCCcEEEEE
Q psy15453 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDL--T-HEISRDYGVYLEDK----GH---SLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~--~-~~~~~~~~~~~~~~----g~---~~p~~~lId~~G~v~~~~ 195 (247)
++..+... +. +..|+++..- + ..-...|...-... |. ..=+-||||++|+|+.++
T Consensus 88 Ei~~f~~~---------r~---~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry 152 (171)
T KOG1651|consen 88 EILNFVKV---------RY---GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRF 152 (171)
T ss_pred HHHHHHHh---------cc---CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEee
Confidence 44444442 12 4566666422 2 12222222221111 11 223568999999999998
No 71
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.20 E-value=1.1e-10 Score=85.92 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=68.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.||+++|.|| ++||++|+...+.+ .++.+.+++ ++.++.|+.+....
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~---------------------------- 59 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDP---------------------------- 59 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCH----------------------------
Confidence 4789999999 99999999999887 577777765 78888887754110
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDR-EGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~-~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
....+.++|++. .+|+++++++ +|++...+.|..+ .+++.+.|
T Consensus 60 --~~~~~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~~~----~~~l~~~l 103 (104)
T cd02953 60 --EITALLKRFGVF------GPPTYLFYGPGGEPEPLRLPGFLT----ADEFLEAL 103 (104)
T ss_pred --HHHHHHHHcCCC------CCCEEEEECCCCCCCCcccccccC----HHHHHHHh
Confidence 014677888998 8999999999 8998877655443 45555444
No 72
>KOG0541|consensus
Probab=99.18 E-value=1.8e-10 Score=88.68 Aligned_cols=141 Identities=22% Similarity=0.336 Sum_probs=108.8
Q ss_pred ccccccCCCCCCceeeeeecCC----ceeEEcCCC-CCCeEEEEEEeCCCCCC-cHHHHHHHHHHHHHHHhcCcE-EEEE
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGN----IKEIKLTDY-RGKYLVFFFYPLDFTFV-CPTEVLALNEKIDEFHKIGAE-VVGV 122 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~----G~~v~l~~~-~gk~vvl~F~~a~~Cp~-C~~~~~~l~~l~~~~~~~~~~-vl~V 122 (247)
+..+.+|+..|+-.+..+.+.. +.++.++++ +||.++|+=.|+.+.|. |..++|-+.+..++++.+|+. ++.|
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicv 85 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICV 85 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEE
Confidence 4468899999993332111221 227888887 79999999999999999 568899999999999999985 7788
Q ss_pred eCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC----Cccc-eeEEEEcCCCcEEEEEec
Q psy15453 123 SVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK----GHSL-RGLFIIDREGIVRQITLN 197 (247)
Q Consensus 123 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~----g~~~-p~~~lId~~G~v~~~~~~ 197 (247)
|+|++..++.|.+.+.. +-...++.|+++++.+.+|+..+.. |... +...++ .||+|.+....
T Consensus 86 SVnDpFv~~aW~k~~g~-----------~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~nvE 153 (171)
T KOG0541|consen 86 SVNDPFVMKAWAKSLGA-----------NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVNVE 153 (171)
T ss_pred ecCcHHHHHHHHhhcCc-----------cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEEec
Confidence 99999999999997644 5688999999999999999876543 2233 344555 58999999876
Q ss_pred CCCCC
Q psy15453 198 DLPVG 202 (247)
Q Consensus 198 ~~~~~ 202 (247)
+.+.+
T Consensus 154 ~~g~~ 158 (171)
T KOG0541|consen 154 EGGTD 158 (171)
T ss_pred cCCCc
Confidence 66543
No 73
>PRK09381 trxA thioredoxin; Provisional
Probab=99.15 E-value=5.2e-10 Score=82.87 Aligned_cols=86 Identities=17% Similarity=0.330 Sum_probs=68.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++|||+|+..+|.++++++++.. ++.++.|+.|. .
T Consensus 21 ~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~----------------------------------~ 64 (109)
T PRK09381 21 DGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQ----------------------------------N 64 (109)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCC----------------------------------C
Confidence 679999999 99999999999999999999975 57888887653 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+.+.|++. .+|+++++ ++|++++...|..+ .+++...|++
T Consensus 65 ~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~~----~~~l~~~i~~ 106 (109)
T PRK09381 65 PGTAPKYGIR------GIPTLLLF-KNGEVAATKVGALS----KGQLKEFLDA 106 (109)
T ss_pred hhHHHhCCCC------cCCEEEEE-eCCeEEEEecCCCC----HHHHHHHHHH
Confidence 2456788888 89998888 68999988766543 4555555554
No 74
>PHA02278 thioredoxin-like protein
Probab=99.13 E-value=5.5e-10 Score=82.23 Aligned_cols=80 Identities=10% Similarity=0.088 Sum_probs=63.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+++++||.|| |+||++|+...|.+.++.+++.. .+.++-|+.|... . |
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~-----------------------~------d- 60 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAED-----------------------V------D- 60 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccc-----------------------c------c-
Confidence 5789999999 99999999999999999877542 4678888887411 0 1
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
...+++.|++. .+|+++++ ++|+.+....|..
T Consensus 61 ~~~l~~~~~I~------~iPT~i~f-k~G~~v~~~~G~~ 92 (103)
T PHA02278 61 REKAVKLFDIM------STPVLIGY-KDGQLVKKYEDQV 92 (103)
T ss_pred cHHHHHHCCCc------cccEEEEE-ECCEEEEEEeCCC
Confidence 24688999999 99988888 5799998876643
No 75
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.11 E-value=2.4e-10 Score=84.97 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=64.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH--hcCcEEEEEeCCChHhH-HHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH--KIGAEVVGVSVDSHFTH-RAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~--~~~~~vl~Vs~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.||++|+.|| +.|||+|+...+.+.+..+--. +.++.++.++.+..... ..+.... +. ..+
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~ 67 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFD-------------GQ--KNV 67 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHT-------------CH--SSC
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccc-------------cc--hhh
Confidence 4899999999 9999999988888876544211 23688888888765432 2232211 11 111
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
.....++.+.||+. .+|+++++|++|++++...|..+
T Consensus 68 ~~~~~~l~~~~~v~------gtPt~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 68 RLSNKELAQRYGVN------GTPTIVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp HHHHHHHHHHTT--------SSSEEEECTTTSCEEEEEESS--
T ss_pred hHHHHHHHHHcCCC------ccCEEEEEcCCCCEEEEecCCCC
Confidence 11235899999999 99999999999999988766654
No 76
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.10 E-value=6.2e-10 Score=82.67 Aligned_cols=88 Identities=13% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+||+++|.|| ++||++|+...|.+.++++++++.++.++.|+.|..
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--------------------------------- 65 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--------------------------------- 65 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---------------------------------
Confidence 4789999999 999999999999999999999866788888877640
Q ss_pred CchHHH-HhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 161 THEISR-DYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 161 ~~~~~~-~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
+..+.+ .|++. .+|++++++++++....+.|+ ..+.+.++..
T Consensus 66 ~~~~~~~~~~v~------~~Pti~~f~~~~~~~~~y~g~---~~~~~~l~~f 108 (109)
T cd02993 66 QREFAKEELQLK------SFPTILFFPKNSRQPIKYPSE---QRDVDSLLMF 108 (109)
T ss_pred chhhHHhhcCCC------cCCEEEEEcCCCCCceeccCC---CCCHHHHHhh
Confidence 112333 47888 889999998887766555342 2455666544
No 77
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.10 E-value=5.2e-10 Score=82.63 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.|++++|.|| ++||++|+...|.+.++++++.. .+.++.|+.+.. .
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------------~ 62 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------------K 62 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------------c
Confidence 3788999999 99999999999999999999864 578888887641 1
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCc----EEEEEecCCCCCCCHHHHHHHH
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGI----VRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~----v~~~~~~~~~~~~~~~~il~~l 212 (247)
...+.+.|++. .+|+++++++++. +...+.| ..+.+++.+.|
T Consensus 63 ~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~~~~~G----~~~~~~l~~fi 108 (109)
T cd03002 63 NKPLCGKYGVQ------GFPTLKVFRPPKKASKHAVEDYNG----ERSAKAIVDFV 108 (109)
T ss_pred cHHHHHHcCCC------cCCEEEEEeCCCcccccccccccC----ccCHHHHHHHh
Confidence 34677889998 8999999988873 3333323 33466666654
No 78
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.10 E-value=1.2e-09 Score=79.66 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=63.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+|+ ++|.|| ++||++|+...|.+.+++++++..++.+..|+.+.
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---------------------------------- 59 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---------------------------------- 59 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----------------------------------
Confidence 566 579999 99999999999999999988765567777665542
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
+..+.++|++. .+|+++++ ++|++ ..+.|.. ..+++.+.|+
T Consensus 60 ~~~~~~~~~i~------~~Pt~~~~-~~g~~-~~~~G~~----~~~~l~~~i~ 100 (101)
T cd02994 60 EPGLSGRFFVT------ALPTIYHA-KDGVF-RRYQGPR----DKEDLISFIE 100 (101)
T ss_pred CHhHHHHcCCc------ccCEEEEe-CCCCE-EEecCCC----CHHHHHHHHh
Confidence 23567888998 89999887 78986 4444433 3466666554
No 79
>KOG0910|consensus
Probab=99.09 E-value=8.3e-10 Score=85.20 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++||+|.|| |.||++|+...|.|+++..+|+. .+.+.-|+.|+ .
T Consensus 61 ~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~----------------------------------~ 104 (150)
T KOG0910|consen 61 DVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDE----------------------------------H 104 (150)
T ss_pred CCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEcccc----------------------------------c
Confidence 689999999 99999999999999999999964 58888877764 3
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
.+++..|++. .+|+++++ ++|..+....|..+
T Consensus 105 ~ela~~Y~I~------avPtvlvf-knGe~~d~~vG~~~ 136 (150)
T KOG0910|consen 105 PELAEDYEIS------AVPTVLVF-KNGEKVDRFVGAVP 136 (150)
T ss_pred cchHhhccee------eeeEEEEE-ECCEEeeeecccCC
Confidence 5788999999 89999999 58988877666554
No 80
>PRK10996 thioredoxin 2; Provisional
Probab=99.08 E-value=1.7e-09 Score=83.96 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=68.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|+++|.|| ++||++|+...|.|.++++++.. ++.++.|+.+.
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~---------------------------------- 94 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA---------------------------------- 94 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC----------------------------------
Confidence 4789999999 99999999999999999988864 57777775542
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.++|++. .+|+++++ ++|+++..+.|..+ .+++.+.|+.+
T Consensus 95 ~~~l~~~~~V~------~~Ptlii~-~~G~~v~~~~G~~~----~e~l~~~l~~~ 138 (139)
T PRK10996 95 ERELSARFRIR------SIPTIMIF-KNGQVVDMLNGAVP----KAPFDSWLNEA 138 (139)
T ss_pred CHHHHHhcCCC------ccCEEEEE-ECCEEEEEEcCCCC----HHHHHHHHHHh
Confidence 24678889998 89998887 58999988766533 45666666543
No 81
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.07 E-value=1.2e-09 Score=80.29 Aligned_cols=88 Identities=14% Similarity=0.211 Sum_probs=63.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++++++|.|| ++||++|+..+|.+++++++++..+ +.+..++.+.
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-------------------------------- 60 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-------------------------------- 60 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------------------------------
Confidence 4678999999 9999999999999999999997544 4444444432
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.|++. .+|++++++ +|.+ ..+.|. ...+++.+.++.+
T Consensus 61 --~~~~~~~~~I~------~~Pt~~l~~-~~~~-~~~~G~----~~~~~l~~~~~~~ 103 (104)
T cd03000 61 --YSSIASEFGVR------GYPTIKLLK-GDLA-YNYRGP----RTKDDIVEFANRV 103 (104)
T ss_pred --CHhHHhhcCCc------cccEEEEEc-CCCc-eeecCC----CCHHHHHHHHHhh
Confidence 23667889998 899999994 4543 444343 2356777776653
No 82
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.06 E-value=2.1e-09 Score=83.26 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++++||.|| ++||++|+...|.|.++.+++++ -+.|+-|+.|.
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe---------------------------------- 65 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKN-FAVIYLVDITE---------------------------------- 65 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCC----------------------------------
Confidence 4689999999 99999999999999999999863 26777887764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCc-EEEEEecCCC----CCCCHHHHHHHHHhhhcccccC---CccCCCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGI-VRQITLNDLP----VGRSVEETLRLVRAFQYTDEHG---EACPSGW 229 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~-v~~~~~~~~~----~~~~~~~il~~l~~l~~~~~~~---~~~~~~~ 229 (247)
..++++.|++. ..|+++++=++|+ .+....|... ...+.+++++.++.+.....+| ..||-++
T Consensus 66 ~~dla~~y~I~------~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~ 136 (142)
T PLN00410 66 VPDFNTMYELY------DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVISPKDY 136 (142)
T ss_pred CHHHHHHcCcc------CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCcc
Confidence 35788888887 6677774447887 6666555321 1345688888888877665554 5566655
No 83
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.05 E-value=5.3e-10 Score=81.70 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=60.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...|.+.++.++++. .+.|..|+.|.
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~---------------------------------- 60 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD---------------------------------- 60 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc----------------------------------
Confidence 4689999999 99999999999999999999974 47888888764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
...+.+.|++. .+|+++++ ++|+....+.|
T Consensus 61 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G 90 (101)
T cd03003 61 DRMLCRSQGVN------SYPSLYVF-PSGMNPEKYYG 90 (101)
T ss_pred cHHHHHHcCCC------ccCEEEEE-cCCCCcccCCC
Confidence 13567788888 88999888 68876655434
No 84
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.03 E-value=2.1e-09 Score=78.86 Aligned_cols=77 Identities=9% Similarity=0.061 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...|.+.++.++++. .+.+..|+.+.
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~---------------------------------- 61 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK---------------------------------- 61 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc----------------------------------
Confidence 3679999999 99999999999999999999853 57777777653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
...+.+.|++. .+|+++++.++|+....+.|..
T Consensus 62 ~~~~~~~~~i~------~~Pt~~~~~~g~~~~~~~~G~~ 94 (104)
T cd03004 62 YESLCQQANIR------AYPTIRLYPGNASKYHSYNGWH 94 (104)
T ss_pred hHHHHHHcCCC------cccEEEEEcCCCCCceEccCCC
Confidence 23567888898 8999999987657777765543
No 85
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.03 E-value=1.1e-09 Score=82.60 Aligned_cols=81 Identities=15% Similarity=0.217 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
+.-.||+++|.|| ++||++|+...|.+.+..+... .+..++.|..|...
T Consensus 15 A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~----------------------------- 63 (117)
T cd02959 15 AKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDE----------------------------- 63 (117)
T ss_pred HHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCC-----------------------------
Confidence 3346899999999 9999999999999999766554 24567777665411
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
....+.|++. |..+|+++++|++|+++..+.+
T Consensus 64 ----~~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 64 ----EPKDEEFSPD----GGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred ----CchhhhcccC----CCccceEEEECCCCCCchhhcc
Confidence 0112244443 1137999999999999886543
No 86
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.02 E-value=3.8e-09 Score=76.65 Aligned_cols=77 Identities=17% Similarity=0.221 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++++.|| ++||+.|+...|.+.++.+++.. ++.++.|+.|.
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~---------------------------------- 55 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE---------------------------------- 55 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------------
Confidence 4789999999 99999999999999999999864 57777776653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
+.++.+.|++. .+|+.++++ +|+++....|..+
T Consensus 56 ~~~l~~~~~v~------~vPt~~i~~-~g~~v~~~~g~~~ 88 (97)
T cd02949 56 DQEIAEAAGIM------GTPTVQFFK-DKELVKEISGVKM 88 (97)
T ss_pred CHHHHHHCCCe------eccEEEEEE-CCeEEEEEeCCcc
Confidence 23567788888 899999995 7998877755443
No 87
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.01 E-value=2.6e-09 Score=77.73 Aligned_cols=75 Identities=11% Similarity=0.189 Sum_probs=59.4
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh--cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHK--IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~--~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++|.|| ++||++|+..+|.+++++++++. ..+.++.|+.+. .
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------------~ 62 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----------------------------------H 62 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----------------------------------C
Confidence 5899999 99999999999999999999975 356777665542 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..+.+.|++. .+|+++++ ++|+.+..+.|..+
T Consensus 63 ~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~~ 94 (102)
T cd03005 63 RELCSEFQVR------GYPTLLLF-KDGEKVDKYKGTRD 94 (102)
T ss_pred hhhHhhcCCC------cCCEEEEE-eCCCeeeEeeCCCC
Confidence 3567788888 89999999 67887777666543
No 88
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.01 E-value=2.8e-09 Score=83.85 Aligned_cols=81 Identities=7% Similarity=0.115 Sum_probs=60.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
++++++|.|| ++||++|+...|.+.++.+++...++.++.|+.|..
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~--------------------------------- 91 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF--------------------------------- 91 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC---------------------------------
Confidence 4679999999 999999999999999999999766799999988752
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
..+.+.|++...-.-..+|+++++ ++|+.+....|
T Consensus 92 -~~la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 92 -PNVAEKFRVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred -HHHHHHcCceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 234444554400000048988888 58998888765
No 89
>KOG0907|consensus
Probab=99.01 E-value=3.7e-09 Score=78.09 Aligned_cols=75 Identities=15% Similarity=0.276 Sum_probs=64.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|.+|+.|+ |+||++|+...|.+.++..+|. ++.|+-|+.|.
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~--~v~Flkvdvde---------------------------------- 62 (106)
T KOG0907|consen 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYP--DVVFLKVDVDE---------------------------------- 62 (106)
T ss_pred CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCC--CCEEEEEeccc----------------------------------
Confidence 3689999998 9999999999999999999998 49999998874
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
...+++.|++. .+|++.++ ++|+.+....|..
T Consensus 63 ~~~~~~~~~V~------~~PTf~f~-k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 63 LEEVAKEFNVK------AMPTFVFY-KGGEEVDEVVGAN 94 (106)
T ss_pred CHhHHHhcCce------EeeEEEEE-ECCEEEEEEecCC
Confidence 14678889999 89999888 7888887775544
No 90
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.97 E-value=5.9e-09 Score=75.25 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=63.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...+.|.++.+++ ..++.++.|+.+. .
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~----------------------------------~ 57 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE----------------------------------L 57 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc----------------------------------C
Confidence 689999999 999999999999999999887 3367777765431 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
..+.++|++. .+|++++++ +|+++....|. +.+++.+.|
T Consensus 58 ~~~~~~~~i~------~~Pt~~~~~-~g~~~~~~~g~-----~~~~l~~~~ 96 (97)
T cd02984 58 PEISEKFEIT------AVPTFVFFR-NGTIVDRVSGA-----DPKELAKKV 96 (97)
T ss_pred HHHHHhcCCc------cccEEEEEE-CCEEEEEEeCC-----CHHHHHHhh
Confidence 4677889998 899988885 89998887553 235555443
No 91
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.96 E-value=6.5e-09 Score=75.83 Aligned_cols=79 Identities=11% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
++++++|.|| ++||++|+...|.++++.+++++ ..+.++.|+.+. +
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------------------------------~ 62 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--------------------------------P 62 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--------------------------------C
Confidence 4679999999 99999999999999999999874 235555555542 1
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
....+.+.|++. .+|+++++ ++|+++..+.|..
T Consensus 63 ~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~ 95 (104)
T cd02997 63 EHDALKEEYNVK------GFPTFKYF-ENGKFVEKYEGER 95 (104)
T ss_pred ccHHHHHhCCCc------cccEEEEE-eCCCeeEEeCCCC
Confidence 135677889988 88986666 6788777664543
No 92
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.96 E-value=6.1e-09 Score=75.57 Aligned_cols=88 Identities=13% Similarity=0.174 Sum_probs=65.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC-cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG-AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~-~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
++++++|.|| ++||+.|+...+.++++.+.++..+ +.++.+..+.
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--------------------------------- 57 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--------------------------------- 57 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---------------------------------
Confidence 6889999999 9999999999999999999887543 5555544432
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
...+.+.|++. .+|+++++++++. ...+.|. ...+++...|+.
T Consensus 58 -~~~~~~~~~i~------~~P~~~~~~~~~~-~~~~~g~----~~~~~l~~~i~~ 100 (102)
T TIGR01126 58 -EKDLASRFGVS------GFPTIKFFPKGKK-PVDYEGG----RDLEAIVEFVNE 100 (102)
T ss_pred -hHHHHHhCCCC------cCCEEEEecCCCc-ceeecCC----CCHHHHHHHHHh
Confidence 24677889998 8999999998887 4444343 235666666654
No 93
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.93 E-value=1.8e-08 Score=74.81 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=67.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+|++||.|+ ++||++|+..-|.|.++..+|++. +.|+-|..|.
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe---------------------------------- 56 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK---------------------------------- 56 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc----------------------------------
Confidence 5899999999 999999999999999999999632 8888888874
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV------GRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~------~~~~~~il~~l~~l 215 (247)
..++.+.|++. ..|+++++ ++|+-..+-.|-.+. -.+-++.++.++.+
T Consensus 57 v~dva~~y~I~------amPtfvff-kngkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 57 VPVYTQYFDIS------YIPSTIFF-FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred cHHHHHhcCce------eCcEEEEE-ECCcEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 24677888887 78988877 556655554433221 22335666665543
No 94
>PTZ00051 thioredoxin; Provisional
Probab=98.93 E-value=6e-09 Score=75.43 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=60.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.+++++|.|| ++||++|+...+.+.++++++. ++.++.|+.+.
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~---------------------------------- 59 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE---------------------------------- 59 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------------
Confidence 3679999999 9999999999999999998764 57777776542
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~ 198 (247)
...+.++|++. .+|+++++ ++|+++..+.|.
T Consensus 60 ~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~ 90 (98)
T PTZ00051 60 LSEVAEKENIT------SMPTFKVF-KNGSVVDTLLGA 90 (98)
T ss_pred hHHHHHHCCCc------eeeEEEEE-eCCeEEEEEeCC
Confidence 24677889998 88986666 799999888664
No 95
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.91 E-value=8.6e-09 Score=77.12 Aligned_cols=75 Identities=3% Similarity=0.001 Sum_probs=59.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.++++||.|| |+||++|+..+|.+.++.+++++ .+.|..|+.|.
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~---------------------------------- 71 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWW---------------------------------- 71 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCC----------------------------------
Confidence 4679999999 99999999999999999999974 37788887764
Q ss_pred CchHH-HHhCCcccCCCccceeEEEEcCCCcEEEEEecC
Q psy15453 161 THEIS-RDYGVYLEDKGHSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 161 ~~~~~-~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~ 198 (247)
+..+. +.|++. .+|+..++ ++|+....+.|.
T Consensus 72 ~~~l~~~~~~I~------~~PTl~lf-~~g~~~~~y~G~ 103 (113)
T cd03006 72 PQGKCRKQKHFF------YFPVIHLY-YRSRGPIEYKGP 103 (113)
T ss_pred ChHHHHHhcCCc------ccCEEEEE-ECCccceEEeCC
Confidence 12455 578888 88998888 678866555443
No 96
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.91 E-value=1.2e-08 Score=75.47 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=61.3
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-----CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-----GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-----~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+++++|.|| ++||++|+...|.++++++++++. .+.+..|+.|
T Consensus 18 ~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d------------------------------- 65 (108)
T cd02996 18 AELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD------------------------------- 65 (108)
T ss_pred CCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC-------------------------------
Confidence 678999999 999999999999999999888632 2444444443
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE-EEEecCCCCCCCHHHHHHH
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR-QITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~-~~~~~~~~~~~~~~~il~~ 211 (247)
.+..+.++|++. .+|+++++ ++|++. ..+.| ..+.+++.+.
T Consensus 66 ---~~~~l~~~~~v~------~~Ptl~~~-~~g~~~~~~~~g----~~~~~~l~~f 107 (108)
T cd02996 66 ---KESDIADRYRIN------KYPTLKLF-RNGMMMKREYRG----QRSVEALAEF 107 (108)
T ss_pred ---CCHHHHHhCCCC------cCCEEEEE-eCCcCcceecCC----CCCHHHHHhh
Confidence 335788999998 89999998 688844 33322 3345665543
No 97
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.90 E-value=2.1e-08 Score=72.39 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=66.6
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...+.+.++.+++.. ++.++.|..+. +
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------------~ 57 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE----------------------------------N 57 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC----------------------------------C
Confidence 568999999 99999999999999999988863 58888887653 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+.++|++. .+|+++++ ++|++.....|.. +.+++.+.|+.
