RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15457
(71 letters)
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 191
Score = 69.3 bits (170), Expect = 7e-17
Identities = 34/54 (62%), Positives = 41/54 (75%)
Query: 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIP 67
GAHFS+D VNRPGFA+ FF +ASEEREHA+K I YL MRG LT+ +L + P
Sbjct: 43 GAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYLLMRGELTNDVSSLLQVRP 96
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1
PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Length = 173
Score = 60.8 bits (148), Expect = 1e-13
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
++F+RD V FAKFF + EE+EHA K I Y RG
Sbjct: 35 ASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRG 74
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme
protein, iron storage, iron, metal-binding,
oxidoreductase, phosphorylation; 1.5A {Homo sapiens}
PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A
2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Length = 183
Score = 59.2 bits (144), Expect = 4e-13
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 12 APGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ +F RD V FAK+F + EEREHA K + RG
Sbjct: 37 SMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRG 78
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva
pertusa}
Length = 204
Score = 59.7 bits (145), Expect = 5e-13
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
++F+RD V PGFAKFF ++ EEREHA + Y T RG
Sbjct: 62 HSYFARDNVGLPGFAKFFKEASDEEREHAHMLMDYQTKRG 101
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage,
CAGE-like protein, plant, iron, metal-binding,
oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Length = 212
Score = 59.3 bits (144), Expect = 7e-13
Identities = 21/40 (52%), Positives = 24/40 (60%)
Query: 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
A+F RD V G AKFF S+ EEREHA K + Y RG
Sbjct: 67 FAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRG 106
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron,
metal-binding, oxidoreductase; 1.35A {Rana catesbeiana}
PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A
3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Length = 176
Score = 57.7 bits (140), Expect = 1e-12
Identities = 19/42 (45%), Positives = 23/42 (54%)
Query: 12 APGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ A F RD V A+FF + EEREHA KF+ Y RG
Sbjct: 33 SMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRG 74
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin,
iron storage, metal-binding; 1.15A {Equus caballus}
PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A
2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X
2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Length = 174
Score = 56.6 bits (137), Expect = 5e-12
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
G +F RD V G FF A ++ + A + + RG
Sbjct: 34 GFYFDRDDVALEGVCHFFRQLAQQKMQGAERLLKMQNQRG 73
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase;
2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Length = 189
Score = 56.1 bits (136), Expect = 9e-12
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+F + + P AK F++ A EER HA+ + +L R
Sbjct: 34 VYFDSE--DLPQLAKHFYSQAVEERNHAMMLVQHLLDRD 70
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 55.3 bits (134), Expect = 1e-11
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
F ++ + G A + ++EEREH + F+ + R
Sbjct: 28 IWFDQN--DWEGMAAYMLAESAEEREHGLGFVDFANKRN 64
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding
protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Length = 191
Score = 55.6 bits (134), Expect = 1e-11
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
G +F RD V G + FF A E+RE + + RG
Sbjct: 35 GFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRG 74
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia
coli} SCOP: a.25.1.1
Length = 165
Score = 54.2 bits (131), Expect = 3e-11
Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
A S G A F A EE H + YLT G
Sbjct: 29 AWCSYH--TFEGAAAFLRRHAQEEMTHMQRLFDYLTDTG 65
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A
{Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 54.2 bits (131), Expect = 3e-11
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ + + G F F ASEE +HA K I+YL
Sbjct: 29 SWCYEN--SLDGAGAFLFAHASEESDHAKKLITYLNETD 65
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A
{Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A
3egm_A
Length = 181
Score = 54.3 bits (131), Expect = 3e-11
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ + G F F A+EE EHA K I +L
Sbjct: 43 SWCYTH--SLDGAGLFLFDHAAEEYEHAKKLIIFLNENN 79
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores,
archaeon, entry channels, thermostability,
hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus
furiosus} PDB: 2jd7_0 2jd8_0 2x17_0
Length = 174
Score = 53.8 bits (130), Expect = 5e-11
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
A+F + + GFA + A EE HA++F +Y+ R
Sbjct: 29 AYF--EDLGLEGFANWMKAQAEEEIGHALRFYNYIYDRN 65
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu
initiative, PSI, joint center for structural genomics,
META protein; 2.00A {Thermotoga maritima} SCOP:
a.25.1.1 PDB: 1z4a_A*
Length = 176
Score = 53.8 bits (130), Expect = 6e-11
