RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15453
(247 letters)
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 340 bits (874), Expect = e-120
Identities = 117/219 (53%), Positives = 145/219 (66%), Gaps = 7/219 (3%)
Query: 27 GSCSHTEMCSFTDSPTKFDHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLV 86
GS H S P + H V + APY+KGTAVV G KEI L D++GKYLV
Sbjct: 2 GSSHHHHHHSSGLVP-RGSHMLEDPAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLV 60
Query: 87 FFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKD 146
FFYPLDFTFVCPTE++A ++K EFH + EVV VSVDSHF+H AWIN+ +K+ L
Sbjct: 61 LFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGH- 119
Query: 147 NRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206
+ I LLSDLT +ISRDYGV LE G +LRGLFIID G+++ +++NDLPVGRSVE
Sbjct: 120 -----MNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVE 174
Query: 207 ETLRLVRAFQYTDEHGEACPSGWQPGQRTISNREEDEKE 245
ETLRLV+AFQ+ + HGE P+ W P TI +E
Sbjct: 175 ETLRLVKAFQFVEAHGEVSPANWTPESPTIKPHPTASRE 213
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 337 bits (867), Expect = e-118
Identities = 129/201 (64%), Positives = 157/201 (78%), Gaps = 6/201 (2%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAPYW+GTAV+DG KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 54 DHSLHLSKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIA 113
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++++EF I EVV SVDS FTH AWIN+ ++ L ++IPLLSDLTH+I
Sbjct: 114 FGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGP------IRIPLLSDLTHQI 167
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 168 SKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEV 227
Query: 225 CPSGWQPGQRTISNREEDEKE 245
P+GW+PG TI + +
Sbjct: 228 APAGWKPGSETIIPDPAGKLK 248
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 334 bits (858), Expect = e-118
Identities = 118/194 (60%), Positives = 149/194 (76%), Gaps = 6/194 (3%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
NA + KPAP +K TAVVDG KE+KL+DY+GKY+V FFYPLDFTFV PTE++A + + ++
Sbjct: 4 NARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAED 63
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F K+G EV+GVSVDS FTH AWIN+ +K+ L L IPLL+D+T +S DYGV
Sbjct: 64 FRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGP------LNIPLLADVTRRLSEDYGVL 117
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQP 231
D+G + RGLFIID +G++RQIT+NDLPVGRSV+E LRLV+AFQYTDEHGE CP+GW+P
Sbjct: 118 KTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEHGEVCPAGWKP 177
Query: 232 GQRTISNREEDEKE 245
G TI +D KE
Sbjct: 178 GSDTIKPNVDDSKE 191
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 335 bits (861), Expect = e-118
Identities = 126/201 (62%), Positives = 157/201 (78%), Gaps = 6/201 (2%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
DH + A + KPAP W+GTAV++G KE+KL+DYRGKYLVFFFYPLDFTFVCPTE++A
Sbjct: 40 DHSLHLSKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIA 99
Query: 105 LNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI 164
++++ EF I EVV SVDS FTH AWI + +K L +KIPLLSDLTH+I
Sbjct: 100 FSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGP------MKIPLLSDLTHQI 153
Query: 165 SRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEA 224
S+DYGVYLED+GH+LRGLFIID +G++RQIT+NDLPVGRSV+ETLRLV+AFQYTD+HGE
Sbjct: 154 SKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKHGEV 213
Query: 225 CPSGWQPGQRTISNREEDEKE 245
CP+GW+PG TI + +
Sbjct: 214 CPAGWKPGSDTIIPDPSGKLK 234
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 330 bits (849), Expect = e-116
Identities = 126/193 (65%), Positives = 152/193 (78%), Gaps = 6/193 (3%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
PAPYW+GTAV+DG KE+KLTDYRGKYLVFFFYPLDFTFVCPTE++A ++++EF
Sbjct: 19 YFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEF 78
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
I EVV SVDS FTH AWIN+ ++ L ++IPLLSDLTH+IS+DYGVYL
Sbjct: 79 RSINTEVVACSVDSQFTHLAWINTPRRQGGLGP------IRIPLLSDLTHQISKDYGVYL 132
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232
ED GH+LRGLFIID +GI+RQITLNDLPVGRSV+ETLRLV+AFQYTD+HGE CP+GW+PG
Sbjct: 133 EDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPG 192
Query: 233 QRTISNREEDEKE 245
TI + +
Sbjct: 193 SETIIPDPAGKLK 205
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 329 bits (846), Expect = e-116
Identities = 99/198 (50%), Positives = 136/198 (68%), Gaps = 9/198 (4%)
Query: 42 TKFDHREGWTN---AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVC 98
D ++ W + + +PAP +KG AV++G KEI L DYRGKY+V FFYP DFTFVC
Sbjct: 26 YDDDDKDRWGSTMVLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVC 85
Query: 99 PTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS 158
PTE++A +++++EF+ +V+ S DS ++H AW N +K L +KIPLL+
Sbjct: 86 PTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGH------MKIPLLA 139
Query: 159 DLTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYT 218
D EIS+ YGV+ E+ G++ RGLFIID GI+RQIT+ND PVGRSV+ETLRL+ AFQ+
Sbjct: 140 DRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFV 199
Query: 219 DEHGEACPSGWQPGQRTI 236
++HGE CP W+ GQ I
Sbjct: 200 EKHGEVCPVNWKRGQHGI 217
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 327 bits (841), Expect = e-115
Identities = 89/186 (47%), Positives = 129/186 (69%), Gaps = 7/186 (3%)
Query: 52 NAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKID 110
A + PAP + TA++ +G K++ LT Y+GK+LV FFYP+DFTFVCPTE+ ++++
Sbjct: 5 EAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVK 64
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
EF IG EV+ S+DS ++H AW + +K L + + IP+L+D T I + YGV
Sbjct: 65 EFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQ------MNIPILADKTKCIMKSYGV 118
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQ 230
E+ G + RGLFIID + +RQIT+NDLPVGR V+E LRLV+AFQ+ ++HGE CP+ W+
Sbjct: 119 LKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQFVEKHGEVCPANWK 178
Query: 231 PGQRTI 236
PG +T+
Sbjct: 179 PGDKTM 184
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 327 bits (840), Expect = e-115
Identities = 95/195 (48%), Positives = 127/195 (65%), Gaps = 6/195 (3%)
Query: 42 TKFDHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTE 101
+ R A V K AP +K TAVVDG E+ L Y+GKY+V F PL FTFV PTE
Sbjct: 12 SGLVPRGSHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTE 71
Query: 102 VLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT 161
++A +E +F + GA+V+ S DS ++ AW N +K+ L + IPLL+D
Sbjct: 72 IIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGP------INIPLLADTN 125
Query: 162 HEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH 221
H +SRDYGV +E++G +LRGLFIID +G++R IT+NDLPVGR+V+E LRLV AFQ+TD++
Sbjct: 126 HSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKN 185
Query: 222 GEACPSGWQPGQRTI 236
G P W PG TI
Sbjct: 186 GTVLPCNWTPGAATI 200
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 324 bits (834), Expect = e-114
Identities = 81/186 (43%), Positives = 118/186 (63%), Gaps = 7/186 (3%)
Query: 52 NAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKID 110
A + PAP + A++ +G K++ L+ Y+GKY+V FFYP+DFTFVCPTE++ ++
Sbjct: 5 AAKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAK 64
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
F +I EV+ S DS ++H W + +K L + IP+L+D T I+R YGV
Sbjct: 65 RFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGP------MAIPMLADKTKAIARAYGV 118
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQ 230
ED G + RG+FIID G +RQI +ND+P+GR+VEE +RLV A Q+ +EHGE CP+ W+
Sbjct: 119 LDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQFVEEHGEVCPANWK 178
Query: 231 PGQRTI 236
G
Sbjct: 179 KGDAKK 184
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 317 bits (814), Expect = e-111