T Consensus 58 ~~~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~ 99 (101)
T TIGR01068 58 PDIAAKYGIR------SIPTLLLF-KNGKEVDRSVGAL----PKAALKQLINK 99 (101)
T ss_pred HHHHHHcCCC------cCCEEEEE-eCCcEeeeecCCC----CHHHHHHHHHh
Confidence 3566788888 89999999 6888877665543 34666666654
No 98
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.89 E-value=2.7e-08 Score=72.19 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=69.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++++||.|+ +.||++|+...|.+.++.+++.+ ++.++-|+.+. .
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------------~ 60 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE----------------------------------N 60 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------------S
T ss_pred CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc----------------------------------c
Confidence 689999999 99999999999999999999987 78888887753 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+.+.|++. .+|+++++. +|+....+.|.. +.+++.+.|+.
T Consensus 61 ~~l~~~~~v~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~i~~ 102 (103)
T PF00085_consen 61 KELCKKYGVK------SVPTIIFFK-NGKEVKRYNGPR----NAESLIEFIEK 102 (103)
T ss_dssp HHHHHHTTCS------SSSEEEEEE-TTEEEEEEESSS----SHHHHHHHHHH
T ss_pred chhhhccCCC------CCCEEEEEE-CCcEEEEEECCC----CHHHHHHHHHc
Confidence 4688999998 899999995 677766665542 36777777753
No 99
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.86 E-value=1.3e-08 Score=74.20 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=60.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+++++|.|| ++||++|+...|.+.++.++++ ..++.++.|+.+.+
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------------------------------- 63 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--------------------------------- 63 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------------
Confidence 568999999 9999999999999999999987 33567766665431
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
...+.++|++. .+|++++++++|+....+.|
T Consensus 64 ~~~~~~~~~i~------~~P~~~~~~~~~~~~~~~~g 94 (105)
T cd02998 64 NKDLAKKYGVS------GFPTLKFFPKGSTEPVKYEG 94 (105)
T ss_pred chhhHHhCCCC------CcCEEEEEeCCCCCccccCC
Confidence 24678889988 89999999888766555544
No 100
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.84 E-value=9.7e-09 Score=77.37 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCCeEEEEEEeC-------CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcc
Q psy15453 81 RGKYLVFFFYPL-------DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLK 153 (247)
Q Consensus 81 ~gk~vvl~F~~a-------~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (247)
+|++++|.|| | +||++|+...|.+.++.++++. ++.++-|..|...
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~------------------------- 72 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP------------------------- 72 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc-------------------------
Confidence 5889999999 9 9999999999999999999873 5899999887511
Q ss_pred eeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE
Q psy15453 154 IPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR 192 (247)
Q Consensus 154 ~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~ 192 (247)
...|++..+.+.|++. . .+|++++++..++++
T Consensus 73 --~w~d~~~~~~~~~~I~-~----~iPT~~~~~~~~~l~ 104 (119)
T cd02952 73 --YWRDPNNPFRTDPKLT-T----GVPTLLRWKTPQRLV 104 (119)
T ss_pred --cccCcchhhHhccCcc-c----CCCEEEEEcCCceec
Confidence 1223456777888875 2 689999996655554
No 101
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.82 E-value=1e-07 Score=71.28 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=62.3
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...|.|.++.+++. ++.++-|+.+. .
T Consensus 22 ~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~----------------------------------~ 64 (113)
T cd02989 22 SERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK----------------------------------A 64 (113)
T ss_pred CCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc----------------------------------C
Confidence 578999999 9999999999999999999885 57888777653 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..++++|++. .+|+++++ ++|+++....|..+
T Consensus 65 ~~l~~~~~v~------~vPt~l~f-k~G~~v~~~~g~~~ 96 (113)
T cd02989 65 PFLVEKLNIK------VLPTVILF-KNGKTVDRIVGFEE 96 (113)
T ss_pred HHHHHHCCCc------cCCEEEEE-ECCEEEEEEECccc
Confidence 4688999999 89999888 58888887766543
No 102
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.81 E-value=3.4e-08 Score=82.48 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...|.+++++++++. .+.+..|+.+. +
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~----------------------------------~ 95 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDATR----------------------------------A 95 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc----------------------------------c
Confidence 578999999 99999999999999999999874 35555443331 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..+.++|++. .+|++++++ +|++.....| ..+.+++.+.+++.-
T Consensus 96 ~~l~~~~~I~------~~PTl~~f~-~G~~v~~~~G----~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 96 LNLAKRFAIK------GYPTLLLFD-KGKMYQYEGG----DRSTEKLAAFALGDF 139 (224)
T ss_pred HHHHHHcCCC------cCCEEEEEE-CCEEEEeeCC----CCCHHHHHHHHHHHH
Confidence 4678899998 899999997 7887765433 234577777765543
No 103
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.81 E-value=3e-08 Score=75.25 Aligned_cols=83 Identities=10% Similarity=0.060 Sum_probs=58.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh-----HHHHHHHhhccccccccCCCCCcceeE
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT-----HRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
|+.++++|+ ++|||+|+...|.|.++.++. ++.++.|+.|.... .+++
T Consensus 23 ~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~----------------------- 75 (122)
T TIGR01295 23 KETATFFIG-RKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDL----------------------- 75 (122)
T ss_pred CCcEEEEEE-CCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHH-----------------------
Confidence 678899999 999999999999999998872 57899998874210 0011
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
.++.+.|++... -..+|+++++ ++|+.+....|..
T Consensus 76 -----~~~~~~~~i~~~--i~~~PT~v~~-k~Gk~v~~~~G~~ 110 (122)
T TIGR01295 76 -----TAFRSRFGIPTS--FMGTPTFVHI-TDGKQVSVRCGSS 110 (122)
T ss_pred -----HHHHHHcCCccc--CCCCCEEEEE-eCCeEEEEEeCCC
Confidence 234444443200 0168999988 6898888886753
No 104
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.81 E-value=2e-08 Score=75.02 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...|.+.++.+++. ++.++-|+.+. .
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~----------------------------------~ 66 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK----------------------------------A 66 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh----------------------------------h
Confidence 579999999 9999999999999999999985 57777666542 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
.+++.|++. .+|+++++ ++|+++....|..
T Consensus 67 -~l~~~~~i~------~~Pt~~~f-~~G~~v~~~~G~~ 96 (113)
T cd02957 67 -FLVNYLDIK------VLPTLLVY-KNGELIDNIVGFE 96 (113)
T ss_pred -HHHHhcCCC------cCCEEEEE-ECCEEEEEEecHH
Confidence 566788888 88988887 6899998876643
No 105
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.80 E-value=2.6e-08 Score=71.48 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=63.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
++++++|.|| +.||++|+...+.+.++.+.++ ..++.++.|+.+.
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------------------------------- 59 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--------------------------------- 59 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---------------------------------
Confidence 3568999999 9999999999999999999885 3467777776542
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
+..+.+.|++. .+|++++++++|+....+.|. .+.+++.+
T Consensus 60 -~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~ 99 (101)
T cd02961 60 -NNDLCSEYGVR------GYPTIKLFPNGSKEPVKYEGP----RTLESLVE 99 (101)
T ss_pred -hHHHHHhCCCC------CCCEEEEEcCCCcccccCCCC----cCHHHHHh
Confidence 24677888888 889999999887555444333 24555554
No 106
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.80 E-value=5.5e-08 Score=73.46 Aligned_cols=86 Identities=6% Similarity=0.059 Sum_probs=66.3
Q ss_pred CeEEEEEEeCCCCCC--cH--HHHHHHHHHHHHH-HhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 83 KYLVFFFYPLDFTFV--CP--TEVLALNEKIDEF-HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~--C~--~~~~~l~~l~~~~-~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.++|+.|| ++||++ |+ ...|.|.++..++ ++.++.|.-|+.|.
T Consensus 28 ~~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~------------------------------- 75 (120)
T cd03065 28 VLCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK------------------------------- 75 (120)
T ss_pred ceEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------------------------------
Confidence 47788888 999987 99 7778888888776 34468888887764
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..++++||+. .+|+++++ ++|+++. +.|.. ..+.+.+.|+.+
T Consensus 76 ---~~~La~~~~I~------~iPTl~lf-k~G~~v~-~~G~~----~~~~l~~~l~~~ 118 (120)
T cd03065 76 ---DAKVAKKLGLD------EEDSIYVF-KDDEVIE-YDGEF----AADTLVEFLLDL 118 (120)
T ss_pred ---CHHHHHHcCCc------cccEEEEE-ECCEEEE-eeCCC----CHHHHHHHHHHH
Confidence 35889999999 99999999 5899876 54543 357777777765
No 107
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.79 E-value=2.6e-08 Score=73.62 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=55.4
Q ss_pred CceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 61 YWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 61 ~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+|+. .|.+|+.++|++|+||++||+.. |+.|+.-. +...|++++++|+++|++||++..+.
T Consensus 3 df~~---~~~~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSA---KDIDGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GSEE---EBTTSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred ceee---eCCCCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 5776 45599999999999999999999 99999999 99999999999999999999997643
No 108
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.77 E-value=1.4e-07 Score=78.49 Aligned_cols=144 Identities=22% Similarity=0.302 Sum_probs=103.2
Q ss_pred cccccCCCCCCceeeeeecCCcee-EEcCCCC--CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC---
Q psy15453 51 TNAVVMKPAPYWKGTAVVDGNIKE-IKLTDYR--GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--- 124 (247)
Q Consensus 51 ~~~~~G~~~P~f~l~~~~d~~G~~-v~l~~~~--gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--- 124 (247)
.....|..||+..+.++ +|+. .++-||. +||.||+|. +.-||+-...+..++++.++|.+ -+.++.|-.
T Consensus 71 ~~a~~G~~APns~vv~l---~g~~~~~ildf~~g~RPLVlnFG-S~TCPpF~~~l~~f~~l~~~f~d-~adFl~VYI~EA 145 (237)
T PF00837_consen 71 KEAKLGGPAPNSPVVTL---DGQRSCRILDFAKGNRPLVLNFG-SCTCPPFMAKLDAFKRLVEDFSD-VADFLIVYIEEA 145 (237)
T ss_pred cceeCCCCCCCCceEee---CCCcceeHHHhccCCCCeEEEcc-cccchHHHHHHHHHHHHHHHhhh-hhheehhhHhhh
Confidence 34688999999999555 8888 9999994 679999999 66699999999999999999985 245555521
Q ss_pred ---C------------ChHhHHHHHHHhhccccccccCCCCCcceeEEecC-CchHHHHhCCcccCCCccceeEEEEcCC
Q psy15453 125 ---D------------SHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLEDKGHSLRGLFIIDRE 188 (247)
Q Consensus 125 ---d------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~~~~~~~~~~~~~~~g~~~p~~~lId~~ 188 (247)
| ...++++.....+. ++++ ....+++.|. +....+.||...+ ..||| ++
T Consensus 146 HpsDgW~~~~~~~~i~qh~sledR~~aA~~---l~~~----~~~~pi~vD~mdN~~~~~YgA~Pe-------RlyIi-~~ 210 (237)
T PF00837_consen 146 HPSDGWAFGNNPYEIPQHRSLEDRLRAAKL---LKEE----FPQCPIVVDTMDNNFNKAYGALPE-------RLYII-QD 210 (237)
T ss_pred CcCCCccCCCCceeecCCCCHHHHHHHHHH---HHhh----CCCCCEEEEccCCHHHHHhCCCcc-------eEEEE-EC
Confidence 1 11222222222211 1112 2577888876 4889999999822 57777 49
Q ss_pred CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 189 GIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 189 G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
|+|+|.. |+-+..-+.+|+-+.|+..
T Consensus 211 gkv~Y~G-g~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 211 GKVVYKG-GPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CEEEEeC-CCCCCcCCHHHHHHHHHhc
Confidence 9999986 5556777789998888764
No 109
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.77 E-value=8.3e-08 Score=69.84 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=61.5
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| ++||++|+...|.+.++.+++.. .+.+..++.+. .
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~----------------------------------~ 61 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV----------------------------------H 61 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc----------------------------------h
Confidence 567999999 99999999999999999998864 47777776542 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHH
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRL 211 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~ 211 (247)
..+.++|++. .+|++++++++......+.| ..+.+++.+.
T Consensus 62 ~~~~~~~~i~------~~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~ 101 (103)
T cd03001 62 QSLAQQYGVR------GFPTIKVFGAGKNSPQDYQG----GRTAKAIVSA 101 (103)
T ss_pred HHHHHHCCCC------ccCEEEEECCCCcceeecCC----CCCHHHHHHH
Confidence 4667888898 89999999765343333333 3445666554
No 110
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.77 E-value=1.9e-07 Score=70.99 Aligned_cols=100 Identities=7% Similarity=-0.136 Sum_probs=62.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.||+++|.|+ ++||+.|+..-... .++.+.+. +++.+|-|..+...+.. +.+
T Consensus 14 ~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~---~~~-------------------- 68 (124)
T cd02955 14 EDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVD---KIY-------------------- 68 (124)
T ss_pred cCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHH---HHH--------------------
Confidence 5899999999 99999999876532 24555443 35666666554322111 100
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC----CCCCCHHHHHHHHHh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL----PVGRSVEETLRLVRA 214 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~----~~~~~~~~il~~l~~ 214 (247)
.......||+. ..|+++++|++|++++...+-. -.+....++++.|+.
T Consensus 69 ---~~~~~~~~~~~------G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 69 ---MNAAQAMTGQG------GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred ---HHHHHHhcCCC------CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 01222356777 8899999999999998763221 123445666666654
No 111
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.76 E-value=6.4e-08 Score=72.42 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=51.3
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++.+++.|| ++||++|+...|.+.++.+++. .+.+..|+.|. .
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~----------------------------------~ 64 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDE----------------------------------D 64 (113)
T ss_pred CeEEEEEeC-CCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCc----------------------------------C
Confidence 456777778 9999999999999999988763 57777776653 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDRE 188 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~ 188 (247)
..+.+.|++. .+|++++.+.+
T Consensus 65 ~~l~~~~~v~------~vPt~~i~~~g 85 (113)
T cd02975 65 KEKAEKYGVE------RVPTTIFLQDG 85 (113)
T ss_pred HHHHHHcCCC------cCCEEEEEeCC
Confidence 4678899999 89999999754
No 112
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.75 E-value=6e-08 Score=71.97 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCCeEEEEEEeCCC--CCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDF--TFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~--Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.|.++||.|| +.| ||+|+...|.|.++.++|.+ .+.++-|+.|.
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~-------------------------------- 71 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRAD-------------------------------- 71 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCC--------------------------------
Confidence 4678899999 997 99999999999999999974 36677776654
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
+..++..|++. .+|+++++ ++|+++....|..+
T Consensus 72 --~~~la~~f~V~------sIPTli~f-kdGk~v~~~~G~~~ 104 (111)
T cd02965 72 --EQALAARFGVL------RTPALLFF-RDGRYVGVLAGIRD 104 (111)
T ss_pred --CHHHHHHcCCC------cCCEEEEE-ECCEEEEEEeCccC
Confidence 35888999999 99998888 68999988866544
No 113
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.3e-08 Score=83.64 Aligned_cols=89 Identities=13% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+-+|||+.|| ++||++|+.-+|.|.++..+|+. .+.+.-|++|.
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~---------------------------------- 85 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDA---------------------------------- 85 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCc----------------------------------
Confidence 4569999999 99999999999999999999974 46666666653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+..+||+. .+|++|++ ++|+-+.-+.|..+ -+.+-++|+.+-
T Consensus 86 ~p~vAaqfgiq------sIPtV~af-~dGqpVdgF~G~qP----esqlr~~ld~~~ 130 (304)
T COG3118 86 EPMVAAQFGVQ------SIPTVYAF-KDGQPVDGFQGAQP----ESQLRQFLDKVL 130 (304)
T ss_pred chhHHHHhCcC------cCCeEEEe-eCCcCccccCCCCc----HHHHHHHHHHhc
Confidence 46889999999 99999999 78998877756554 234444454443
No 114
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.75 E-value=3.7e-08 Score=93.15 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=70.5
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcce
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI 154 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (247)
+..+||+++|+|| ++||++|+...+.. .+++++++ ++.++-|+.+..+
T Consensus 470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~-------------------------- 520 (571)
T PRK00293 470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN-------------------------- 520 (571)
T ss_pred HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC--------------------------
Confidence 3446899999999 99999999887764 56666764 6778777765411
Q ss_pred eEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEE--EEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 155 PLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR--QITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 155 ~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~--~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+.+.++.++|++. .+|+++++|++|+++ ..+.|.. +.+++.+.|+.++
T Consensus 521 ----~~~~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G~~----~~~~f~~~L~~~~ 570 (571)
T PRK00293 521 ----AEDVALLKHYNVL------GLPTILFFDAQGQEIPDARVTGFM----DAAAFAAHLRQLQ 570 (571)
T ss_pred ----hhhHHHHHHcCCC------CCCEEEEECCCCCCcccccccCCC----CHHHHHHHHHHhc
Confidence 1235778889998 899999999999985 3443433 3677777777654
No 115
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.72 E-value=1.1e-07 Score=71.30 Aligned_cols=69 Identities=16% Similarity=0.192 Sum_probs=53.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-C-cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-G-AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-~-~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
+++++|.|| ++||++|+...|.+.++.+++++. + +.+..|+.+. +
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--------------------------------~ 65 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--------------------------------E 65 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--------------------------------h
Confidence 479999999 999999999999999999998742 2 5555554432 1
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCC
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREG 189 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G 189 (247)
....+.+.|++. .+|+++++.++.
T Consensus 66 ~~~~~~~~~~i~------~~Pt~~lf~~~~ 89 (114)
T cd02992 66 ENVALCRDFGVT------GYPTLRYFPPFS 89 (114)
T ss_pred hhHHHHHhCCCC------CCCEEEEECCCC
Confidence 124677889998 889999996544
No 116
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.71 E-value=1.1e-07 Score=87.06 Aligned_cols=93 Identities=14% Similarity=0.228 Sum_probs=70.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
+++++||.|| ++||++|+...|.+.++.++|+..++.|+.|+.|.. .
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~--------------------------------~ 416 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD--------------------------------Q 416 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC--------------------------------c
Confidence 5789999999 999999999999999999999876788888888741 0
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.....+.|++. .+|+++++.+++. ..+.+ .+..++.+.++..|+++
T Consensus 417 ~~~~~~~~~I~------~~PTii~Fk~g~~-~~~~Y--~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 417 KEFAKQELQLG------SFPTILFFPKHSS-RPIKY--PSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cHHHHHHcCCC------ccceEEEEECCCC-CceeC--CCCCCCHHHHHHHHHhh
Confidence 11233678888 8899999965432 21111 11357789999999876
No 117
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.70 E-value=1.3e-07 Score=78.60 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=73.1
Q ss_pred EcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 76 KLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 76 ~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
.+.++.+++.+++|+ .+.|++|..+.|.|+.+.++| |+.|+.||.|... + ..|+
T Consensus 114 ~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~--------------------~--~~fp 167 (215)
T PF13728_consen 114 ALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP--------------------I--PSFP 167 (215)
T ss_pred HHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC--------------------C--cCCC
Confidence 345667889999999 889999999999999999998 8999999999611 1 1222
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEEcCCC-cEEEEEecCCCCCCCHHHHHH
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREG-IVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G-~v~~~~~~~~~~~~~~~~il~ 210 (247)
-.. .+..+.+.||+. .+|++|||++++ ++.-+..|..+ .+++++
T Consensus 168 ~~~-~~~g~~~~l~v~------~~Pal~Lv~~~~~~~~pv~~G~~s----~~~L~~ 212 (215)
T PF13728_consen 168 NPR-PDPGQAKRLGVK------VTPALFLVNPNTKKWYPVSQGFMS----LDELED 212 (215)
T ss_pred CCC-CCHHHHHHcCCC------cCCEEEEEECCCCeEEEEeeecCC----HHHHHH
Confidence 221 256788899998 899999999998 44444455544 455544
No 118
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.66 E-value=1.5e-07 Score=68.39 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=36.4
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVD 125 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d 125 (247)
+++++|.|| ++||++|+...|.+.++.+.++. ..+.+..|+.+
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 589999999 99999999999999999999875 34666666654
No 119
>PTZ00102 disulphide isomerase; Provisional
Probab=98.65 E-value=1.9e-07 Score=86.34 Aligned_cols=90 Identities=10% Similarity=0.192 Sum_probs=67.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++++++|.|| +.||++|++..|.+.++.+.+++.+ +.+..|..+
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~--------------------------------- 93 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT--------------------------------- 93 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC---------------------------------
Confidence 4778999999 9999999999999999998887543 445444433
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
.+..+.++|++. .+|+.++++.++.+ .+.|. .+.+++++.++....
T Consensus 94 -~~~~l~~~~~i~------~~Pt~~~~~~g~~~--~y~g~----~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 94 -EEMELAQEFGVR------GYPTIKFFNKGNPV--NYSGG----RTADGIVSWIKKLTG 139 (477)
T ss_pred -CCHHHHHhcCCC------cccEEEEEECCceE--EecCC----CCHHHHHHHHHHhhC
Confidence 235788899998 89999999765544 44343 346788888877643
No 120
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.62 E-value=3.6e-07 Score=73.63 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=59.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++++||.|| ++||++|+...|.|.++..+|. ++.|+-|+.+. .
T Consensus 83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~----------------------------------~ 125 (175)
T cd02987 83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASA----------------------------------T 125 (175)
T ss_pred CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccc----------------------------------h
Confidence 358999999 9999999999999999999985 68888887753 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
.+...|++. .+|+++++ ++|+++....|..
T Consensus 126 -~l~~~f~v~------~vPTllly-k~G~~v~~~vG~~ 155 (175)
T cd02987 126 -GASDEFDTD------ALPALLVY-KGGELIGNFVRVT 155 (175)
T ss_pred -hhHHhCCCC------CCCEEEEE-ECCEEEEEEechH
Confidence 456778888 88988888 6899998776544
No 121
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.58 E-value=8.9e-07 Score=62.08 Aligned_cols=74 Identities=23% Similarity=0.311 Sum_probs=58.2
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++++|.|| +.||+.|....+.++++.++ ..++.++.|+.+. .
T Consensus 10 ~~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------------~ 52 (93)
T cd02947 10 AKPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------------N 52 (93)
T ss_pred CCcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------------C
Confidence 378899999 99999999999999999887 3478888887653 2
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~ 199 (247)
..+.+.|++. .+|++++++ +|+++..+.|..
T Consensus 53 ~~~~~~~~v~------~~P~~~~~~-~g~~~~~~~g~~ 83 (93)
T cd02947 53 PELAEEYGVR------SIPTFLFFK-NGKEVDRVVGAD 83 (93)
T ss_pred hhHHHhcCcc------cccEEEEEE-CCEEEEEEecCC
Confidence 3566778887 889998885 677777765543
No 122
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.58 E-value=2.5e-07 Score=78.60 Aligned_cols=102 Identities=16% Similarity=0.300 Sum_probs=75.3
Q ss_pred cCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 77 LTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 77 l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+.++..++.+++|+ .+.||+|....|.|+.+.++| |+.+++||.|... + ..||-
T Consensus 145 i~~la~~~gL~fFy-~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~--------------------~--p~fp~ 198 (256)
T TIGR02739 145 IQQLSQSYGLFFFY-RGKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL--------------------I--PGLPN 198 (256)
T ss_pred HHHHHhceeEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC--------------------C--CCCCC
Confidence 34556789999999 899999999999999999998 8999999999711 1 12332
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.. .+...++.+|+. .+|++|+|+++ +++.-+..|..+ .+++.+.+..+
T Consensus 199 ~~-~d~gqa~~l~v~------~~Pal~Lv~~~t~~~~pv~~G~iS----~deL~~Ri~~v 247 (256)
T TIGR02739 199 SR-SDSGQAQHLGVK------YFPALYLVNPKSQKMSPLAYGFIS----QDELKERILNV 247 (256)
T ss_pred cc-CChHHHHhcCCc------cCceEEEEECCCCcEEEEeeccCC----HHHHHHHHHHH
Confidence 22 246678899998 89999999999 555555456555 45555555443
No 123
>PTZ00102 disulphide isomerase; Provisional
Probab=98.58 E-value=2.9e-07 Score=85.13 Aligned_cols=91 Identities=11% Similarity=0.111 Sum_probs=68.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
.||+++|.|| ++||++|+...|.+.++.+++++. .+.+..|+.+.
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~--------------------------------- 419 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA--------------------------------- 419 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC---------------------------------
Confidence 4889999999 999999999999999999998753 35555555432
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
+....+.|++. .+|+++++++++++...+.|. .+.+++.+.|+...