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+F + GFA + A EE HA+KF Y+ RG
Sbjct: 43 TYFDAE--GFKGFAHWMKKQAQEELTHAMKFYEYIYERG 79
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal
binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1
PDB: 1sq3_A 3kx9_A
Length = 173
Score = 53.4 bits (129), Expect = 8e-11
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
++F D + GF+ + EE HA+K +++ RG
Sbjct: 31 SYF--DSIGLKGFSNWMRVQWQEELMHAMKMFDFVSERG 67
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 212
Score = 53.1 bits (127), Expect = 1e-10
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHH 60
A+F+ NR GF+K F + E I I ++T RG+ ++
Sbjct: 59 AAYFNNYQTNRAGFSKLFKKLSDEAWSKTIDIIKHVTKRGDKMNFDQ 105
>3qz3_A Ferritin; structural genomics, the center for structural genomics
of I diseases, csgid, cytoplasmic, oxidoreductase;
2.10A {Vibrio cholerae o1 biovar el tor}
Length = 184
Score = 52.7 bits (127), Expect = 2e-10
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
A + G A+F A EE +H + +Y++ G
Sbjct: 38 AWC--EDKGFDGAAEFLRAHAVEEMQHMQRLFTYVSETG 74
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding
protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP:
a.25.1.1 PDB: 2fl0_A* 1sof_A*
Length = 155
Score = 29.5 bits (66), Expect = 0.046
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 8 HGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIP 67
H R + K + + +E +HA K I + L + +I
Sbjct: 28 HARMYEDWGLEK-------LGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLIG 80
Query: 68 STI 70
Sbjct: 81 EHT 83
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics,
seattle structural genomics center for infectious
disease; HET: HEM; 1.81A {Brucella melitensis biovar
ABORTUS2308}
Length = 182
Score = 28.9 bits (64), Expect = 0.085
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 8 HGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIP 67
H R ++R AK + EE HA K I + + I
Sbjct: 49 HYRLLNDWGYTR-------LAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSPLRIG 101
Query: 68 STI 70
+
Sbjct: 102 QNV 104
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB
structural genomics consort TBSGC, metal binding
protein; HET: HEM; 2.11A {Mycobacterium tuberculosis}
PDB: 2wtl_A* 3bkn_A*
Length = 174
Score = 28.8 bits (64), Expect = 0.097
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 8 HGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIP 67
H + F+ A + +E HA + + + L +Y I
Sbjct: 30 HSKMQDNWGFTE-------LAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIG 82
Query: 68 STI 70
T+
Sbjct: 83 QTL 85
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose
binding protein, MBP fold, ABC transporter fold,
thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus
furiosus} SCOP: c.94.1.1
Length = 381
Score = 28.5 bits (64), Expect = 0.12
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 30 FFFTSASEEREHAIKFISYLT 50
+F + + ++ A KF +LT
Sbjct: 268 IYFAAGIKNKDAAWKFAKWLT 288
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding
protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP:
a.25.1.1
Length = 161
Score = 28.4 bits (63), Expect = 0.15
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 7/54 (12%)
Query: 8 HGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHH 61
H R ++ AK + EE HA K I+ + +
Sbjct: 28 HFRLQEDWGLAK-------MAKKSREESIEEMGHADKIIARILFLEGHPNLQKL 74
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A
{Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A*
3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A*
3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Length = 158
Score = 28.0 bits (62), Expect = 0.18
Identities = 6/49 (12%), Positives = 15/49 (30%)
Query: 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIPSTIM 71
+ + +E +HA ++I + L + I +
Sbjct: 36 GLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVE 84
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron
storage, iron homeost iron release, iron mobilization;
1.55A {Pseudomonas aeruginosa} PDB: 3r2h_A 3r2l_A
3r2m_A 3r2o_A 3r2r_A 3r2s_A
Length = 154
Score = 28.0 bits (62), Expect = 0.19
Identities = 4/39 (10%), Positives = 10/39 (25%)
Query: 25 PGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVL 63
+ EE +HA + + + +
Sbjct: 38 SKLYERLNHEMEEETQHADALLRRILLLEGTPRMRPDDI 76
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein,
thermoph protein, periplasmic binding protein, sugar
binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Length = 386
Score = 27.0 bits (60), Expect = 0.37
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 30 FFFTSASEEREHAIKFISYLT 50
+ S+ + A+ F L
Sbjct: 271 VVVNAYSKNKTQAVNFAKTLV 291
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic
binding protein, pectin degradation, trigalacturonic
acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB:
2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Length = 408
Score = 27.0 bits (60), Expect = 0.40
Identities = 6/50 (12%), Positives = 13/50 (26%), Gaps = 12/50 (24%)
Query: 1 MGEDGDSHGRFAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLT 50
M G F A +++ + + I++L
Sbjct: 271 MLPGAKDAGLFFKPAQM------------LSIGKSTKHPQESAMLINFLL 308
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC;
1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A*
2zyn_A* 2dfz_A*
Length = 397