Identities = 63/185 (34%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
+++ +K A +G E+ D G++ VFFFYP DFTFV PTE+ + + +E
Sbjct: 1 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEEL 60
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
K+G +V VS D+HFTH+AW +S + + K+K ++ D T ++R++
Sbjct: 61 QKLGVDVYSVSTDTHFTHKAWHSSSET---------IAKIKYAMIGDPTGALTRNFDNMR 111
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH-GEACPSGWQP 231
ED+G + R F++D +GI++ I + +GR + LR ++A QY H GE CP+ W+
Sbjct: 112 EDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKE 171
Query: 232 GQRTI 236
G+ T+
Sbjct: 172 GEATL 176
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 313 bits (805), Expect = e-109
Identities = 78/197 (39%), Positives = 121/197 (61%), Gaps = 9/197 (4%)
Query: 42 TKFDHREGWTNAVVMKPAPYWKGTAVV-DGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCP 99
+ V K AP++K AV D + E+ LT + GK Y++ +FYPLDFTFVCP
Sbjct: 10 HSSGLVPRGSPTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCP 69
Query: 100 TEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159
+E++AL++ +D FH+ E++G SVDS +TH AW + + +K LLSD
Sbjct: 70 SEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGN------IKHTLLSD 123
Query: 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
+T IS+DY V +D SLR +ID GIV+ + +N+L +GRSV+E LR++ A Q+ +
Sbjct: 124 ITKSISKDYNVLFDD-SVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQHHE 182
Query: 220 EHGEACPSGWQPGQRTI 236
++G+ CP+ WQ G+ ++
Sbjct: 183 KYGDVCPANWQKGKVSM 199
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 311 bits (800), Expect = e-109
Identities = 71/184 (38%), Positives = 116/184 (63%), Gaps = 9/184 (4%)
Query: 55 VMKPAPYWKGTAVV-DGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEF 112
AP +K AV D E+ L+D+ GK Y++ +FYPLDFTFVCP+E++AL++ +D F
Sbjct: 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
+ E++G SVDS FTH AW + + +K L+SD++ I+R Y V
Sbjct: 62 KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGN------IKHTLISDISKSIARSYDVLF 115
Query: 173 EDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPG 232
+ +LR +ID++G+V+ + +N+L +GRSV+E LRL+ A Q+ +++G+ CP+ WQ G
Sbjct: 116 NE-SVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQHHEKYGDVCPANWQKG 174
Query: 233 QRTI 236
+ ++
Sbjct: 175 KESM 178
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 311 bits (799), Expect = e-109
Identities = 60/186 (32%), Positives = 98/186 (52%), Gaps = 11/186 (5%)
Query: 53 AVVMKPAPYWKGTAVVDGN-IKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDE 111
+++ ++ A G E+ D +GK+ + FYP DF+FVCPTE+ + ++ E
Sbjct: 1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAE 60
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
K+G EV VS D+HF H+AW + ++ ++ D + ISR + V
Sbjct: 61 LKKLGVEVYSVSTDTHFVHKAWHE---------NSPAVGSIEYIMIGDPSQTISRQFDVL 111
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH-GEACPSGWQ 230
E+ G + RG FIID +G+++ I +N +GR + V+A QY E+ GE CP+ W+
Sbjct: 112 NEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQYVRENPGEVCPAKWE 171
Query: 231 PGQRTI 236
G T+
Sbjct: 172 EGGETL 177
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 311 bits (800), Expect = e-109
Identities = 70/206 (33%), Positives = 113/206 (54%), Gaps = 9/206 (4%)
Query: 42 TKFDHREGWTNAVVMKPAPYWKGTAV-VDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCP 99
+ ++V K A + + + I + L+ + G KY FYPL++TFVCP
Sbjct: 14 SGHIEGRHMKLSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCP 73
Query: 100 TEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD 159
TE++ N+ I +F E++G+SVDS ++H AW N + + ++ L+SD
Sbjct: 74 TEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGN------VEFTLVSD 127
Query: 160 LTHEISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
+ +IS++Y V ++ +LRGLFIID+ G VR T+NDLP+GR+V+E LR + + + D
Sbjct: 128 INKDISKNYNVLYDN-SFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSIIHVD 186
Query: 220 EHGEACPSGWQPGQRTISNREEDEKE 245
GE CP W+ GQ+ E +
Sbjct: 187 TSGEVCPINWKKGQKAFKPTTESLID 212
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 307 bits (788), Expect = e-107
Identities = 76/186 (40%), Positives = 118/186 (63%), Gaps = 10/186 (5%)
Query: 54 VVMKPAPYWKGTAVVDGN--IKEIKLTDYRGKY-LVFFFYPLDFTFVCPTEVLALNEKID 110
VV K AP +K AV+ N + +L+ GK ++ FF+P DFTFVCPTE++A ++++
Sbjct: 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61
Query: 111 EFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGV 170
+FH+ G V+GVS+DS H AW N+ + + + + P+++D+T ISRDY V
Sbjct: 62 DFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQ------VSFPMVADITKSISRDYDV 115
Query: 171 YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQ 230
E+ +LRG F+ID+ VR +NDLP+GR+ +E LR+V A + +EHGE CP+GW+
Sbjct: 116 LFEE-AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEVCPAGWR 174
Query: 231 PGQRTI 236
G + +
Sbjct: 175 KGDKGM 180
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 279 bits (716), Expect = 2e-96
Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 26/203 (12%)
Query: 55 VMKPAPYWKGTAVVDGNI------------KEIKLTDYRGKYLVFFFYPLDFTFVCPTEV 102
+ P ++ TA++ G++ I ++ GK+ V FF+P DFTFVCPTE+
Sbjct: 6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEI 65
Query: 103 LALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH 162
A ++ DEF A+++GVS+DS F H W + N L L P+LSD+
Sbjct: 66 AAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRA---------QHNDLKTLPFPMLSDIKR 116
Query: 163 EISRDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHG 222
E+S+ GV D G + R FI+D ++ ++ VGR+V+E LR++ A Q
Sbjct: 117 ELSQAAGVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ----SD 171
Query: 223 EACPSGWQPGQRTISNREEDEKE 245
E C S W+ G T+ E +
Sbjct: 172 ELCASNWRKGDPTLDAGELLKAS 194
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 245 bits (628), Expect = 1e-82
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 17/199 (8%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115
AP ++ V I+ D+ G + + F +P DFT VC TE+ + EF K
Sbjct: 9 DVAPNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKR 64
Query: 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK 175
+++ +S+DS H AW K N+ + +KL P++ D E++ G+ +
Sbjct: 65 NVKLIALSIDSVEDHLAWS---KDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAE 121
Query: 176 GHS------LRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
R +F+ + ++ L GR+ +E LR+V + Q T E A P W
Sbjct: 122 KDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLTAEKRVATPVDW 181
Query: 230 QPGQRTI---SNREEDEKE 245
+ G + + EE+ K+
Sbjct: 182 KDGDSVMVLPTIPEEEAKK 200
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 244 bits (625), Expect = 3e-82
Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 18/201 (8%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115
P + A + +L Y + + F +P DFT VC TE+ L + ++F K+
Sbjct: 7 ATFPNFTAKASGID--GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKL 64
Query: 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK 175
+++G S +S +H WI +K L+K +IP++ D + E++ + E +
Sbjct: 65 NCKLIGFSCNSKESHDKWIEDIKYYGK------LNKWEIPIVCDESRELANKLKIMDEQE 118
Query: 176 GHS------LRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
R LF I E ++ L GR+ E LR++++ Q T A P W
Sbjct: 119 KDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQLTYTTPVATPVNW 178
Query: 230 QPGQRTI---SNREEDEKEEL 247
G + + ++++ +
Sbjct: 179 NEGDKCCVIPTLQDDEISKHF 199
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 243 bits (623), Expect = 1e-81
Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 19/199 (9%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFFYPLDFTFVCPTEVLALNEKIDEFHKI 115
+ P ++ + + ++K D+ G + V F +P DFT V TE+ + + +F K
Sbjct: 7 EVFPNFEADSTI----GKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKR 62