T Consensus 420 -~~~~~~~~~v~------~~Pt~~~~~~~~~~~~~~~G~----~~~~~l~~~i~~~~ 465 (477)
T PTZ00102 420 -NETPLEEFSWS------AFPTILFVKAGERTPIPYEGE----RTVEGFKEFVNKHA 465 (477)
T ss_pred -CccchhcCCCc------ccCeEEEEECCCcceeEecCc----CCHHHHHHHHHHcC
Confidence 12345677777 889999999888775455443 34688888887765
No 124
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.56 E-value=1.3e-06 Score=60.90 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=55.8
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchH
Q psy15453 85 LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164 (247)
Q Consensus 85 vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 164 (247)
.|..|| ++||++|+...+.+.++.++++. .+.++-|+.+. +.++
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~----------------------------------~~~~ 45 (82)
T TIGR00411 2 KIELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVME----------------------------------NPQK 45 (82)
T ss_pred EEEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCcc----------------------------------CHHH
Confidence 467888 99999999999999999998863 47777776642 1245
Q ss_pred HHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 165 ~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
.+.||+. .+|++++ +|+++ +.|.. +.+++.+.|+.
T Consensus 46 ~~~~~v~------~vPt~~~---~g~~~--~~G~~----~~~~l~~~l~~ 80 (82)
T TIGR00411 46 AMEYGIM------AVPAIVI---NGDVE--FIGAP----TKEELVEAIKK 80 (82)
T ss_pred HHHcCCc------cCCEEEE---CCEEE--EecCC----CHHHHHHHHHh
Confidence 6779988 8898875 56643 22322 24566666554
No 125
>PLN02309 5'-adenylylsulfate reductase
Probab=98.54 E-value=7.1e-07 Score=81.81 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
++|++||.|| ++||++|+...|.+.++.++|+..++.|+.|+.|..
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~--------------------------------- 409 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD--------------------------------- 409 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---------------------------------
Confidence 5789999999 999999999999999999999876788888887730
Q ss_pred CchHHH-HhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISR-DYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~-~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+.+ .|++. .+|+++++.++..-...+ .+..++.+.++..|+++
T Consensus 410 ~~~la~~~~~I~------~~PTil~f~~g~~~~v~Y---~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 410 QKEFAKQELQLG------SFPTILLFPKNSSRPIKY---PSEKRDVDSLLSFVNSL 456 (457)
T ss_pred chHHHHhhCCCc------eeeEEEEEeCCCCCeeec---CCCCcCHHHHHHHHHHh
Confidence 123343 58888 889999996544321111 12356789999999876
No 126
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.49 E-value=5.2e-07 Score=76.22 Aligned_cols=102 Identities=19% Similarity=0.287 Sum_probs=75.3
Q ss_pred cCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 77 LTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 77 l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+.++.+++.|++|+ .+.||+|..+.|.|+.+.++| |+.|++||.|... ...||-
T Consensus 138 i~~la~~~GL~fFy-~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~----------------------~p~fp~ 191 (248)
T PRK13703 138 IAKLAEHYGLMFFY-RGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI----------------------NPLLPD 191 (248)
T ss_pred HHHHHhcceEEEEE-CCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------------CCCCCC
Confidence 34556789999999 899999999999999999998 8999999999611 112332
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCC-cEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREG-IVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G-~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.. .+...++.+|+. .+|++|||+++. ++.-+..|..+ .+++.+.+..+
T Consensus 192 ~~-~d~gqa~~l~v~------~~PAl~Lv~~~t~~~~pv~~G~iS----~deL~~Ri~~v 240 (248)
T PRK13703 192 SR-TDQGQAQRLGVK------YFPALMLVDPKSGSVRPLSYGFIT----QDDLAKRFLNV 240 (248)
T ss_pred Cc-cChhHHHhcCCc------ccceEEEEECCCCcEEEEeeccCC----HHHHHHHHHHH
Confidence 21 234555889998 889999999996 66655556655 45666555544
No 127
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.43 E-value=2.2e-06 Score=70.13 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=58.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
++++||.|| ++||++|+...|.|.+++.+|. .+.|+-|+.+.
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~----------------------------------- 143 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ----------------------------------- 143 (192)
T ss_pred CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH-----------------------------------
Confidence 458999999 9999999999999999999985 68888876642
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
....|++. .+|+++++ ++|+++...+|..+
T Consensus 144 --~~~~~~i~------~lPTlliy-k~G~~v~~ivG~~~ 173 (192)
T cd02988 144 --CIPNYPDK------NLPTILVY-RNGDIVKQFIGLLE 173 (192)
T ss_pred --hHhhCCCC------CCCEEEEE-ECCEEEEEEeCchh
Confidence 02567777 88988888 79999988877554
No 128
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.37 E-value=3e-06 Score=77.74 Aligned_cols=90 Identities=17% Similarity=0.284 Sum_probs=67.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC--cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG--AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~--~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++++++|.|| ++||++|+...|.+.++++.+++.+ +.++.|..+.
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------------------------------- 63 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------------------------------- 63 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC--------------------------------
Confidence 4678999999 9999999999999999999988655 6666665542
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcE-EEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIV-RQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v-~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
...+.+.|++. .+|+++++ ++|+. ...+.|.. +.+++.+.++...
T Consensus 64 --~~~l~~~~~i~------~~Pt~~~~-~~g~~~~~~~~g~~----~~~~l~~~i~~~~ 109 (462)
T TIGR01130 64 --EKDLAQKYGVS------GYPTLKIF-RNGEDSVSDYNGPR----DADGIVKYMKKQS 109 (462)
T ss_pred --cHHHHHhCCCc------cccEEEEE-eCCccceeEecCCC----CHHHHHHHHHHhc
Confidence 24678889998 88988888 46665 44444533 3566677665554
No 129
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.34 E-value=2.4e-06 Score=59.22 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=27.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEE
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVG 121 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~ 121 (247)
.|.|| ++|||+|+...|.+.++.+++.. .+.++-
T Consensus 2 ~i~~~-a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~ 35 (76)
T TIGR00412 2 KIQIY-GTGCANCQMTEKNVKKAVEELGI-DAEFEK 35 (76)
T ss_pred EEEEE-CCCCcCHHHHHHHHHHHHHHcCC-CeEEEE
Confidence 47899 99999999999999999998852 244433
No 130
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.34 E-value=8.8e-06 Score=60.70 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=63.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
++|+++|+|. +.||++|....... .++.+.+.+ ++.++.++.+.++
T Consensus 16 ~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e----------------------------- 64 (114)
T cd02958 16 EKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSE----------------------------- 64 (114)
T ss_pred hCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCcc-----------------------------
Confidence 5899999999 99999999875543 233444433 4555555443311
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcC-CCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDR-EGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~-~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+...|++. ..|++++||+ +|++++...|..+ .++++..|+..
T Consensus 65 ---~~~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~~~----~~~f~~~L~~~ 110 (114)
T cd02958 65 ---GQRFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGNIT----PEDLLSQLIEF 110 (114)
T ss_pred ---HHHHHHHhCcc------CCCeEEEEeCccCcEeEEEcCCCC----HHHHHHHHHHH
Confidence 13566778887 8899999999 8999998866654 46777776654
No 131
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.33 E-value=6e-06 Score=68.68 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=57.9
Q ss_pred CCCCeEEEEEEeC---CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 80 YRGKYLVFFFYPL---DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 80 ~~gk~vvl~F~~a---~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
+++...++.|. + +||++|+...|.+.++.+++. ++++..+..|.
T Consensus 17 ~~~~~~i~~f~-~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~------------------------------ 63 (215)
T TIGR02187 17 LKNPVEIVVFT-DNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDT------------------------------ 63 (215)
T ss_pred cCCCeEEEEEc-CCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCC------------------------------
Confidence 34555667787 7 999999999999999999884 56666666664
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEE-EEecC
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQ-ITLND 198 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~-~~~~~ 198 (247)
|.+..+++.|++. .+|++++++ +|+.+. .+.|.
T Consensus 64 --~~~~~l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G~ 97 (215)
T TIGR02187 64 --PEDKEEAEKYGVE------RVPTTIILE-EGKDGGIRYTGI 97 (215)
T ss_pred --cccHHHHHHcCCC------ccCEEEEEe-CCeeeEEEEeec
Confidence 1246889999999 899998886 566653 55453
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=98.27 E-value=6.8e-06 Score=67.68 Aligned_cols=63 Identities=10% Similarity=-0.022 Sum_probs=51.7
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCc
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 162 (247)
..+|++|| |+|||+|+...+.|.++.++|. ++.|+-|+.|
T Consensus 18 g~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d------------------------------------- 57 (204)
T PTZ00062 18 GKLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA------------------------------------- 57 (204)
T ss_pred CcEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc-------------------------------------
Confidence 45789999 9999999999999999999986 5777766321
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEec
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLN 197 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~ 197 (247)
|++. .+|+++++ ++|+++....|
T Consensus 58 -----~~V~------~vPtfv~~-~~g~~i~r~~G 80 (204)
T PTZ00062 58 -----DANN------EYGVFEFY-QNSQLINSLEG 80 (204)
T ss_pred -----cCcc------cceEEEEE-ECCEEEeeeeC
Confidence 7777 88998888 58999888754
No 133
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=98.24 E-value=3e-05 Score=60.53 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=86.8
Q ss_pred ccCCCCCCceeee----eecC---CceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHH-HHhcCcEEEEE-eC
Q psy15453 54 VVMKPAPYWKGTA----VVDG---NIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE-FHKIGAEVVGV-SV 124 (247)
Q Consensus 54 ~~G~~~P~f~l~~----~~d~---~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~-~~~~~~~vl~V-s~ 124 (247)
..|+++|...+.+ +.++ ..+..+..++.||+-||.-. |--...=..-.|-+..+.+. |....++..+| +.
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~i-AGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~ 80 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHI-AGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINL 80 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEe-ccCCchhHhhHHHHHHHHHcCCCccceeEEEEEec
Confidence 4577777777522 0111 23455667788998777777 44333323333434444333 44445776666 45
Q ss_pred CC-----hHhHHHHHHHhhccccccccCCCCCccee-EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecC
Q psy15453 125 DS-----HFTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLND 198 (247)
Q Consensus 125 d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~ 198 (247)
|. ..-.+..+++.++ .++|. ++.|.++.+.+.|++..+ .-+.+|+|++|+|+++..|.
T Consensus 81 dDAi~gt~~fVrss~e~~kk-----------~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~ 144 (160)
T PF09695_consen 81 DDAIWGTGGFVRSSAEDSKK-----------EFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGA 144 (160)
T ss_pred ccccccchHHHHHHHHHhhh-----------hCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCC
Confidence 43 1223333443332 45675 678999999999999843 35688999999999999887
Q ss_pred CCCCCCHHHHHHHHH
Q psy15453 199 LPVGRSVEETLRLVR 213 (247)
Q Consensus 199 ~~~~~~~~~il~~l~ 213 (247)
++.. ++++++..|+
T Consensus 145 Ls~~-Ev~qVi~Ll~ 158 (160)
T PF09695_consen 145 LSPA-EVQQVIALLK 158 (160)
T ss_pred CCHH-HHHHHHHHHh
Confidence 7633 4677766665
No 134
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.20 E-value=1.5e-05 Score=60.80 Aligned_cols=92 Identities=12% Similarity=0.071 Sum_probs=55.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHH--HHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALN--EKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~--~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.||+++|+|. +.||++|+..-...- .-..++-++++.+|-+..|..+ . +..
T Consensus 22 ~~Kpvmv~f~-sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td----------~-----------~~~----- 74 (130)
T cd02960 22 SNKPLMVIHH-LEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTD----------K-----------NLS----- 74 (130)
T ss_pred CCCeEEEEEe-CCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCC----------C-----------CcC-----
Confidence 5899999999 999999998877642 2222322234433333333210 0 010
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC------CCCHHHHHHHHHh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV------GRSVEETLRLVRA 214 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~------~~~~~~il~~l~~ 214 (247)
+ .| . .+|+++++|++|+++....|..+. ..+++.+++..+.
T Consensus 75 -~-------~g-~------~vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~ 121 (130)
T cd02960 75 -P-------DG-Q------YVPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKK 121 (130)
T ss_pred -c-------cC-c------ccCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHH
Confidence 0 11 2 679999999999999887655432 3445566555443
No 135
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.18 E-value=0.00012 Score=59.98 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=85.6
Q ss_pred CceeeeeecCCceeEEcCCC-CCCeEE--EEEEe----CCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 61 YWKGTAVVDGNIKEIKLTDY-RGKYLV--FFFYP----LDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 61 ~f~l~~~~d~~G~~v~l~~~-~gk~vv--l~F~~----a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
++.+ ...+| +++|.++ .||-.| ..|.+ ...|+.|...+..++-....+..+++.+++||..+.+.+.+|
T Consensus 48 ~Y~F---~g~~G-~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~af 123 (211)
T PF05988_consen 48 DYVF---DGPDG-PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAF 123 (211)
T ss_pred CeEE---eCCCC-cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHH
Confidence 4554 23344 4999986 677333 33321 478999999999998888888888999999999999999998
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCC-CccceeEEEEcCCCcEEEEE
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK-GHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~-g~~~p~~~lId~~G~v~~~~ 195 (247)
.+. . |++||.++..+..+...|++...+. ...--+.|+-|. |+|-..+
T Consensus 124 k~r----------m---GW~~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg-~~VfhTy 172 (211)
T PF05988_consen 124 KRR----------M---GWTFPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDG-GRVFHTY 172 (211)
T ss_pred HHh----------c---CCCceEEEcCCCcccccccceeccCCCceeEEEEEEcC-CEEEEEe
Confidence 884 3 5679999988888999999854332 122225566654 7888776
No 136
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=98.17 E-value=2.5e-05 Score=64.72 Aligned_cols=119 Identities=15% Similarity=0.196 Sum_probs=85.6
Q ss_pred CCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC---cEEEEEeCCChHhHHHH
Q psy15453 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG---AEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 57 ~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~---~~vl~Vs~d~~~~~~~~ 133 (247)
.+.|.+++ .| .-.+.+.+|+++||.+. -.+|..|..++.+|..|..++.+.| |.++.|+.-...+...+
T Consensus 8 ~~~p~W~i------~~-~~pm~~~~G~VtvVALL-~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~ 79 (238)
T PF04592_consen 8 KPPPPWKI------GG-QDPMLNSLGHVTVVALL-QASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY 79 (238)
T ss_pred CCCCCceE------CC-chHhhhcCCcEEeeeeh-hhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH
Confidence 56788885 22 34466778999999999 7799999999999999999998664 67888887554333322
Q ss_pred HHHhhccccccccCCCCCcceeEEe-c-CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLS-D-LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~-D-~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..-..+ ....++++. | .+.+++..++..-. -++|+|+-|++.+...-+.+
T Consensus 80 ~~l~~r----------~~~~ipVyqq~~~q~dvW~~L~G~kd-------D~~iyDRCGrL~~~i~~P~S 131 (238)
T PF04592_consen 80 WELKRR----------VSEHIPVYQQDENQPDVWELLNGSKD-------DFLIYDRCGRLTYHIPLPYS 131 (238)
T ss_pred HHHHHh----------CCCCCceecCCccccCHHHHhCCCcC-------cEEEEeccCcEEEEecCcHH
Confidence 111111 034588886 3 34789999988633 59999999999998744433
No 137
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.16 E-value=1.7e-05 Score=53.16 Aligned_cols=38 Identities=16% Similarity=0.053 Sum_probs=29.7
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 85 LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 85 vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
.|..|+ ++|||+|+...+.|+++..++. ++.+.-|+.+
T Consensus 2 ~v~~f~-~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFV-SPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEE-CCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 467788 9999999999999998876542 5777776654
No 138
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.10 E-value=2.4e-05 Score=58.37 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccC----------
Q psy15453 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED---------- 174 (247)
Q Consensus 105 l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~---------- 174 (247)
|.+..+++++.|+.+|+|+..+.+..++|.+.. +++++++.|+++.+.+.+|+....
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~ 68 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALW 68 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHH
Confidence 567788888899999999999987799988742 689999999999999999886411
Q ss_pred ----------------------CCccceeEEEEcCCCcEEEEEe
Q psy15453 175 ----------------------KGHSLRGLFIIDREGIVRQITL 196 (247)
Q Consensus 175 ----------------------~g~~~p~~~lId~~G~v~~~~~ 196 (247)
++.....+||+|++|+|++.|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 69 SGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 0123456899999999999884
No 139
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.07 E-value=2.4e-05 Score=55.89 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 79 DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 79 ~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
++++.+.+..|+ +.||++|+...+.++++..++. ++.+..+..+.
T Consensus 9 ~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~-------------------------------- 53 (89)
T cd03026 9 RLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL-------------------------------- 53 (89)
T ss_pred hcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh--------------------------------
Confidence 456666777777 9999999999999999987764 57776665542
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
..++++.||+. .+|++++ +|+++..
T Consensus 54 --~~e~a~~~~V~------~vPt~vi---dG~~~~~ 78 (89)
T cd03026 54 --FQDEVEERGIM------SVPAIFL---NGELFGF 78 (89)
T ss_pred --CHHHHHHcCCc------cCCEEEE---CCEEEEe
Confidence 14677899999 8998864 6887764
No 140
>KOG0908|consensus
Probab=98.06 E-value=2.9e-05 Score=64.79 Aligned_cols=71 Identities=20% Similarity=0.322 Sum_probs=57.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
-+|.+++.|. |+||++|++-.|.+..+..+|. +..|+-|.+|.
T Consensus 20 g~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~---------------------------------- 62 (288)
T KOG0908|consen 20 GGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE---------------------------------- 62 (288)
T ss_pred CceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH----------------------------------
Confidence 4689999999 9999999999999999999996 78999888764
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
-+..+..+|+. .+|++++. ++|+=+...
T Consensus 63 c~~taa~~gV~------amPTFiff-~ng~kid~~ 90 (288)
T KOG0908|consen 63 CRGTAATNGVN------AMPTFIFF-RNGVKIDQI 90 (288)
T ss_pred hhchhhhcCcc------cCceEEEE-ecCeEeeee
Confidence 13455678888 88988877 566555554
No 141
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.03 E-value=2.9e-05 Score=71.24 Aligned_cols=90 Identities=9% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
.++.++|.|| ++||++|+...|.+.++.+.++.. ++.+..|+.+..
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n------------------------------- 410 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN------------------------------- 410 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC-------------------------------
Confidence 3789999999 999999999999999999999852 577777766531
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEE-EEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVR-QITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~-~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
.+.. |++. .+|+++++.+++++. ..+.| ..+.+.+++.|+....
T Consensus 411 ----~~~~-~~i~------~~Pt~~~~~~~~~~~~~~~~g----~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 411 ----DVPP-FEVE------GFPTIKFVPAGKKSEPVPYDG----DRTLEDFSKFIAKHAT 455 (462)
T ss_pred ----ccCC-CCcc------ccCEEEEEeCCCCcCceEecC----cCCHHHHHHHHHhcCC
Confidence 0111 6666 789999997766531 22223 3447888888876543
No 142
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.00 E-value=3.6e-05 Score=55.85 Aligned_cols=91 Identities=21% Similarity=0.166 Sum_probs=62.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
.|+++++.|+ +.||++|....+.+.++.++|+. .+.++.|+.|.
T Consensus 11 ~~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~---------------------------------- 54 (103)
T cd02982 11 SGKPLLVLFY-NKDDSESEELRERFKEVAKKFKG-KLLFVVVDADD---------------------------------- 54 (103)
T ss_pred cCCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHh----------------------------------
Confidence 3789999999 99999999999999999999984 47777776653
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCC-CcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~-G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
...+.+.||+... ..|++++++.+ |+.... .......+++.+.|+.+
T Consensus 55 ~~~~~~~~~i~~~----~~P~~~~~~~~~~~k~~~----~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 55 FGRHLEYFGLKEE----DLPVIAIINLSDGKKYLM----PEEELTAESLEEFVEDF 102 (103)
T ss_pred hHHHHHHcCCChh----hCCEEEEEecccccccCC----CccccCHHHHHHHHHhh
Confidence 1245566666532 57888888763 432211 11112456666666543
No 143
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.00 E-value=4.2e-05 Score=48.94 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=33.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
++.|| +.||+.|....+.+.++ ++...++.++.++.+...
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 40 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDP 40 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCCh
Confidence 47888 99999999999999998 455568999999988643
No 144
>PHA02125 thioredoxin-like protein
Probab=97.99 E-value=8.9e-05 Score=51.03 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=46.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~ 165 (247)
++.|+ ++||++|+...|.|.++. +.++-|+. |...++.
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~~~-------~~~~~vd~----------------------------------~~~~~l~ 39 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLANVE-------YTYVDVDT----------------------------------DEGVELT 39 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHHHh-------heEEeeeC----------------------------------CCCHHHH
Confidence 67888 999999999989876431 22322222 2346788
Q ss_pred HHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 166 ~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
+.|++. .+|+++ +|+.+....|. .++..++.+.|
T Consensus 40 ~~~~v~------~~PT~~----~g~~~~~~~G~---~~~~~~l~~~~ 73 (75)
T PHA02125 40 AKHHIR------SLPTLV----NTSTLDRFTGV---PRNVAELKEKL 73 (75)
T ss_pred HHcCCc------eeCeEE----CCEEEEEEeCC---CCcHHHHHHHh
Confidence 999999 889765 56666555443 33455555543
No 145
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.93 E-value=1.9e-05 Score=60.45 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 78 TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 78 ~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
..+..+..++.|. .+|||.|...+|.|.++.+... ++.+=.|..|.. .+..
T Consensus 37 ~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~---~el~----------------------- 87 (129)
T PF14595_consen 37 KSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDEN---KELM----------------------- 87 (129)
T ss_dssp HT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHH---HHHT-----------------------
T ss_pred HhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCC---hhHH-----------------------
Confidence 3445668889999 9999999999999999998865 566655555431 1111
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
++.+. .|.. .+|+++++|.+|+.+..+
T Consensus 88 ---~~~lt--~g~~------~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 88 ---DQYLT--NGGR------SIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp ---TTTTT---SS--------SSEEEEE-TT--EEEEE
T ss_pred ---HHHHh--CCCe------ecCEEEEEcCCCCEeEEE
Confidence 11111 3444 899999999999999887
No 146
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.87 E-value=3.9e-05 Score=55.40 Aligned_cols=48 Identities=31% Similarity=0.508 Sum_probs=40.9
Q ss_pred EcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 76 KLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 76 ~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
....++++++++.|| +.||++|+..+|.+.++.+++.. .+.++.|...
T Consensus 26 ~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 26 SLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred ehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 334445889999999 99999999999999999999975 6888888875
No 147
>smart00594 UAS UAS domain.
Probab=97.84 E-value=0.00016 Score=54.74 Aligned_cols=92 Identities=13% Similarity=0.006 Sum_probs=58.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.+|.++|+|+ +.||+.|....... .++.+-+ ++++.++.++.+.++
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~e----------------------------- 74 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSE----------------------------- 74 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChh-----------------------------
Confidence 5899999999 99999999876653 2233333 335555555544321
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCC-cEEEEEecCCCCCCCHHHHHHHH
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREG-IVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G-~v~~~~~~~~~~~~~~~~il~~l 212 (247)
...+...|++. ..|+..++|++| .......+...-..+.++++..|
T Consensus 75 ---g~~l~~~~~~~------~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 75 ---GQRVSQFYKLD------SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ---HHHHHHhcCcC------CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 24677788888 889999999997 11111122233333467777655
No 148
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.83 E-value=0.00021 Score=59.39 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=51.8
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCch
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHE 163 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~ 163 (247)
..++.|| ++||++|+...+.++++..++. .+.+.-|..+ ....
