Query psy15457
Match_columns 71
No_of_seqs 105 out of 1045
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:34:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15022 ferritin-like protein 99.9 7.2E-23 1.6E-27 137.2 5.4 54 2-57 16-69 (167)
2 cd00904 Ferritin Ferritin iron 99.8 5.2E-21 1.1E-25 125.8 5.8 56 2-57 14-69 (160)
3 KOG2332|consensus 99.8 3E-20 6.5E-25 125.8 4.0 61 2-63 27-87 (178)
4 cd01056 Euk_Ferritin eukaryoti 99.8 1E-19 2.2E-24 119.3 5.7 56 2-57 14-69 (161)
5 PRK10304 ferritin; Provisional 99.8 1.7E-19 3.7E-24 120.1 5.4 54 2-57 16-69 (165)
6 COG1528 Ftn Ferritin-like prot 99.8 2.6E-19 5.6E-24 120.3 5.3 54 2-57 16-69 (167)
7 cd01055 Nonheme_Ferritin nonhe 99.6 6.7E-16 1.4E-20 99.6 6.3 54 2-57 14-67 (156)
8 cd01041 Rubrerythrin Rubreryth 99.4 7.8E-13 1.7E-17 84.2 4.9 54 2-57 12-65 (134)
9 PF00210 Ferritin: Ferritin-li 99.2 4.2E-11 9.1E-16 74.1 5.3 54 2-57 10-63 (142)
10 TIGR00754 bfr bacterioferritin 99.1 1.1E-10 2.3E-15 76.0 5.7 54 2-57 17-70 (157)
11 cd00907 Bacterioferritin Bacte 99.1 1.4E-10 3.1E-15 74.1 5.6 54 2-57 16-69 (153)
12 PRK10635 bacterioferritin; Pro 99.0 5.1E-10 1.1E-14 74.2 5.6 54 2-57 17-70 (158)
13 cd01046 Rubrerythrin_like rubr 98.9 1.8E-09 3.8E-14 68.5 4.7 46 2-49 12-57 (123)
14 cd01052 DPSL DPS-like protein, 98.8 2E-08 4.2E-13 63.9 5.9 54 2-57 17-70 (148)
15 cd00657 Ferritin_like Ferritin 97.9 7.3E-05 1.6E-09 43.6 6.0 51 2-57 9-59 (130)
16 PF02915 Rubrerythrin: Rubrery 97.2 0.00071 1.5E-08 41.3 4.3 53 2-57 9-61 (137)
17 cd07908 Mn_catalase_like Manga 97.0 0.003 6.5E-08 40.7 6.2 53 2-57 27-79 (154)
18 PRK13456 DNA protection protei 96.8 0.0053 1.2E-07 42.2 5.9 53 3-57 32-84 (186)
19 cd01045 Ferritin_like_AB Uncha 96.6 0.0098 2.1E-07 36.0 5.7 47 2-53 9-55 (139)
20 COG1592 Rubrerythrin [Energy p 96.5 0.0045 9.7E-08 41.8 3.9 49 3-53 16-64 (166)
21 cd01044 Ferritin_CCC1_N Ferrit 96.3 0.017 3.7E-07 36.1 5.8 51 2-57 9-59 (125)
22 COG2193 Bfr Bacterioferritin ( 95.3 0.073 1.6E-06 35.8 5.6 54 2-57 17-70 (157)
23 COG1633 Uncharacterized conser 93.4 0.3 6.6E-06 32.9 5.5 50 2-56 35-84 (176)
24 cd01043 DPS DPS protein, ferri 92.7 0.5 1.1E-05 29.6 5.5 43 14-57 20-62 (139)
25 cd01042 DMQH Demethoxyubiquino 92.6 0.47 1E-05 31.9 5.5 56 3-63 12-67 (165)
26 cd01051 Mn_catalase Manganese 91.2 1.1 2.4E-05 29.5 6.0 50 2-55 34-83 (156)
27 PF09537 DUF2383: Domain of un 89.2 1.1 2.3E-05 27.1 4.3 36 24-59 29-64 (111)
28 PF03232 COQ7: Ubiquinone bios 87.9 1.9 4.1E-05 29.1 5.2 57 3-63 14-70 (172)
29 PF07875 Coat_F: Coat F domain 87.2 2 4.2E-05 24.0 4.3 32 23-54 28-59 (64)
30 TIGR02284 conserved hypothetic 86.8 2.1 4.6E-05 27.5 4.8 37 22-58 26-62 (139)
31 cd01046 Rubrerythrin_like rubr 82.6 4.5 9.7E-05 25.2 4.8 46 3-50 75-120 (123)
32 cd00657 Ferritin_like Ferritin 78.5 7.8 0.00017 21.8 4.6 41 3-48 89-129 (130)
33 PRK09448 DNA starvation/statio 77.7 9.3 0.0002 25.1 5.3 50 7-57 37-86 (162)
34 cd07910 MiaE MiaE tRNA-modifyi 77.3 14 0.0003 25.4 6.1 51 3-57 30-80 (180)
35 PF00611 FCH: Fes/CIP4, and EF 76.9 6.5 0.00014 22.3 4.0 30 23-52 24-53 (91)
36 smart00055 FCH Fes/CIP4 homolo 76.6 6.8 0.00015 22.4 4.0 28 24-51 25-52 (87)
37 cd01041 Rubrerythrin Rubreryth 76.4 8.5 0.00018 24.0 4.7 43 6-50 89-131 (134)
38 PF02915 Rubrerythrin: Rubrery 74.4 11 0.00025 22.3 4.8 39 4-47 97-135 (137)
39 PRK12775 putative trifunctiona 72.2 10 0.00022 31.7 5.2 43 3-50 872-914 (1006)
40 COG5582 Uncharacterized conser 70.2 5.2 0.00011 27.5 2.7 38 25-62 10-47 (182)
41 cd01050 Acyl_ACP_Desat Acyl AC 70.0 12 0.00027 27.3 4.8 31 23-53 91-121 (297)
42 cd07908 Mn_catalase_like Manga 65.6 18 0.00039 22.9 4.4 41 3-48 113-153 (154)
43 cd07610 FCH_F-BAR The Extended 62.1 18 0.00039 23.3 4.0 34 23-56 15-48 (191)
44 cd01048 Ferritin_like_AB2 Unch 60.6 23 0.0005 22.4 4.2 47 3-57 12-58 (135)
45 cd01045 Ferritin_like_AB Uncha 60.6 33 0.00071 20.2 5.0 40 3-47 98-137 (139)
46 PRK12775 putative trifunctiona 57.4 33 0.00072 28.7 5.6 46 2-51 952-997 (1006)
47 cd01055 Nonheme_Ferritin nonhe 56.6 41 0.00089 21.1 4.9 46 3-50 92-137 (156)
48 COG2406 Protein distantly rela 56.3 54 0.0012 22.3 5.6 53 3-57 29-81 (172)
49 cd07653 F-BAR_CIP4-like The F- 53.5 26 0.00057 23.8 3.9 38 16-53 13-50 (251)
50 cd07651 F-BAR_PombeCdc15_like 52.2 26 0.00057 23.9 3.7 35 22-56 19-53 (236)
51 COG1633 Uncharacterized conser 51.7 66 0.0014 21.6 5.5 44 3-51 125-168 (176)
52 cd07656 F-BAR_srGAP The F-BAR 50.2 34 0.00073 24.0 4.0 32 24-55 21-52 (241)
53 PF04305 DUF455: Protein of un 49.6 67 0.0015 22.9 5.5 53 2-57 77-130 (253)
54 PF10097 DUF2335: Predicted me 49.5 42 0.00091 18.2 4.1 28 22-49 11-38 (50)
55 COG2941 CAT5 Ubiquinone biosyn 48.0 54 0.0012 23.0 4.6 55 3-62 53-107 (204)
56 cd07652 F-BAR_Rgd1 The F-BAR ( 47.8 42 0.00091 23.2 4.2 34 23-56 20-53 (234)
57 cd07648 F-BAR_FCHO The F-BAR ( 47.2 47 0.001 23.0 4.4 34 23-56 20-53 (261)
58 cd07647 F-BAR_PSTPIP The F-BAR 46.7 15 0.00032 25.4 1.7 34 22-55 19-52 (239)
59 PF11553 DUF3231: Protein of u 46.2 62 0.0014 20.8 4.6 34 23-56 122-155 (166)
60 COG0788 PurU Formyltetrahydrof 45.1 16 0.00035 26.8 1.8 37 22-70 167-203 (287)
61 PF03405 FA_desaturase_2: Fatt 44.0 64 0.0014 24.0 4.8 30 24-53 97-126 (330)
62 PF11860 DUF3380: Protein of u 43.1 36 0.00078 23.0 3.2 43 9-53 93-135 (175)
63 KOG1959|consensus 42.9 11 0.00025 31.7 0.8 56 12-68 275-330 (996)
64 cd07678 F-BAR_FCHSD1 The F-BAR 42.4 53 0.0012 23.6 4.1 40 13-52 10-49 (263)
65 COG0218 Predicted GTPase [Gene 41.8 16 0.00035 25.4 1.4 31 22-54 75-106 (200)
66 cd07657 F-BAR_Fes_Fer The F-BA 40.9 52 0.0011 23.0 3.8 28 24-51 21-48 (237)
67 PF06175 MiaE: tRNA-(MS[2]IO[6 40.6 50 0.0011 23.7 3.7 33 25-57 100-132 (240)
68 PF14331 ImcF-related_N: ImcF- 39.0 20 0.00043 25.2 1.5 22 23-44 81-102 (266)
69 PF13668 Ferritin_2: Ferritin- 38.6 78 0.0017 19.4 4.1 53 3-57 13-68 (137)
70 cd07676 F-BAR_FBP17 The F-BAR 36.8 53 0.0012 23.1 3.4 32 25-56 22-53 (253)
71 cd07654 F-BAR_FCHSD The F-BAR 36.5 68 0.0015 22.9 3.9 39 13-51 10-48 (264)
72 cd07673 F-BAR_FCHO2 The F-BAR 35.8 85 0.0018 22.2 4.3 31 25-55 29-59 (269)
73 PF10398 DUF2443: Protein of u 35.8 77 0.0017 19.0 3.4 31 22-52 41-72 (79)
74 cd00907 Bacterioferritin Bacte 35.7 1.1E+02 0.0023 18.9 5.1 44 4-49 94-137 (153)
75 COG3546 Mn-containing catalase 35.4 1.6E+02 0.0035 21.6 5.7 45 2-51 34-78 (277)
76 cd07675 F-BAR_FNBP1L The F-BAR 34.8 84 0.0018 22.4 4.1 30 25-54 22-51 (252)
77 PF12122 DUF3582: Protein of u 34.4 34 0.00074 21.1 1.9 18 40-57 11-28 (101)
78 PF10593 Z1: Z1 domain; Inter 33.8 1.6E+02 0.0036 20.4 5.7 50 6-57 165-223 (239)
79 PF01383 CpcD: CpcD/allophycoc 33.6 47 0.001 18.3 2.2 17 45-61 39-55 (56)