Query: 116 GAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK 175
G +++ +S D+ H+ W +K + +K D + P+++D T E++ G+ D+
Sbjct: 63 GVKLIALSCDNVADHKEWSEDVKCLSGVKGD-----MPYPIIADETRELAVKLGMVDPDE 117
Query: 176 GHS------LRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGW 229
S R +FII + ++ L GR+ E LR++ + Q T + A P+ W
Sbjct: 118 RTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSLQLTAQKKVATPADW 177
Query: 230 QPGQRTI---SNREEDEKE 245
QPG R + E+ K
Sbjct: 178 QPGDRCMVVPGVSAEEAKT 196
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 241 bits (616), Expect = 2e-80
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 16/197 (8%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIG 116
+ P + T G IK +GK+ V F +P DFT VC TE ++ + ++F ++G
Sbjct: 9 ERFPEMEVTTDH-GVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG 67
Query: 117 AEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKG 176
+++G+SVDS F+H W +++ + ++ P+++D ++R G+ +
Sbjct: 68 VDLIGLSVDSVFSHIKWKEWIERHIGV-------RIPFPIIADPQGTVARRLGLLHAESA 120
Query: 177 -HSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQP---- 231
H++RG+FI+D G++R + + +GR V+E LR+V+A + D A P+ W
Sbjct: 121 THTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALKLGDSLKRAVPADWPNNEII 180
Query: 232 GQRTI---SNREEDEKE 245
G+ I E+ +
Sbjct: 181 GEGLIVPPPTTEDQARA 197
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 204 bits (520), Expect = 4e-67
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 19/165 (11%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRG-KYLVFFFYPLDFTFVCPTEVLALNEKIDEFH 113
V AP + + D N + + L YRG K ++ F+PL FT +C E+ L + + EF
Sbjct: 11 VGATAPDFT---LRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE 67
Query: 114 KIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL--THEISRDYGVY 171
+ + +SV TH+ W PLLSD +S+ YGV+
Sbjct: 68 NDDSAALAISVGPPPTHKIWATQ-------------SGFTFPLLSDFWPHGAVSQAYGVF 114
Query: 172 LEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
E G + RG F++DR GI+R + R + A
Sbjct: 115 NEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT 159
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 135 bits (343), Expect = 1e-40
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 19/152 (12%)
Query: 69 DGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHF 128
D +K++KL+ +GK +V FYP FT VC E+ + + +F+++ A V+G+SVD F
Sbjct: 17 DTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPF 76
Query: 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH-----SLRGLF 183
+++A+ + + L +LSD E+ + Y V E + R +F
Sbjct: 77 SNKAFK---EHNK----------LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVF 123
Query: 184 IIDREGIVRQITLNDLPVGRS-VEETLRLVRA 214
+ID+EG VR ++D P +E ++V++
Sbjct: 124 VIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS 155
Score = 26.8 bits (60), Expect = 4.2
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 25 DTGSCSHTEMCSFTDSPTKFDHREGWTNAVV 55
T C+ EMC+F DS KF+ NAVV
Sbjct: 42 FTQVCT-KEMCTFRDSMAKFNQV----NAVV 67
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 128 bits (325), Expect = 1e-37
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 69 DGNIKEIKLTDY--RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+ + + + L + RG+ V F+P F+ VC E+ +K+ + K AEV+ +SVDS
Sbjct: 18 NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS 77
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGH----SLRGL 182
+ + + ++ L LLSD E+ + Y VY ED + R +
Sbjct: 78 PWCLKKFK---DENR----------LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAV 124
Query: 183 FIIDREGIVRQITLNDLPVGRS-VEETLRLVRAFQ 216
FI+ +G V + D P+ +E +R
Sbjct: 125 FIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA 159
Score = 27.2 bits (61), Expect = 4.1
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 25 DTGSCSHTEMCSFTDSPTKFDHREGWTNAVV 55
+ C+ E+C+F D + + NA V
Sbjct: 45 FSPVCT-KELCTFRDKMAQLEKA----NAEV 70
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 115 bits (289), Expect = 2e-32
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+ ++ + L D+ GK V P T +C T+ NE++ V+ VS+D
Sbjct: 27 LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDL 84
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLEDKGHSLRGLFII 185
F + W + DN +LSD H RDY + + + R +F++
Sbjct: 85 PFAQKRWCGAEGLDN------------AIMLSDYFDHSFGRDYALLINEWHLLARAVFVL 132
Query: 186 DREGIVR 192
D + +R
Sbjct: 133 DTDNTIR 139
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 111 bits (279), Expect = 7e-31
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 16/127 (12%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
V+D ++ ++ L DY GK + P T VC + N + K V+ +S D
Sbjct: 31 VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFN---SDASKEEGIVLTISADL 87
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH-EISRDYGVYLEDKGHSLRGLFII 185
F + W S DN + LSD +YGV +E+ R +F++
Sbjct: 88 PFAQKRWCASAGLDN------------VITLSDHRDLSFGENYGVVMEELRLLARAVFVL 135
Query: 186 DREGIVR 192
D + V
Sbjct: 136 DADNKVV 142
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 110 bits (278), Expect = 1e-30
Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
VV +++E + + V P T VC TE NE + G +V VS+D
Sbjct: 32 VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVDVTVVSMDL 89
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED---KGHSLRGLF 183
F + + S N + + SD + YGV + + KG R +F
Sbjct: 90 PFAQKRFCESFNIQN------------VTVASDFRYRDMEKYGVLIGEGALKGILARAVF 137
Query: 184 IIDREGIVR 192
IID+EG V
Sbjct: 138 IIDKEGKVA 146
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 105 bits (263), Expect = 2e-28
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+ G++ I +RGK ++ +P T VC T V +E+ GA V+ VS D
Sbjct: 29 LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS---GATVLCVSKDL 85
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED---KGHSLRGLF 183
F + + + +N + S DYGV + D G R +
Sbjct: 86 PFAQKRFCGAEGTEN------------VMPASAFRDSFGEDYGVTIADGPMAGLLARAIV 133
Query: 184 IIDREGIVR 192
+I +G V
Sbjct: 134 VIGADGNVA 142
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 104 bits (261), Expect = 3e-28
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 15/127 (11%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
V+ +++E L D +GK + P T VC + NE+ + V +S D
Sbjct: 29 VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVNVYTISADL 86
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLEDKGHSLRGLFII 185
F W + D + LSD +GVY+++ R +F++
Sbjct: 87 PFAQARWCGANGIDK------------VETLSDHRDMSFGEAFGVYIKELRLLARSVFVL 134
Query: 186 DREGIVR 192
D G V
Sbjct: 135 DENGKVV 141
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 103 bits (258), Expect = 2e-27
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 18/130 (13%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+V ++ ++ L+ + GK V +P T VC V N+ E V+ +S D
Sbjct: 63 LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCISSDL 120
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLED---KGHSLRGL 182
F + + N + LS L + + YGV + + G + R +
Sbjct: 121 PFAQSRFCGAEGLSN------------VITLSTLRGADFKQAYGVAITEGPLAGLTARAV 168
Query: 183 FIIDREGIVR 192
++D + V
Sbjct: 169 VVLDGQDNVI 178
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 102 bits (255), Expect = 3e-27
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 18/130 (13%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+V ++ ++ L D+ K V +P T VC T V N++ + V+ +S D
Sbjct: 28 LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADL 85
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLED---KGHSLRGL 182
F + + +N +S H + GV ++ G + R +
Sbjct: 86 PFAQARFCGAEGIEN------------AKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAV 133
Query: 183 FIIDREGIVR 192
++D + V
Sbjct: 134 IVLDEQNNVL 143