T Consensus 135 v~I~~F~-a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~----------------------------------~~~~ 177 (215)
T TIGR02187 135 VRIEVFV-TPTCPYCPYAVLMAHKFALAND--KILGEMIEAN----------------------------------ENPD 177 (215)
T ss_pred cEEEEEE-CCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC----------------------------------CCHH
Confidence 4555588 9999999998888888776642 4555444433 2357
Q ss_pred HHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 164 ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 164 ~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
+.+.|++. .+|++++. .+|+. +.|..+ -+++.+.|+
T Consensus 178 ~~~~~~V~------~vPtl~i~-~~~~~---~~G~~~----~~~l~~~l~ 213 (215)
T TIGR02187 178 LAEKYGVM------SVPKIVIN-KGVEE---FVGAYP----EEQFLEYIL 213 (215)
T ss_pred HHHHhCCc------cCCEEEEe-cCCEE---EECCCC----HHHHHHHHH
Confidence 77889999 89987775 56653 334322 355555554
No 149
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.77 E-value=0.0003 Score=59.86 Aligned_cols=146 Identities=14% Similarity=0.239 Sum_probs=87.0
Q ss_pred CCCCCCceeeeeecCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hc--CcEEEEEeCCChHhHH
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KI--GAEVVGVSVDSHFTHR 131 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~--~~~vl~Vs~d~~~~~~ 131 (247)
.-.+|+|...++ .|+.+++.+. +||+.||..+...|-..|....-. ...++|. .. .+++|-|+.-+.-- +
T Consensus 98 AlyFP~l~g~tL---~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~~-k 171 (252)
T PF05176_consen 98 ALYFPNLQGKTL---AGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENWL-K 171 (252)
T ss_pred CCcCCCCccccC---CCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHHH-H
Confidence 467999999776 7788888765 799988888756665555554333 2333443 33 68999998865322 2
Q ss_pred HHHHHhhccccccccCCCC-CcceeEEecC--CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHH
Q psy15453 132 AWINSLKKDNSLKKDNRLD-KLKIPLLSDL--THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEET 208 (247)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~--~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~i 208 (247)
.|+-..-. ..+-+..... ...|-+..+. ...+.+.+|+.+. .+-.+||||++|+|++...|... ..+++.+
T Consensus 172 ~~l~~~~~-~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~----~~GYvyLVD~~grIRWagsG~At-~~E~~~L 245 (252)
T PF05176_consen 172 SWLVKLFM-GSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNS----YVGYVYLVDPNGRIRWAGSGPAT-PEELESL 245 (252)
T ss_pred HHHHHHHh-hhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCC----CcCeEEEECCCCeEEeCccCCCC-HHHHHHH
Confidence 33222210 0000011110 1234333333 4588899999865 56779999999999999755443 3334555
Q ss_pred HHHHH
Q psy15453 209 LRLVR 213 (247)
Q Consensus 209 l~~l~ 213 (247)
.+.++
T Consensus 246 ~k~~~ 250 (252)
T PF05176_consen 246 WKCVK 250 (252)
T ss_pred HHHHh
Confidence 44444
No 150
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=97.71 E-value=1e-05 Score=48.70 Aligned_cols=25 Identities=48% Similarity=0.998 Sum_probs=21.7
Q ss_pred hhhcccccCCccCCCCcCCCccccC
Q psy15453 214 AFQYTDEHGEACPSGWQPGQRTISN 238 (247)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (247)
+||.++++++.||+||+||+++|++
T Consensus 1 ALQ~~d~~~v~tPanW~pGd~~ivp 25 (40)
T PF10417_consen 1 ALQFTDKHGVATPANWKPGDDVIVP 25 (40)
T ss_dssp HHHHHHHHSSBBCTTTCTTSGEBE-
T ss_pred CceehhhhCcccCcCCCCCCCeEcC
Confidence 4778889999999999999999943
No 151
>KOG4498|consensus
Probab=97.70 E-value=0.00035 Score=55.94 Aligned_cols=132 Identities=15% Similarity=0.214 Sum_probs=93.2
Q ss_pred cCCceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccC
Q psy15453 69 DGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDN 147 (247)
Q Consensus 69 d~~G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 147 (247)
+..|+.|...++ +.+..+|.|.+=..|-.|+.+...|.++.+-++..|+.+++|-..+....+.+.++-
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~---------- 105 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT---------- 105 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc----------
Confidence 458889999988 455788999989999999999999999988888899999999775544444444421
Q ss_pred CCCCcceeEEecCCchHHHHhCCcc----------------------cC----CCccceeEEEEcCCCcEEEEEec-CCC
Q psy15453 148 RLDKLKIPLLSDLTHEISRDYGVYL----------------------ED----KGHSLRGLFIIDREGIVRQITLN-DLP 200 (247)
Q Consensus 148 ~~~~~~~~~l~D~~~~~~~~~~~~~----------------------~~----~g~~~p~~~lId~~G~v~~~~~~-~~~ 200 (247)
.+.-.++.|++..+.+.++... +. .+...-..++|.+.|+|.+.+.. +..
T Consensus 106 ---~f~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~g 182 (197)
T KOG4498|consen 106 ---YFSGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETG 182 (197)
T ss_pred ---CcceeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCC
Confidence 2333667777655544443322 11 12234558899998899998853 334
Q ss_pred CCCCHHHHHHHHH
Q psy15453 201 VGRSVEETLRLVR 213 (247)
Q Consensus 201 ~~~~~~~il~~l~ 213 (247)
+..+++++++.+.
T Consensus 183 D~~~i~~Vl~v~~ 195 (197)
T KOG4498|consen 183 DHVPIDSVLQVVG 195 (197)
T ss_pred CCcCHHHHHHHhh
Confidence 6667888887664
No 152
>KOG0190|consensus
Probab=97.58 E-value=0.00023 Score=65.52 Aligned_cols=93 Identities=17% Similarity=0.233 Sum_probs=68.0
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
...+++-|| |.||++|++.+|.+.+..+.+++.+-.+--.-+|-. .+
T Consensus 42 ~~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--------------------------------~~ 88 (493)
T KOG0190|consen 42 HEFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--------------------------------EE 88 (493)
T ss_pred CceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--------------------------------hh
Confidence 457889999 999999999999999999999876322222222221 22
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcc
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYT 218 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 218 (247)
+.++.+|++. ..|++-+. ++|+....+.| .+..+.|+.+|+.-...
T Consensus 89 ~~~~~~y~v~------gyPTlkiF-rnG~~~~~Y~G----~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 89 SDLASKYEVR------GYPTLKIF-RNGRSAQDYNG----PREADGIVKWLKKQSGP 134 (493)
T ss_pred hhhHhhhcCC------CCCeEEEE-ecCCcceeccC----cccHHHHHHHHHhccCC
Confidence 6788999999 88987777 78987444323 45579999999776543
No 153
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.52 E-value=0.00067 Score=47.37 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChH
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
.||+++|.|. +.||+.|+..-..+ .++.+.+. +++..+-|..+...
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDED 64 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCC
Confidence 4899999999 99999999987776 33444344 47888888886644
No 154
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0096 Score=46.51 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=62.4
Q ss_pred CCCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeE
Q psy15453 80 YRGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL 156 (247)
Q Consensus 80 ~~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (247)
..+|+.++.|- ...|++|...=..+ .++++-+.+ ++.++.+.........- .. +.. .
T Consensus 40 ~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f-------------~~---g~k--e 99 (182)
T COG2143 40 PNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLF-------------KV---GDK--E 99 (182)
T ss_pred ccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEe-------------ec---Cce--e
Confidence 35899999999 99999998664433 445555543 67777776543111100 00 111 0
Q ss_pred EecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 157 LSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 157 l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..-...++++.|++. .+|++++.|++|+-+....|-.+
T Consensus 100 e~~s~~ELa~kf~vr------stPtfvFfdk~Gk~Il~lPGY~p 137 (182)
T COG2143 100 EKMSTEELAQKFAVR------STPTFVFFDKTGKTILELPGYMP 137 (182)
T ss_pred eeecHHHHHHHhccc------cCceEEEEcCCCCEEEecCCCCC
Confidence 111236899999999 99999999999998877655554
No 155
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.014 Score=47.96 Aligned_cols=89 Identities=16% Similarity=0.153 Sum_probs=69.7
Q ss_pred CceeEEcCCC-CCCeEEE--EEEe----CCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccc
Q psy15453 71 NIKEIKLTDY-RGKYLVF--FFYP----LDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSL 143 (247)
Q Consensus 71 ~G~~v~l~~~-~gk~vvl--~F~~----a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~ 143 (247)
...+.+|.++ .||-.|| .|++ ...||.|...+..+.-....+..+++.+++||.-+.+++..+.+
T Consensus 60 ~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~-------- 131 (247)
T COG4312 60 ENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKR-------- 131 (247)
T ss_pred CCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHH--------
Confidence 3347888886 6763333 3432 45799999999999888888888899999999999888888777
Q ss_pred cccCCCCCcceeEEecCCchHHHHhCCcc
Q psy15453 144 KKDNRLDKLKIPLLSDLTHEISRDYGVYL 172 (247)
Q Consensus 144 ~~~~~~~~~~~~~l~D~~~~~~~~~~~~~ 172 (247)
++ |+.|+.++..+..+.+.|++..
T Consensus 132 --rm---GW~f~w~Ss~~s~Fn~Df~vsf 155 (247)
T COG4312 132 --RM---GWQFPWVSSTDSDFNRDFQVSF 155 (247)
T ss_pred --hc---CCcceeEeccCccccccccccc
Confidence 34 5679999988888999997743
No 156
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.91 E-value=0.0036 Score=47.07 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=49.4
Q ss_pred CCCeEEEEEEeC------CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcce
Q psy15453 81 RGKYLVFFFYPL------DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI 154 (247)
Q Consensus 81 ~gk~vvl~F~~a------~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (247)
.|++++|.|.-+ +|||.|+...|.+++...... .+..+|.|.+.+. ..|.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r---~~Wk-------------------- 73 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR---PEWK-------------------- 73 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H---HHHC--------------------
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH---HHhC--------------------
Confidence 467888888722 499999999999999888754 3788888887641 3332
Q ss_pred eEEecCCchHHH--HhCCcccCCCccceeEEEEcCCCcEE
Q psy15453 155 PLLSDLTHEISR--DYGVYLEDKGHSLRGLFIIDREGIVR 192 (247)
Q Consensus 155 ~~l~D~~~~~~~--~~~~~~~~~g~~~p~~~lId~~G~v~ 192 (247)
|++..+.+ .+++. .+|+.+-.+..+++.
T Consensus 74 ----dp~n~fR~~p~~~l~------~IPTLi~~~~~~rL~ 103 (119)
T PF06110_consen 74 ----DPNNPFRTDPDLKLK------GIPTLIRWETGERLV 103 (119)
T ss_dssp -----TTSHHHH--CC---------SSSEEEECTSS-EEE
T ss_pred ----CCCCCceEcceeeee------ecceEEEECCCCccc
Confidence 23333333 68888 899999998765533
No 157
>KOG1731|consensus
Probab=96.76 E-value=0.0017 Score=60.28 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=49.8
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc-C-cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI-G-AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~-~-~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
|..+|-|+ ++||++|++..|.+.++...+.+= . +.|-+|+.-. +.
T Consensus 58 ~~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~--------------------------------~~ 104 (606)
T KOG1731|consen 58 KAKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD--------------------------------EE 104 (606)
T ss_pred hhHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc--------------------------------hh
Confidence 45689999 999999999999999998887632 2 4454555532 12
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCC
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDRE 188 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~ 188 (247)
+..+.+.|++. ..|+....-++
T Consensus 105 N~~lCRef~V~------~~Ptlryf~~~ 126 (606)
T KOG1731|consen 105 NVKLCREFSVS------GYPTLRYFPPD 126 (606)
T ss_pred hhhhHhhcCCC------CCceeeecCCc
Confidence 45788888888 77887777666
No 158
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.75 E-value=0.0057 Score=41.48 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=24.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|| ++|||+|++..+.|.++ ++.+-.|+.+.
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~ 34 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEE 34 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcC
Confidence 56788 99999999988877544 55555566554
No 159
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=96.72 E-value=0.0093 Score=46.21 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=43.2
Q ss_pred cce-eEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 152 LKI-PLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 152 ~~~-~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.+| .++.|..+....+|++..++ .+.+++|++|+|.++..|.++ ..++.+++..|..+
T Consensus 124 ~pwSq~vlD~~gvak~AWqL~e~~-----SaivVlDk~G~VkfvkeGaLt-~aevQ~Vi~ll~~l 182 (184)
T COG3054 124 YPWSQFVLDSNGVAKNAWQLKEES-----SAVVVLDKDGRVKFVKEGALT-QAEVQQVIDLLQKL 182 (184)
T ss_pred CCceeeEEccchhhhhhhcccccc-----ceEEEEcCCCcEEEEecCCcc-HHHHHHHHHHHHHh
Confidence 455 56678888555589987542 578999999999999977775 44577888777665
No 160
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=96.63 E-value=0.0091 Score=44.87 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=74.6
Q ss_pred cCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCccee
Q psy15453 77 LTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP 155 (247)
Q Consensus 77 l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (247)
|+++++| =+||+|-|..--+.=..++..|++....+.++++.++.|..+..... ...
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~----------------------~~~ 60 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSP----------------------GKP 60 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccc----------------------cCc
Confidence 5677776 34566665566667788899999988899999999999865542210 000
Q ss_pred EEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 156 LLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 156 ~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.-......+.+.|++.. ..-+++||++||.+...+.. ..+.+++.+.|++.+
T Consensus 61 ~~~~~~~~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~----p~~~~~lf~~ID~MP 112 (118)
T PF13778_consen 61 LSPEDIQALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPE----PIDPEELFDTIDAMP 112 (118)
T ss_pred CCHHHHHHHHHHhCCCC-----CceEEEEEeCCCcEEEecCC----CCCHHHHHHHHhCCc
Confidence 00011257788888762 23579999999999988533 335799999998875
No 161
>KOG0190|consensus
Probab=96.59 E-value=0.0018 Score=59.81 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=35.1
Q ss_pred ceeEEcCCC-CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc
Q psy15453 72 IKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115 (247)
Q Consensus 72 G~~v~l~~~-~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~ 115 (247)
|+.++..-+ .+|-++|-|+ |.||++|++..|.+++|.+.|++.
T Consensus 373 gknfd~iv~de~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 373 GKNFDDIVLDEGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred ecCHHHHhhccccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 344444333 3788999999 999999999999999999999963
No 162
>KOG0191|consensus
Probab=96.53 E-value=0.016 Score=52.37 Aligned_cols=86 Identities=12% Similarity=0.160 Sum_probs=59.5
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++.++.|| ++||++|.+..|...++...++. .+.+..|..+ ..
T Consensus 47 ~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~----------------------------------~~ 90 (383)
T KOG0191|consen 47 DSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCD----------------------------------EH 90 (383)
T ss_pred CCceEEEEE-CCCCcchhhhchHHHHHHHHhcC-ceEEEEeCch----------------------------------hh
Confidence 578999999 99999999999999999988874 2333333332 23
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+.+.|++. ..|+..++.++..+.... ...+.+.+...+..
T Consensus 91 ~~~~~~y~i~------gfPtl~~f~~~~~~~~~~-----~~~~~~~~~~~~~~ 132 (383)
T KOG0191|consen 91 KDLCEKYGIQ------GFPTLKVFRPGKKPIDYS-----GPRNAESLAEFLIK 132 (383)
T ss_pred HHHHHhcCCc------cCcEEEEEcCCCceeecc-----CcccHHHHHHHHHH
Confidence 5777888888 789888887762333222 14455666665533
No 163
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.51 E-value=0.027 Score=42.14 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=60.9
Q ss_pred CCCeEEEEEEeCC----CCCCcHHHH--HHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcce
Q psy15453 81 RGKYLVFFFYPLD----FTFVCPTEV--LALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI 154 (247)
Q Consensus 81 ~gk~vvl~F~~a~----~Cp~C~~~~--~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (247)
.+|.++|++. +. ||..|+..+ |.+.+.. +.++.+.+.+...++
T Consensus 16 e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~l----n~~fv~w~~dv~~~e-------------------------- 64 (116)
T cd02991 16 ELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYI----NTRMLFWACSVAKPE-------------------------- 64 (116)
T ss_pred hCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHH----HcCEEEEEEecCChH--------------------------
Confidence 5899999999 88 788887664 3333332 335666666665422
Q ss_pred eEEecCCchHHHHhCCcccCCCccceeEEEE---cCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 155 PLLSDLTHEISRDYGVYLEDKGHSLRGLFII---DREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 155 ~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lI---d~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..+++..+++. ..|...+| +.+.+|+....|..+ .++++..|+.+.
T Consensus 65 ------g~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G~~~----~~~ll~~L~~~~ 113 (116)
T cd02991 65 ------GYRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEGLIQ----PEDLINRLTFIM 113 (116)
T ss_pred ------HHHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeCCCC----HHHHHHHHHHHH
Confidence 15778888888 88999999 666667777656543 678887776653
No 164
>KOG0912|consensus
Probab=96.32 E-value=0.017 Score=49.89 Aligned_cols=91 Identities=22% Similarity=0.312 Sum_probs=66.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc---CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI---GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~---~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
...++|+|+ |.||+..+..+|.+.+.+++++++ |-.|.| ++| +
T Consensus 13 ~elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg-~VD--------------------------------c 58 (375)
T KOG0912|consen 13 NELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG-KVD--------------------------------C 58 (375)
T ss_pred ceEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE-Ecc--------------------------------c
Confidence 468899999 999999999999999999988853 222222 232 2
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
|.+..++.+|.+. .+|+.=|+ .+|.+....+ -..++++.+++.|+...
T Consensus 59 d~e~~ia~ky~I~------KyPTlKvf-rnG~~~~rEY---Rg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 59 DKEDDIADKYHIN------KYPTLKVF-RNGEMMKREY---RGQRSVEALIEFIEKQL 106 (375)
T ss_pred chhhHHhhhhccc------cCceeeee-eccchhhhhh---ccchhHHHHHHHHHHHh
Confidence 3346788899888 88988877 6888887542 23556788887776543
No 165
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.30 E-value=0.011 Score=40.78 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=27.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|+ ++|||+|....+.|.++. +. ..+.++-|+.+.
T Consensus 1 V~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~ 37 (84)
T TIGR02180 1 VVVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLS 37 (84)
T ss_pred CEEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCC
Confidence 46677 999999999999998875 21 126677666653
No 166
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.26 E-value=0.018 Score=39.55 Aligned_cols=72 Identities=33% Similarity=0.482 Sum_probs=44.1
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHh
Q psy15453 89 FYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDY 168 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 168 (247)
++ +.+||.|+.....++++..++ ++.+=.+... ...++ ..|
T Consensus 5 v~-~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~----------------------------------~~~~~-~~y 45 (76)
T PF13192_consen 5 VF-SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIE----------------------------------DFEEI-EKY 45 (76)
T ss_dssp EE-CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETT----------------------------------THHHH-HHT
T ss_pred Ee-CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEcc----------------------------------CHHHH-HHc
Confidence 35 777999998888888887776 3444222211 01344 889
Q ss_pred CCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 169 GVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 169 ~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
|+. .+|++ +|| |++++. |..+ +.+++.++|+
T Consensus 46 gv~------~vPal-vIn--g~~~~~--G~~p---~~~el~~~l~ 76 (76)
T PF13192_consen 46 GVM------SVPAL-VIN--GKVVFV--GRVP---SKEELKELLE 76 (76)
T ss_dssp T-S------SSSEE-EET--TEEEEE--SS-----HHHHHHHHHH
T ss_pred CCC------CCCEE-EEC--CEEEEE--ecCC---CHHHHHHHhC
Confidence 999 89988 664 888755 4332 3455555543
No 167
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.25 E-value=0.028 Score=37.35 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=24.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|+ ++|||+|+...+.|.+ .++.+..++.+.
T Consensus 2 i~lf~-~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 2 VKVYT-TPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEEEc-CCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 44566 9999999998776654 478888777764
No 168
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.17 E-value=0.086 Score=41.84 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=47.5
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHH-HHH--HHHHHHHhcCcEEEEEeCCC--hHhHHHHHHHhhccccccccCCC
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVL-ALN--EKIDEFHKIGAEVVGVSVDS--HFTHRAWINSLKKDNSLKKDNRL 149 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~-~l~--~l~~~~~~~~~~vl~Vs~d~--~~~~~~~~~~~~~~~~~~~~~~~ 149 (247)
+....-.+|+++|.+. ++||..|..+.. .++ ++.+.+. -.||.|-+|. ..++......
T Consensus 30 ~~~Ak~e~KpIfl~ig-~~~C~wChvM~~esf~d~eVa~~lN---~~FI~VkvDree~Pdid~~y~~------------- 92 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIG-YSWCHWCHVMERESFSDPEVAEYLN---RNFIPVKVDREERPDIDKIYMN------------- 92 (163)
T ss_dssp HHHHHHHT--EEEEEE--TT-HHHHHHHHHTTT-HHHHHHHH---HH-EEEEEETTT-HHHHHHHHH-------------
T ss_pred HHHHHhcCCcEEEEEE-ecCCcchhhhcccCcCCHHHHHHHh---CCEEEEEeccccCccHHHHHHH-------------
Confidence 3334445899999999 999999997654 221 2222221 2344444443 2222111110
Q ss_pred CCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCC----CCCHHHHHHHHHhh
Q psy15453 150 DKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPV----GRSVEETLRLVRAF 215 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~----~~~~~~il~~l~~l 215 (247)
......|.. +.|.+++++++|+..+...+..+. .....++++.|..+
T Consensus 93 -------------~~~~~~~~g------GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 93 -------------AVQAMSGSG------GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp -------------HHHHHHS---------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHH
T ss_pred -------------HHHHhcCCC------CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHH
Confidence 011111444 679999999999999876332221 23455666555443
No 169
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.17 E-value=0.069 Score=45.51 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=24.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHH
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~ 111 (247)
.+|.+|++|. -..||+|++....+.++.+.
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhhc
Confidence 3567888888 99999999999998876543
No 170
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.12 E-value=0.053 Score=45.64 Aligned_cols=115 Identities=12% Similarity=0.138 Sum_probs=61.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE--eC---CCh--Hh-HHHHHHHhhccccc---cccCCC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV--SV---DSH--FT-HRAWINSLKKDNSL---KKDNRL 149 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V--s~---d~~--~~-~~~~~~~~~~~~~~---~~~~~~ 149 (247)
.||.+|+.|. -..||+|++..+.+.++.+ .++.|..+ .. .+. .. ..-|... ++.+.+ ......
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~-d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAA-DRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCC-CHHHHHHHHHcCCCC
Confidence 4788888898 9999999999988876643 46666554 21 111 11 1112211 000000 001111
Q ss_pred CCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 150 DKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 150 ~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
.........+....+++.+|+. .+|++++ ++|+++ .|.. ..+++.+.|++.+
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~------gTPtiv~--~~G~~~---~G~~----~~~~L~~~l~~~~ 231 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQ------GTPAIVL--SNGTLV---PGYQ----GPKEMKAFLDEHQ 231 (232)
T ss_pred CcccccchHHHhHHHHHHcCCc------cccEEEE--cCCeEe---eCCC----CHHHHHHHHHHcc
Confidence 0001111112346788889998 8998774 367765 2322 3566777776554
No 171
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=95.96 E-value=0.079 Score=39.67 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=57.3
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc--CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEe
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI--GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~--~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 158 (247)
+.+.+||.|+ ++| |.|.. .|...++..+|.+. .+.+--|..+....
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~----------------------------- 64 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGE----------------------------- 64 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccc-----------------------------
Confidence 3578899999 966 56655 48888888888643 24444444432000
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcCCCcE--EEEEecCCCCCCCHHHHHHHHHh
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIV--RQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v--~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
..+..+.++|++..+ ..|+..++. +|.. ...+. +.++..+.|++.|+.
T Consensus 65 ~~~~~L~~~y~I~~~----gyPTl~lF~-~g~~~~~~~Y~---G~~r~~~~lv~~v~~ 114 (116)
T cd03007 65 KLNMELGERYKLDKE----SYPVIYLFH-GGDFENPVPYS---GADVTVDALQRFLKG 114 (116)
T ss_pred hhhHHHHHHhCCCcC----CCCEEEEEe-CCCcCCCccCC---CCcccHHHHHHHHHh
Confidence 013578999999733 579988885 4531 11111 122778889888765
No 172
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.80 E-value=0.13 Score=39.41 Aligned_cols=88 Identities=16% Similarity=0.213 Sum_probs=62.3
Q ss_pred EEEEEEeC--CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCc
Q psy15453 85 LVFFFYPL--DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162 (247)
Q Consensus 85 vvl~F~~a--~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 162 (247)
..+.|+++ .-+|-+....--|.++.++|....+.+.-|+.|. +.
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~----------------------------------~~ 81 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ----------------------------------SE 81 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC----------------------------------CH
Confidence 34445523 3345666677777888888853346777776653 46
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhc
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~ 217 (247)
.++.+||+. .+|+++++ ++|+++....|..+ .+++++.|+.+..
T Consensus 82 ~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~~~----k~~l~~~I~~~L~ 125 (132)
T PRK11509 82 AIGDRFGVF------RFPATLVF-TGGNYRGVLNGIHP----WAELINLMRGLVE 125 (132)
T ss_pred HHHHHcCCc------cCCEEEEE-ECCEEEEEEeCcCC----HHHHHHHHHHHhc
Confidence 899999999 99999999 78999988866544 4777777776653
No 173
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.67 E-value=0.031 Score=52.46 Aligned_cols=93 Identities=13% Similarity=0.205 Sum_probs=59.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL-NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l-~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
++|+++++|+ |.||--|+..-+.. .+.+...+-.++..+=++.-... .