80 cd07686 F-BAR_Fer The F-BAR (F 33.3 82 0.0018 22.2 3.8 29 23-51 20-48 (234)
81 COG4445 MiaE Hydroxylase for s 32.7 95 0.002 21.6 3.9 37 26-62 59-95 (203)
82 cd07674 F-BAR_FCHO1 The F-BAR 31.7 1E+02 0.0022 21.6 4.1 30 25-54 22-51 (261)
83 PF12046 DUF3529: Protein of u 29.5 64 0.0014 22.0 2.7 26 37-62 41-66 (173)
84 cd04438 DEP_dishevelled DEP (D 28.9 71 0.0015 18.9 2.6 37 27-63 35-75 (84)
85 PRK07942 DNA polymerase III su 28.2 2E+02 0.0043 19.6 5.5 55 7-63 170-224 (232)
86 cd07655 F-BAR_PACSIN The F-BAR 28.0 46 0.001 23.3 1.9 35 22-56 19-53 (258)
87 cd07681 F-BAR_PACSIN3 The F-BA 28.0 1E+02 0.0022 22.0 3.7 35 23-57 20-54 (258)
88 COG0521 MoaB Molybdopterin bio 26.9 42 0.00092 22.7 1.5 25 11-38 87-111 (169)
89 cd07658 F-BAR_NOSTRIN The F-BA 26.7 1.3E+02 0.0028 20.8 3.9 29 23-51 20-48 (239)
90 cd07650 F-BAR_Syp1p_like The F 26.5 1.4E+02 0.0031 20.5 4.0 29 25-53 22-50 (228)
91 KOG3076|consensus 26.4 41 0.00088 23.6 1.3 31 24-64 90-120 (206)
92 cd07672 F-BAR_PSTPIP2 The F-BA 26.1 1.6E+02 0.0035 20.6 4.3 29 23-51 20-48 (240)
93 PF09153 DUF1938: Domain of un 26.1 76 0.0016 19.4 2.3 24 39-62 38-62 (86)
94 cd07671 F-BAR_PSTPIP1 The F-BA 26.0 1.5E+02 0.0033 20.7 4.2 34 24-57 21-54 (242)
95 PF14513 DAG_kinase_N: Diacylg 25.9 42 0.00092 21.9 1.3 26 13-38 40-65 (138)
96 PF12834 Phage_int_SAM_2: Phag 25.1 1.3E+02 0.0029 17.8 3.3 24 39-62 26-49 (91)
97 PF10704 DUF2508: Protein of u 24.4 91 0.002 17.7 2.4 19 33-51 22-40 (71)
98 PF13041 PPR_2: PPR repeat fam 24.4 83 0.0018 15.8 2.1 21 37-57 17-37 (50)
99 TIGR00178 monomer_idh isocitra 23.6 1.9E+02 0.0041 23.9 4.7 58 5-63 657-716 (741)
100 PF07744 SPOC: SPOC domain; I 23.2 1.3E+02 0.0027 17.8 3.0 21 34-54 78-98 (119)
101 PF13812 PPR_3: Pentatricopept 22.3 93 0.002 13.8 2.5 18 39-56 17-34 (34)
102 PF02025 IL5: Interleukin 5; 22.2 22 0.00049 22.7 -0.5 13 24-36 61-73 (113)
103 COG0299 PurN Folate-dependent 22.2 54 0.0012 22.9 1.3 17 48-64 96-112 (200)
104 COG3589 Uncharacterized conser 21.8 1.1E+02 0.0023 23.3 2.9 33 35-68 44-77 (360)
105 PHA01794 hypothetical protein 21.8 1.6E+02 0.0035 19.4 3.4 26 28-53 87-112 (134)
106 PF11583 AurF: P-aminobenzoate 21.7 1.7E+02 0.0036 20.5 3.8 29 25-53 112-140 (304)
107 cd07680 F-BAR_PACSIN1 The F-BA 21.6 2.1E+02 0.0046 20.4 4.3 32 23-54 20-51 (258)
108 COG3512 CRISPR-associated prot 21.2 1.2E+02 0.0026 19.3 2.6 24 34-57 18-41 (116)
109 cd07684 F-BAR_srGAP3 The F-BAR 21.2 1.9E+02 0.004 21.0 3.9 24 25-48 22-45 (253)
110 cd07682 F-BAR_srGAP2 The F-BAR 21.1 1.9E+02 0.0041 21.1 3.9 25 25-49 22-46 (263)
111 cd07649 F-BAR_GAS7 The F-BAR ( 20.5 2.4E+02 0.0052 19.6 4.3 32 23-54 20-51 (233)
112 COG3461 Uncharacterized conser 20.4 2E+02 0.0044 18.0 3.5 28 25-52 46-73 (103)
No 1
>PRK15022 ferritin-like protein; Provisional
Probab=99.87 E-value=7.2e-23 Score=137.18 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=52.0
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|++|||+|||||+||++ .+||||++||+.||+|||+||+||++|+++|||+|.
T Consensus 16 ~E~~aSy~YLsMa~~~~~--~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~ 69 (167)
T PRK15022 16 LEFYASNLYLHLSEWCSE--QSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPI 69 (167)
T ss_pred HHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcee
Confidence 589999999999999986 599999999999999999999999999999999998
No 2
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=99.83 E-value=5.2e-21 Score=125.75 Aligned_cols=56 Identities=39% Similarity=0.432 Sum_probs=54.4
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|++||+.|++||.||+++++++|||++||+.+|+|||+||+++++|+++|||+|.
T Consensus 14 ~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~ 69 (160)
T cd00904 14 LELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVE 69 (160)
T ss_pred HHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc
Confidence 48999999999999999988999999999999999999999999999999999988
No 3
>KOG2332|consensus
Probab=99.80 E-value=3e-20 Score=125.84 Aligned_cols=61 Identities=38% Similarity=0.465 Sum_probs=57.7
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVL 63 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~~ 63 (71)
.|+++||.|++||+||+++++++|||++||..+|+|||+||+++++|+|+|||+|+ .+++.
T Consensus 27 ~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~-l~~i~ 87 (178)
T KOG2332|consen 27 LELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIE-LQDIK 87 (178)
T ss_pred chhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccc-ccccc
Confidence 58999999999999999999999999999999999999999999999999999998 55554
No 4
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=99.80 E-value=1e-19 Score=119.33 Aligned_cols=56 Identities=45% Similarity=0.511 Sum_probs=54.3
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|+.||+.|++||.||++.++++|||++||+.+|+|||+||+++++|+++|||+|.
T Consensus 14 ~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~ 69 (161)
T cd01056 14 LELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVV 69 (161)
T ss_pred HHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee
Confidence 48999999999999999988899999999999999999999999999999999988
No 5
>PRK10304 ferritin; Provisional
Probab=99.79 E-value=1.7e-19 Score=120.07 Aligned_cols=54 Identities=31% Similarity=0.197 Sum_probs=52.0
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.||+||+.|++||.||+. .++||+++||+.+|+||++||.++++|+++|||+|.
T Consensus 16 ~El~As~~Yl~ma~~~~~--~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~ 69 (165)
T PRK10304 16 LELYSSLLYQQMSAWCSY--HTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPR 69 (165)
T ss_pred HHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 489999999999999997 599999999999999999999999999999999997
No 6
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=99.78 E-value=2.6e-19 Score=120.27 Aligned_cols=54 Identities=37% Similarity=0.420 Sum_probs=52.1
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|++||+.|++||+||+. .++||+|+||+.||+||+.||+||++|+++||++|.
T Consensus 16 ~E~yas~lYl~maa~~~~--~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~ 69 (167)
T COG1528 16 LEFYASNLYLQMAAWCSS--ESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPE 69 (167)
T ss_pred HHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 589999999999999996 599999999999999999999999999999999988
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=99.63 E-value=6.7e-16 Score=99.63 Aligned_cols=54 Identities=43% Similarity=0.525 Sum_probs=52.0
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|+.|++.|+++|.||++. ++||+++||+.+|++|++||+++++|+++|||+|.