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 100 bits (251), Expect = 1e-26
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 69 DGNIKEIKLTDYRGKY-LVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSH 127
N ++I L+DY GK+ +V +FYP D T E A + D V+GVS D
Sbjct: 15 ADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDI 74
Query: 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDR 187
+H+ + +K L L+SD +I YG R F+ID+
Sbjct: 75 NSHKRFK---EKYK----------LPFILVSDPDKKIRELYGAK-GFIL-PARITFVIDK 119
Query: 188 EGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
+GI+R I + + V E L+ ++ +
Sbjct: 120 KGIIRHIYNSQMNPANHVNEALKALKQIK 148
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 93.9 bits (234), Expect = 3e-24
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 19/128 (14%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132
+ L + G +LV +FYP D T TE L N + EF K GA+++GVS DS +H
Sbjct: 26 TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDN 85
Query: 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GHSLRGL----FIID 186
+ K+ PL+SD + R + V E G + G+ F++
Sbjct: 86 FCA--KQG-----------FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLS 132
Query: 187 REGIVRQI 194
EG V Q
Sbjct: 133 PEGQVVQA 140
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 93.2 bits (232), Expect = 9e-24
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 19/128 (14%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRA 132
L+DY ++LV +FYP D T TE L N + +F +I A V+GVS DS +H +
Sbjct: 42 TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDS 101
Query: 133 WINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDK--GHSLRGL----FIID 186
+ PL+SD + + + V E G + G+ F+I
Sbjct: 102 FCAKQ-------------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIG 148
Query: 187 REGIVRQI 194
+ +
Sbjct: 149 PTHRIVEA 156
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 93.4 bits (232), Expect = 2e-23
Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 28/186 (15%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDS 126
+VD + L + + +L + +++ ++VDS
Sbjct: 33 LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLKLIVITVDS 92
Query: 127 HFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDL-THEISRDYGVYLED---KGHSLRGL 182
+ + N I LLS L + + YGV + + G++ +
Sbjct: 93 PSSLARARHEHGLPN------------IALLSTLRGRDFHKRYGVLITEYPLSGYTSPAI 140
Query: 183 FIIDREGIVR--QIT--LNDLPVGRSVEETLRLVRAFQYTDEHGEACPSGWQPGQRTISN 238
+ D +V + D ++E+ L+ +A + + +
Sbjct: 141 ILADAANVVHYSERLANTRDFFDFDAIEKLLQEGEQ--------QAMAAEREAAEARQEQ 192
Query: 239 REEDEK 244
E EK
Sbjct: 193 DAEREK 198
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 73.5 bits (181), Expect = 1e-16
Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 20/149 (13%)
Query: 73 KEIKLTDY--RGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTH 130
I L + +VFF YP T + + E + A V G+S DS +
Sbjct: 24 DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAA-VFGLSADSVTSQ 82
Query: 131 RAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGLFIIDREGI 190
+ + + K N L LLSD E G S+R FI +G
Sbjct: 83 KKFQS---KQN----------LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFV-DGK 128
Query: 191 VRQITLNDLP---VGRSVEETLRLVRAFQ 216
++ + P V + +E L + F+
Sbjct: 129 LKFKRVKISPEVSVNDAKKEVLEVAEKFK 157
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 68.5 bits (168), Expect = 9e-15
Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 33/172 (19%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFV----CPTEVLALNEKIDEF 112
AP G + G + L D++GKY++ +DF F C E L + + F
Sbjct: 7 SVAPAITGIDL-KG--NSVSLNDFKGKYVL-----VDFWFAGCSWCRKETPYLLKTYNAF 58
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
G + GVS D W ++++D ++ L D ++ Y +
Sbjct: 59 KDKGFTIYGVSTDR--REEDWKKAIEEDK-------SYWNQVLLQKDDVKDVLESYCI-- 107
Query: 173 EDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQYTDEH 221
G ++D EG + L + +VE+ + + + H
Sbjct: 108 -------VGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAKEGHHHHHH 152
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 63.4 bits (155), Expect = 6e-13
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 40/163 (24%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
AP + G +KL+D G + LDF ++ C +N+ +
Sbjct: 7 DKAPDFALPGK-TG---VVKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQAK 56
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
+ G +VV V++D+ + L + + + D + R YGV
Sbjct: 57 YKAKGFQVVAVNLDA--KTGDAMKFLAQV----------PAEFTVAFDPKGQTPRLYGV- 103
Query: 172 LEDKGHSLRGL---FIIDREGIVRQITLNDLPV-GRSVEETLR 210
+G+ F+IDR G V + P ++E+ +
Sbjct: 104 --------KGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQIL 138
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 62.7 bits (153), Expect = 1e-12
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 32/146 (21%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF----VCPTEVLALNEKIDEF 112
+ AP + T DG K++ L+ RGK ++ L FT VC E+ + + I
Sbjct: 11 EMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIWLK 62
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
HK A+ + +D + K + PL D +I Y +
Sbjct: 63 HKDNADFALIGIDRDEPLEKVLAFAKS----------TGVTYPLGLDPGADIFAKYALR- 111
Query: 173 EDKGHSLRGL---FIIDREGIVRQIT 195
G+ +IDREG + ++T
Sbjct: 112 ------DAGITRNVLIDREGKIVKLT 131
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 60.4 bits (147), Expect = 9e-12
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 38/146 (26%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
AP + +G K I+L+D +GK + L+F T+ C E + +
Sbjct: 4 SDAPNFVLEDT-NG--KRIELSDLKGKGVF-----LNFWGTW-CEPCKKEFPYMANQYKH 54
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F G E+V V+V + A N +K + P++ D ++ Y V
Sbjct: 55 FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----------VNFPVVLDTDRQVLDAYDV- 101
Query: 172 LEDKGHSLRGL---FIIDREGIVRQI 194
L F+I+ EG V ++
Sbjct: 102 --------SPLPTTFLINPEGKVVKV 119
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 59.2 bits (144), Expect = 2e-11
Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 37/152 (24%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNE 107
A + + +G K + L D +GKY+ +D T+ C E+ AL E
Sbjct: 4 RSGNPSAASFSYPDI-NG--KTVSLADLKGKYIY-----IDVWATW-CGPCRGELPALKE 54
Query: 108 KIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRD 167
+++ V +S D +AW N + KD I L
Sbjct: 55 LEEKYAGKDIHFVSLSCDK--NKKAWENMVTKDQ---------LKGIQLHMGTDRTFMDA 103
Query: 168 YGVYLEDKGHSLRGL---FIIDREGIVRQITL 196
Y + G+ ++DR+G + +
Sbjct: 104 YLI---------NGIPRFILLDRDGKIISANM 126
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 58.1 bits (141), Expect = 6e-11
Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 37/150 (24%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNE 107
++ K AP + + G K + D +GK + ++F CP E+ + +
Sbjct: 2 SLDSKTAPAFSLPDL-HG--KTVSNADLQGKVTL-----INFWFPS-CPGCVSEMPKIIK 52
Query: 108 KIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRD 167
+++ +V+ V+ + +K L ++ D + +
Sbjct: 53 TANDYKNKNFQVLAVAQP-IDPIESVRQYVKDYG----------LPFTVMYDADKAVGQA 101
Query: 168 YGVYLEDKGHSLRGL---FIIDREGIVRQI 194
+G + +I ++G + +
Sbjct: 102 FGT---------QVYPTSVLIGKKGEILKT 122
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 58.1 bits (141), Expect = 6e-11
Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 33/165 (20%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDE 111
K AP T G L D + KY + FF+ C E L + +
Sbjct: 9 KKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDWWLK 59
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTH--EISRDYG 169
G +V +++ W+ ++ + D + + Y
Sbjct: 60 NRAKGIQVYAANIER--KDEEWLKFIRSKK---------IGGWLNVRDSKNHTDFKITYD 108
Query: 170 VYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214
+Y + L+++D+ ++ + + + + + ++