T Consensus 473 ~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~------------------------------p 521 (569)
T COG4232 473 KAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTAND------------------------------P 521 (569)
T ss_pred CCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCC------------------------------H
Confidence 5579999999 99999999765543 34444444446666554332100 1
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
...++.++||+. ..|+.++++++|.=.....+.. +.+..++.|+.
T Consensus 522 ~~~~lLk~~~~~------G~P~~~ff~~~g~e~~~l~gf~----~a~~~~~~l~~ 566 (569)
T COG4232 522 AITALLKRLGVF------GVPTYLFFGPQGSEPEILTGFL----TADAFLEHLER 566 (569)
T ss_pred HHHHHHHHcCCC------CCCEEEEECCCCCcCcCCccee----cHHHHHHHHHH
Confidence 125778899998 8899999999987554432222 24555555544
No 174
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.37 E-value=0.09 Score=34.73 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|. +.|||.|......|.+ .++.+..+..|.
T Consensus 2 v~l~~-~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYT-KPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEEEe-CCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 34555 9999999987666654 367777777665
No 175
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.96 E-value=0.11 Score=34.16 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=25.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
|+.|. ..|||.|+.....|.+. ++.+.-++.+....
T Consensus 2 v~ly~-~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~ 37 (72)
T cd02066 2 VVVFS-KSTCPYCKRAKRLLESL-------GIEFEEIDILEDGE 37 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHH
Confidence 45566 99999999988887755 46666666665433
No 176
>KOG0191|consensus
Probab=94.54 E-value=0.18 Score=45.62 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=62.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHh-cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL 160 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~-~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 160 (247)
....++.|+ +.||++|+..+|...++...++. .++.+..+..+.
T Consensus 162 ~~~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~---------------------------------- 206 (383)
T KOG0191|consen 162 DADWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV---------------------------------- 206 (383)
T ss_pred CcceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccch----------------------------------
Confidence 346788888 99999999999999999998873 456666665541
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcc
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYT 218 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~ 218 (247)
...+...+++. ..|+..+.-++.. .. ...+..++.+.+++.++.....
T Consensus 207 ~~~~~~~~~v~------~~Pt~~~f~~~~~--~~--~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 207 HKSLASRLEVR------GYPTLKLFPPGEE--DI--YYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHHhhhhccc------CCceEEEecCCCc--cc--ccccccccHHHHHHHHHhhcCC
Confidence 12445566666 6677777755555 11 1234566678888777665543
No 177
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.53 E-value=0.3 Score=46.39 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=52.0
Q ss_pred CeE-EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 83 KYL-VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 83 k~v-vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+++ +-.|. +.+||.|+.....++++..+.. ++..-.|.... .
T Consensus 476 ~~~~i~v~~-~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~----------------------------------~ 518 (555)
T TIGR03143 476 KPVNIKIGV-SLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSH----------------------------------F 518 (555)
T ss_pred CCeEEEEEE-CCCCCCcHHHHHHHHHHHHhCC--CceEEEEECcc----------------------------------c
Confidence 444 55556 9999999998888888877654 44443332221 1
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHH
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLV 212 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l 212 (247)
.++.+.|++. .+|+++| ||++.+. |.. ..++++++|
T Consensus 519 ~~~~~~~~v~------~vP~~~i---~~~~~~~--G~~----~~~~~~~~~ 554 (555)
T TIGR03143 519 PDLKDEYGIM------SVPAIVV---DDQQVYF--GKK----TIEEMLELI 554 (555)
T ss_pred HHHHHhCCce------ecCEEEE---CCEEEEe--eCC----CHHHHHHhh
Confidence 5788899999 8997766 4566543 432 467777665
No 178
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.31 E-value=0.075 Score=40.74 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=30.8
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
.++++|+.|+ ..+||+|+...+.+.++..++. ++.++.+
T Consensus 4 ~a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFF-DYNCGYCKKLAPELEKLLKEDP--DVRVVFK 42 (154)
T ss_pred CCCEEEEEEE-CCCChhHHHhhHHHHHHHHHCC--CceEEEE
Confidence 3678888888 9999999999999999887765 3444443
No 179
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.15 E-value=0.091 Score=42.85 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHH
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNE 107 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~ 107 (247)
.+++.++.|. ...||+|++..+.+.+
T Consensus 76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 4688888888 9999999999999887
No 180
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.14 E-value=0.2 Score=34.91 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=30.5
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|..|. .+|||+|.+....|+++..++. ++.+.-|+.+.
T Consensus 3 v~iy~-~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFG-RPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHA 40 (85)
T ss_pred EEEEe-CCCChhHHHHHHHHHhhccccc--CCcEEEEECCC
Confidence 45666 9999999999999999987653 77777777764
No 181
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.64 E-value=0.23 Score=32.03 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=26.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~ 128 (247)
|+.|. ..+||+|.+....|+ ++|+.+-.++.+..+
T Consensus 1 V~vy~-~~~C~~C~~~~~~L~-------~~~i~y~~~dv~~~~ 35 (60)
T PF00462_consen 1 VVVYT-KPGCPYCKKAKEFLD-------EKGIPYEEVDVDEDE 35 (60)
T ss_dssp EEEEE-STTSHHHHHHHHHHH-------HTTBEEEEEEGGGSH
T ss_pred cEEEE-cCCCcCHHHHHHHHH-------HcCCeeeEcccccch
Confidence 45666 999999998877774 347888888777644
No 182
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.35 E-value=0.62 Score=34.17 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=49.1
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
.++++|+=- ++.||.....+.++++.++...+. +.+..+.+-... +-.
T Consensus 19 ~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~R------------------------------~vS 66 (105)
T PF11009_consen 19 EKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEYR------------------------------PVS 66 (105)
T ss_dssp -SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGGH------------------------------HHH
T ss_pred cCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeCc------------------------------hhH
Confidence 467666556 999999999999999998887653 777777553211 012
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
..++..||+..+ .|..+|| ++|++++..
T Consensus 67 n~IAe~~~V~He-----SPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 67 NAIAEDFGVKHE-----SPQVILI-KNGKVVWHA 94 (105)
T ss_dssp HHHHHHHT---------SSEEEEE-ETTEEEEEE
T ss_pred HHHHHHhCCCcC-----CCcEEEE-ECCEEEEEC
Confidence 588999999864 5999999 689998765
No 183
>KOG4277|consensus
Probab=93.12 E-value=0.22 Score=43.19 Aligned_cols=87 Identities=14% Similarity=0.227 Sum_probs=55.1
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCc
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 162 (247)
...++.|+ |.||.+|++.-|--+++-.++++-|..+-.=-.| -..| .
T Consensus 44 diW~VdFY-APWC~HCKkLePiWdeVG~elkdig~PikVGKlD-------------------------aT~f-------~ 90 (468)
T KOG4277|consen 44 DIWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLD-------------------------ATRF-------P 90 (468)
T ss_pred CeEEEEee-chhhhhcccccchhHHhCcchhhcCCceeecccc-------------------------cccc-------h
Confidence 46789999 9999999999888888766666544322110001 1122 4
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHh
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~ 214 (247)
.++..||+. .+|+.-++- ++.++.. .| ++.-+++++....
T Consensus 91 aiAnefgiq------GYPTIk~~k-gd~a~dY-RG----~R~Kd~iieFAhR 130 (468)
T KOG4277|consen 91 AIANEFGIQ------GYPTIKFFK-GDHAIDY-RG----GREKDAIIEFAHR 130 (468)
T ss_pred hhHhhhccC------CCceEEEec-CCeeeec-CC----CccHHHHHHHHHh
Confidence 788999999 889888884 4444322 13 2334666666544
No 184
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=93.08 E-value=0.33 Score=33.37 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=26.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.+..|..|. .+|||+|.+.-..|++ .|+.+-.++.+.
T Consensus 6 ~~~~V~ly~-~~~Cp~C~~ak~~L~~-------~gi~y~~idi~~ 42 (79)
T TIGR02190 6 KPESVVVFT-KPGCPFCAKAKATLKE-------KGYDFEEIPLGN 42 (79)
T ss_pred CCCCEEEEE-CCCCHhHHHHHHHHHH-------cCCCcEEEECCC
Confidence 344466677 9999999998877753 377777777765
No 185
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.00 E-value=0.3 Score=37.87 Aligned_cols=49 Identities=12% Similarity=-0.013 Sum_probs=36.9
Q ss_pred EEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH-hcCcEEEEEeC
Q psy15453 75 IKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH-KIGAEVVGVSV 124 (247)
Q Consensus 75 v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~-~~~~~vl~Vs~ 124 (247)
+.+-+-.++++|+.|+ ...||+|.+..+.+.++.+++- ...+.++....
T Consensus 5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3344445788888888 9999999999999999999982 33577777754
No 186
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=92.56 E-value=0.33 Score=33.15 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=24.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|. ..|||+|...-..|.++.- .+.++-|+.+.
T Consensus 2 v~~y~-~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 2 VVVFS-KSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEE-cCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 34555 9999999998888887633 34555555543
No 187
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.39 E-value=1.2 Score=41.94 Aligned_cols=37 Identities=16% Similarity=0.015 Sum_probs=26.4
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
..-+..|. +..||+|+.....++++..+.. ++..-.|
T Consensus 117 ~~~i~~fv-~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i 153 (517)
T PRK15317 117 DFHFETYV-SLSCHNCPDVVQALNLMAVLNP--NITHTMI 153 (517)
T ss_pred CeEEEEEE-cCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence 34466666 9999999998888888876543 4554443
No 188
>PHA03050 glutaredoxin; Provisional
Probab=92.32 E-value=0.38 Score=35.48 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=17.6
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEK 108 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l 108 (247)
|+.|. .+|||+|.+....|+++
T Consensus 15 V~vys-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFV-KFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEE-CCCChHHHHHHHHHHHc
Confidence 66777 99999999877777655
No 189
>KOG3425|consensus
Probab=92.21 E-value=0.38 Score=36.00 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCCeEEEEEEeC-------CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 81 RGKYLVFFFYPL-------DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 81 ~gk~vvl~F~~a-------~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+|+-+.+.|.-+ +|||.|.+..|-+.+..+...+ ++.||-|-+.+
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~ 75 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGN 75 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecC
Confidence 466566666522 5999999999999998885543 78888887654
No 190
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=91.72 E-value=0.87 Score=39.14 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=58.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
+.+|||.|| -..++.|...-..|..++.+|. .+.|+-|....
T Consensus 146 ~~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp--~vKFvkI~a~~----------------------------------- 187 (265)
T PF02114_consen 146 STWVVVHIY-EPGFPRCEIMNSCLECLARKYP--EVKFVKIRASK----------------------------------- 187 (265)
T ss_dssp T-EEEEEEE--TTSCCHHHHHHHHHHHHHH-T--TSEEEEEEECG-----------------------------------
T ss_pred CcEEEEEEE-eCCCchHHHHHHHHHHHHHhCC--ceEEEEEehhc-----------------------------------
Confidence 346777777 9999999999999999999998 68998876542
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCC---CCCCCHHHHHHHHHhh
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDL---PVGRSVEETLRLVRAF 215 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~---~~~~~~~~il~~l~~l 215 (247)
..+...|... .+|+.+++ ++|.++..+++-. +..-...++-..|...
T Consensus 188 ~~~~~~f~~~------~LPtllvY-k~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 188 CPASENFPDK------NLPTLLVY-KNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp CCTTTTS-TT------C-SEEEEE-ETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred cCcccCCccc------CCCEEEEE-ECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 0133455555 77998888 6999999886533 2334455555555443
No 191
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.65 E-value=0.89 Score=32.68 Aligned_cols=27 Identities=19% Similarity=0.010 Sum_probs=19.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 93 DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 93 ~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+|||+|.+.-..|+++ |+.+..+..+.
T Consensus 25 ~~Cp~C~~ak~lL~~~-------~i~~~~~di~~ 51 (97)
T TIGR00365 25 PQCGFSARAVQILKAC-------GVPFAYVNVLE 51 (97)
T ss_pred CCCchHHHHHHHHHHc-------CCCEEEEECCC
Confidence 7999999877776653 66666666643
No 192
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.51 E-value=0.76 Score=30.82 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=23.8
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
..|. .++||.|++....|++ .|+.+-.+..+.
T Consensus 4 ~ly~-~~~C~~C~ka~~~L~~-------~gi~~~~~di~~ 35 (73)
T cd03027 4 TIYS-RLGCEDCTAVRLFLRE-------KGLPYVEINIDI 35 (73)
T ss_pred EEEe-cCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence 4455 8999999988877774 377777777764
No 193
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.47 E-value=0.63 Score=33.61 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|. .+|||+|.+.-.-|.++ ++.+-.|..|.
T Consensus 10 Vvvys-k~~Cp~C~~ak~~L~~~-------~i~~~~vdid~ 42 (99)
T TIGR02189 10 VVIFS-RSSCCMCHVVKRLLLTL-------GVNPAVHEIDK 42 (99)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHc-------CCCCEEEEcCC
Confidence 56677 89999999876655543 55555566654
No 194
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=91.32 E-value=0.91 Score=32.03 Aligned_cols=27 Identities=15% Similarity=0.019 Sum_probs=18.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 93 DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 93 ~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+|||+|......|++. ++.+-.+..+.
T Consensus 21 ~~Cp~C~~ak~~L~~~-------~i~y~~idv~~ 47 (90)
T cd03028 21 PRCGFSRKVVQILNQL-------GVDFGTFDILE 47 (90)
T ss_pred CCCcHHHHHHHHHHHc-------CCCeEEEEcCC
Confidence 5999999877766654 56666665543
No 195
>PRK10638 glutaredoxin 3; Provisional
Probab=90.90 E-value=1.1 Score=31.01 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=23.2
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
..|. ..|||+|.+....|++ +++.+-.+..+..
T Consensus 5 ~ly~-~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~ 37 (83)
T PRK10638 5 EIYT-KATCPFCHRAKALLNS-------KGVSFQEIPIDGD 37 (83)
T ss_pred EEEE-CCCChhHHHHHHHHHH-------cCCCcEEEECCCC
Confidence 3444 8999999988877774 3666666666653
No 196
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=90.71 E-value=0.7 Score=31.43 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=22.2
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
..|+ .++||.|......|++. |+.+-.++.+.
T Consensus 2 ~ly~-~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~ 33 (79)
T TIGR02181 2 TIYT-KPYCPYCTRAKALLSSK-------GVTFTEIRVDG 33 (79)
T ss_pred EEEe-cCCChhHHHHHHHHHHc-------CCCcEEEEecC
Confidence 4556 99999999888777643 55555555543
No 197
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=90.67 E-value=1.2 Score=29.73 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=24.0
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|. .++||.|......|++ .++.+-.++.+.
T Consensus 2 i~ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~ 34 (75)
T cd03418 2 VEIYT-KPNCPYCVRAKALLDK-------KGVDYEEIDVDG 34 (75)
T ss_pred EEEEe-CCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 34556 8999999987777764 367777777665
No 198
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=1.2 Score=30.77 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=26.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC--hHhHHHHHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS--HFTHRAWIN 135 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~--~~~~~~~~~ 135 (247)
+..|- -++||+|.+.-..|. ++|+.+.-|..+. .+....+++
T Consensus 3 v~iyt-~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~ 46 (80)
T COG0695 3 VTIYT-KPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVK 46 (80)
T ss_pred EEEEE-CCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHH
Confidence 34444 788999998877776 3466666655544 334444444
No 199
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=89.19 E-value=0.76 Score=36.21 Aligned_cols=40 Identities=20% Similarity=0.103 Sum_probs=32.6
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
.++++|+.|+ ...||+|....+.+.++..++.. ++.+.-+
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLPK-DVKFEKV 53 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCCC-CceEEEc
Confidence 5788899999 99999999999999999888743 4555433
No 200
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=89.16 E-value=1.4 Score=30.81 Aligned_cols=37 Identities=14% Similarity=-0.039 Sum_probs=25.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
|+.|- .+|||+|.+....|+++..++. ++.+.-++.+
T Consensus 2 V~vys-~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFG-RPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEe-CCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 34455 8999999999888887754432 4555555554
No 201
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.12 E-value=3.7 Score=38.63 Aligned_cols=31 Identities=23% Similarity=0.069 Sum_probs=23.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~ 113 (247)
+..-+..|. +..||+|+.....++++..+..
T Consensus 117 ~~~~i~~f~-~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 117 GPLHFETYV-SLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred CCeEEEEEE-eCCCCCCHHHHHHHHHHHHhCC
Confidence 345567777 9999999988888887766643
No 202
>PRK10329 glutaredoxin-like protein; Provisional
Probab=88.90 E-value=2.1 Score=29.63 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=24.4
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+..|. .+|||+|......|. ++|+.+-.|..+.
T Consensus 3 v~lYt-~~~Cp~C~~ak~~L~-------~~gI~~~~idi~~ 35 (81)
T PRK10329 3 ITIYT-RNDCVQCHATKRAME-------SRGFDFEMINVDR 35 (81)
T ss_pred EEEEe-CCCCHhHHHHHHHHH-------HCCCceEEEECCC
Confidence 34455 899999998777664 3588887777765
No 203
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=88.83 E-value=1.2 Score=30.68 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=25.8
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS 123 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs 123 (247)
..|+ ...||+|....+.+.++..... .++.+.-+.
T Consensus 2 ~~f~-d~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 36 (98)
T cd02972 2 VEFF-DPLCPYCYLFEPELEKLLYADD-GGVRVVYRP 36 (98)
T ss_pred eEEE-CCCCHhHHhhhHHHHHHHhhcC-CcEEEEEec
Confidence 4566 9999999999999999874443 356655443
No 204
>PRK10824 glutaredoxin-4; Provisional
Probab=88.34 E-value=1.7 Score=32.48 Aligned_cols=16 Identities=19% Similarity=-0.047 Sum_probs=12.8
Q ss_pred CCCCCcHHHHHHHHHH
Q psy15453 93 DFTFVCPTEVLALNEK 108 (247)
Q Consensus 93 ~~Cp~C~~~~~~l~~l 108 (247)
++||+|.+...-|+++
T Consensus 28 p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 28 PSCGFSAQAVQALSAC 43 (115)
T ss_pred CCCchHHHHHHHHHHc
Confidence 4999999887777654
No 205
>KOG0914|consensus
Probab=88.28 E-value=0.74 Score=38.18 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=31.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEE
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEV 119 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~v 119 (247)
.++-+|.|| +.|.|-|....|-+.++..+|...+..+
T Consensus 144 ~t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkF 180 (265)
T KOG0914|consen 144 RTYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKF 180 (265)
T ss_pred ceEEEEEEE-eecChhhcccccccHHHHHHhCCCCCcc
Confidence 347799999 9999999999999999999997555554
No 206
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=88.05 E-value=1.8 Score=28.86 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=23.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|. .+|||.|.+....|++ .++.+-.++.+.
T Consensus 3 v~lys-~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~~ 35 (72)
T cd03029 3 VSLFT-KPGCPFCARAKAALQE-------NGISYEEIPLGK 35 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHH-------cCCCcEEEECCC
Confidence 34555 8999999998776663 367766666654
No 207
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=87.76 E-value=1.2 Score=29.89 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=23.1
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 88 FFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 88 ~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.|. ..+||.|+.....|++ +|+.+-.+..+.
T Consensus 3 ly~-~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~ 33 (72)
T TIGR02194 3 VYS-KNNCVQCKMTKKALEE-------HGIAFEEINIDE 33 (72)
T ss_pred EEe-CCCCHHHHHHHHHHHH-------CCCceEEEECCC
Confidence 344 8999999998888864 477777776664
No 208
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=86.28 E-value=0.83 Score=37.55 Aligned_cols=40 Identities=13% Similarity=0.161 Sum_probs=29.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~V 122 (247)
.|++.|+.|+ .-.||+|....+.+ ..+.+.+.+ ++.++-+
T Consensus 36 ~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~ 78 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKY 78 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHhcccccchHHHHHhCCC-CCeEEEe
Confidence 4688899999 99999999988765 666666653 5555543
No 209
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=83.57 E-value=20 Score=28.38 Aligned_cols=125 Identities=11% Similarity=0.113 Sum_probs=70.9
Q ss_pred CCCCCCceeeeeecCCceeEEcCCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhc----------------C
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDY---RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI----------------G 116 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~---~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~----------------~ 116 (247)
|..+|++.+... .+++++.|.+. .|++-|+.|- +.-- +..+...|.++.+.+... =
T Consensus 1 G~R~~~a~V~r~--aD~~p~~L~~~~~adGrfrI~vFa-gd~~--~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~ 75 (167)
T cd02979 1 GRRFPSAPVVRQ--ADALPVHLGHRLPADGRFRIYVFA-GDIA--PAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSV 75 (167)
T ss_pred CCcCCCceEEEe--cCCCCHhHhhhccCCCCEEEEEEc-CCCC--chhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCc
Confidence 567888888654 36788888754 4899988887 4322 244445555555555321 1
Q ss_pred cEEEEEeCCChHhH--HHHHHHhhccccccccCCCCCcceeEEecCC------chHHHHhCCcccCCCccceeEEEEcCC
Q psy15453 117 AEVVGVSVDSHFTH--RAWINSLKKDNSLKKDNRLDKLKIPLLSDLT------HEISRDYGVYLEDKGHSLRGLFIIDRE 188 (247)
Q Consensus 117 ~~vl~Vs~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~------~~~~~~~~~~~~~~g~~~p~~~lId~~ 188 (247)
++++.|......+. ...-... +++-...+. ..+.++.|.. +...+.||+.. .....++|-||
T Consensus 76 ~~~~~I~~~~~~~~e~~dlP~~~---~p~~~~~~~--~~~~v~~d~~~~~~~~~~~~~~~gv~~-----~~g~vvvvRPD 145 (167)
T cd02979 76 FDVVTIHAAPRREIELLDLPAVL---RPFGEKKGW--DYEKIYADDDSYHEGHGDAYEKYGIDP-----ERGAVVVVRPD 145 (167)
T ss_pred EEEEEEecCCccccchhhCcHhh---cCCCCcccc--ceeeEEecCccccCCcccHHHhhCCCC-----CCCCEEEECCC
Confidence 56777755432211 1111111 111112222 2234455543 56888999763 23679999999
Q ss_pred CcEEEEE
Q psy15453 189 GIVRQIT 195 (247)
Q Consensus 189 G~v~~~~ 195 (247)
|-|-++.
T Consensus 146 gyVg~~~ 152 (167)
T cd02979 146 QYVALVG 152 (167)
T ss_pred CeEEEEe
Confidence 9888764
No 210
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=82.32 E-value=8.9 Score=28.04 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccce
Q psy15453 101 EVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLR 180 (247)
Q Consensus 101 ~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p 180 (247)
...=|++..+++++.+..=+.|++++.+...+...-. ...+++.....++++.+|+. ++|
T Consensus 36 S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la--------------pgl~l~P~sgddLa~rL~l~------hYP 95 (105)
T TIGR03765 36 SRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALA--------------PGLPLLPVSGDDLAERLGLR------HYP 95 (105)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--------------CCCcccCCCHHHHHHHhCCC------ccc
Confidence 3444888889999889998999999988887765521 35566666678999999999 888
Q ss_pred eEEEEcCCC
Q psy15453 181 GLFIIDREG 189 (247)
Q Consensus 181 ~~~lId~~G 189 (247)
++|..+|
T Consensus 96 --vLit~tg 102 (105)
T TIGR03765 96 --VLITATG 102 (105)
T ss_pred --EEEecCc
Confidence 4566665
No 211
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.90 E-value=4.6 Score=39.00 Aligned_cols=81 Identities=14% Similarity=0.007 Sum_probs=47.1
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHH---HHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLAL---NEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL 157 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l---~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 157 (247)
.+||++|+.- .+||.-|..+..+- .++++-+ |-.||.|-+|..|.- .++.+ +
T Consensus 42 edkPIflSIG-ys~CHWChVM~~ESf~d~eiA~~l---N~~FV~IKVDREERP--DvD~~--------Y----------- 96 (667)
T COG1331 42 EDKPILLSIG-YSTCHWCHVMAHESFEDPEIAAIL---NENFVPVKVDREERP--DVDSL--------Y----------- 96 (667)
T ss_pred hCCCEEEEec-cccccchHHHhhhcCCCHHHHHHH---HhCceeeeEChhhcc--CHHHH--------H-----------
Confidence 5899999999 99999999764321 1122222 345677777653310 00000 0
Q ss_pred ecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 158 SDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 158 ~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+.+.+..... . .-|-++++-|||+..+..
T Consensus 97 ----m~~~q~~tG~---G--GWPLtVfLTPd~kPFfag 125 (667)
T COG1331 97 ----MNASQAITGQ---G--GWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred ----HHHHHHhccC---C--CCceeEEECCCCceeeee
Confidence 1222222222 1 459999999999988765
No 212
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.43 E-value=3.4 Score=34.54 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=35.8
Q ss_pred cCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcC
Q psy15453 69 DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116 (247)
Q Consensus 69 d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~ 116 (247)
..++..+-..+..++++++.|. ..-||+|...++.|.+.+....+..