T Consensus 14 ~El~A~~~Yl~~a~~~~~~--~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~ 67 (156)
T cd01055 14 LELYSSYLYLAMAAWFDSK--GLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVE 67 (156)
T ss_pred HHHHHHHHHHHHHHHHhhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCee
Confidence 4899999999999999985 99999999999999999999999999999999987
No 8
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.37 E-value=7.8e-13 Score=84.20 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=51.5
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|+.|++.|+++|.|++.. +++|+++||+.+|.+|+.||.+++++++++||.|.
T Consensus 12 ~E~~a~~~Y~~~a~~a~~~--g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~ 65 (134)
T cd01041 12 GESQARNRYTYFAEKARKE--GYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT 65 (134)
T ss_pred hHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4889999999999999985 99999999999999999999999999999999977
No 9
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.19 E-value=4.2e-11 Score=74.15 Aligned_cols=54 Identities=35% Similarity=0.380 Sum_probs=50.0
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|+.+++.|++++.+|+. .+++|+++||+.+|+++++||..+.+++.+|||.+.
T Consensus 10 ~e~~~~~~y~~~~~~~~~--~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~ 63 (142)
T PF00210_consen 10 LELQASQQYLNMHWNFDG--PNFPGLAKFFQDQAEEEREHADELAERILMLGGKPS 63 (142)
T ss_dssp HHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SS
T ss_pred HHHHHHHHHHHHHHHhcC--CCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 378999999999999994 699999999999999999999999999999999665
No 10
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.14 E-value=1.1e-10 Score=76.02 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=51.2
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|+.|++.|+.++.|+.. .+++|++.||+.++.||++||.++.++++++||.|.
T Consensus 17 ~E~~a~~~Y~~~~~~~~~--~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~ 70 (157)
T TIGR00754 17 NELTAINQYFLHARMQKN--WGLKELADHEYHESIDEMKHADEIIERILFLEGLPN 70 (157)
T ss_pred HHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 378999999999999965 599999999999999999999999999999999998
No 11
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.12 E-value=1.4e-10 Score=74.11 Aligned_cols=54 Identities=22% Similarity=0.200 Sum_probs=51.1
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|+.+++.|++++.||+. .+++|+++||+.+|.+|++||..+.++++++||+|.
T Consensus 16 ~E~~a~~~Y~~~a~~~~~--~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~ 69 (153)
T cd00907 16 GELTAINQYFLHARMLED--WGLEKLAERFRKESIEEMKHADKLIERILFLEGLPN 69 (153)
T ss_pred HHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 478999999999999976 599999999999999999999999999999999987
No 12
>PRK10635 bacterioferritin; Provisional
Probab=99.04 E-value=5.1e-10 Score=74.15 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=51.8
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|+.|++.|+.+|.+|+. -++++++.+|+.+|.||++||.+|++++..+||.|.
T Consensus 17 ~El~Ai~QY~~ha~~~~~--~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~ 70 (158)
T PRK10635 17 NELVAINQYFLHARMFKN--WGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPN 70 (158)
T ss_pred HHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 489999999999999997 599999999999999999999999999999999998
No 13
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=98.93 E-value=1.8e-09 Score=68.47 Aligned_cols=46 Identities=30% Similarity=0.314 Sum_probs=43.7
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYL 49 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl 49 (71)
.|++++..|+++|.|++.. |+||+++||+.+|.+|+.||.++.+++
T Consensus 12 ~E~~a~~~Y~~~a~~a~~e--G~~~~A~~f~~~a~eE~~HA~~~~~~l 57 (123)
T cd01046 12 GETTEVGMYLAMARVAQRE--GYPEVAEELKRIAMEEAEHAARFAELL 57 (123)
T ss_pred hHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999985 999999999999999999999999977
No 14
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=98.78 E-value=2e-08 Score=63.87 Aligned_cols=54 Identities=17% Similarity=-0.006 Sum_probs=50.9
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|+.++..|..++.++.. .++++++++|..++.+|++||..+.++++.+||+|.
T Consensus 17 ~e~~~~~~y~~~~~~~~g--~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~ 70 (148)
T cd01052 17 DEWLAYYYYTILAKHVKG--PEGEGIKEELEEAAEEELNHAELLAERIYELGGTPP 70 (148)
T ss_pred HHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 378899999999999887 489999999999999999999999999999999998
No 15
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=97.87 E-value=7.3e-05 Score=43.56 Aligned_cols=51 Identities=24% Similarity=0.182 Sum_probs=46.5
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|..++..|..++..+. .+++...|..++.+|..|+..+.+++..+|+.+.
T Consensus 9 ~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~ 59 (130)
T cd00657 9 GEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPP 59 (130)
T ss_pred HHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 47889999999998765 5889999999999999999999999999999887
No 16
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=97.22 E-value=0.00071 Score=41.26 Aligned_cols=53 Identities=21% Similarity=0.130 Sum_probs=47.2
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|..+...|..+|.-+.++ + |-+.+.|...|.+|.+|+..+.+.+.++++...
T Consensus 9 ~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~ 61 (137)
T PF02915_consen 9 MELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEE 61 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 4788999999999998875 6 899999999999999999999999998876544
No 17
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=97.04 E-value=0.003 Score=40.66 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=45.2
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|+.|...|+.-+.-... .-+.+++.|...|.+|..|+..+.+.+.+.||.+.
T Consensus 27 ~E~~ai~~Y~y~~~~~~~---~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~ 79 (154)
T cd07908 27 SELTAISQYIYQHLISEE---KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPR 79 (154)
T ss_pred hHHHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 377888888887666543 67899999999999999999999999999999776
No 18
>PRK13456 DNA protection protein DPS; Provisional
Probab=96.77 E-value=0.0053 Score=42.18 Aligned_cols=53 Identities=15% Similarity=0.059 Sum_probs=47.9
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
|+.+.+-|...++.... +.-++++.|+...+.||+.||+.+.+-+.+-||.+.
T Consensus 32 E~~a~~~Y~~~a~~~~G--~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~ 84 (186)
T PRK13456 32 EFTTYYYYTILRAHLIG--LEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLP 84 (186)
T ss_pred HHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 77888889888888775 678899999999999999999999999999999987
No 19
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=96.60 E-value=0.0098 Score=36.03 Aligned_cols=47 Identities=21% Similarity=0.173 Sum_probs=42.2
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RG 53 (71)
.|..+...|..++..+++ +++..+|+..|.+|..|+..+...+...|
T Consensus 9 ~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 9 MEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478899999999988664 38999999999999999999999998886
No 20
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=96.47 E-value=0.0045 Score=41.83 Aligned_cols=49 Identities=18% Similarity=0.113 Sum_probs=43.2
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RG 53 (71)
|=.|-..|+.+|...++. ++|.+++.|+..|.+|..||..+++.+.+-+
T Consensus 16 Es~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~ 64 (166)
T COG1592 16 ESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL 64 (166)
T ss_pred hHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 446778899999999886 9999999999999999999999999887643
No 21
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=96.34 E-value=0.017 Score=36.13 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=44.2
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|..+...|-.+|....+ |...+.|...|++|++|+.-+-+.+.+.|+++.
T Consensus 9 ~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~ 59 (125)
T cd01044 9 DEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP 59 (125)
T ss_pred HHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 377888899999887543 459999999999999999999999999998864
No 22
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.073 Score=35.79 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=47.1
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.||.|-+-|.-=|.-+.+ -++.-++++|+.+|.+|..||.++++-+.--+|.|.
T Consensus 17 ~EL~ainQYflHsrM~~~--WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pn 70 (157)
T COG2193 17 LELAAINQYFLHSRMYKN--WGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPN 70 (157)
T ss_pred HHHHHHHHHHHHHHHHhC--cChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 367788888877777775 599999999999999999999999999999999887
No 23
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=0.3 Score=32.91 Aligned_cols=50 Identities=22% Similarity=0.109 Sum_probs=44.9
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLT 56 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v 56 (71)
.|..|-..|..+|...++. -+.+.|...|.+|+.|...|-+.+.+++.+.
T Consensus 35 ~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 35 GELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred HHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4788999999999998873 4899999999999999999999999988876
No 24
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=92.74 E-value=0.5 Score=29.60 Aligned_cols=43 Identities=14% Similarity=-0.041 Sum_probs=37.6
Q ss_pred hccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 14 a~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
..|.-. +.++..+..+|.++++++++|+..+.+-+..-||.|.
T Consensus 20 ~HW~v~-G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~ 62 (139)
T cd01043 20 YHWNVK-GPNFFALHELFEELYDELREAIDEIAERIRALGGKPL 62 (139)
T ss_pred CCcCcc-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 445444 4688888999999999999999999999999999988
No 25
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=92.56 E-value=0.47 Score=31.86 Aligned_cols=56 Identities=18% Similarity=0.071 Sum_probs=48.7
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVL 63 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~~ 63 (71)
|+-|-.+|..=+..+.. |....++.+.+++|.+|-..|=+.+.++|++++-.+|+.
T Consensus 12 E~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW 67 (165)
T cd01042 12 EVGAVRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLW 67 (165)
T ss_pred hHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 67788888887776543 889999999999999999999999999999999887763
No 26
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=91.17 E-value=1.1 Score=29.52 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=43.2
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNL 55 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~ 55 (71)
.|+.|...|+.=++-++ ..+.+...|...|.||..|++.+-.-+..-|+.