Sbjct: 109 IY------ATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKT 147
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 57.8 bits (140), Expect = 8e-11
Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 39/161 (24%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTF----VCPTEVLALNEKIDEF 112
+ + G LTD +GK ++ +DFT + LAL E +++
Sbjct: 13 ASIIDIQLKDL-KG--NTRSLTDLKGKVVL-----IDFTVYNNAMSAAHNLALRELYNKY 64
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDYG 169
G E+ +S+D W S D L + D Y
Sbjct: 65 ASQGFEIYQISLDG--DEHFWKTS------------ADNLPWVCVRDANGAYSSYISLYN 110
Query: 170 VYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLR 210
V +L +F+++R + N + ++E ++
Sbjct: 111 V------TNLPSVFLVNRNNELSARGEN----IKDLDEAIK 141
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 57.0 bits (138), Expect = 2e-10
Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 41/146 (28%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
AP + + + L YRGK ++ ++F ++ CP E+ +++ +
Sbjct: 19 ALAP---NFKLPTLSGENKSLAQYRGKIVL-----VNFWASW-CPYCRDEMPSMDRLVKS 69
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
F K V+ V+V+ + + ++ + LSD T ++ + YG
Sbjct: 70 FPKGDLVVLAVNVE-----KRFPEKYRRAP----------VSFNFLSDATGQVQQRYGA- 113
Query: 172 LEDKGHSLRGL---FIIDREGIVRQI 194
L FI+DR+GI+RQ
Sbjct: 114 --------NRLPDTFIVDRKGIIRQR 131
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 55.2 bits (133), Expect = 8e-10
Identities = 25/176 (14%), Positives = 53/176 (30%), Gaps = 40/176 (22%)
Query: 55 VMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKI 109
V++ + T + DG + I L + G ++ L F + CP L+
Sbjct: 13 VLEREASFSLTTI-DG--EVISLNNVGGDVVI-----LWFMAAW-CPSCVYMADLLDRLT 63
Query: 110 DEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLD--------KLKIPLLSDLT 161
+++ +I V+ + + L K D ++
Sbjct: 64 EKYREI--SVIAIDFWT--AEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDD 119
Query: 162 HEISRDYGVYLEDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214
+ + V R + I+D+ V P +E ++ V+
Sbjct: 120 GSLVEKFNV---------RSIDYIVIMDKSSNVLYAGTT--PSLGELESVIKSVQG 164
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 54.7 bits (132), Expect = 8e-10
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 33/149 (22%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFT----FVCPTEVLALNEKIDEF 112
AP + D + G+Y + L+F + L ++++F
Sbjct: 11 DLAPRIEFLGN-DAKAS---FHNQLGRYTL-----LNFWAAYDAESRARNVQLANEVNKF 61
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYL 172
+ +S+D ++K D + E+ + Y +
Sbjct: 62 GPDKIAMCSISMDE--------KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL-- 111
Query: 173 EDKGHSLRGL---FIIDREGIVRQITLND 198
R F+I+ EG++ +
Sbjct: 112 -------RKGFKNFLINDEGVIIAANVTP 133
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 55.0 bits (133), Expect = 8e-10
Identities = 32/180 (17%), Positives = 64/180 (35%), Gaps = 46/180 (25%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNEKIDE 111
PAP + N + +KL+D +G+ ++ ++F T+ CP E+ ++
Sbjct: 6 NPAP---DFTLNTLNGEVVKLSDLKGQVVI-----VNFWATW-CPPCREEIPSMMRLNAA 56
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI--PLLSDLTHEISRDYG 169
++ VS+D + + + K P+L D + + YG
Sbjct: 57 MAGKPFRMLCVSID-------------EGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG 103
Query: 170 VYLEDKGHSLRGL---FIIDREGIVRQ-----ITLNDLPVGRSVEETLRLVRAFQYTDEH 221
G+ F+IDR G++ + + + V + L R + H
Sbjct: 104 T---------TGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAREGHHHHHH 154
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 53.9 bits (130), Expect = 2e-09
Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 42/165 (25%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFT----FVCPTEVLALNEKIDEF 112
K APY+ G +R +YL+ L+F P L E+
Sbjct: 9 KSAPYFSLPNE-KGEKLSRSAERFRNRYLL-----LNFWASWCDPQPEANAELKRLNKEY 62
Query: 113 HK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HEISRDY 168
K ++G+S+D AW ++KKD L + D T E ++ Y
Sbjct: 63 KKNKNFAMLGISLDI--DREAWETAIKKDT----------LSWDQVCDFTGLSSETAKQY 110
Query: 169 GVYLEDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLR 210
+ L ++ G + + G ++ L+
Sbjct: 111 AI---------LTLPTNILLSPTGKILARDIQ----GEALTGKLK 142
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 53.0 bits (128), Expect = 3e-09
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 30/130 (23%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDEFHKIGAEVVGVSVDSH 127
K +L+DY+GK + L F ++ C + +E E + VS
Sbjct: 13 KTYRLSDYKGKKVY-----LKFWASW-CSICLASLPDTDEIAKEAGDDYVVLTVVSPGH- 65
Query: 128 FTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGL---FI 184
K LD +P+L D + ++ YGV R
Sbjct: 66 -KGEQSEADFK-----NWYKGLDYKNLPVLVDPSGKLLETYGV---------RSYPTQAF 110
Query: 185 IDREGIVRQI 194
ID+EG + +
Sbjct: 111 IDKEGKLVKT 120
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 51.6 bits (124), Expect = 1e-08
Identities = 18/154 (11%), Positives = 50/154 (32%), Gaps = 34/154 (22%)
Query: 69 DGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDEFHKIGAEVVGVS 123
D L + + ++ T+ C E+ A+++ K ++VG++
Sbjct: 13 DN--TPQSLQSLKAPVRI-----VNLWATW-CGPCRKEMPAMSKWYKAQKKGSVDMVGIA 64
Query: 124 VDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGL- 182
+D+ ++ + P+ Y G+++ L
Sbjct: 65 LDTSDNIGNFLKQT-------------PVSYPIWRYTGANSRNFMKTY----GNTVGVLP 107
Query: 183 --FIIDREGIVRQITLNDLPVGRSVEETLRLVRA 214
+ + RQ ++ +S+ + ++L +
Sbjct: 108 FTVVEAPKCGYRQTITGEVN-EKSLTDAVKLAHS 140
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 51.3 bits (123), Expect = 2e-08
Identities = 19/150 (12%), Positives = 49/150 (32%), Gaps = 32/150 (21%)
Query: 53 AVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNE 107
P + + + + + K + + F ++ CP E+ +
Sbjct: 12 GTATVPHTMS---TMKTADNRPASVYLKKDKPTL-----IKFWASW-CPLCLSELGQAEK 62
Query: 108 KIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRD 167
+ A ++ V+ + K K L+ K+P+++D I+++
Sbjct: 63 WAQDAKFSSANLITVASPGFLHEK------KDGEFQKWYAGLNYPKLPVVTDNGGTIAQN 116
Query: 168 YGVYLEDKGHSLRGL---FIIDREGIVRQI 194
+ +I ++G V++I
Sbjct: 117 LNI---------SVYPSWALIGKDGDVQRI 137
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 50.8 bits (122), Expect = 2e-08
Identities = 23/165 (13%), Positives = 40/165 (24%), Gaps = 49/165 (29%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT------EVLALNEK 108
+ T + G +GK V L F + CP + +
Sbjct: 2 DERLQFTATTL-SG--APFDGASLQGKPAV-----LWFWTPW-CPFCNAEAPSLSQVAAA 52
Query: 109 IDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDY 168
VG++ + A + + K N L L+D I Y
Sbjct: 53 NPAV-----TFVGIATRA--DVGAMQSFVSKYN----------LNFTNLNDADGVIWARY 95
Query: 169 GVYLEDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLR 210
V +G + + P ++ L
Sbjct: 96 NV---------PWQPAFVFYRADGTSTFV---NNPTAAMSQDELS 128
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 50.4 bits (121), Expect = 2e-08
Identities = 24/136 (17%), Positives = 36/136 (26%), Gaps = 38/136 (27%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNEKIDEFHKIGAEVVGV 122
+DG + GK V L F + CPT E + + EV V
Sbjct: 13 LDG--HDFHGESLLGKPAV-----LWFWAPW-CPTCQGE----APVVGQVAASHPEVTFV 60
Query: 123 SVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGL 182
V A + K L+D + ++GV
Sbjct: 61 GVAGLDQVPAMQEFVNKYP---------VKTFTQLADTDGSVWANFGVT---------QQ 102
Query: 183 ---FIIDREGIVRQIT 195
+D G V +
Sbjct: 103 PAYAFVDPHGNVDVVR 118
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 50.8 bits (122), Expect = 3e-08
Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 40/153 (26%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTD--YRGKYLVFFFYPLDF--TFVCP-----TEVLALNE 107
K AP++ G ++I + ++ K L+ ++F ++ L E
Sbjct: 9 KYAPFFSLPNA-KG--EKITRSSDAFKQKSLL-----INFWASW-NDSISQKQSNSELRE 59
Query: 108 KIDEFHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT---HE 163