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~ 117 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVR 117 (244)
T ss_pred cCCCCcccccCCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCc
Confidence 3455555555556688888888 9999999999999999777766443
No 213
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=80.93 E-value=10 Score=29.36 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccc
Q psy15453 100 TEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSL 179 (247)
Q Consensus 100 ~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~ 179 (247)
....=|++..+++++.+..=+.|++++.+.+.+...-. ...+++.....++++.+++. ++
T Consensus 73 ~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la--------------pgl~l~P~sgddLA~rL~l~------HY 132 (142)
T PF11072_consen 73 LSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLA--------------PGLPLLPVSGDDLARRLGLS------HY 132 (142)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc--------------CCCeecCCCHHHHHHHhCCC------cc
Confidence 33444788888999889999999999988888766532 35566666678999999999 88
Q ss_pred eeEEEEcCCC
Q psy15453 180 RGLFIIDREG 189 (247)
Q Consensus 180 p~~~lId~~G 189 (247)
| ++|..+|
T Consensus 133 P--vLIt~~g 140 (142)
T PF11072_consen 133 P--VLITATG 140 (142)
T ss_pred c--EEeecCC
Confidence 8 4555555
No 214
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=80.38 E-value=8.6 Score=30.58 Aligned_cols=119 Identities=11% Similarity=0.012 Sum_probs=60.5
Q ss_pred ccccccccCCCCCCceeeeeecCCceeEEcCCC---CCCeEEEEEEeCCCCCCcHHHHHHHHHHH-------HHHHhc--
Q psy15453 48 EGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDY---RGKYLVFFFYPLDFTFVCPTEVLALNEKI-------DEFHKI-- 115 (247)
Q Consensus 48 ~~~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~~---~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~-------~~~~~~-- 115 (247)
.....+.+|..+|+..+.. =.||+++.|.+. .|++-|++|-...-.+.+...+..+.+.. .+|...
T Consensus 25 ~~a~~l~~G~Rlp~~~v~r--~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~ 102 (169)
T PF07976_consen 25 SLAGGLRPGRRLPSAKVVR--HADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDR 102 (169)
T ss_dssp GGBTTS-TTCB----EEEE--TTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS
T ss_pred ccccCcCCccccCCceEEE--EcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCC
Confidence 3456799999999999853 357899999865 48999999984444555544444444433 244322
Q ss_pred ----CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecC------CchHHHHhCCc
Q psy15453 116 ----GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL------THEISRDYGVY 171 (247)
Q Consensus 116 ----~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~------~~~~~~~~~~~ 171 (247)
-++++.|...+..+.+ +.+--.-++++....++ ..+.++.|. .+...+.||+.
T Consensus 103 ~~~s~~~~~~I~~~~~~~~e-~~dlP~~~~p~~~~~~~--~~~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 103 DPDSVFDVLLIHSSPRDEVE-LFDLPEIFRPFDGKRGW--DYWKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp -TTSSEEEEEEESS-CCCS--GGGS-CCCS-EETTTTC----SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred CCCCeeEEEEEecCCCCcee-HHHCcHhhCcccCCCCc--cceeEEecCcccccCcccHHHhhCCC
Confidence 2788888765322111 11111122233333333 345666664 36788888865
No 215
>KOG0911|consensus
Probab=80.26 E-value=1.3 Score=36.89 Aligned_cols=44 Identities=18% Similarity=0.327 Sum_probs=36.0
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
+++..++.|| +.||.+|.....-+..+.+.+ .+++++-+..+..
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~ 59 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEF 59 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhh
Confidence 7889999999 999999999888888887777 3677777766553
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=80.18 E-value=5.6 Score=36.70 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=48.7
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
.-+..+-.+.+. -++|+.|++.+++|..-|+..- ++- .++...+...+...+++.+++|-||.|..+
T Consensus 271 ~Ree~L~rL~v~---l~~~~~v~l~~LRg~~RvvIvA-G~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 271 TRDETLSRLPVR---LSTNRIVELVQLRDITRPVILA-GTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred HhhhhhccceEe---ccCCCEEeHHHhcCcceEEEEE-CCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 334455555542 2357799999999975544443 333 678888899999999999999999999775
No 217
>KOG2603|consensus
Probab=79.84 E-value=18 Score=31.73 Aligned_cols=115 Identities=10% Similarity=0.155 Sum_probs=74.2
Q ss_pred eEEEEEEeC----CCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcce-eEEe
Q psy15453 84 YLVFFFYPL----DFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI-PLLS 158 (247)
Q Consensus 84 ~vvl~F~~a----~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 158 (247)
+.+|.|+.| ..|..|..+..+++-+.+.+...+-. .+. . .+=| .+=.
T Consensus 61 ys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~-----sn~--------t---------------klFF~~Vd~ 112 (331)
T KOG2603|consen 61 YSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPF-----SNG--------T---------------KLFFCMVDY 112 (331)
T ss_pred eEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCC-----CCc--------c---------------eEEEEEEec
Confidence 566666645 46999999999888888887643211 000 0 0111 1112
Q ss_pred cCCchHHHHhCCcccCCCccceeEEEEcC-CCcEEEEE-ecCCCCCCCHHHHHHHHHhhhcccccCCccCCCCcCC
Q psy15453 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDR-EGIVRQIT-LNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232 (247)
Q Consensus 159 D~~~~~~~~~~~~~~~~g~~~p~~~lId~-~G~v~~~~-~~~~~~~~~~~~il~~l~~l~~~~~~~~~~~~~~~~~ 232 (247)
|+..++-+++++. ..|+.+++.| .|+..... ....+.+...+++.+.++......-....-|.+|.+.
T Consensus 113 ~e~p~~Fq~l~ln------~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~si~rPp~~s~~ 182 (331)
T KOG2603|consen 113 DESPQVFQQLNLN------NVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVRSIQRPPNYSKP 182 (331)
T ss_pred cccHHHHHHhccc------CCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheeeeeecCCcccch
Confidence 3447888999999 8999999954 44454222 1122345567888888888877666667779999874
No 218
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=79.42 E-value=4.4 Score=37.08 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=27.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHH
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWI 134 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~ 134 (247)
|+.|- .+|||+|.+.-..|++ +|+.+-.|..|......++.
T Consensus 4 V~vys-~~~Cp~C~~aK~~L~~-------~gi~~~~idi~~~~~~~~~~ 44 (410)
T PRK12759 4 VRIYT-KTNCPFCDLAKSWFGA-------NDIPFTQISLDDDVKRAEFY 44 (410)
T ss_pred EEEEe-CCCCHHHHHHHHHHHH-------CCCCeEEEECCCChhHHHHH
Confidence 55666 9999999987666664 37777777776443333333
No 219
>PTZ00062 glutaredoxin; Provisional
Probab=76.97 E-value=7.9 Score=31.90 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=22.5
Q ss_pred CCeEEEEEE---eCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 82 GKYLVFFFY---PLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 82 gk~vvl~F~---~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.++++|+.- ..++||+|++....|++ .++.+..+..+.
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~~ 152 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIFE 152 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcCC
Confidence 445555544 12588888876666653 366666666553
No 220
>PHA03075 glutaredoxin-like protein; Provisional
Probab=76.16 E-value=2 Score=31.91 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=30.6
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
|.++|-|. -+-|+.|......|.++.++|.-..++++..
T Consensus 2 K~tLILfG-KP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 2 KKTLILFG-KPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred CceEEEeC-CcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 56889999 9999999999999988887775444555544
No 221
>PRK06184 hypothetical protein; Provisional
Probab=75.35 E-value=32 Score=32.11 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=70.0
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCC-C-CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDY-R-GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~-~-gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.+.+|..+|+..+ ...+|+.+++.++ . ++++||.|-...+ . .. ...++.++.|....
T Consensus 385 ~~~~G~r~p~~~~---~~~~~~~~~l~d~~~~~~~~ll~~~~~~~--~------~~-------~~~~~~~~~~~~~~--- 443 (502)
T PRK06184 385 GLRAGDRAPDAPL---LGAAGQPTRLFDLFRGPHWTLLAFGAGAA--A------IL-------ARRGLRIHRVGDAA--- 443 (502)
T ss_pred CCCCcCCCCCchh---ccCCCceeeHHHhhCCCcEEEEEecCCch--h------hh-------hhcCceEEEecccC---
Confidence 4678999999987 3446777777665 3 4788888652222 0 01 12356666553221
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHH
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETL 209 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il 209 (247)
....+.|.++.+.+.|++. -...+||-|||.|.+.. .....+.+.
T Consensus 444 -----------------------~~~~~~d~~g~~~~~~~~~-------~~~~~lvRPDg~v~~~~-----~~~~~~~~~ 488 (502)
T PRK06184 444 -----------------------EGGDLVDDAGHFRDAYGLT-------GGTLVLVRPDGYVGLIA-----AGDDAAALE 488 (502)
T ss_pred -----------------------CCCceeCCCccHHHHhcCC-------CCcEEEECCCcceEEEe-----cCCCHHHHH
Confidence 0112568888899999886 24689999999999874 112567788
Q ss_pred HHHHhh
Q psy15453 210 RLVRAF 215 (247)
Q Consensus 210 ~~l~~l 215 (247)
+.++.+
T Consensus 489 ~~l~~~ 494 (502)
T PRK06184 489 AYLARV 494 (502)
T ss_pred HHHHHh
Confidence 888766
No 222
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=74.48 E-value=29 Score=26.44 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=27.2
Q ss_pred cceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 178 SLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 178 ~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
..|++-|+ +||++++..-...-.+.+.++|...|...
T Consensus 95 SSPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 95 SSPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp -SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHH
Confidence 56888888 89999999855555778888888887654
No 223
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=72.81 E-value=2.3 Score=20.67 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=10.6
Q ss_pred CchhhHHHHHHHHH
Q psy15453 1 MLKYGLSLAVILLY 14 (247)
Q Consensus 1 m~k~~l~l~~~ll~ 14 (247)
|+|+.+++.++++.
T Consensus 1 MMk~vIIlvvLLli 14 (19)
T PF13956_consen 1 MMKLVIILVVLLLI 14 (19)
T ss_pred CceehHHHHHHHhc
Confidence 78888887776655
No 224
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=72.78 E-value=39 Score=25.55 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=33.3
Q ss_pred hHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhhcccc
Q psy15453 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDE 220 (247)
Q Consensus 163 ~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~~~~~ 220 (247)
.+.+.||+... ..|++++++.++. +|.. ....-+.+.+.+.++.+.....
T Consensus 70 ~~~~~fgl~~~----~~P~v~i~~~~~~-KY~~---~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 70 DLEEALNIGGF----GYPAMVAINFRKM-KFAT---LKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred HHHHHcCCCcc----CCCEEEEEecccC-cccc---ccCccCHHHHHHHHHHHHcCCc
Confidence 47788888622 5799999999876 6552 2222345778888887765443
No 225
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=71.31 E-value=67 Score=31.20 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=79.2
Q ss_pred ccccccCCCCCCceeeeeecCCceeEEcCC-C--CCCeEEEEEEeCCCCCCcHHHHHHHHHHH--------HHHHhcC--
Q psy15453 50 WTNAVVMKPAPYWKGTAVVDGNIKEIKLTD-Y--RGKYLVFFFYPLDFTFVCPTEVLALNEKI--------DEFHKIG-- 116 (247)
Q Consensus 50 ~~~~~~G~~~P~f~l~~~~d~~G~~v~l~~-~--~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~--------~~~~~~~-- 116 (247)
...+.+|..+|++.+... .+++++.|.+ + .|++.++.|-...-.+.....+..+.+.. ..|...+
T Consensus 460 ~~~~~~G~r~~~~~v~~~--~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 537 (634)
T PRK08294 460 ATGFPIGKRFHSAPVIRL--ADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGAD 537 (634)
T ss_pred ccCCCCceeCCCCceeec--cCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCC
Confidence 346889999999998544 3556777653 3 48899888873333344444444443332 1111111
Q ss_pred ----cEEEEEeCCChH--hHHHHHHHhhccccccccCCCCCcce-eEEecC--CchHHHHhCCcccCCCccceeEEEEcC
Q psy15453 117 ----AEVVGVSVDSHF--THRAWINSLKKDNSLKKDNRLDKLKI-PLLSDL--THEISRDYGVYLEDKGHSLRGLFIIDR 187 (247)
Q Consensus 117 ----~~vl~Vs~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~D~--~~~~~~~~~~~~~~~g~~~p~~~lId~ 187 (247)
+.++.|...+.. ++..+-.... ++-...++. .| .++.|. .....+.||+..+ .-..+|+-|
T Consensus 538 ~~~~~~~~~i~~~~~~~~~~~~~p~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gi~~~-----~g~~vvvRP 607 (634)
T PRK08294 538 IDAVIDVRAIFQQPHRELDLEDVPALLL---PRKGRFGLT--DYEKVFCADLSGADIFDLRGIDRD-----RGAVVVVRP 607 (634)
T ss_pred CCcEEEEEEEecCCCCccchhhCcHhhC---CcccccCcc--chhheecCCCchhhHHHhhCCCCC-----ceeEEEECC
Confidence 566666544321 1221111111 111122221 22 233332 2467788997632 357999999
Q ss_pred CCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 188 EGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 188 ~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
||.|-++. +++ +.+.+-+..+.+
T Consensus 608 D~~v~~~~--~l~---~~~~l~~yf~~~ 630 (634)
T PRK08294 608 DQYVANVL--PLD---AHAELAAFFAGF 630 (634)
T ss_pred CCceEEEe--cCc---cHHHHHHHHHHh
Confidence 99988874 332 355655555443
No 226
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=70.44 E-value=36 Score=32.36 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=20.8
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCc---EEEE
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGI---VRQI 194 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~---v~~~ 194 (247)
+.+..+.|++. ..|++.|.|.+|. |++.
T Consensus 408 ~~~~~~~~~v~------~~P~~~i~~~~~~~~~i~f~ 438 (555)
T TIGR03143 408 EPESETLPKIT------KLPTVALLDDDGNYTGLKFH 438 (555)
T ss_pred chhhHhhcCCC------cCCEEEEEeCCCcccceEEE
Confidence 45777888887 7899999876664 6655
No 227
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=69.78 E-value=66 Score=30.34 Aligned_cols=121 Identities=14% Similarity=0.051 Sum_probs=72.7
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~g-k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
...+|..+|+..+ .+..|....++++.| ..+||.|- .. +..... +...+ .....+..++.+.......
T Consensus 410 ~~~~G~~~p~~~~---~~~~~~~~~~d~~~~~~~~ll~~~-~~--~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~- 478 (538)
T PRK06183 410 HSPVGTLFPQPRV---ELGGGDRGLLDDVLGPGFAVLGWG-CD--PLAGLS-DEQRA---RWRALGARFVQVVPAVQAH- 478 (538)
T ss_pred CCCcccCcCCCee---EcCCCCcccchhccCCceEEEEec-CC--chhcCC-HHHHH---HHHHcCCeEEEEecccccc-
Confidence 4568999999987 444554445666765 48888774 22 111100 11112 2334477777775432110
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
.-....+.|.++.+.+.|+.. . ...+||-||+.|.... .....+.++.
T Consensus 479 --------------------~~~~~~~~d~~g~~~~~~~~~------~-~~~~lvRPD~~v~~~~-----~~~~~~~~~~ 526 (538)
T PRK06183 479 --------------------TAQDDHDSDVDGALRAWLARH------G-ASAVLLRPDRYVAAAA-----DAQTLGALLA 526 (538)
T ss_pred --------------------cCCCceeecCCchHHHHHHhC------C-CEEEEECCCEEEEEee-----CHHHHHHHHH
Confidence 013346789999999999876 2 4689999999998653 2234677776
Q ss_pred HHHhh
Q psy15453 211 LVRAF 215 (247)
Q Consensus 211 ~l~~l 215 (247)
.|...
T Consensus 527 ~l~~~ 531 (538)
T PRK06183 527 ALAAL 531 (538)
T ss_pred HHHhh
Confidence 66543
No 228
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=69.66 E-value=14 Score=31.54 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=27.2
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHH
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~ 113 (247)
.||+.++..- +-|||+|-.+.=.|-....+|.
T Consensus 57 ~Gk~~v~~ig-w~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIG-WEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEe-cccCccchhhHHHHHHHHHhcC
Confidence 5898877777 9999999999888887777876
No 229
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=68.05 E-value=63 Score=30.55 Aligned_cols=118 Identities=16% Similarity=0.096 Sum_probs=72.3
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCC-eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhH
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk-~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~ 130 (247)
...+|..+|+..+. .+|+.+++.|+.|. .+||.|- .. .. . ....+.. ......+.++.+..+...
T Consensus 426 ~~~pG~r~p~~~~~----~~~~~~~l~dl~g~~f~ll~~~-~~-~~---~--~~~~~~~-~~~~~~~~~~~~~~~~~~-- 491 (547)
T PRK08132 426 GPVPGAPAPDAPVR----ADGEPGWLLDLLGGGFTLLLFG-DD-AA---A--AALLQAL-AAAALPVRVVAVVPAGAA-- 491 (547)
T ss_pred CCCCCCCCCCCccc----CCCCceEHHHhcCCCEEEEEec-CC-ch---h--hhhhhhh-hccCCceEEEEEecCccc--
Confidence 46789999999863 35677888888654 7777765 31 10 0 1111111 112224555555443200
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHH
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~ 210 (247)
..+...+.|.++.+.+.|++. -...+||-|||.|.+.. .....+.+.+
T Consensus 492 --------------------~~~~~~~~d~~~~~~~~~~~~-------~~~~~LvRPDg~va~~~-----~~~~~~~~~~ 539 (547)
T PRK08132 492 --------------------QAAAGVLEDADGLAAERYDAR-------PGTVYLIRPDQHVAARW-----RTPDAAAVRA 539 (547)
T ss_pred --------------------ccCcccccCcccHHHHHhCCC-------CCeEEEECCCceEEEEe-----cCCCHHHHHH
Confidence 011224568889999999886 24689999999999875 1235677777
Q ss_pred HHHhh
Q psy15453 211 LVRAF 215 (247)
Q Consensus 211 ~l~~l 215 (247)
.|+..
T Consensus 540 ~l~~~ 544 (547)
T PRK08132 540 ALARA 544 (547)
T ss_pred HHHHH
Confidence 77764
No 230
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=67.94 E-value=34 Score=28.33 Aligned_cols=108 Identities=10% Similarity=0.098 Sum_probs=61.1
Q ss_pred CCCCcee-eeeecCCceeEEcC-------CCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 58 PAPYWKG-TAVVDGNIKEIKLT-------DYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 58 ~~P~f~l-~~~~d~~G~~v~l~-------~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.-|.|++ .++.|.+|+.+--. ++..=.--|+|+-+ -=..++.-+.+.+... ..+.+|.+..+..+.
T Consensus 86 ~DPs~tl~~DI~d~~G~vi~~~G~~vNPLd~v~~~~~LvfiDg----dD~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~ 159 (209)
T PRK13738 86 FDPSVRLAADIRDNEGRVFARQGEVVNPLQYVPFNQTLYFING----DDPAQVAWMKRQTPPT--LESKIILVQGSIPEM 159 (209)
T ss_pred eCCcEEecCccCCCCCCEEEcCCCeECcccccCCCceEEEEeC----CCHHHHHHHHHhhhcc--CCceEEEECCCHHHH
Confidence 3466666 34556666654322 11110113444412 3345555454433322 157777776654332
Q ss_pred HHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEe
Q psy15453 130 HRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITL 196 (247)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~ 196 (247)
.+ .+.-+++.|..+.+.++||+. ++|+.+---++|+...+..
T Consensus 160 ~~-------------------~l~~~vYfdQ~G~Lt~rF~I~------~VPAvV~~~q~G~~l~I~E 201 (209)
T PRK13738 160 SK-------------------ALDSRIYFDQNGVLCQRFGID------QVPARVSAVPGGRFLKVEF 201 (209)
T ss_pred HH-------------------HhCCceEEcCcchHHHhcCCe------eeceEEEEcCCCCEEEEEE
Confidence 22 245567778889999999999 8998664337888877763
No 231
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=67.30 E-value=17 Score=28.98 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHH
Q psy15453 101 EVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINS 136 (247)
Q Consensus 101 ~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~ 136 (247)
-.|++.+-.++++++|+.++.+|-+.+.....|...
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~ 82 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEK 82 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhh
Confidence 467888888999999999999999888888888774
No 232
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.63 E-value=6.1 Score=39.49 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=47.3
Q ss_pred CcceeEEecCCchHHHHhCCcccC-------C------CccceeEEEEcCCCcEEEEEe---cCCCCCCCHHHHHHHHHh
Q psy15453 151 KLKIPLLSDLTHEISRDYGVYLED-------K------GHSLRGLFIIDREGIVRQITL---NDLPVGRSVEETLRLVRA 214 (247)
Q Consensus 151 ~~~~~~l~D~~~~~~~~~~~~~~~-------~------g~~~p~~~lId~~G~v~~~~~---~~~~~~~~~~~il~~l~~ 214 (247)
+-..|++.|+. +-..||..... + ...+|..-++|.+|++..-.. ..++...-...|++.|++
T Consensus 249 ~r~IpIiaD~~--VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~ 326 (877)
T COG0525 249 GREIPIIADEY--VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEE 326 (877)
T ss_pred CCeeeeecCcc--cCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHh
Confidence 34577777654 34555543211 1 135688899999999984321 223323334667777766
Q ss_pred hh---cccccCCccCCCCcCCC
Q psy15453 215 FQ---YTDEHGEACPSGWQPGQ 233 (247)
Q Consensus 215 l~---~~~~~~~~~~~~~~~~~ 233 (247)
.- ....+.+..+-+|+-|+
T Consensus 327 ~GlLvk~e~~~h~V~~~~R~g~ 348 (877)
T COG0525 327 QGLLVKIEPHKHSVGHCERCGT 348 (877)
T ss_pred CCCeEeeeeccccCccccCCCc
Confidence 33 34445678888888554
No 233
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=64.51 E-value=11 Score=28.54 Aligned_cols=44 Identities=7% Similarity=-0.002 Sum_probs=27.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC--CC--hHhHHHHHHHh
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--DS--HFTHRAWINSL 137 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--d~--~~~~~~~~~~~ 137 (247)
|.+|...+|+.|++...-|++ +|+.+-.+.. ++ .+.+.+|....
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeeccCChhhHHHHHHHHHHh
Confidence 345558999999997765553 3666555553 33 35666666654
No 234
>KOG1752|consensus
Probab=64.17 E-value=28 Score=25.38 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
|+.|- -+|||+|.+ ++++..+ .++....|-.|.
T Consensus 16 VVifS-Ks~C~~c~~----~k~ll~~---~~v~~~vvELD~ 48 (104)
T KOG1752|consen 16 VVIFS-KSSCPYCHR----AKELLSD---LGVNPKVVELDE 48 (104)
T ss_pred EEEEE-CCcCchHHH----HHHHHHh---CCCCCEEEEccC
Confidence 57778 899999998 3333333 255555555554
No 235
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=63.53 E-value=11 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=25.1
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC--C--ChHhHHHHHHH
Q psy15453 89 FYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--D--SHFTHRAWINS 136 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--d--~~~~~~~~~~~ 136 (247)
+|...+|+.|++...-|++. |+.+-.|+. + ..+...++...
T Consensus 3 iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 3 IYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred EEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCCCCHHHHHHHHHh
Confidence 44489999999887666643 555555543 2 23455555553
No 236
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=62.82 E-value=17 Score=26.78 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=28.4
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC--CC--hHhHHHHHHHh
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--DS--HFTHRAWINSL 137 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--d~--~~~~~~~~~~~ 137 (247)
|.+|...+|+.|++....|++ +|+.+-.+.. ++ .+++.+|.+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~ 49 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLT 49 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHh
Confidence 344548999999987776664 3666656654 32 45667777654
No 237
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=62.29 E-value=27 Score=30.13 Aligned_cols=93 Identities=12% Similarity=0.154 Sum_probs=52.7
Q ss_pred ccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHH
Q psy15453 54 VVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAW 133 (247)
Q Consensus 54 ~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~ 133 (247)
+.=+.+|-|++ +|.+|+++-.+.-.|..+.-.|+ ..- ..-.+.+.+|++...+. ..+++|+.|+.+......