T Consensus 34 gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~ 83 (156)
T cd01051 34 GELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKD 83 (156)
T ss_pred HHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 38899999999888873 448899999999999999999999988877753
No 27
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=89.17 E-value=1.1 Score=27.15 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=29.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Q psy15457 24 RPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYH 59 (71)
Q Consensus 24 l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~ 59 (71)
=|.+..+|.+.+++...|+..|-.++.+.||.+.+-
T Consensus 29 ~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~ 64 (111)
T PF09537_consen 29 DPELKSLFQEFAQERQQHAEELQAEIQELGGEPEES 64 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence 378999999999999999999999999999999843
No 28
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=87.88 E-value=1.9 Score=29.11 Aligned_cols=57 Identities=21% Similarity=0.129 Sum_probs=47.1
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVL 63 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~~ 63 (71)
|+-|-.+|-.=...+.. .|....+++...++|.+|-..|-+.+.++|.++.-++|+.
T Consensus 14 E~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw 70 (172)
T PF03232_consen 14 EVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLW 70 (172)
T ss_pred HHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHH
Confidence 56667777776665442 6789999999999999999999999999999988777764
No 29
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=87.18 E-value=2 Score=23.97 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=29.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGN 54 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg 54 (71)
+=|.+-..|.....+..+.+..++++++++|-
T Consensus 28 ~np~lR~~l~~~~~~~~~~~~~l~~~m~~kGw 59 (64)
T PF07875_consen 28 ANPELRQILQQILNECQQMQYELFNYMNQKGW 59 (64)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45889999999999999999999999999985
No 30
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=86.80 E-value=2.1 Score=27.51 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=34.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Q psy15457 22 VNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDY 58 (71)
Q Consensus 22 ~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~ 58 (71)
+.-|.+..+|...+.+...|+..|-..+...||.+.+
T Consensus 26 v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~ 62 (139)
T TIGR02284 26 VKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPED 62 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4558899999999999999999999999999999884
No 31
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=82.61 E-value=4.5 Score=25.24 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=37.3
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLT 50 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~ 50 (71)
|...+..|-.++..+... +....+.||+...+.|.+|+..+-+.+.
T Consensus 75 E~~~~~~~~~~~~~A~~e--gd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 75 EAGANEGKKDAATEAKAE--GLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred HHHHHHhHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555677777777764 8899999999999999999999987664
No 32
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=78.53 E-value=7.8 Score=21.82 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=32.7
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISY 48 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~y 48 (71)
|-.+...|..++..+. -+....++.....+|..|...+.++
T Consensus 89 E~~~~~~y~~~~~~~~-----d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 89 EARAIAAYRELIEQAD-----DPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567778888776655 3568999999999999999988765
No 33
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=77.66 E-value=9.3 Score=25.15 Aligned_cols=50 Identities=6% Similarity=-0.130 Sum_probs=40.8
Q ss_pred hhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 7 SHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 7 S~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.+.-+.-..|.-. +.+...+..+|.++++++++|+..+-+-+..-||.+.
T Consensus 37 l~~k~~~~hW~v~-G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~ 86 (162)
T PRK09448 37 LSLITKQAHWNMK-GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVAL 86 (162)
T ss_pred HHHHHhhhhhhcc-CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 3344444566555 3677788999999999999999999999999999988
No 34
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=77.26 E-value=14 Score=25.43 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=40.1
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
|..|+-+=++|-.-|. +.+++..=+-..+.||..|=+..++.+.+||....
T Consensus 30 E~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi~l~ 80 (180)
T cd07910 30 EKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRGIPLG 80 (180)
T ss_pred HHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4556666566544444 45788889999999999999999999999998664
No 35
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=76.85 E-value=6.5 Score=22.32 Aligned_cols=30 Identities=27% Similarity=0.119 Sum_probs=24.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMR 52 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~R 52 (71)
.+..+..||++.+.-|.++|..|-+.-.+-
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~~~~ 53 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLAKKF 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999998765543
No 36
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=76.58 E-value=6.8 Score=22.37 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 24 RPGFAKFFFTSASEEREHAIKFISYLTM 51 (71)
Q Consensus 24 l~Gfa~fF~~qs~eE~ehA~~l~~yl~~ 51 (71)
+.-+..||+++|+=|.++|.+|-+...+
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4458999999999999999999998764
No 37
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=76.39 E-value=8.5 Score=23.98 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=36.8
Q ss_pred HhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 6 DSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLT 50 (71)
Q Consensus 6 aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~ 50 (71)
+.-.|-.++..+... +-.+.+.+|.....+|..|+..|=+.+.
T Consensus 89 ~~~~y~~~~~~A~~e--~d~~~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 89 YTEMYPEFAEVAEEE--GFKEAARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 557888888888864 8999999999999999999999876554
No 38
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=74.37 E-value=11 Score=22.33 Aligned_cols=39 Identities=21% Similarity=0.113 Sum_probs=29.2
Q ss_pred hHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHH
Q psy15457 4 DGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFIS 47 (71)
Q Consensus 4 l~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~ 47 (71)
-.+...|..++... +-|...+.|...+.+|+.|...|-+
T Consensus 97 ~~~~~~Y~~~a~~~-----~~~~~~~~~~~l~~~E~~H~~~l~~ 135 (137)
T PF02915_consen 97 KDAYEFYAELARKA-----PDPEIRKLFEELAKEEKEHEDLLEK 135 (137)
T ss_dssp HTHHHHHHHHHHHT-----TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666554 3467899999999999999998865
No 39
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=72.18 E-value=10 Score=31.70 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=34.2
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLT 50 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~ 50 (71)
|-..-..|..+|.-. .-+.+.++|...|++|++|...|.+...
T Consensus 872 E~~g~~FY~~~A~~a-----~~~~~K~lF~~LA~eE~~H~~~l~~~~~ 914 (1006)
T PRK12775 872 ELGGMAFYARAAKET-----SDPVLKELFLKFAGMEQEHMATLARRYH 914 (1006)
T ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666777777663 4478999999999999999999987764
No 40
>COG5582 Uncharacterized conserved protein [Function unknown]
Probab=70.21 E-value=5.2 Score=27.49 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHV 62 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~ 62 (71)
+.|-+||..|.+=++.-|..+++|+......+.+||=+
T Consensus 10 kdFirwfL~q~qlK~Rea~wvLnYl~~hd~lle~VhFv 47 (182)
T COG5582 10 KDFIRWFLNQYQLKRREAVWVLNYLMSHDALLENVHFV 47 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 46899999999999999999999999877777766643
No 41
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=70.01 E-value=12 Score=27.27 Aligned_cols=31 Identities=23% Similarity=0.376 Sum_probs=27.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRG 53 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RG 53 (71)
.-+++++|......||..|+.-|.+|+.-.|
T Consensus 91 ~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg 121 (297)
T cd01050 91 SPTAWARWVRRWTAEENRHGDLLNKYLYLTG 121 (297)
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 4478999999999999999999999997643
No 42
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=65.56 E-value=18 Score=22.92 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=32.5
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISY 48 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~y 48 (71)
|-.|-..|..++...+ =+.....+...+.+|.+|...|-+.
T Consensus 113 E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 113 EKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred HHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5567788888887532 3778999999999999999887553
No 43
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=62.09 E-value=18 Score=23.33 Aligned_cols=34 Identities=15% Similarity=0.037 Sum_probs=28.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGNLT 56 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v 56 (71)
-+..+..||++.|+=|.++|..|-+.-..-.+..
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~ 48 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKP 48 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4557999999999999999999998877655443
No 44
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=60.62 E-value=23 Score=22.41 Aligned_cols=47 Identities=19% Similarity=0.058 Sum_probs=36.8
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
|-.+-..|..++--+. ..+-|...+..|.+|...+.+.+.+.|.+..
T Consensus 12 Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p 58 (135)
T cd01048 12 EKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDP 58 (135)
T ss_pred HHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5566778888777652 4567888899999999999999988776654
No 45
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=60.60 E-value=33 Score=20.22 Aligned_cols=40 Identities=23% Similarity=0.120 Sum_probs=30.3
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHH
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFIS 47 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~ 47 (71)
|-.+...|-.++.-+.+ +-....|...+++|+.|...+-+
T Consensus 98 E~~~~~~Y~~~~~~~~d-----~~~~~~~~~l~~~E~~H~~~l~~ 137 (139)
T cd01045 98 EKDAIEFYEELAEKAED-----PEVKKLFEELAEEERGHLRLLEE 137 (139)
T ss_pred HHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777755432 35889999999999999998865
No 46
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=57.44 E-value=33 Score=28.73 Aligned_cols=46 Identities=17% Similarity=-0.000 Sum_probs=35.8
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTM 51 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~ 51 (71)
.|-.|-..|.-+|..-.+. +...++|...|+||++|...|-+.+.+
T Consensus 952 ~Ekdai~fY~~la~~~~d~----e~~k~l~~~LA~EEk~Hl~~L~~~~d~ 997 (1006)
T PRK12775 952 FERRAVKFFKERVAETPDG----SVERQLYKELAAEEREHVALLTTEFER 997 (1006)
T ss_pred HHHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888875531 235799999999999999999887654
No 47
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=56.58 E-value=41 Score=21.08 Aligned_cols=46 Identities=11% Similarity=-0.099 Sum_probs=37.2
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLT 50 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~ 50 (71)
|-.+...|..++..+... +-+..+.||..-.+++.+|...+-+++.