++ K ++G+S+D + W +++K+D L + D E
Sbjct: 60 IYKKYKKNKYIGMLGISLDV--DKQQWKDAIKRDT----------LDWEQVCDFGGLNSE 107
Query: 164 ISRDYGVYLEDKGHSLRGLFIIDREGIVRQITL 196
+++ Y + + + ++ +G + L
Sbjct: 108 VAKQYSI------YKIPANILLSSDGKILAKNL 134
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 50.5 bits (121), Expect = 5e-08
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 38/147 (25%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
P A D + K KL+D+RGK L+ ++ T+ C E+ AL+E +
Sbjct: 38 LKLP---DLAFEDADGKPKKLSDFRGKTLL-----VNLWATW-CVPCRKEMPALDELQGK 88
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI---PLLSDLTHEISRDY 168
EVV +++D + K L + + +D ++ +D
Sbjct: 89 LSGPNFEVVAINID-------------TRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDL 135
Query: 169 GVYLEDKGHSLRGL---FIIDREGIVR 192
G+ ++D +G
Sbjct: 136 KAIGR-----ALGMPTSVLVDPQGCEI 157
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 49.4 bits (118), Expect = 8e-08
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 38/158 (24%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCP---TEVL-ALNE 107
+++ P V+ + + D RGK +V F +CP + +
Sbjct: 2 SSLDNAPLLELDVQEWVNH--EGLSNEDLRGKVVVVEV----FQMLCPGCVNHGVPQAQK 55
Query: 108 KIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI--PLLSDLTHE-- 163
+ +V+G+ +LK +D+ I P+ D+ E
Sbjct: 56 IHRMIDESQVQVIGLHSVFEHHDVMTPEALKVF--------IDEFGIKFPVAVDMPREGQ 107
Query: 164 ----ISRDYGVYLEDKGHSLRGL---FIIDREGIVRQI 194
+ Y + G + DR+G +RQ+
Sbjct: 108 RIPSTMKKYRL---------EGTPSIILADRKGRIRQV 136
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 48.9 bits (117), Expect = 9e-08
Identities = 13/147 (8%), Positives = 35/147 (23%), Gaps = 38/147 (25%)
Query: 73 KEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKI---DEFHKIGAEVVGVSV 124
+++ + +Y + FFY C E + V+ +
Sbjct: 18 DNSRMSRLKAQYTMLFFYDPDCSN------CRKFEKLFAEIPAFVEMVENGTLRVLAIYP 71
Query: 125 DSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHE--ISRDYGVYLEDKGHSLRGL 182
D W + + + + Y + + +
Sbjct: 72 DE--NREEWATKAVY----------MPQGWIVGWNKAGDIRTRQLYDI------RATPTI 113
Query: 183 FIIDREGIVRQITLNDLPVGRSVEETL 209
+++D V + + + L
Sbjct: 114 YLLDGRKRVILKDTS----MEQLIDYL 136
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 51.1 bits (122), Expect = 9e-08
Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 28/129 (21%)
Query: 73 KEIKLTDYRGKYLVFFFYPLDF-TFVCPT---EVLALNEKIDEFHKIGAEVVGVSVDSHF 128
K I L RGK ++ +DF + C + + + G V+GV +
Sbjct: 73 KPIDLKSLRGKVVL-----IDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPE-Y 126
Query: 129 THRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLEDKGHSLRGL---FII 185
++ K + P+ D + +Y R ++I
Sbjct: 127 AFEKVPGNVAK--GAANLG----ISYPIALDNNYATWTNYRN---------RYWPAEYLI 171
Query: 186 DREGIVRQI 194
D G VR I
Sbjct: 172 DATGTVRHI 180
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 49.3 bits (118), Expect = 1e-07
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 48/167 (28%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNEKIDE 111
PAP + G V DG K +GK + ++F T+ CP E+ + +
Sbjct: 12 TPAPSFSGVTV-DG--KPFSSASLKGKAYI-----VNFFATW-CPPCRSEIPDMVQVQKT 62
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSD-----LTHEISR 166
+ G VG++V+ N +K + P++
Sbjct: 63 WASRGFTFVGIAVNE--QLPNVKNYMKTQG----------IIYPVMMATPELIRAFNGYI 110
Query: 167 DYGVYLEDKGHSLRGL---FIIDREGIVRQITLNDLPVGRSVEETLR 210
D G+ G+ F+ID G V + VG +
Sbjct: 111 DGGI---------TGIPTSFVIDASGNVSGVI-----VGPRSKADFD 143
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 49.0 bits (117), Expect = 1e-07
Identities = 28/152 (18%), Positives = 46/152 (30%), Gaps = 36/152 (23%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCP---TEVL-ALNEKIDEF 112
AP + + ++ L D RGK +V F +CP + + F
Sbjct: 4 MKAPELQIQQWFNSA-TDLTLADLRGKVIVIEA----FQMLCPGCVMHGIPLAQKVRAAF 58
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI--PLLSD-----LTHEIS 165
+ V+G+ SLK L + +I P+ D
Sbjct: 59 PEDKVAVLGLHTVFEHHEAMTPISLK--------AFLHEYRIKFPVGVDQPGDGAMPRTM 110
Query: 166 RDYGVYLEDKGHSLRGL---FIIDREGIVRQI 194
Y + RG +ID+ G +R
Sbjct: 111 AAYQM---------RGTPSLLLIDKAGDLRAH 133
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 48.5 bits (116), Expect = 2e-07
Identities = 21/146 (14%), Positives = 55/146 (37%), Gaps = 36/146 (24%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCPT---EVLALNEKIDE 111
+ + +G ++I + + +G+ + L F ++ CP E+ D
Sbjct: 13 AVPAVFLMKTI-EG--EDISIPN-KGQKTI-----LHFWTSW-CPPCKKELPQFQSFYDA 62
Query: 112 FHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVY 171
++V V++ + ++ + K N KL P++ D E+ ++Y +
Sbjct: 63 HPSDSVKLVTVNLVNSEQNQQVVEDFIKAN---------KLTFPIVLDSKGELMKEYHI- 112
Query: 172 LEDKGHSLRGL---FIIDREGIVRQI 194
+ F+++ +G + +
Sbjct: 113 --------ITIPTSFLLNEKGEIEKT 130
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 47.7 bits (114), Expect = 3e-07
Identities = 19/155 (12%), Positives = 38/155 (24%), Gaps = 39/155 (25%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKI-- 109
A + T G + L + +Y + F C + L
Sbjct: 9 TKALNFTYTLD-SG--VKGTLYQFPAEYTLLFINNPGCHA------CAEMIEGLKASPVI 59
Query: 110 -DEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEI--SR 166
+V+ + D W + D I
Sbjct: 60 NGFTAAKKLKVLSIYPDE--ELDEWKKHRND----------FAKEWTNGYDKELVIKNKN 107
Query: 167 DYGVYLEDKGHSLRGLFIIDREGIV--RQITLNDL 199
Y + ++ L+++D+ V + TL +
Sbjct: 108 LYDL------RAIPTLYLLDKNKTVLLKDATLQKV 136
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 47.1 bits (112), Expect = 4e-07
Identities = 25/162 (15%), Positives = 48/162 (29%), Gaps = 39/162 (24%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDEFH-KIGAEVV 120
V+ G +I L GK + F+F P L + K EV+
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPP------SRAFTPQLIDFYKAHAEKKNFEVM 66
Query: 121 GVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLT--HEISRDYGVYLEDKGHS 178
+S D + + + K D ++ + V S
Sbjct: 67 LISWDE--SAEDFKDYYAK----------MPWLALPFEDRKGMEFLTTGFDV------KS 108
Query: 179 LRGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
+ L ++ + G + IT R++ + F + +
Sbjct: 109 IPTLVGVEADSGNI--ITTQ----ARTMVVKDPEAKDFPWPN 144
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 47.8 bits (114), Expect = 5e-07
Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 38/154 (24%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDF--TFVCP---TEVLALNEKIDE 111
+ P G ++ +I L+D+ + ++ L+ + C +E L +E
Sbjct: 35 QQLPDIGGDSL-MEEGTQINLSDFENQVVI-----LNAWGQW-CAPCRSESDDLQIIHEE 87
Query: 112 FHKIGA------EVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165
G V+G++V + + + + + L P + D +
Sbjct: 88 LQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDNG----------LDYPSIYDPPFMTA 136
Query: 166 RDYGVYLEDKGHSLRGL---FIIDREGIVRQITL 196
G + ++D++ + L
Sbjct: 137 ASLGGV------PASVIPTTIVLDKQHRPAAVFL 164
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 47.0 bits (112), Expect = 5e-07
Identities = 32/174 (18%), Positives = 54/174 (31%), Gaps = 46/174 (26%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDE 111
K P G + E+++ GK + F+F P L E D+
Sbjct: 6 KYLP---GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP------ARGFTPQLIEFYDK 56
Query: 112 FHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYG 169
FH+ EVV + D + K + L +P S+ ++S+ +
Sbjct: 57 FHESKNFEVVFCTWDE--EEDGFAGYFAK---------MPWLAVPFAQSEAVQKLSKHFN 105
Query: 170 VYLEDKGHSLRG---LFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
V L +D + G V +T R+ F + D
Sbjct: 106 V---------ESIPTLIGVDADSGDV--VTTR----ARATLVKDPEGEQFPWKD 144
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 46.5 bits (111), Expect = 6e-07
Identities = 30/174 (17%), Positives = 50/174 (28%), Gaps = 46/174 (26%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDE 111
K P G + E+ L GK + +F P C L E ++
Sbjct: 6 KYLP---GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP------CRGFTPVLAEFYEK 56