T Consensus 77 ekL~~VPVFtI---tn~~G~pvl~s~~~~~~~~gvf~-s~q-edA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl~-- 148 (270)
T TIGR00995 77 KILAGTSVFTV---SNAQNEFVLASDNDGEKSIGLLC-FRQ-EDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKLK-- 148 (270)
T ss_pred HHhcCCceEEE---EcCCCCeEEEECCCCCceEEEEE-CCH-HHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHHh--
Confidence 34467899998 88899998877555543333343 110 01222233333333333 247899999988744331
Q ss_pred HHHhhccccccccCCCCCcceeEEecCCchHHHHhCC
Q psy15453 134 INSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170 (247)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~ 170 (247)
.. ++.|.++.|+. ++..+.++
T Consensus 149 ------------~e---~l~F~fiP~~~-qV~~A~~l 169 (270)
T TIGR00995 149 ------------VE---GIGFRFLPDPA-QIKNALEL 169 (270)
T ss_pred ------------hc---CccEEEeCCHH-HHHHHHHH
Confidence 11 58999998765 44444433
No 238
>KOG2507|consensus
Probab=61.12 E-value=39 Score=31.03 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=27.6
Q ss_pred chHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCC
Q psy15453 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLP 200 (247)
Q Consensus 162 ~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~ 200 (247)
..++..|.+. .+|..|+|+..|+-+.+..|...
T Consensus 67 ~qFs~IYp~v------~vPs~ffIg~sGtpLevitg~v~ 99 (506)
T KOG2507|consen 67 TQFSAIYPYV------SVPSIFFIGFSGTPLEVITGFVT 99 (506)
T ss_pred hhhhhhcccc------cccceeeecCCCceeEEeecccc
Confidence 5677788887 89999999999999988766555
No 239
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=60.72 E-value=64 Score=23.61 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=26.1
Q ss_pred HHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCC-CHHHHHHHHHh
Q psy15453 164 ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGR-SVEETLRLVRA 214 (247)
Q Consensus 164 ~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~-~~~~il~~l~~ 214 (247)
+.+.||+..++. ..|.+.+++.++ -.+. .+... +.+.|.+.++.
T Consensus 65 ~l~~fgl~~~~~--~~P~~~i~~~~~-~KY~----~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 65 ELEEFGLDFSGG--EKPVVAIRTAKG-KKYV----MEEEFSDVDALEEFLED 109 (111)
T ss_pred HHHHcCCCcccC--CCCEEEEEeCCC-CccC----CCcccCCHHHHHHHHHH
Confidence 567788873200 279999998776 3333 22223 56777776654
No 240
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=60.50 E-value=14 Score=27.03 Aligned_cols=41 Identities=17% Similarity=0.443 Sum_probs=26.2
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC--CC--hHhHHHHHHH
Q psy15453 89 FYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--DS--HFTHRAWINS 136 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--d~--~~~~~~~~~~ 136 (247)
+|...+|+.|++...-|++. |+.+-.++. ++ .+++..|...
T Consensus 3 iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDEH-------GVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred EEECCCCHHHHHHHHHHHHc-------CCceEEecccCCcccHHHHHHHHHH
Confidence 44489999999888777653 555555543 32 3455666654
No 241
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=60.45 E-value=45 Score=22.21 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=14.9
Q ss_pred EEEeCCCCCCcHHHHHHHHHH
Q psy15453 88 FFYPLDFTFVCPTEVLALNEK 108 (247)
Q Consensus 88 ~F~~a~~Cp~C~~~~~~l~~l 108 (247)
.++...+||.|.+..-.|.+.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~ 23 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL 23 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc
Confidence 345468999999877766644
No 242
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=58.96 E-value=7.3 Score=20.73 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=7.7
Q ss_pred chhhHHHHHHHHHHhhc
Q psy15453 2 LKYGLSLAVILLYMSSS 18 (247)
Q Consensus 2 ~k~~l~l~~~ll~~~~~ 18 (247)
+|..++..++++..++|
T Consensus 7 mKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44444444444444443
No 243
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=58.83 E-value=25 Score=28.89 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
||-.|.+-.|.-|+.--..|.++.++ .++..|+..+|
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVD 37 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVD 37 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-S
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCC
Confidence 45667699999999999999999877 37888888775
No 244
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=58.16 E-value=78 Score=23.85 Aligned_cols=90 Identities=18% Similarity=0.322 Sum_probs=49.6
Q ss_pred EEEEEeCCCCC--Cc----HHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEec
Q psy15453 86 VFFFYPLDFTF--VC----PTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159 (247)
Q Consensus 86 vl~F~~a~~Cp--~C----~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D 159 (247)
+-.|=|+-+|. +| -.++.++....+.++++|+.+--.+... +-..|.+.- .
T Consensus 4 i~ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~v~RyNL~~--~P~aF~~n~-~-------------------- 60 (123)
T PF06953_consen 4 IEIFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVEVERYNLAQ--NPQAFVENP-E-------------------- 60 (123)
T ss_dssp EEEEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-EEEEEETTT---TTHHHHSH-H--------------------
T ss_pred eEEeccccccccCccCCCCCHHHHHHHHHHHHHHhCCceEEEEcccc--CHHHHHhCH-H--------------------
Confidence 34555677885 55 5689999999999999999888777654 223333310 0
Q ss_pred CCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHH
Q psy15453 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVR 213 (247)
Q Consensus 160 ~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~ 213 (247)
=.++.+.-|.. .+|-+ +| ||+|+.. |..+ +.+++.+++.
T Consensus 61 -V~~~L~~~G~e------~LPit-lV--dGeiv~~--G~YP---t~eEl~~~~~ 99 (123)
T PF06953_consen 61 -VNQLLQTEGAE------ALPIT-LV--DGEIVKT--GRYP---TNEELAEWLG 99 (123)
T ss_dssp -HHHHHHHH-GG------G-SEE-EE--TTEEEEE--SS------HHHHHHHHT
T ss_pred -HHHHHHHcCcc------cCCEE-EE--CCEEEEe--cCCC---CHHHHHHHhC
Confidence 02333444555 67854 44 5889877 3433 3467766653
No 245
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=56.84 E-value=24 Score=26.00 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=26.6
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC----hHhHHHHHHHh
Q psy15453 89 FYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS----HFTHRAWINSL 137 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~----~~~~~~~~~~~ 137 (247)
+|...+|+.|++...-|++ +|+.+-.|+... .++..++....
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~ 48 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL 48 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc
Confidence 3338999999988877765 366666666432 23445555543
No 246
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=56.65 E-value=34 Score=25.09 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=32.4
Q ss_pred eeEEcCCCCC-CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC
Q psy15453 73 KEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 73 ~~v~l~~~~g-k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 124 (247)
+.=.+++|.+ ..-++-|+ .|+.|+ -..+....+++.+.++.+|-++.
T Consensus 26 r~g~F~~y~~~~~elvgf~---~CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 26 RKGAFARYDDEDVELVGFF---TCGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred ccCccccCCCCCeEEEEEe---eCCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 3445667765 57788888 344444 56666677777788999888865
No 247
>KOG3414|consensus
Probab=56.54 E-value=87 Score=23.87 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEE-EEeCC
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVV-GVSVD 125 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl-~Vs~d 125 (247)
.|.+||-|. -.|.|.|...=..|.+...+.. ++.+| .+..|
T Consensus 23 ~rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vs--nfa~Iylvdid 64 (142)
T KOG3414|consen 23 ERLVVIRFG-RDWDPTCMKMDELLSSIAEDVS--NFAVIYLVDID 64 (142)
T ss_pred ceEEEEEec-CCCCchHhhHHHHHHHHHHHHh--hceEEEEEecc
Confidence 579999999 9999999999999999988887 44444 44444
No 248
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=54.29 E-value=47 Score=27.37 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=27.2
Q ss_pred cceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 152 LKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 152 ~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
+.-+++.|-++.+.++||+. ++|+.+- ++|+...+
T Consensus 165 l~~~vYfdQ~g~Lt~rF~I~------~VPavV~--q~g~~l~I 199 (202)
T TIGR02743 165 LDSRIYFDQHGKLTQKFGIK------HVPARVS--QEGLRLRI 199 (202)
T ss_pred hCCceEEcCCchHhhccCce------eeceEEE--ecCCEEEE
Confidence 45567778889999999999 8998664 67776655
No 249
>PRK12559 transcriptional regulator Spx; Provisional
Probab=53.61 E-value=27 Score=26.51 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=27.6
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe--CC--ChHhHHHHHHH
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS--VD--SHFTHRAWINS 136 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs--~d--~~~~~~~~~~~ 136 (247)
|.+|...+|+.|++...-|++ +|+.+-.+. -+ +.+++..|.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 345558999999997765553 355555544 23 35677777775
No 250
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=53.13 E-value=22 Score=28.09 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=31.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCCh
Q psy15453 86 VFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127 (247)
Q Consensus 86 vl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~ 127 (247)
|..|+ ..-||.|-...+.|.++.+++.+-.++...++..+.
T Consensus 2 i~~~~-D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFF-DFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEE-BTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEE-eCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 45555 999999999999999999999544455556655443
No 251
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=51.56 E-value=17 Score=24.81 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=25.8
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 88 FFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 88 ~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
.|+....|+.|......|.++..+ .++.+-.|+.+.
T Consensus 3 ~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~~ 38 (81)
T PF05768_consen 3 TLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDIDE 38 (81)
T ss_dssp EEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETTT
T ss_pred EEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECCC
Confidence 344489999999888888876433 358888888874
No 252
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=46.97 E-value=30 Score=25.81 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=8.9
Q ss_pred CchhhHHHHHHHHHHhh
Q psy15453 1 MLKYGLSLAVILLYMSS 17 (247)
Q Consensus 1 m~k~~l~l~~~ll~~~~ 17 (247)
|+|+.++...+++++.|
T Consensus 1 Mrk~~~~~l~~~lLvGC 17 (123)
T COG5633 1 MRKLCLLSLALLLLVGC 17 (123)
T ss_pred CceehHHHHHHHHhhcc
Confidence 88887733333333333
No 253
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=44.48 E-value=1.4e+02 Score=22.71 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCcEEE--EEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccce
Q psy15453 103 LALNEKIDEFHKIGAEVV--GVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLR 180 (247)
Q Consensus 103 ~~l~~l~~~~~~~~~~vl--~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p 180 (247)
..|+++..+-++.|+.++ |+-.++.......+..... . +-...+.. +..+-++|++. .+|
T Consensus 12 ~~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~------~----~~~~~v~I--dP~lF~~f~I~------~VP 73 (130)
T TIGR02742 12 PLLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIK------D----GGKSGVQI--DPQWFKQFDIT------AVP 73 (130)
T ss_pred HHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHh------c----CCCCcEEE--ChHHHhhcCce------EcC
Confidence 346666666665565443 3333443333333333211 1 11133333 35788999999 899
Q ss_pred eEEEEcCCC
Q psy15453 181 GLFIIDREG 189 (247)
Q Consensus 181 ~~~lId~~G 189 (247)
+++++..+.
T Consensus 74 a~V~~~~~~ 82 (130)
T TIGR02742 74 AFVVVKDGL 82 (130)
T ss_pred EEEEECCCC
Confidence 998886553
No 254
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=44.41 E-value=52 Score=21.39 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=18.3
Q ss_pred EeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC
Q psy15453 90 YPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV 124 (247)
Q Consensus 90 ~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~ 124 (247)
|...+||.|.+..-.|.+. +..++++-|+.
T Consensus 4 y~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~ 33 (71)
T cd03060 4 YSFRRCPYAMRARMALLLA-----GITVELREVEL 33 (71)
T ss_pred EecCCCcHHHHHHHHHHHc-----CCCcEEEEeCC
Confidence 3378999998876666543 22345555544
No 255
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=43.43 E-value=54 Score=24.88 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=28.1
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeC--C--ChHhHHHHHHHh
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSV--D--SHFTHRAWINSL 137 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~--d--~~~~~~~~~~~~ 137 (247)
|.+|...+|+.|++...-|+ ++|+.+-.+.. + +.+++..|.+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~-------~~~i~~~~~d~~~~~~s~~eL~~~l~~~ 49 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLN-------AHQLSYKEQNLGKEPLTKEEILAILTKT 49 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HcCCCeEEEECCCCCCCHHHHHHHHHHh
Confidence 34554899999998654444 44666666653 2 346777877754
No 256
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=40.69 E-value=52 Score=28.41 Aligned_cols=85 Identities=15% Similarity=0.236 Sum_probs=40.9
Q ss_pred CCCCCCceeeeeecCCceeEEcCCCC--CCeEEEEEEeCCCCCCcHHHHHHH-HHHHHHHH--hcCcEEEEEeCCChHhH
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDYR--GKYLVFFFYPLDFTFVCPTEVLAL-NEKIDEFH--KIGAEVVGVSVDSHFTH 130 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~~--gk~vvl~F~~a~~Cp~C~~~~~~l-~~l~~~~~--~~~~~vl~Vs~d~~~~~ 130 (247)
=+.+|-|.+ +|.+|.++-.+.-. ++.+. .|| .|+.+...+ +++..... ..+++|+.|+.+....+
T Consensus 72 L~~VPVF~i---tn~~G~p~l~~~~~~~~~~v~-~~F------~s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 72 LAGVPVFTI---TNSQGEPVLVSGPDQGGKSVG-LFF------FSQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQL 141 (274)
T ss_dssp HTTSEEEEE---E-TT--B-----TTS--SEEE-EEE------S-HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHH
T ss_pred hcCceEEEE---ECCCCCEEEeccCCCCCceEE-EEE------ecHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHH
Confidence 367888997 88999998776654 45544 445 355554444 33333221 45899999999765443
Q ss_pred HHHHHHhhccccccccCCCCCcceeEEecCC
Q psy15453 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161 (247)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 161 (247)
.. +. +....+..|.++.|+.
T Consensus 142 ~~---~~--------~~k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 142 AQ---EN--------KKKPEGLQFRFVPDPK 161 (274)
T ss_dssp HH---HT--------TT-TT-EEEEEE--HH
T ss_pred HH---Hh--------hcCCcCceEEEcCCHH
Confidence 22 11 1122368899998765
No 257
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=39.55 E-value=78 Score=20.22 Aligned_cols=20 Identities=20% Similarity=0.029 Sum_probs=14.7
Q ss_pred EEeCCCCCCcHHHHHHHHHH
Q psy15453 89 FYPLDFTFVCPTEVLALNEK 108 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~~l 108 (247)
+|...+||.|++..-.|...
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc
Confidence 34377899999887777654
No 258
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=38.60 E-value=91 Score=18.89 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.5
Q ss_pred cceeEEEEcCCCcEEEEE
Q psy15453 178 SLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 178 ~~p~~~lId~~G~v~~~~ 195 (247)
......|+|.+|+++++.
T Consensus 29 ~~~~~~V~d~~~~~~G~i 46 (57)
T PF00571_consen 29 GISRLPVVDEDGKLVGII 46 (57)
T ss_dssp TSSEEEEESTTSBEEEEE
T ss_pred CCcEEEEEecCCEEEEEE
Confidence 567899999999999876
No 259
>PRK12359 flavodoxin FldB; Provisional
Probab=37.84 E-value=1.2e+02 Score=24.24 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=17.2
Q ss_pred EEEEcCCCcEEEEEecCCC-CCCCHHHHHHHHHhhh
Q psy15453 182 LFIIDREGIVRQITLNDLP-VGRSVEETLRLVRAFQ 216 (247)
Q Consensus 182 ~~lId~~G~v~~~~~~~~~-~~~~~~~il~~l~~l~ 216 (247)
.-++|.+++.+..-.-+.. ....-+.|-++++.+.
T Consensus 130 ~a~~~~~~~f~gl~lD~~nq~~~t~~ri~~W~~~~~ 165 (172)
T PRK12359 130 KPLTADGQLFVGLALDEVNQYDLSDERIQQWCEQIL 165 (172)
T ss_pred eeeEcCCCEEEEEEEcCCCchhhhHHHHHHHHHHHH
Confidence 4456444556665533332 2223455666666554
No 260
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=37.72 E-value=1.1e+02 Score=23.50 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
..|.+||-|. -.|-|.|...=.-|.+.+++.++ =+.+..|..+.
T Consensus 19 ~drvvViRFG-~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~ 62 (133)
T PF02966_consen 19 EDRVVVIRFG-RDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDE 62 (133)
T ss_dssp SSSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT
T ss_pred CceEEEEEeC-CCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEccc
Confidence 3689999999 89999999988889999888863 34555555553
No 261
>PRK09810 entericidin A; Provisional
Probab=37.68 E-value=30 Score=20.75 Aligned_cols=19 Identities=5% Similarity=0.072 Sum_probs=7.8
Q ss_pred CchhhHHHHHHHHHHhhcc
Q psy15453 1 MLKYGLSLAVILLYMSSSS 19 (247)
Q Consensus 1 m~k~~l~l~~~ll~~~~~~ 19 (247)
|+|..+++.++++.+++|.
T Consensus 2 Mkk~~~l~~~~~~~L~aCN 20 (41)
T PRK09810 2 MKRLIVLVLLASTLLTGCN 20 (41)
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 3444444433333344444
No 262
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=36.80 E-value=75 Score=19.67 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=20.2
Q ss_pred EEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 182 LFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 182 ~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
.|.|++||+|..-..|-.+.. =.++.+.|++.
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~--C~~~t~~lE~~ 33 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSS--CLEATAALEEA 33 (48)
T ss_pred EEEECCCcEEEEEEEeccChh--HHHHHHHHHHH
Confidence 478999999998775544422 24555555443
No 263
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.58 E-value=40 Score=26.66 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.4
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHH
Q psy15453 88 FFYPLDFTFVCPTEVLALNEKIDEFH 113 (247)
Q Consensus 88 ~F~~a~~Cp~C~~~~~~l~~l~~~~~ 113 (247)
.||.-..||.|-...+.|.++.++|+
T Consensus 4 ~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 4 YYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEECCCCchhhCchHHHHHHHHHhC
Confidence 34449999999999999999999984
No 264
>KOG4614|consensus
Probab=36.52 E-value=44 Score=28.26 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=24.2
Q ss_pred eeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 180 RGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 180 p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
=..|+||+.|+|++...|... ....+++...++-|
T Consensus 249 GyV~L~D~s~kIRW~g~G~aT-p~Eve~L~~~~k~L 283 (287)
T KOG4614|consen 249 GYVLLLDKSGKIRWQGFGTAT-PEEVEQLLSCTKLL 283 (287)
T ss_pred EEEEEEccCceEEEeecCCCC-HHHHHHHHHHHHHH
Confidence 357999999999999766543 33456666655544
No 265
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=36.51 E-value=71 Score=20.72 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=23.9
Q ss_pred ceeEEEEcCCCcEEEEEecCCC-CCCCHHHHHHHHHhhh
Q psy15453 179 LRGLFIIDREGIVRQITLNDLP-VGRSVEETLRLVRAFQ 216 (247)
Q Consensus 179 ~p~~~lId~~G~v~~~~~~~~~-~~~~~~~il~~l~~l~ 216 (247)
.--.|.||++|+|....+-..+ ...--+++++.++...
T Consensus 12 v~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~~ 50 (74)
T TIGR01352 12 VVVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKAR 50 (74)
T ss_pred EEEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhCC
Confidence 4567999999999987643322 2222345566666654
No 266
>KOG0913|consensus
Probab=35.80 E-value=7.9 Score=32.52 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=26.5
Q ss_pred CCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcE
Q psy15453 81 RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAE 118 (247)
Q Consensus 81 ~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~ 118 (247)
.|.+ +|.|+ ++|||.|..-.+.+.....-=.+.++.
T Consensus 39 ~gew-mi~~~-ap~~psc~~~~~~~~~~a~~s~dL~v~ 74 (248)
T KOG0913|consen 39 TGEW-MIEFG-APWCPSCSDLIPHLENFATVSLDLGVK 74 (248)
T ss_pred chHH-HHHhc-CCCCccccchHHHHhccCCccCCCcee
Confidence 3555 68888 999999999999998776543333443
No 267
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=35.33 E-value=2.1e+02 Score=22.06 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=25.8
Q ss_pred CCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 82 gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
.|+-.+.+| -.-|+.|..+...|.+.- +.+.+++.++
T Consensus 6 ~~p~~vvly-DG~C~lC~~~vrfLi~~D---~~~~i~f~~~ 42 (137)
T COG3011 6 KKPDLVVLY-DGVCPLCDGWVRFLIRRD---QGGRIRFAAL 42 (137)
T ss_pred CCCCEEEEE-CCcchhHHHHHHHHHHhc---cCCcEEEEec
Confidence 467778888 999999999877776541 2234555554
No 268
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=35.32 E-value=1.7e+02 Score=23.67 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=51.6
Q ss_pred ccccCCCCCCceeeeeecCCceeEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHh
Q psy15453 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFT 129 (247)
Q Consensus 52 ~~~~G~~~P~f~l~~~~d~~G~~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~ 129 (247)
.+.+.+.+|++.+ |-+=.+-.+|-|+++ +.+.-|-..+....+|.+.+++++..|..++....=.+-+
T Consensus 7 ~V~i~~~~p~i~~------DlrYat~~NF~g~~i----Y~~~~c~l~~~aA~aL~~a~~~l~~~G~~L~I~D~yRP~~ 74 (184)
T PRK10178 7 LVEITVAFHGVEI------DLKYATADNLTGKPI----YREARCLLHKDAEAALRKAVSIAQLAGLTLRIYDAYRPQQ 74 (184)
T ss_pred cEEeeecCCCCEE------EeeeccCCCcCCCcc----ccCCeEEECHHHHHHHHHHHHHHHhCCCeEEEEeccCCHH
Confidence 4566677888885 334556678899986 4467787888889999999999998899998887654433
No 269
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=34.71 E-value=46 Score=22.03 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=23.7
Q ss_pred ceeEEEEcCCCcEEEEEecCC-CCCCCHHHHHHHHHhh
Q psy15453 179 LRGLFIIDREGIVRQITLNDL-PVGRSVEETLRLVRAF 215 (247)
Q Consensus 179 ~p~~~lId~~G~v~~~~~~~~-~~~~~~~~il~~l~~l 215 (247)
.--.|.||++|+|..+.+-.. +...--+++++.++..
T Consensus 18 v~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~~ 55 (79)
T PF03544_consen 18 VVVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKKW 55 (79)
T ss_dssp EEEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC-
T ss_pred EEEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHhC
Confidence 456789999999998764332 2233456666666663
No 270
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=34.07 E-value=91 Score=22.52 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=27.7
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe--CC--ChHhHHHHHHHh
Q psy15453 89 FYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS--VD--SHFTHRAWINSL 137 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs--~d--~~~~~~~~~~~~ 137 (247)
+|...+|+.|++...-|.+. |+.+-.+. -+ +.+++..|....
T Consensus 3 iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 3 LYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred EEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccCCCCHHHHHHHHHHh
Confidence 44489999999977766643 55544444 23 356777777754
No 271
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=33.84 E-value=66 Score=27.10 Aligned_cols=57 Identities=16% Similarity=0.042 Sum_probs=34.5
Q ss_pred ecCCceeEEcCCC--CCCeE--E--E------EEEeCCCCCCcHHH-HHH--HHHHHHHHHhcCcEEEEEeCC
Q psy15453 68 VDGNIKEIKLTDY--RGKYL--V--F------FFYPLDFTFVCPTE-VLA--LNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 68 ~d~~G~~v~l~~~--~gk~v--v--l------~F~~a~~Cp~C~~~-~~~--l~~l~~~~~~~~~~vl~Vs~d 125 (247)
.|-||..++-+.+ .|+.. - + .|| ..|+..|..+ .|. ..++.+.++++|+.+..||.-
T Consensus 68 FDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w-~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTnr 139 (237)
T TIGR01672 68 FDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFW-EKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTGR 139 (237)
T ss_pred EeCCCccccCcHHHhCCcccCCHHHhhhhcChHHH-HHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeCC
Confidence 4557777777663 44321 1 0 345 5555544322 333 677778888889999888764
No 272
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=32.71 E-value=1.1e+02 Score=20.11 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=17.5
Q ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 89 FYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
+|....|+.|.+-.-.|.+. +..++++.+...