T Consensus 92 E~~~~~~~~~l~~~A~~~--~D~~~~~~l~~~l~~q~e~~~~~~~~l~ 137 (156)
T cd01055 92 EQKVTESINNLVDLALEE--KDYATFNFLQWFVKEQVEEEALARDILD 137 (156)
T ss_pred HHHHHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889998888764 6688899999888888888888877766
No 48
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=56.30 E-value=54 Score=22.28 Aligned_cols=53 Identities=11% Similarity=-0.049 Sum_probs=39.2
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
|+.+.|-|.-+++-.-. ..=.|...|....-+|-+.|++.+..-+.+-||.+.
T Consensus 29 E~tt~YYYtilr~~l~G--le~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~P 81 (172)
T COG2406 29 EWTTYYYYTILRYALKG--LEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLP 81 (172)
T ss_pred HHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 56666666665555442 344567778888888889999999999999999776
No 49
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=53.55 E-value=26 Score=23.84 Aligned_cols=38 Identities=21% Similarity=0.117 Sum_probs=29.0
Q ss_pred cccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15457 16 HFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53 (71)
Q Consensus 16 ~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RG 53 (71)
+.+....-+..+..||++.|+=|.++|.+|.+.-..-.
T Consensus 13 ~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~ 50 (251)
T cd07653 13 HTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYL 50 (251)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334567999999999999999999998776543
No 50
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=52.18 E-value=26 Score=23.90 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=28.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy15457 22 VNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLT 56 (71)
Q Consensus 22 ~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v 56 (71)
..+..+..||++.|.=|.++|.+|.+.-.+-++.+
T Consensus 19 ~~~~el~~f~keRa~iE~eYak~L~kLakk~~~~~ 53 (236)
T cd07651 19 RTLEELRSFYKERASIEEEYAKRLEKLSRKSLGGS 53 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 34567999999999999999999998877665543
No 51
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=51.68 E-value=66 Score=21.56 Aligned_cols=44 Identities=20% Similarity=0.113 Sum_probs=33.5
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTM 51 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~ 51 (71)
|-.+..+|.-++..-.+ ++..+.|+..++.|+.|+..+..+.+.
T Consensus 125 E~~t~~~Y~~~~~~~~~-----~~~~~~~~~~a~~E~~H~~~l~~~~~~ 168 (176)
T COG1633 125 EKDTIEFYEELLDELVN-----EEAKKLFKTIADDEKGHASGLLSLYNR 168 (176)
T ss_pred HHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677776665443 568889999999999999999877654
No 52
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.20 E-value=34 Score=24.00 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=26.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q psy15457 24 RPGFAKFFFTSASEEREHAIKFISYLTMRGNL 55 (71)
Q Consensus 24 l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~ 55 (71)
+..+..||++.|+-|.+.|..|.+.-.+-..+
T Consensus 21 Led~~~F~r~RaeIE~EYs~~L~kL~k~~~~K 52 (241)
T cd07656 21 LADLQDYFRRRAEIELEYSRSLEKLADRFSSK 52 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45789999999999999999999876654443
No 53
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=49.64 E-value=67 Score=22.88 Aligned_cols=53 Identities=19% Similarity=0.076 Sum_probs=40.5
Q ss_pred chhHHhhHhhhhhccccccccCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRP-GFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~-Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
.|++|-...+-..+=|.. ++| .|-.=|.+.+.+|..|-..+.+.|.+-|...=
T Consensus 77 IE~~AIdLa~Da~~RF~~---~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yG 130 (253)
T PF04305_consen 77 IELNAIDLALDAIYRFHP---NLPREFYDDWLRVADDEARHFRLLRERLEELGSDYG 130 (253)
T ss_pred hHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 478888888887777722 555 45444556888999999999999999998654
No 54
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=49.54 E-value=42 Score=18.18 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=23.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 22 VNRPGFAKFFFTSASEEREHAIKFISYL 49 (71)
Q Consensus 22 ~~l~Gfa~fF~~qs~eE~ehA~~l~~yl 49 (71)
.-+||.+.-....++.|.+|-..+-+-.
T Consensus 11 ~i~Pg~aerI~~mae~eq~hR~~~e~~~ 38 (50)
T PF10097_consen 11 QILPGAAERIFAMAEKEQEHRHELEKKA 38 (50)
T ss_pred hHCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999998885433
No 55
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=47.97 E-value=54 Score=23.02 Aligned_cols=55 Identities=18% Similarity=-0.019 Sum_probs=42.5
Q ss_pred hhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc
Q psy15457 3 EDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHV 62 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~ 62 (71)
|+-|-.+|..=+.+.... ..---.++.+++|..|---+=+++.+||.++.=.+|+
T Consensus 53 E~~A~~iY~GQ~~~~r~~-----~~R~~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~ 107 (204)
T COG2941 53 ELGAQAIYQGQAAVARSP-----EPRIQLKEMADEEIDHLAWFEQRLLELGVRPSLLNPL 107 (204)
T ss_pred HHHHHHHHhhHHHHHcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHH
Confidence 666777777766665432 2233788899999999999999999999999877776
No 56
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=47.80 E-value=42 Score=23.25 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=27.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGNLT 56 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v 56 (71)
....|+.|+++.|.=|.+||..+.+.-..-...+
T Consensus 20 ~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~ 53 (234)
T cd07652 20 SAKEFATFLKKRAAIEEEHARGLKKLARTTLDTY 53 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456999999999999999999998766554433
No 57
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.19 E-value=47 Score=22.98 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGNLT 56 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v 56 (71)
...-++.|+++.|.-|.++|..|.+....-.+..
T Consensus 20 ~~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~ 53 (261)
T cd07648 20 AVKELADFLRERATIEETYSKALNKLAKQASNSS 53 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456899999999999999999999887765543
No 58
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=46.69 E-value=15 Score=25.38 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=28.1
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q psy15457 22 VNRPGFAKFFFTSASEEREHAIKFISYLTMRGNL 55 (71)
Q Consensus 22 ~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~ 55 (71)
.....++.||++.|.-|.++|.+|.+.-..-++.
T Consensus 19 ~~~~el~~f~keRa~iE~eYak~L~kLak~~~~~ 52 (239)
T cd07647 19 KMCKELEDFLKQRAKAEEDYGKALLKLSKSAGPG 52 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3455689999999999999999999987765543
No 59
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=46.23 E-value=62 Score=20.82 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=27.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGNLT 56 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v 56 (71)
..+-+..+|.+...+..+-+.+..+++.++|--.
T Consensus 122 ~R~Dl~~~f~~~~~~~~~~~~~~~~l~~~KGwl~ 155 (166)
T PF11553_consen 122 VRNDLRAFFMKFLMEALELYDKIVKLMKEKGWLE 155 (166)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcC
Confidence 4455899999999999999999999999988643
No 60
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=45.11 E-value=16 Score=26.82 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=27.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccccC
Q psy15457 22 VNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIPSTI 70 (71)
Q Consensus 22 ~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~~~~~~~~~ 70 (71)
.++-=+|+|++..|.+ +..+-.|++.|+||+.+ |+.+
T Consensus 167 ~DlvVLARYMqILS~d----------~~~~~~g~iINIHHSFL--PaF~ 203 (287)
T COG0788 167 ADLVVLARYMQILSPD----------FVERFPGKIINIHHSFL--PAFI 203 (287)
T ss_pred CCEEeehhhHhhCCHH----------HHHhccCcEEEeccccc--ccCC
Confidence 4566678888888764 45667899999999987 7654
No 61
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=44.03 E-value=64 Score=24.04 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15457 24 RPGFAKFFFTSASEEREHAIKFISYLTMRG 53 (71)
Q Consensus 24 l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RG 53 (71)
..+-++|-.....||-.||..|-+||.-.|
T Consensus 97 ~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg 126 (330)
T PF03405_consen 97 DSPWGRWVGRWTAEENRHGDALRDYLYVSG 126 (330)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHcccccccccccHHHHHHHHHHhC
Confidence 346799999999999999999999997655
No 62
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=43.07 E-value=36 Score=23.05 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=37.4
Q ss_pred HhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15457 9 GRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53 (71)
Q Consensus 9 ~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RG 53 (71)
.+.-|++.+.. .+.+.+..|+......|.+|-.-|++|+...+
T Consensus 93 ~fQIMGfn~~~--~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 93 LFQIMGFNWKA--LGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 35568888776 59999999999999999999999999998765
No 63
>KOG1959|consensus
Probab=42.93 E-value=11 Score=31.67 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=34.4
Q ss_pred hhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccccc
Q psy15457 12 APGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIPS 68 (71)
Q Consensus 12 sma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~~~~~~~ 68 (71)
..|.|+..+.+=+|==..|-..-|.-.-....|||+|.|+|...-..+|-+++ +|+
T Consensus 275 ~~a~~~RtnHim~~MG~DFqY~~A~v~fknmDkLI~yVN~~qa~gs~vnv~YS-Tps 330 (996)
T KOG1959|consen 275 NQAAYYRTNHIMWPMGDDFQYENANVWFKNMDKLIKYVNERQADGSKVNVFYS-TPS 330 (996)
T ss_pred HhHhheecceEEEeccCCceehhhhHHHhhHHHHHHHhhhhhcCCceEEEEEc-ChH
Confidence 34555555443333123344445555666789999999998555555666777 775
No 64
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.42 E-value=53 Score=23.61 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=28.8
Q ss_pred hhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15457 13 PGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMR 52 (71)
Q Consensus 13 ma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~R 52 (71)
+..|-...-.=|..+.+|+++.|+-|+++|.++-+..++-
T Consensus 10 L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~ 49 (263)
T cd07678 10 LQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQF 49 (263)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443323466899999999999999999998654443
No 65
>COG0218 Predicted GTPase [General function prediction only]
Probab=41.84 E-value=16 Score=25.39 Aligned_cols=31 Identities=35% Similarity=0.614 Sum_probs=21.8
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHH-HHHHHhCC
Q psy15457 22 VNRPGFAKFFFTSASEEREHAIKFI-SYLTMRGN 54 (71)
Q Consensus 22 ~~l~Gfa~fF~~qs~eE~ehA~~l~-~yl~~RGg 54 (71)
+++||++ |-.-+.+++++=.+++ +|+..|..