Query: 112 FHK-IGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPL-LSDLTHEISRDYG 169
H EVV +S D + + K + L +P E+ + +G
Sbjct: 57 HHVAKNFEVVLISWDE--NESDFHDYYGK---------MPWLALPFDQRSTVSELGKTFG 105
Query: 170 VYLEDKGHSLRG---LFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQYTD 219
V L I+ + G + I R+ F + +
Sbjct: 106 V---------ESIPTLITINADTGAI--IGTQ----ARTRVIEDPDGANFPWPN 144
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 45.9 bits (109), Expect = 1e-06
Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 36/140 (25%)
Query: 64 GTAVVDGNIKEIKLTDY--RGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDEFHKIG 116
G +V N E+ + + F+F P C L + E
Sbjct: 6 GIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPP------CRGFTPILADMYSELVDDS 59
Query: 117 A--EVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYGVYLED 174
A E++ VS D + + + + D L IP S ++ YG+
Sbjct: 60 APFEIIFVSSDR--SEDDMFQYMMESH-------GDWLAIPYRSGPASNVTAKYGI---- 106
Query: 175 KGHSLRG---LFIIDREGIV 191
G L I+ ++G +
Sbjct: 107 -----TGIPALVIVKKDGTL 121
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 46.4 bits (110), Expect = 1e-06
Identities = 26/162 (16%), Positives = 48/162 (29%), Gaps = 37/162 (22%)
Query: 67 VVDGNIKEIKLTDYRGKYLVFFFY-----PLDFTFVCPTEVLALNEKIDEFH-KIGAEVV 120
+ + GK + F+F P C L E ++ H E++
Sbjct: 33 KLRKQADTADMDSLSGKTVFFYFSASWCPP------CRGFTPQLVEFYEKHHDSKNFEII 86
Query: 121 GVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP-LLSDLTHEISRDYGVYLEDKGHSL 179
S D + K + L IP ++ +++ Y V S+
Sbjct: 87 LASWDE--EEDDFNAYYAK---------MPWLSIPFANRNIVEALTKKYSV------ESI 129
Query: 180 RGLFIIDRE-GIVRQITLNDLPVGRSVEETLRLVRAFQYTDE 220
L ++ + G +T R + F + DE
Sbjct: 130 PTLIGLNADTGDT--VTTR----ARHALTQDPMGEQFPWRDE 165
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 45.8 bits (109), Expect = 1e-06
Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 41/146 (28%)
Query: 57 KPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFF----YPLDFTFVCPTEVLALNEKIDEF 112
+P P + G + + ++ F+ C E L+ +E
Sbjct: 9 EPLPDFLLLDP-KG--QPVTPATVSKPAVIVFWASWCTV------CKAEFPGLHRVAEET 59
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLS---DLTHEISRDYG 169
G +S + T + +K IPLL+ D HE++ +
Sbjct: 60 ---GVPFYVISREPRDTREVVLEYMKTYP----------RFIPLLASDRDRPHEVAARFK 106
Query: 170 VYLEDKGHSLRGL---FIIDREGIVR 192
V G F++DREG V
Sbjct: 107 VL---------GQPWTFVVDREGKVV 123
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 44.6 bits (106), Expect = 4e-06
Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 34/147 (23%)
Query: 57 KPAPYWKG-TAVVDGNIKEIKLTDYRGKYLVFFFYPLDF-TFVCPT--EVLALNEKIDEF 112
+P P G A ++G + + K + + F + C E + + +
Sbjct: 5 QPMPELTGEKAWLNG--EVTREQLIGEKPTL-----IHFWSISCHLCKEAMPQVNEFRDK 57
Query: 113 HKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKI--PLLSDLTHEISRDYGV 170
++ VV V + +K+ + I P+ D H ++ +
Sbjct: 58 YQDQLNVVAVHMPR-SEDDLDPGKIKE--------TAAEHDITQPIFVDSDHALTDAFEN 108
Query: 171 YLEDKGHSLRGL---FIIDREGIVRQI 194
+ ++ D+ G +R
Sbjct: 109 ---------EYVPAYYVFDKTGQLRHF 126
>3me7_A Putative uncharacterized protein; electron transfer protein,
electron transport, structural GE PSI-2, protein
structure initiative; 1.50A {Aquifex aeolicus} PDB:
3me8_A
Length = 170
Score = 44.3 bits (105), Expect = 7e-06
Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 24/140 (17%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAEV--VGV 122
VD E +L + +GK ++ +T CP +L + I + G + +
Sbjct: 14 VDSYGNEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITF 70
Query: 123 SVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLL----SDLTHEISRDYGVYLEDKG-- 176
+ D T + +K+ +K+ +D ++ S+ ++ G
Sbjct: 71 TFDPKDT----LEDIKR---FQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGND 123
Query: 177 --HSLRGLFIIDREGIVRQI 194
H + ++ E ++
Sbjct: 124 FIHPN-VVVVLSPELQIKDY 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 2e-05
Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 32/184 (17%)
Query: 45 DHREGWTNAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLA 104
D W N K K T +++ ++ ++ +YR + +P + PT +L+
Sbjct: 339 DGLATWDN---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHI-PTILLS 393
Query: 105 L---NEKIDEFHKIGAEVVGVS-VDSH---FTHRAWINSLKKDNSLKKDNR-------LD 150
L + + + ++ S V+ T I S+ + +K +N +D
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHRSIVD 451
Query: 151 KLKIPL---LSDLTHEISRDYGV-YLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVE 206
IP DL Y ++ GH L+ + +R + R + L+ R +E
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTLFRMVFLDF----RFLE 504
Query: 207 ETLR 210
+ +R
Sbjct: 505 QKIR 508
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 3e-05
Identities = 42/256 (16%), Positives = 69/256 (26%), Gaps = 88/256 (34%)
Query: 20 MIRGMDTGSCSHTEMCSFTDSPTKFDHREGWTNA-VVMKPAPYWKGTAVVDGNIKEIKL- 77
M GMD + S ++ W A K + +V N + +
Sbjct: 1631 M--GMDL----------YKTSKAA---QDVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 78 -TDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWINS 136
+GK + + F + EKI + E+ S F
Sbjct: 1676 FGGEKGKRIRENY--SAMIFETIVDGKLKTEKIFK------EINEHSTSYTFRS------ 1721
Query: 137 LKKDNSLKKDNRLDKLKI--PLLSDLTHEIS-----RDYGVYLEDK---GHSLRGLFIID 186
+ L L + P L E + + G+ D GHSL G
Sbjct: 1722 ---EKGL-----LSATQFTQPAL--TLMEKAAFEDLKSKGLIPADATFAGHSL-G----- 1765
Query: 187 RE--------GIVRQITLNDLPVGRSVEETLRLVR----AFQYTDEHGEACPSGW----- 229
E ++ S+E + +V Q E S +
Sbjct: 1766 -EYAALASLADVM------------SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 230 QPGQRTISNREEDEKE 245
PG+ S +E +
Sbjct: 1813 NPGRVAASFSQEALQY 1828
Score = 33.5 bits (76), Expect = 0.077
Identities = 41/262 (15%), Positives = 71/262 (27%), Gaps = 92/262 (35%)
Query: 31 HTEMCSF-TDSPTKFDHREGW----TNAVVMKPAPYWKGT------AVVDGNIKEIKLTD 79
H ++ T + A +M P+ K + AV +GN + +
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ-L---- 156
Query: 80 YRGKYLVF--------FF---------YPLDFTFVCPTEVLALNEKIDEFHKIGAEVVGV 122
+F +F Y V + E + E + +
Sbjct: 157 ----VAIFGGQGNTDDYFEELRDLYQTYH---VLVGDL-IKFSAETLSELIRTTLDA--- 205
Query: 123 SVDSHFTH----RAWINSLKKDNSLKKDNRLDKLKI--PL--LSDLTHEISRDYGVYLED 174
+ FT W L+ ++ + L + I PL + L H Y V +
Sbjct: 206 --EKVFTQGLNILEW---LENPSNTPDKDYLLSIPISCPLIGVIQLAH-----YVVTAKL 255
Query: 175 KG-------HSLRGLFIIDREGIV--------------RQITLNDLPV----G-RSVEET 208
G L+G +G+V + V G R E
Sbjct: 256 LGFTPGELRSYLKGATGHS-QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 209 LRLV---RAFQYTDEHGEACPS 227
+ + E+ E PS
Sbjct: 315 PNTSLPPSILEDSLENNEGVPS 336
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A
2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 41.1 bits (97), Expect = 7e-05
Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 37/171 (21%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAE----VV 120
+ DY G++L+ +F FT VCP E+ + + +DE I +
Sbjct: 9 TTHTGERKTDKDYLGQWLLIYF---GFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPL 65
Query: 121 GVSVD-------------SHFTHR--AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165
+S+D F+ + + ++ + + + R+ P D
Sbjct: 66 FISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDED------ 119
Query: 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
Y+ D H+ +++I +G + G +R ++
Sbjct: 120 ---EDYIVD--HT-IIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 164
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 40.8 bits (96), Expect = 1e-04
Identities = 29/171 (16%), Positives = 58/171 (33%), Gaps = 37/171 (21%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAE----VV 120
+D + D+RG++++ +F FT +CP E+ L + + + V
Sbjct: 12 LDHRGRARCKADFRGQWVLMYF---GFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPV 68