T Consensus 3 ly~~~~s~~s~rv~~~L~e~-----gl~~e~~~v~~~ 34 (73)
T cd03052 3 LYHWTQSFSSQKVRLVIAEK-----GLRCEEYDVSLP 34 (73)
T ss_pred EecCCCCccHHHHHHHHHHc-----CCCCEEEEecCC
Confidence 34367788887665444432 223556665543
No 273
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=32.35 E-value=33 Score=24.78 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=13.2
Q ss_pred CchhhHHHHHHHHHHhhcc
Q psy15453 1 MLKYGLSLAVILLYMSSSS 19 (247)
Q Consensus 1 m~k~~l~l~~~ll~~~~~~ 19 (247)
|+|..+..++.+++..|.+
T Consensus 1 mKk~ll~~~lallLtgCat 19 (97)
T PF06291_consen 1 MKKLLLAAALALLLTGCAT 19 (97)
T ss_pred CcHHHHHHHHHHHHcccce
Confidence 7888877777766655554
No 274
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=32.05 E-value=2.1e+02 Score=21.01 Aligned_cols=68 Identities=16% Similarity=0.245 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCcEEE--EEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccce
Q psy15453 103 LALNEKIDEFHKIGAEVV--GVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLR 180 (247)
Q Consensus 103 ~~l~~l~~~~~~~~~~vl--~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p 180 (247)
..|.++..+..+.|+.++ |+..+.-....+++..... .. .....+..| ..+-++|++. .+|
T Consensus 11 ~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~------~~---~~~~~v~Id--P~~F~~y~I~------~VP 73 (113)
T PF09673_consen 11 ASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLR------KD---DPCPGVQID--PRLFRQYNIT------AVP 73 (113)
T ss_pred HHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhh------cc---CCCcceeEC--hhHHhhCCce------EcC
Confidence 346666666666566554 4444443344444443322 11 111344444 5688999999 899
Q ss_pred eEEEEcC
Q psy15453 181 GLFIIDR 187 (247)
Q Consensus 181 ~~~lId~ 187 (247)
++++...
T Consensus 74 a~V~~~~ 80 (113)
T PF09673_consen 74 AFVVVKD 80 (113)
T ss_pred EEEEEcC
Confidence 8888865
No 275
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=31.45 E-value=3.1e+02 Score=24.79 Aligned_cols=43 Identities=9% Similarity=0.336 Sum_probs=26.8
Q ss_pred CchHHHHhCCcccCCCccceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhh
Q psy15453 161 THEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAF 215 (247)
Q Consensus 161 ~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l 215 (247)
+..+++++|+. ..++.|+. ++|+++... |..+ .+-+++.|-.+
T Consensus 101 d~klAKKLgv~------E~~SiyVf-kd~~~IEyd-G~~s----aDtLVeFl~dl 143 (383)
T PF01216_consen 101 DAKLAKKLGVE------EEGSIYVF-KDGEVIEYD-GERS----ADTLVEFLLDL 143 (383)
T ss_dssp THHHHHHHT--------STTEEEEE-ETTEEEEE--S--S----HHHHHHHHHHH
T ss_pred HHHHHHhcCcc------ccCcEEEE-ECCcEEEec-CccC----HHHHHHHHHHh
Confidence 46899999998 67889998 678888665 5444 45555555443
No 276
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=31.19 E-value=1.1e+02 Score=20.72 Aligned_cols=40 Identities=18% Similarity=0.070 Sum_probs=20.8
Q ss_pred cceeEEEEcCCCcEEEEEecCC-CCCCCHHHHHHHHHhhhc
Q psy15453 178 SLRGLFIIDREGIVRQITLNDL-PVGRSVEETLRLVRAFQY 217 (247)
Q Consensus 178 ~~p~~~lId~~G~v~~~~~~~~-~~~~~~~~il~~l~~l~~ 217 (247)
..--.+-||++|+|..+..... +...--+.+++.|+....
T Consensus 27 ~~~V~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai~~~~p 67 (85)
T PF13103_consen 27 SVTVRITIDPDGRVISVRIVKSSGNPAFDAAVRRAIRRASP 67 (85)
T ss_dssp -EEEEEEE-TTSBEEEEEEEE--S-HHHHHHHHHHHHHH-B
T ss_pred EEEEEEEECCCCCEEEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 4556889999999976653333 222222444455655443
No 277
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=31.07 E-value=2e+02 Score=20.70 Aligned_cols=19 Identities=11% Similarity=0.039 Sum_probs=15.0
Q ss_pred eEEEEcCCCcEEEEEecCC
Q psy15453 181 GLFIIDREGIVRQITLNDL 199 (247)
Q Consensus 181 ~~~lId~~G~v~~~~~~~~ 199 (247)
..++.||+|..+.++.++.
T Consensus 103 ~~~f~DPdG~~iE~~~~~~ 121 (124)
T cd08361 103 FIAFRDPSGNSIELVVRPS 121 (124)
T ss_pred EEEEECcCCCEEEEEEeee
Confidence 5789999999988875543
No 278
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=30.85 E-value=1.3e+02 Score=19.27 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=13.6
Q ss_pred EEeCCCCCCcHHHHHHHHHH
Q psy15453 89 FYPLDFTFVCPTEVLALNEK 108 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~~l 108 (247)
+|....||.|++-.-.|.+.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~ 22 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL 22 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc
Confidence 34378899998766666543
No 279
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.83 E-value=1.8e+02 Score=20.03 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=26.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCChHhHHHHHH
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWIN 135 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~~~~~~~~~~ 135 (247)
..|+ +..||.|......|.++.= +++.|-|.. +-...++|..
T Consensus 5 ~lfg-sn~Cpdca~a~eyl~rl~v-----~yd~VeIt~-Sm~NlKrFl~ 46 (85)
T COG4545 5 KLFG-SNLCPDCAPAVEYLERLNV-----DYDFVEITE-SMANLKRFLH 46 (85)
T ss_pred eeec-cccCcchHHHHHHHHHcCC-----Cceeeehhh-hhhhHHHHHh
Confidence 4577 9999999988877776632 334444432 3345666665
No 280
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=30.58 E-value=1.9e+02 Score=20.66 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.0
Q ss_pred ceeEEEEcCCCcEEEEEe
Q psy15453 179 LRGLFIIDREGIVRQITL 196 (247)
Q Consensus 179 ~p~~~lId~~G~v~~~~~ 196 (247)
....++.||+|..+.+..
T Consensus 103 ~~~~~f~DPdG~~iEl~~ 120 (123)
T cd08351 103 GRGVYFLDPDGHLLEIIT 120 (123)
T ss_pred eeEEEEECCCCCEEEEEe
Confidence 368999999999987763
No 281
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=30.30 E-value=16 Score=28.17 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.6
Q ss_pred EEeCCCCCCcHHHHHHHH
Q psy15453 89 FYPLDFTFVCPTEVLALN 106 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~ 106 (247)
|-+..-||+|+..+|+|.
T Consensus 6 FGpei~CPhCRQ~ipALt 23 (163)
T TIGR02652 6 FGPEIRCPHCRQNIPALT 23 (163)
T ss_pred cCCcCcCchhhcccchhe
Confidence 566788999999999986
No 282
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=29.45 E-value=2e+02 Score=20.12 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=14.7
Q ss_pred eeEEEEcCCCcEEEEEec
Q psy15453 180 RGLFIIDREGIVRQITLN 197 (247)
Q Consensus 180 p~~~lId~~G~v~~~~~~ 197 (247)
...++.||+|..+.+..+
T Consensus 100 ~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 100 YGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred eEEEEECCCCCEEEEEec
Confidence 368999999999988744
No 283
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=29.37 E-value=1.6e+02 Score=22.34 Aligned_cols=10 Identities=30% Similarity=0.165 Sum_probs=6.8
Q ss_pred CchhhHHHHH
Q psy15453 1 MLKYGLSLAV 10 (247)
Q Consensus 1 m~k~~l~l~~ 10 (247)
|+|+.++.++
T Consensus 1 MKK~~~~~~~ 10 (126)
T TIGR00156 1 MKFQAIVLAS 10 (126)
T ss_pred CchHHHHHHH
Confidence 7877766555
No 284
>PRK10026 arsenate reductase; Provisional
Probab=28.98 E-value=1.9e+02 Score=22.27 Aligned_cols=44 Identities=9% Similarity=0.016 Sum_probs=28.7
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe--CC--ChHhHHHHHHHh
Q psy15453 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS--VD--SHFTHRAWINSL 137 (247)
Q Consensus 87 l~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs--~d--~~~~~~~~~~~~ 137 (247)
|.+|....|.-|++...-|++. |+.+-.+. -+ +.+++..|....
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-------gi~~~~~d~~~~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-------GTEPTIIHYLETPPTRDELVKLIADM 51 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEeeeCCCcCHHHHHHHHHhC
Confidence 4455589999999887777654 55544443 33 356777887754
No 285
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=27.99 E-value=17 Score=27.91 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.3
Q ss_pred EEeCCCCCCcHHHHHHHH
Q psy15453 89 FYPLDFTFVCPTEVLALN 106 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~ 106 (247)
|-+..-||+|+..+|+|.
T Consensus 3 FGpei~CPhCRq~ipALt 20 (161)
T PF09654_consen 3 FGPEIQCPHCRQTIPALT 20 (161)
T ss_pred cCCcCcCchhhcccchhe
Confidence 456678999999999986
No 286
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=27.88 E-value=2.6e+02 Score=21.65 Aligned_cols=26 Identities=12% Similarity=-0.081 Sum_probs=17.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC
Q psy15453 94 FTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126 (247)
Q Consensus 94 ~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~ 126 (247)
+||.|.+.-.-|+++ ++.+--++.+.
T Consensus 15 t~~~C~~ak~iL~~~-------~V~~~e~DVs~ 40 (147)
T cd03031 15 TFEDCNNVRAILESF-------RVKFDERDVSM 40 (147)
T ss_pred cChhHHHHHHHHHHC-------CCcEEEEECCC
Confidence 899998766655533 67766666654
No 287
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=27.45 E-value=3.1e+02 Score=21.59 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=38.1
Q ss_pred eEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCCC---hHhHHHHHHHh
Q psy15453 74 EIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS---HFTHRAWINSL 137 (247)
Q Consensus 74 ~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d~---~~~~~~~~~~~ 137 (247)
+++.+|..|...-+ +. ..|+ -+-..+++.+++++|..++.++.-+ ....+.|...+
T Consensus 9 TiT~SD~~G~i~~~-~G-~d~~------h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 9 TITKSDVLGHILPI-LG-KDWT------HPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred CcCccchhhhhhhc-cC-chhh------hhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 67778877764222 22 2343 4556788889999999999998765 34567777765
No 288
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=27.11 E-value=84 Score=23.22 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=29.6
Q ss_pred eEEcCCCCCCeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEE
Q psy15453 74 EIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122 (247)
Q Consensus 74 ~v~l~~~~gk~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~V 122 (247)
.+.+.+..|..++|.=- ..-|+.|+--|....+ + -|+.|+.-
T Consensus 58 ~l~~~~~~Gd~m~I~G~-ypPC~~CkG~Mr~~s~---~---~g~~I~Y~ 99 (118)
T PF14427_consen 58 DLPLNQVPGDRMLIDGQ-YPPCNSCKGKMRRASE---K---SGATIQYT 99 (118)
T ss_pred hcCccccCCceEEEeee-cCCCchhHHHHHHhhh---c---cCcEEEEe
Confidence 35566677999888888 8889999987765542 2 35666554
No 289
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=25.85 E-value=82 Score=19.31 Aligned_cols=17 Identities=29% Similarity=0.073 Sum_probs=12.5
Q ss_pred CCCCCCcHHHHHHHHHH
Q psy15453 92 LDFTFVCPTEVLALNEK 108 (247)
Q Consensus 92 a~~Cp~C~~~~~~l~~l 108 (247)
..+||.|.+....|...
T Consensus 6 ~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 6 FPGSPRSLRVRLALEEK 22 (71)
T ss_pred CCCCccHHHHHHHHHHc
Confidence 67899999776666544
No 290
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=25.36 E-value=1.5e+02 Score=18.87 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=13.0
Q ss_pred EEeCCCCCCcHHHHHHHH
Q psy15453 89 FYPLDFTFVCPTEVLALN 106 (247)
Q Consensus 89 F~~a~~Cp~C~~~~~~l~ 106 (247)
+|...+||.|.+..-.|.
T Consensus 3 ly~~~~~~~~~~v~~~l~ 20 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLA 20 (73)
T ss_pred EEECCCChhHHHHHHHHH
Confidence 343778999998866664
No 291
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=24.75 E-value=1.9e+02 Score=21.87 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=14.7
Q ss_pred cceeEEEEcCCCcEEEEE
Q psy15453 178 SLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 178 ~~p~~~lId~~G~v~~~~ 195 (247)
.+-.++++|++|++++..
T Consensus 49 ~~d~~~~~d~~g~~~~~~ 66 (161)
T PF05228_consen 49 GLDLIFILDPDGRVLYSS 66 (161)
T ss_pred CccEEEEEcCCCCEEEEe
Confidence 345899999999999843
No 292
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=24.53 E-value=1.5e+02 Score=20.35 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=10.1
Q ss_pred eeEEEEcCCCcEEEE
Q psy15453 180 RGLFIIDREGIVRQI 194 (247)
Q Consensus 180 p~~~lId~~G~v~~~ 194 (247)
..+++.||+|.++.+
T Consensus 93 ~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 93 RSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred EEEEEECCCCCEEEe
Confidence 578899999987754
No 293
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=24.31 E-value=2.2e+02 Score=21.64 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=18.1
Q ss_pred CCCCCCceeeeeecCCceeEEcCCCC
Q psy15453 56 MKPAPYWKGTAVVDGNIKEIKLTDYR 81 (247)
Q Consensus 56 G~~~P~f~l~~~~d~~G~~v~l~~~~ 81 (247)
+..-|+|..-.+++.+|..+...+++
T Consensus 55 e~ve~~fs~~~l~~~d~~~v~t~~~~ 80 (127)
T COG2372 55 EGVEPGFSGAKLTGPDGEEVATAGTK 80 (127)
T ss_pred CccCCCcceeEEECCCCCccccCccc
Confidence 34456677666788888888877653
No 294
>PRK10449 heat-inducible protein; Provisional
Probab=23.80 E-value=62 Score=24.81 Aligned_cols=19 Identities=32% Similarity=0.190 Sum_probs=12.8
Q ss_pred CchhhHHHHHHHHHHhhcc
Q psy15453 1 MLKYGLSLAVILLYMSSSS 19 (247)
Q Consensus 1 m~k~~l~l~~~ll~~~~~~ 19 (247)
|+|+.+++++.+++++|.+
T Consensus 1 mk~~~~~~~~~~~l~~C~~ 19 (140)
T PRK10449 1 MKKVVALVALSLLMAGCVS 19 (140)
T ss_pred ChhHHHHHHHHHHHHHhcC
Confidence 7887776666666665554
No 295
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.41 E-value=2.2e+02 Score=20.11 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=31.5
Q ss_pred cEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 117 AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 117 ~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
..-+++++++.++..++.+.... . ...+..++... ..++. ..-..|+-||+|..+.+.
T Consensus 65 ~~hi~f~v~~~~~v~~~~~~~~~-------~-----g~~~~~~~~~~--~~~~~-------~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 65 GTHVAFAAPSREAVDAFHAAALA-------A-----GGTDEGAPGLR--PHYGP-------GYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred ceEEEEECCCHHHHHHHHHHHHH-------c-----CCccCCCCCCC--CCCCC-------CeEEEEEECCCCCEEEEe
Confidence 45678888877777776665432 1 12222221100 00011 223689999999988653
No 296
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=23.20 E-value=46 Score=33.31 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=29.8
Q ss_pred eeEEEEcCCCcEEEEEecCC---CCCCCHHHHHHHHHhhhc---ccccCCccCCCCcCCCcccc
Q psy15453 180 RGLFIIDREGIVRQITLNDL---PVGRSVEETLRLVRAFQY---TDEHGEACPSGWQPGQRTIS 237 (247)
Q Consensus 180 p~~~lId~~G~v~~~~~~~~---~~~~~~~~il~~l~~l~~---~~~~~~~~~~~~~~~~~~~~ 237 (247)
|-.-+||.+|++... .+.. ....-.+.+++.|+.... .....+..|.+|+=|+....
T Consensus 290 ~~~~~i~~~G~~~~~-~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~~v~~ 352 (800)
T PRK13208 290 PTRIIIDEDGRMTEA-AGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDTPLEI 352 (800)
T ss_pred CcccccCCCceEecC-CcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCCEEEE
Confidence 455678999987632 1222 212223445555544322 22234566888887766543
No 297
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=22.66 E-value=1.8e+02 Score=18.66 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=7.2
Q ss_pred CchhhHHHHHHHHHH
Q psy15453 1 MLKYGLSLAVILLYM 15 (247)
Q Consensus 1 m~k~~l~l~~~ll~~ 15 (247)
|++.+..+++++++.
T Consensus 1 mk~~~~s~~ala~l~ 15 (58)
T COG5567 1 MKNVFKSLLALATLF 15 (58)
T ss_pred ChhHHHHHHHHHHHH
Confidence 565555444444333
No 298
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=22.40 E-value=94 Score=24.03 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=19.8
Q ss_pred eEEcCCCCCCeEEEEEEeCCC---CCCcHH
Q psy15453 74 EIKLTDYRGKYLVFFFYPLDF---TFVCPT 100 (247)
Q Consensus 74 ~v~l~~~~gk~vvl~F~~a~~---Cp~C~~ 100 (247)
-+++-|+-|++.++.|+ +-| |+.|..
T Consensus 6 ~~~~~d~p~~~~~~vfl-~GCnlrC~~C~n 34 (147)
T TIGR02826 6 IIVFQEVPNEYSLAFYI-TGCPLGCKGCHS 34 (147)
T ss_pred eEEEeecCCCEEEEEEe-CCCCCCCCCCCC
Confidence 45777888998888888 644 888854
No 299
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=22.25 E-value=3.1e+02 Score=19.81 Aligned_cols=62 Identities=16% Similarity=0.049 Sum_probs=36.0
Q ss_pred cCcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEE
Q psy15453 115 IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQI 194 (247)
Q Consensus 115 ~~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~ 194 (247)
.++.-+++.++..++..++.+.... ..++++.++.. ..++ .....++.||+|.++.+
T Consensus 58 ~~~~hl~~~v~d~~~~~~~~~~l~~------------~G~~i~~~~~~---~~~~--------~~~~~~~~DPdG~~iei 114 (131)
T cd08343 58 PGLHHVAFEVESLDDILRAADRLAA------------NGIQIEFGPGR---HGPG--------NNLFLYFRDPDGNRVEL 114 (131)
T ss_pred CCeeEEEEEcCCHHHHHHHHHHHHH------------cCCeeEECCCc---cCCC--------CcEEEEEECCCCCEEEE
Confidence 3566678778776655555554432 34455543321 1111 12357999999999988
Q ss_pred EecCC
Q psy15453 195 TLNDL 199 (247)
Q Consensus 195 ~~~~~ 199 (247)
..+..
T Consensus 115 ~~~~~ 119 (131)
T cd08343 115 SAEMY 119 (131)
T ss_pred EcCCc
Confidence 74433
No 300
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=21.67 E-value=85 Score=25.76 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=34.5
Q ss_pred eEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEe-CCChHhHHHHHHHh
Q psy15453 84 YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVS-VDSHFTHRAWINSL 137 (247)
Q Consensus 84 ~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs-~d~~~~~~~~~~~~ 137 (247)
-.+..|. -..|+.|...+..+.. ....+.+..|. ..+.+.+..|...+
T Consensus 110 ~rlalFv-kd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~ 158 (200)
T TIGR03759 110 GRLALFV-KDDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRH 158 (200)
T ss_pred CeEEEEe-CCCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHc
Confidence 4467777 6999999998888854 23356666664 55677889998854
No 301
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=21.43 E-value=2.3e+02 Score=22.96 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHHhhcc
Q psy15453 3 KYGLSLAVILLYMSSSS 19 (247)
Q Consensus 3 k~~l~l~~~ll~~~~~~ 19 (247)
+..++.++++++..|.+
T Consensus 9 ~~~l~~~laflLsgC~t 25 (191)
T COG3065 9 KGALIGTLAFLLSGCVT 25 (191)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 33444445455555544
No 302
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=21.13 E-value=3.1e+02 Score=19.42 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=15.3
Q ss_pred eeEEEEcCCCcEEEEEecC
Q psy15453 180 RGLFIIDREGIVRQITLND 198 (247)
Q Consensus 180 p~~~lId~~G~v~~~~~~~ 198 (247)
..+++.||+|..+.++.++
T Consensus 100 ~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 100 GLIRFADPDGNRHELFWGP 118 (120)
T ss_pred EEEEEECCCCCEEEEEecc
Confidence 4689999999999887543
No 303
>KOG2116|consensus
Probab=20.83 E-value=4e+02 Score=26.24 Aligned_cols=34 Identities=9% Similarity=0.237 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCcEEEEEeC---CChHhHHHHHHHhh
Q psy15453 105 LNEKIDEFHKIGAEVVGVSV---DSHFTHRAWINSLK 138 (247)
Q Consensus 105 l~~l~~~~~~~~~~vl~Vs~---d~~~~~~~~~~~~~ 138 (247)
+.+||.+.++.|+++|..|. ......+.|++.+.
T Consensus 563 VAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~ 599 (738)
T KOG2116|consen 563 VAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVE 599 (738)
T ss_pred HHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHh
Confidence 57889999999999999985 33455666666553
No 304
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins. The region in question is approximately 130 amino acids long.
Probab=20.66 E-value=3.3e+02 Score=20.25 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=30.9
Q ss_pred cceeEEEEcCCCcEEEEEecCCCCCCCHHHHHHHHHhhh
Q psy15453 178 SLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216 (247)
Q Consensus 178 ~~p~~~lId~~G~v~~~~~~~~~~~~~~~~il~~l~~l~ 216 (247)
..|.++-+-..|+..|++ |.++...+.++|+.....-.
T Consensus 53 ~r~CtVA~~~~gK~tYlf-Gdl~p~~~a~~il~~a~~Y~ 90 (116)
T PF07845_consen 53 DRPCTVALQAPGKWTYLF-GDLDPDEDAEDILAFAALYA 90 (116)
T ss_pred CCceEEEEEcCCCcEEEE-ecCCcccCHHHHHHHHHHHH
Confidence 347888888999999998 77777688999998887654
No 305
>PRK06724 hypothetical protein; Provisional
Probab=20.33 E-value=3.6e+02 Score=19.84 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=33.9
Q ss_pred CcEEEEEeCCChHhHHHHHHHhhccccccccCCCCCcceeEEecCCchHHHHhCCcccCCCccceeEEEEcCCCcEEEEE
Q psy15453 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQIT 195 (247)
Q Consensus 116 ~~~vl~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~~~~~~~g~~~p~~~lId~~G~v~~~~ 195 (247)
+..=+++.+.+.++..++.+.... ...+++..+... ..++ . ...+.++-||+|..+...
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~------------~G~~~~~~p~~~--~~~~-~------g~~~~~f~DPdG~~iEl~ 121 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSS------------TKIKIIRGPMEM--NHYS-E------GYYTIDFYDPNGFIIEVA 121 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHH------------CCCEEecCCccc--CCCC-C------CEEEEEEECCCCCEEEEE
Confidence 556667777666667666665533 233333322110 0111 1 235788999999988765
Q ss_pred ec
Q psy15453 196 LN 197 (247)
Q Consensus 196 ~~ 197 (247)
..
T Consensus 122 ~~ 123 (128)
T PRK06724 122 YT 123 (128)
T ss_pred eC
Confidence 33
No 306
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=20.21 E-value=1.3e+02 Score=15.23 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=10.0
Q ss_pred CchhhHHHHHHHHHHh
Q psy15453 1 MLKYGLSLAVILLYMS 16 (247)
Q Consensus 1 m~k~~l~l~~~ll~~~ 16 (247)
|+|+.+..+....++.
T Consensus 1 MKklaiMaa~s~~~~v 16 (21)
T PF12393_consen 1 MKKLAIMAAASMMTAV 16 (21)
T ss_pred CchHHHHHHHHHHHHh
Confidence 7777776665555543
No 307
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.18 E-value=3.1e+02 Score=19.07 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=15.6
Q ss_pred CcEEEEEeCCChHhHHHHHHHhh
Q psy15453 116 GAEVVGVSVDSHFTHRAWINSLK 138 (247)
Q Consensus 116 ~~~vl~Vs~d~~~~~~~~~~~~~ 138 (247)
|..-+++.+++.++..++.+...
T Consensus 70 g~~hi~f~v~~~~~v~~~~~~l~ 92 (125)
T cd07241 70 GWAHLAFSVGSKEAVDELTERLR 92 (125)
T ss_pred ceEEEEEECCCHHHHHHHHHHHH
Confidence 56667888877666666666554
No 308
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=20.16 E-value=3.2e+02 Score=19.24 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=35.2
Q ss_pred CeEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCcEEEEEeCC
Q psy15453 83 KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVD 125 (247)
Q Consensus 83 k~vvl~F~~a~~Cp~C~~~~~~l~~l~~~~~~~~~~vl~Vs~d 125 (247)
.++.|.+-|..-|+.-..-.-+|+-++..+++.|.+++-.-.+
T Consensus 5 a~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~ 47 (88)
T PF15092_consen 5 AYVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIE 47 (88)
T ss_pred cEEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEec
Confidence 4677888888889887777889999999999889888877554
Done!