T Consensus 75 VDlPGYG--yAkv~k~~~e~w~~~i~~YL~~R~~ 106 (200)
T COG0218 75 VDLPGYG--YAKVPKEVKEKWKKLIEEYLEKRAN 106 (200)
T ss_pred EeCCCcc--cccCCHHHHHHHHHHHHHHHhhchh
Confidence 7899876 3445556777777766 69988854
No 66
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=40.91 E-value=52 Score=22.96 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=24.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 24 RPGFAKFFFTSASEEREHAIKFISYLTM 51 (71)
Q Consensus 24 l~Gfa~fF~~qs~eE~ehA~~l~~yl~~ 51 (71)
|..+.+|+++.|+-|++.|.+|.+...+
T Consensus 21 Le~i~~F~reRa~iE~EYA~~L~~L~kq 48 (237)
T cd07657 21 LETMKKYMAKRAKSDREYASTLGSLANQ 48 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999987755
No 67
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=40.60 E-value=50 Score=23.69 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
+.+..=+-..+.||+.|=+..++.+.+||....
T Consensus 100 ~eLv~~Ms~LarEEL~HFeqVl~im~~RGi~l~ 132 (240)
T PF06175_consen 100 EELVDKMSRLAREELHHFEQVLEIMKKRGIPLG 132 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 445566778899999999999999999998765
No 68
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=39.01 E-value=20 Score=25.25 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=18.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q psy15457 23 NRPGFAKFFFTSASEEREHAIK 44 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~ 44 (71)
-++||..||...++++|+.+.-
T Consensus 81 ~l~GF~ef~~~L~~~~r~q~lG 102 (266)
T PF14331_consen 81 LLPGFDEFFSDLSEEEREQVLG 102 (266)
T ss_pred cccCHHHHHHhCCHHHHhCCcc
Confidence 7899999999999999876543
No 69
>PF13668 Ferritin_2: Ferritin-like domain
Probab=38.61 E-value=78 Score=19.41 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=34.5
Q ss_pred hhHHhhHhhhhhcccccc---ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 3 EDGDSHGRFAPGAHFSRD---CVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 3 El~aS~~YLsma~~f~~~---~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
|.-+...|...+.=+... ...=+....+|+.-+..|+.|+..+-+-+. |+++.
T Consensus 13 E~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~ 68 (137)
T PF13668_consen 13 EYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV 68 (137)
T ss_pred HHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC
Confidence 444555555555433110 013345789999999999999999998886 55543
No 70
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.81 E-value=53 Score=23.14 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYLTMRGNLT 56 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v 56 (71)
.-+.+||++.|.=|.+.|.+|.+.-.+-..+.
T Consensus 22 ~~i~~f~kERa~IEkeYakkL~~L~kKy~~kk 53 (253)
T cd07676 22 EKYIKFVKERTEIELSYAKQLRNLSKKYQPKK 53 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35899999999999999999998877765554
No 71
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.55 E-value=68 Score=22.89 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=28.1
Q ss_pred hhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 13 PGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTM 51 (71)
Q Consensus 13 ma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~ 51 (71)
+..|-+.+-.=|..+..|+++.|+-|+|.|.+|-+.-.+
T Consensus 10 L~~~~~~~i~lLedi~~F~reRa~IE~EYa~~L~kLakk 48 (264)
T cd07654 10 LQAKHQTECDLLEDIRTYSQKKAAIEREYGQALQKLASQ 48 (264)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444544332235679999999999999999999864443
No 72
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=35.83 E-value=85 Score=22.22 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYLTMRGNL 55 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~ 55 (71)
.-++.|+++.|.=|.++|..|.+.-..-++.
T Consensus 29 kel~~f~keRa~iEe~Yak~L~kLak~~~~~ 59 (269)
T cd07673 29 KELSDFIRERATIEEAYSRSMTKLAKSASNY 59 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 4578999999999999999999988765543
No 73
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=35.75 E-value=77 Score=19.02 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=23.7
Q ss_pred cCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15457 22 VNRP-GFAKFFFTSASEEREHAIKFISYLTMR 52 (71)
Q Consensus 22 ~~l~-Gfa~fF~~qs~eE~ehA~~l~~yl~~R 52 (71)
.++| ++.-+|..|-+||-++-+..++=+|+-
T Consensus 41 ~DmPe~l~~~~~~QideeV~~LKe~IdaLNK~ 72 (79)
T PF10398_consen 41 QDMPEHLNMAFLAQIDEEVEKLKEHIDALNKI 72 (79)
T ss_dssp S---TTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 889999999999999999999888763
No 74
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=35.68 E-value=1.1e+02 Score=18.90 Aligned_cols=44 Identities=14% Similarity=-0.092 Sum_probs=33.1
Q ss_pred hHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 4 DGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYL 49 (71)
Q Consensus 4 l~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl 49 (71)
-.+...|..+...++. .+-+..+.+|.....+|.+|+..+-+.+
T Consensus 94 ~~~~~~y~~~~~~A~~--~~D~~t~~~l~~~~~~e~~h~~~l~~~l 137 (153)
T cd00907 94 YEAIAALNEAIALCEE--VGDYVSRDLLEEILEDEEEHIDWLETQL 137 (153)
T ss_pred HHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777666654 3677899999999999999998776554
No 75
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=35.40 E-value=1.6e+02 Score=21.58 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=36.7
Q ss_pred chhHHhhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 2 GEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTM 51 (71)
Q Consensus 2 ~El~aS~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~ 51 (71)
-|+.++..|+.=++-|. + +++-..+.+-+-||..|-+.+-..++.
T Consensus 34 GElsaamqYl~Q~fn~r----~-~~~~dll~DI~TEEl~HlEmvat~I~~ 78 (277)
T COG3546 34 GELSAAMQYLFQGFNVR----D-AKYKDLLMDIGTEELSHLEMVATMINL 78 (277)
T ss_pred hHHHHHHHHHHhhcccC----c-hHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 38899999999877655 3 679999999999999999987665544
No 76
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.80 E-value=84 Score=22.42 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYLTMRGN 54 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg 54 (71)
.-+.+|+++.|.=|.+.|.+|.+...+-++
T Consensus 22 ~~~~~F~keRa~IE~eYakkL~~L~Kky~~ 51 (252)
T cd07675 22 ERYAKFVKERLEIEQNYAKQLRNLVKKYCP 51 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 458999999999999999999987776443
No 77
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=34.38 E-value=34 Score=21.05 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhCCccc
Q psy15457 40 EHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 40 ehA~~l~~yl~~RGg~v~ 57 (71)
.-|..|++|+..+|..+.
T Consensus 11 r~AqaF~DYl~sqgI~~~ 28 (101)
T PF12122_consen 11 RAAQAFIDYLASQGIELQ 28 (101)
T ss_dssp HHHHHHHHHHHHTT--EE
T ss_pred HHHHHHHHHHHHCCCeEE
Confidence 358899999999997766
No 78
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=33.81 E-value=1.6e+02 Score=20.44 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=33.1
Q ss_pred HhhHhhhhhccccccccCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 6 DSHGRFAPGAHFSRDCVNRP---------GFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 6 aS~~YLsma~~f~~~~~~l~---------Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
..++.++||-||.-. .++. ....+|+..++-+.+--+.+-+ ....|..+.