Query: 121 GVSVD-------------SHFTHR--AWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEIS 165
++VD F R S K+ R+ P D
Sbjct: 69 FITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDED------ 122
Query: 166 RDYGVYLEDKGHSLRGLFIIDREGIVRQITLNDLPVGRSVEETLRLVRAFQ 216
Y+ D HS +++++ +G+ + + R + AF+
Sbjct: 123 ---QDYIVD--HS-IAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR 167
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural
genomics, montreal-kingsto bacterial structural genomics
initiative, BSGI; 1.70A {Bacillus subtilis} SCOP:
c.47.1.10 PDB: 1on4_A
Length = 174
Score = 40.4 bits (95), Expect = 1e-04
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 68 VDGNIKEIKLTDYRGKY-LVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAEV--VG 121
+ + K + L +G+ L F FT +CP + + + +V +
Sbjct: 19 QNQDGKNVSLESLKGEVWLADFI----FTNCETICPPMTAHMTDLQKKLKAENIDVRIIS 74
Query: 122 VSVD 125
SVD
Sbjct: 75 FSVD 78
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 39.3 bits (92), Expect = 4e-04
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTF---VCPTEVLALNEKIDEFHKIGAE---VVG 121
D E + GK+ + +F F+ +CP E+ L ++ +
Sbjct: 27 EDMYGNEFTEKNLLGKFSIIYF---GFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLF 83
Query: 122 VSVD 125
++ D
Sbjct: 84 ITCD 87
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 38.9 bits (91), Expect = 5e-04
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 59 APYWKGTAVVDGNIKEIKLTD---------YRGKYLVFFFYPLDFTF---VCPTEVLALN 106
+ GT +++ + L ++ K ++ FF FT VCPT +LAL
Sbjct: 3 MHTFYGTRLLNPKPVDFALEGPQGPVRLSQFQDKVVLLFF---GFTRCPDVCPTTLLALK 59
Query: 107 EKIDEFHKIGAE---VVGVSVD 125
++ E V+ VSVD
Sbjct: 60 RAYEKLPPKAQERVQVIFVSVD 81
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural
genomics consortium, SGC, protein binding; HET: M3L;
1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A
Length = 94
Score = 33.5 bits (76), Expect = 0.012
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 56 MKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
MK P+W +I + + KY +FFF + F+ P ++ ++ D++ K
Sbjct: 16 MKGYPHWPARID---DIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGK 71
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein,
structural genomics, riken struc genomics/proteomics
initiative, RSGI; 1.80A {Thermus thermophilus} SCOP:
c.47.1.10 PDB: 2ywo_A
Length = 188
Score = 34.6 bits (80), Expect = 0.014
Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 28/145 (19%)
Query: 68 VDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPT--EVLALNEKIDEFHKI---GAEVVGV 122
G +L+ + L F +C V ++ + VG+
Sbjct: 21 PRG--GRYRLSQFHEPLLAVVF-------MCNHCPYVKGSIGELVALAERYRGKVAFVGI 71
Query: 123 SVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYG------VYLEDKG 176
+ + + + ++ +K + + P L D T E+++ Y V+L D+
Sbjct: 72 NANDYEKYPE--DAPEK---MAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDER 126
Query: 177 HSL--RGLFIIDREGIVRQITLNDL 199
L G + D ++ +DL
Sbjct: 127 RLLRYHGR-VNDNPKDPSKVQSHDL 150
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
methylysine binding, STR genomics consortium, SGC,
alternative promoter usage; HET: DNA BTB; 2.30A {Homo
sapiens}
Length = 154
Score = 34.0 bits (77), Expect = 0.019
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 56 MKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
++ +W G V + + G V +F F+ VC +++ L+ FH+
Sbjct: 27 LRGFSWWPGRIVSWWMTGRSRAAE--GTRWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQ 83
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain,
heparin-binding, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Length = 110
Score = 32.0 bits (72), Expect = 0.050
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 56 MKPAPYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
MK P+W + E + KY VFFF + F+ P ++ E ++F K
Sbjct: 30 MKGYPHWPARID---EMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGK 85
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 30.3 bits (68), Expect = 0.21
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 82 GKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
G + VFFF D+ +V V E F +
Sbjct: 47 GDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAE 79
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
followed by five-helix bundle; HET: DNA; 1.80A {Mus
musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Length = 147
Score = 29.4 bits (65), Expect = 0.61
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 60 PYWKGTAVVDGNIKEIKLTDYRGKYLVFFFYPLDFTFVCPTEVLALNEKIDEFHK 114
+W A+V K G V +F F+ + +++AL F+
Sbjct: 26 SWW--PAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNL 78
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 28.8 bits (65), Expect = 1.1
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 27/77 (35%)
Query: 134 INSLKKDNSLK------KDNR------LDKLKIP---LLSDLTHEISRDYGVYLEDKGHS 178
+ L KD + KD L + P + D S ++GVY
Sbjct: 64 LTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY------- 116
Query: 179 LRGL---FIIDREGIVR 192
G+ F++ REG +
Sbjct: 117 --GVPETFVVGREGTIV 131
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 28.9 bits (65), Expect = 1.5
Identities = 6/35 (17%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 101 EVLALNEKIDEFHKIGAEVVGVSVDSHFTHRAWIN 135
E L + + I ++ + A V+ + + + + I+
Sbjct: 57 ESLDITDSIRDYDPLNASVISRNPTN-WNDQVEID 90
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 28.0 bits (63), Expect = 2.0
Identities = 33/152 (21%), Positives = 57/152 (37%), Gaps = 45/152 (29%)
Query: 52 NAVVMKPAPYWKGTAVVDGNIKEIKLTDYRGK-YLVFFF----YPLDFTFVCPTEVLALN 106
+A++ KP P + +V D + + D +GK LV + C E L
Sbjct: 29 SALIGKPFPAFDLPSVQDPA-RRLTEADLKGKPALVNVWGTWCPS------CRVEHPELT 81
Query: 107 EKIDEFHKIGAEVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIP---LLSDLTHE 163
+ G + G++ KD++ L++L P +SD
Sbjct: 82 R----LAEQGVVIYGINY--------------KDDNAAAIKWLNELHNPYLLSISDADGT 123
Query: 164 ISRDYGVYLEDKGHSLRGL---FIIDREGIVR 192
+ D GVY G ++ID++GI+R
Sbjct: 124 LGLDLGVY---------GAPETYLIDKQGIIR 146
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold,
peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium
falciparum} SCOP: c.47.1.10
Length = 182
Score = 28.1 bits (63), Expect = 2.1
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 24/151 (15%)
Query: 54 VVMKPAPYWKGTAVVDGNIKEIKLTDY-RGKYLVFFFYPLDFTFVCPTEVL-ALNEKIDE 111
+ ++ T + I + K ++ P FT C T+++ E+ D
Sbjct: 14 IDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDY 73
Query: 112 FHK-IGA-EVVGVSVDSHFTHRAWINSLKKDNSLKKDNRLDKLKIPLLSDLTHEISRDYG 169
F K ++ ++ + + ++W S+ KI +SD +
Sbjct: 74 FIKENNFDDIYCITNNDIYVLKSWFKSMDIK------------KIKYISDGNSSFTDSMN 121
Query: 170 VYLEDKGH------SLRGLFIIDREGIVRQI 194
+ L DK + R + I++ I+ ++
Sbjct: 122 M-LVDKSNFFMGMRPWRFVAIVE-NNILVKM 150
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 27.3 bits (60), Expect = 2.5
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 56 MKPAPYWKGTAVVDGNIKEIKLTDYRGK----YLVFFFYPLDFTFVCPTEVLALN-EKID 110
M P+W V + + + + Y V FF ++ + + L E I
Sbjct: 17 MSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTSEAIS 76
Query: 111 EFHK 114
+F +
Sbjct: 77 QFLE 80
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 27.6 bits (62), Expect = 3.0
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 15/60 (25%)
Query: 139 KDNSLKKDNRLDKLKIP---LLSDLTHEISRDYGVYLEDKGHSLRGL---FIIDREGIVR 192
KD+ K + L +L P L D + D GVY G F+ID GI+R
Sbjct: 89 KDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY---------GAPETFLIDGNGIIR 139
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.414
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,846,711
Number of extensions: 227311
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 102
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)