T Consensus 165 ~~DTL~QmgRwFGYR-~gY~dl~Ri~~~~~l~~~f~~i~~~~e~lr~~i~~-~~~~~~tp~ 223 (239)
T PF10593_consen 165 QYDTLMQMGRWFGYR-PGYEDLCRIYMPEELYDWFRHIAEAEEELREEIKE-MANNGLTPK 223 (239)
T ss_pred hHHHHHHHhhcccCC-cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHH
Confidence 468999999999943 3432 4578888888777666555543 334455544
No 79
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=33.61 E-value=47 Score=18.28 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=12.3
Q ss_pred HHHHHHHhCCccccccc
Q psy15457 45 FISYLTMRGNLTDYHHH 61 (71)
Q Consensus 45 l~~yl~~RGg~v~~~~~ 61 (71)
-++-++..||+|..|-|
T Consensus 39 ~~q~I~r~GGkIvsItp 55 (56)
T PF01383_consen 39 EMQRINRQGGKIVSITP 55 (56)
T ss_dssp HHHHHHHCT-EEEEEEE
T ss_pred HHHHHHHCCCEEEEEEe
Confidence 35677899999997765
No 80
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=33.33 E-value=82 Score=22.23 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTM 51 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~ 51 (71)
=|..+.+|++..|.-|++.|.+|.+.-.+
T Consensus 20 lLE~i~~f~~eRakiEkEYA~~L~~L~kq 48 (234)
T cd07686 20 LLETVKKFMALRVKSDKEYASTLQNLCNQ 48 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999988775
No 81
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=32.73 E-value=95 Score=21.58 Aligned_cols=37 Identities=16% Similarity=0.007 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc
Q psy15457 26 GFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHV 62 (71)
Q Consensus 26 Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~ 62 (71)
.+-+=+-..+.||..|-....+.+..||.+...+-++
T Consensus 59 ~lv~km~~larEEL~HFeqV~eilq~RnI~~~~i~as 95 (203)
T COG4445 59 DLVDKMVLLAREELHHFEQVLEILQARNIPYVPIPAS 95 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc
Confidence 3555667789999999999999999999998866543
No 82
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.71 E-value=1e+02 Score=21.56 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYLTMRGN 54 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg 54 (71)
.-++.|+++.|.=|.++|..|.+.-..-++
T Consensus 22 kel~~flkeRa~IEe~Yak~L~klak~~~~ 51 (261)
T cd07674 22 KELADFVRERAAIEETYSKSMSKLSKMASN 51 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 458999999999999999999998855444
No 83
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=29.50 E-value=64 Score=22.03 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhCCcccccccc
Q psy15457 37 EEREHAIKFISYLTMRGNLTDYHHHV 62 (71)
Q Consensus 37 eE~ehA~~l~~yl~~RGg~v~~~~~~ 62 (71)
++.+-+..+.+|+++||.++.+++|-
T Consensus 41 p~~~~~~~l~~yf~~r~y~v~~~d~~ 66 (173)
T PF12046_consen 41 PPDEVLEQLKAYFEQRNYRVAEGDAE 66 (173)
T ss_pred CHHHHHHHHHHHHHhcCceecccCcc
Confidence 36788999999999999999975543
No 84
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=28.95 E-value=71 Score=18.91 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=30.1
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhCC--ccccccccc
Q psy15457 27 FAKFFFTSAS--EEREHAIKFISYLTMRGN--LTDYHHHVL 63 (71)
Q Consensus 27 fa~fF~~qs~--eE~ehA~~l~~yl~~RGg--~v~~~~~~~ 63 (71)
+..|+.+..+ ..|+.|.++-+-|.+.|. +|.|.|+|.
T Consensus 35 lVdWL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV~~~h~F~ 75 (84)
T cd04438 35 LVDWLLSHVEGLTDRREARKYASSLLKLGYIRHTVNKITFS 75 (84)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCCcEEecCCCcccc
Confidence 6788888664 688999999999999887 666888874
No 85
>PRK07942 DNA polymerase III subunit epsilon; Provisional
Probab=28.18 E-value=2e+02 Score=19.64 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=38.5
Q ss_pred hhHhhhhhccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc
Q psy15457 7 SHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVL 63 (71)
Q Consensus 7 S~~YLsma~~f~~~~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~~ 63 (71)
..+++.+..-+.+ .+-.+.......|..-..+.+..+-+|+..+|....++.+--
T Consensus 170 a~l~~~l~~~~~~--l~~~~~~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 224 (232)
T PRK07942 170 ARVAWALARRFPE--LAALSPAELHELQAVWYAEQAASFQAYLRRKGRPAAVVDGAW 224 (232)
T ss_pred HHHHHHHHHHHHH--hhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCC
Confidence 3444555443332 355567778888888888999999999999987766666543
No 86
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=28.04 E-value=46 Score=23.27 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=28.4
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q psy15457 22 VNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLT 56 (71)
Q Consensus 22 ~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v 56 (71)
.-+..+..||++.|.=|.++|.+|-+...+-.+.+
T Consensus 19 ~~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~ 53 (258)
T cd07655 19 KLCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLI 53 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34567899999999999999999999887644433
No 87
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=27.99 E-value=1e+02 Score=22.04 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=28.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
....+..||+..|+=|.++|.+|.+.-.+-++.+.
T Consensus 20 ~C~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e 54 (258)
T cd07681 20 LCNDLVSCFQERAKIEKGYAQQLSDWARKWRGIVE 54 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Confidence 34568999999999999999999998876555443
No 88
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=26.90 E-value=42 Score=22.71 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=20.1
Q ss_pred hhhhccccccccCChhHHHHHHHHHHHH
Q psy15457 11 FAPGAHFSRDCVNRPGFAKFFFTSASEE 38 (71)
Q Consensus 11 Lsma~~f~~~~~~l~Gfa~fF~~qs~eE 38 (71)
=+....|+. .+|||+.-||..|-+|
T Consensus 87 EA~~~~~dK---eipGFgE~fR~~S~~~ 111 (169)
T COG0521 87 EATRPLFDK---EIPGFGELFRRLSLEE 111 (169)
T ss_pred HHHHHHHhc---cCCcHHHHHHHhhhhc
Confidence 345556665 8999999999999888
No 89
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=26.74 E-value=1.3e+02 Score=20.84 Aligned_cols=29 Identities=14% Similarity=-0.091 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTM 51 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~ 51 (71)
..+.+..||++.|.-|.+.|..|.+.-..
T Consensus 20 ~ckel~~f~kERa~IE~~YAK~L~kLa~k 48 (239)
T cd07658 20 FCKELATVLQERAELELNYAKGLSKLSGK 48 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999988754
No 90
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.49 E-value=1.4e+02 Score=20.49 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYLTMRG 53 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl~~RG 53 (71)
+-++.||++.|.=|.++|..|.+.....+
T Consensus 22 ~el~~~~kERa~IE~~Yak~L~kLakk~~ 50 (228)
T cd07650 22 TELADWLQERRRLERQYVQGLRKLARRNE 50 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34899999999999999999999887653
No 91
>KOG3076|consensus
Probab=26.45 E-value=41 Score=23.64 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccc
Q psy15457 24 RPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLS 64 (71)
Q Consensus 24 l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~~~ 64 (71)
+-=+|.|++..|.+ ++.+-++++.|+||.++
T Consensus 90 ~v~lAG~M~iLs~~----------fl~~~~~~iiNIHPaLl 120 (206)
T KOG3076|consen 90 LVCLAGYMRILSGE----------FLSQLPKRIINIHPALL 120 (206)
T ss_pred EEEehhhHHHcCHH----------HHhhcccceEecccccc
Confidence 33356677777643 67788888999999876
No 92
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=26.14 E-value=1.6e+02 Score=20.55 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTM 51 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~ 51 (71)
...-+..|+++.|.=|.+.|.+|.+.-.+
T Consensus 20 ~~~el~~f~kERA~IE~~YaK~L~kLskk 48 (240)
T cd07672 20 NCKEFEDFLKERASIEEKYGKELLNLSKK 48 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34558999999999999999999998875
No 93
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=26.11 E-value=76 Score=19.41 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhCCccc-ccccc
Q psy15457 39 REHAIKFISYLTMRGNLTD-YHHHV 62 (71)
Q Consensus 39 ~ehA~~l~~yl~~RGg~v~-~~~~~ 62 (71)
++.-..+..+|.+||.+|. +..++
T Consensus 38 ~eri~~L~~~L~kRgv~v~L~~~~S 62 (86)
T PF09153_consen 38 RERISRLIEFLKKRGVSVSLDEEPS 62 (86)
T ss_dssp H-HHHHHHHHHHHTT------B---
T ss_pred HHHHHHHHHHHHhcCceeEEeecCC
Confidence 3456678899999999887 55554
No 94
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=26.01 E-value=1.5e+02 Score=20.70 Aligned_cols=34 Identities=12% Similarity=0.152 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 24 RPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 24 l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
..-+..||+..++=|.++|.+|.+.-.+-++...
T Consensus 21 c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e 54 (242)
T cd07671 21 CKDVEELLKQRAQAEERYGKELVQIARKAGGQTE 54 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 3458899999999999999999998887766443
No 95
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=25.86 E-value=42 Score=21.88 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=18.6
Q ss_pred hhccccccccCChhHHHHHHHHHHHH
Q psy15457 13 PGAHFSRDCVNRPGFAKFFFTSASEE 38 (71)
Q Consensus 13 ma~~f~~~~~~l~Gfa~fF~~qs~eE 38 (71)
++-|-.+++++..||..|++..=+.+
T Consensus 40 ~~~~~~~~~Id~egF~~Fm~~yLe~d 65 (138)
T PF14513_consen 40 LAKYNPEEPIDYEGFKLFMKTYLEVD 65 (138)
T ss_dssp GGGGEETTEE-HHHHHHHHHHHTT-S
T ss_pred ccccCCCCCcCHHHHHHHHHHHHcCC
Confidence 56676777899999999998765443
No 96
>PF12834 Phage_int_SAM_2: Phage integrase, N-terminal; InterPro: IPR024457 Phage integrase proteins cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. This entry represents the N-terminal predicted alpha-helical domain found in a family of putative prophage DNA-binding integrases.
Probab=25.07 E-value=1.3e+02 Score=17.83 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhCCcccccccc
Q psy15457 39 REHAIKFISYLTMRGNLTDYHHHV 62 (71)
Q Consensus 39 ~ehA~~l~~yl~~RGg~v~~~~~~ 62 (71)
..-+.+++++|.+.|.++.++.++
T Consensus 26 ~~~~~~~~~~L~~~g~~i~~~~~l 49 (91)
T PF12834_consen 26 MRILKRFARFLRELGFQIRSIRNL 49 (91)
T ss_pred HHHHHHHHHHHHHCCCCcCCHHHh
Confidence 355667777777777777665544
No 97
>PF10704 DUF2508: Protein of unknown function (DUF2508); InterPro: IPR019644 This entry represents a protein family of unknown function that is conserved in the firmicutes.
Probab=24.45 E-value=91 Score=17.75 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy15457 33 TSASEEREHAIKFISYLTM 51 (71)
Q Consensus 33 ~qs~eE~ehA~~l~~yl~~ 51 (71)
.++.++|++|..+++...+
T Consensus 22 ~~ak~ew~~a~~~~~~~~D 40 (71)
T PF10704_consen 22 EQAKQEWENARRLFENVVD 40 (71)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 5788999999999987766
No 98
>PF13041 PPR_2: PPR repeat family
Probab=24.35 E-value=83 Score=15.78 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhCCccc
Q psy15457 37 EEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 37 eE~ehA~~l~~yl~~RGg~v~ 57 (71)
...+.|.++++-+.++|.++.
T Consensus 17 ~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 17 GKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred cCHHHHHHHHHHHHHcCCCCC
Confidence 456889999999999998877
No 99
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=23.61 E-value=1.9e+02 Score=23.90 Aligned_cols=58 Identities=12% Similarity=-0.052 Sum_probs=43.3
Q ss_pred HHhhHhhhhhcccccc--ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccc
Q psy15457 5 GDSHGRFAPGAHFSRD--CVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVL 63 (71)
Q Consensus 5 ~aS~~YLsma~~f~~~--~~~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg~v~~~~~~~ 63 (71)
..|+.||+| +|.+.- +..=..++.-|...|++-.++-.++++=++...|++.|+--.+
T Consensus 657 RgSHfylA~-YWA~aLA~Q~~d~~L~~~F~~iA~~L~~nE~~I~~El~~~QG~~~digGYY 716 (741)
T TIGR00178 657 RGSHFYLAL-YWAQELAAQTEDKELQAQFASVAKALTKNETKIVAELAAAQGKPVDIGGYY 716 (741)
T ss_pred CcchHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCCc
Confidence 358889885 454310 1133468899999999999999999999999999998776554
No 100
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=23.16 E-value=1.3e+02 Score=17.83 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCC
Q psy15457 34 SASEEREHAIKFISYLTMRGN 54 (71)
Q Consensus 34 qs~eE~ehA~~l~~yl~~RGg 54 (71)
.++++++.-.+|++|+.+|+-
T Consensus 78 ~~~~~~~~~~~l~~Yl~~k~r 98 (119)
T PF07744_consen 78 DSNSDRRPFQKLVDYLKSKQR 98 (119)
T ss_dssp HHHHHHHHHHHTHHHHHHHTE
T ss_pred cCHHHHHHHHHHHHHHhhCCE
Confidence 566777888899999999875
No 101
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.30 E-value=93 Score=13.78 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhCCcc
Q psy15457 39 REHAIKFISYLTMRGNLT 56 (71)
Q Consensus 39 ~ehA~~l~~yl~~RGg~v 56 (71)
.+-|..+++.+.++|.++
T Consensus 17 ~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 17 PDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 344888888888877543
No 102
>PF02025 IL5: Interleukin 5; InterPro: IPR000186 Interleukin-5 (IL5), also known as eosinophil differentiation factor (EDF), is a lineage-specific cytokine for eosinophilpoiesis [, ]. It regulates eosinophil growth and activation [], and thus plays an important role in diseases associated with increased levels of eosinophils, including asthma []. IL5 has a similar overall fold to other cytokines (e.g., IL2, IL4 and GCSF) [], but while these exist as monomeric structures, IL5 is a homodimer. The fold contains an anti-parallel 4-alpha-helix bundle with a left handed twist, connected by a 2-stranded anti-parallel beta-sheet [, ]. The monomers are held together by 2 interchain disulphide bonds [].; GO: 0005137 interleukin-5 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3QT2_D 1HUL_B 3B5K_B.
Probab=22.25 E-value=22 Score=22.66 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=9.9
Q ss_pred ChhHHHHHHHHHH
Q psy15457 24 RPGFAKFFFTSAS 36 (71)
Q Consensus 24 l~Gfa~fF~~qs~ 36 (71)
-..+.++|+..|.
T Consensus 61 ~~~v~~lFQNls~ 73 (113)
T PF02025_consen 61 GDAVEKLFQNLSL 73 (113)
T ss_dssp SSTHHHHHHHHHH
T ss_pred hhhHHHHHHhHHH
Confidence 4678899988763
No 103
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=22.20 E-value=54 Score=22.91 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=13.4
Q ss_pred HHHHhCCcccccccccc
Q psy15457 48 YLTMRGNLTDYHHHVLS 64 (71)
Q Consensus 48 yl~~RGg~v~~~~~~~~ 64 (71)
++..-.+++.|+||+++
T Consensus 96 fl~~~~grIlNIHPSLL 112 (200)
T COG0299 96 FLSRFEGRILNIHPSLL 112 (200)
T ss_pred HHHHhhcceEecCcccc
Confidence 45555679999999987
No 104
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=21.81 E-value=1.1e+02 Score=23.29 Aligned_cols=33 Identities=6% Similarity=-0.224 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCccc-ccccccccccc
Q psy15457 35 ASEEREHAIKFISYLTMRGNLTD-YHHHVLSIIPS 68 (71)
Q Consensus 35 s~eE~ehA~~l~~yl~~RGg~v~-~~~~~~~~~~~ 68 (71)
++.+-.-..+++++.|+-|.++. |++|..+ .++
T Consensus 44 ~~~~~~~~~ell~~Anklg~~vivDvnPsil-~~l 77 (360)
T COG3589 44 AELYFHRFKELLKEANKLGLRVIVDVNPSIL-KEL 77 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEcCHHHH-hhc
Confidence 44566778899999999999988 9999865 553
No 105
>PHA01794 hypothetical protein
Probab=21.78 E-value=1.6e+02 Score=19.35 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15457 28 AKFFFTSASEEREHAIKFISYLTMRG 53 (71)
Q Consensus 28 a~fF~~qs~eE~ehA~~l~~yl~~RG 53 (71)
+.||+.....-.+..++-.+|+..|.
T Consensus 87 SGFF~~ki~kyien~EK~~~yl~~k~ 112 (134)
T PHA01794 87 SGFFRAKIKKYIENMEKSARYLKAKD 112 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhccC
Confidence 56899999999999999999998764
No 106
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=21.73 E-value=1.7e+02 Score=20.51 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYLTMRG 53 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl~~RG 53 (71)
.....|......||..|+..+.++++.-|
T Consensus 112 ~~~~~~~~~~i~DE~rH~~mf~~~~~~~~ 140 (304)
T PF11583_consen 112 DDAKRYALTEIADEARHSLMFARAINRTG 140 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888899999999999999999877
No 107
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=21.57 E-value=2.1e+02 Score=20.36 Aligned_cols=32 Identities=6% Similarity=-0.020 Sum_probs=26.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGN 54 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg 54 (71)
-+.-+..|+++.|.=|.+.|.+|.+.-.+-.+
T Consensus 20 ~~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~ 51 (258)
T cd07680 20 LCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQ 51 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34568999999999999999999998876443
No 108
>COG3512 CRISPR-associated protein, Cas2 homolog [Defense mechanisms]
Probab=21.23 E-value=1.2e+02 Score=19.34 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccc
Q psy15457 34 SASEEREHAIKFISYLTMRGNLTD 57 (71)
Q Consensus 34 qs~eE~ehA~~l~~yl~~RGg~v~ 57 (71)
-+.+||.-|.+|.+++.+-|....
T Consensus 18 ~t~~erKaa~kFR~fLlk~Gy~Ml 41 (116)
T COG3512 18 DTAAERKAANKFRQFLLKDGYQML 41 (116)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHH
Confidence 456899999999999999886543
No 109
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=21.21 E-value=1.9e+02 Score=20.98 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISY 48 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~y 48 (71)
.-+..||++.|+-|+|.+.+|-+.
T Consensus 22 qDLqdFyRrRAeIE~EYS~~L~KL 45 (253)
T cd07684 22 QDLQEFFRRKAEIELEYSRSLEKL 45 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999988753
No 110
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.08 E-value=1.9e+02 Score=21.09 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYL 49 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl 49 (71)
.-+..||++.|+-|+|.+.+|-+.-
T Consensus 22 qDLqdFyRrRAeIE~EYS~~L~KLA 46 (263)
T cd07682 22 QDLQDFFRKKAEIEMDYSRNLEKLA 46 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999887643
No 111
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.53 E-value=2.4e+02 Score=19.61 Aligned_cols=32 Identities=16% Similarity=0.030 Sum_probs=26.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy15457 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGN 54 (71)
Q Consensus 23 ~l~Gfa~fF~~qs~eE~ehA~~l~~yl~~RGg 54 (71)
....+..||++.|.=|.+.|.+|.+.-..-++
T Consensus 20 ~~~el~~fl~ERa~IEe~Yak~L~klak~~~~ 51 (233)
T cd07649 20 MQKEMAEFIRERIKIEEEYAKNLSKLSQSSLA 51 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 44568999999999999999999998765444
No 112
>COG3461 Uncharacterized conserved protein [Function unknown]
Probab=20.43 E-value=2e+02 Score=17.96 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15457 25 PGFAKFFFTSASEEREHAIKFISYLTMR 52 (71)
Q Consensus 25 ~Gfa~fF~~qs~eE~ehA~~l~~yl~~R 52 (71)
+.+.+-+..--++|.+||-.++.++...
T Consensus 46 ~~~r~ImehnrdeE~eHa~mlLEwlrR~ 73 (103)
T COG3461 46 EDLRAIMEHNRDEEKEHAAMLLEWLRRH 73 (103)
T ss_pred HhHHHHHHHcccHHHHHHHHHHHHHHHc
Confidence 3566777777889999999999998543
Done!