Score = 27.0 bits (60), Expect = 0.44
Identities = 4/21 (19%), Positives = 14/21 (66%)
Query: 30 FFFTSASEEREHAIKFISYLT 50
++ ++ S+ ++A + + +LT
Sbjct: 284 WYLSAYSKYPKYATELMQFLT 304
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle,
thermoacidophIle, hyperthermophIle, thermophIle; HET:
MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP:
c.94.1.1 PDB: 1urg_A* 1urd_A*
Length = 402
Score = 26.6 bits (59), Expect = 0.56
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 26 GFAKFFFTSASEEREHAIKFISYLT 50
G F S+ + + LT
Sbjct: 286 GVITAFVNKESKTQAADWSLVQALT 310
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM
Fe-coproporphyrin III cofactor, iron storage-electron
complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans}
SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Length = 179
Score = 26.5 bits (58), Expect = 0.58
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHH 61
+ A A +E HA F + G
Sbjct: 41 DYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKE 79
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity,
heme, metal binding protein; HET: HEM; 2.80A
{Rhodobacter sphaeroides}
Length = 161
Score = 26.0 bits (57), Expect = 0.94
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHH 60
A + EE HA K I + G +
Sbjct: 36 GFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQR 73
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 25.9 bits (56), Expect = 1.0
Identities = 6/46 (13%), Positives = 12/46 (26%)
Query: 25 PGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIPSTI 70
A+ F +A+ E H + + + S
Sbjct: 60 EQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAYSCD 105
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 25.8 bits (56), Expect = 1.0
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 16 HFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTD 57
+ P AK F A E HA L G +
Sbjct: 29 AEKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPE 70
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein,
sugar binding protein, virulence, alpha-glucan, sugar
transport; HET: GLC; 2.00A {Streptococcus pneumoniae}
PDB: 2xd2_A*
Length = 416
Score = 25.5 bits (56), Expect = 1.4
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 30 FFFTSASEEREHAIKFISYLT 50
+ A + E + KF+ +L
Sbjct: 302 WVIPQAVKNLEASQKFVDFLV 322
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein,
periplasmic-binding protein, maltose, SUG binding
protein; 2.20A {Xanthomonas axonopodis PV}
Length = 458
Score = 25.5 bits (56), Expect = 1.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 33 TSASEEREHAIKFISYLT 50
+S+ ++ + K I YL+
Sbjct: 308 FKSSQHKDASWKLIEYLS 325
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for
infectious DI peroxidase, oxidoreductase; 1.90A
{Burkholderia pseudomallei}
Length = 144
Score = 25.2 bits (55), Expect = 1.5
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 25 PGFAKFFFTSASEEREHAIKFISYLTMRGN 54
A F ++A E HA + YL G+
Sbjct: 44 NDIAALFRSTAEGETGHAHGHLEYLEAVGD 73
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein;
solute-binding protein, blood group antigen,
carbohydrate transport; HET: A2G GAL FUC; 2.35A
{Streptococcus pneumoniae}
Length = 430
Score = 25.5 bits (56), Expect = 1.6
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 30 FFFTSASEEREHAIKFISYLT 50
+ +++ A++F+ Y+T
Sbjct: 313 ISSKMSEAKQKLALEFLKYMT 333
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC
transporter extracellular solute bindi protein,
D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A*
3oo7_A 3oo9_A 3ooa_A
Length = 415
Score = 25.2 bits (55), Expect = 1.7
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 30 FFFTSASEEREHAIKFISYLT 50
F + A K + Y+
Sbjct: 303 FILPKKGKNAAAAKKVLQYIG 323
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter,
acarbose-binding protein, transport protein; 1.35A
{Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Length = 412
Score = 25.1 bits (55), Expect = 2.0
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 33 TSASEEREHAIKFISYLT 50
+ S+ + + F+ Y++
Sbjct: 303 YAGSKNLDASYAFVKYMS 320
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON,
ferritin-like superfamily, metal transport; 1.20A
{Cyanophora paradoxa} PDB: 3qhc_A 3sid_A
Length = 179
Score = 25.0 bits (54), Expect = 2.2
Identities = 10/47 (21%), Positives = 12/47 (25%)
Query: 25 PGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIPSTIM 71
P F A EE HA + + STI
Sbjct: 57 PEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIE 103
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus
tokodaii strain 7, FOU bundle, domain swapping, metal
binding site plasticity; 1.70A {Sulfolobus tokodaii}
SCOP: a.25.1.1
Length = 144
Score = 24.8 bits (54), Expect = 2.6
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 25 PGFAKFFFTSASEEREHAIKFISYLTMRG 53
P A + A E HA + ++ G
Sbjct: 40 PEIAGLLRSIAEGETAHAFGHLDFIRQGG 68
>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus}
SCOP: d.15.1.8 PDB: 2d5g_A
Length = 84
Score = 24.1 bits (52), Expect = 2.7
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 19 RDCVNRPGFAKFFFTSASEERE 40
++ + + G +++F S+E +
Sbjct: 33 KELLTKKGSYRYYFKKVSDEFD 54
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein;
ZP_00055496.1, COG1633: uncharacterized conSer protein;
HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum}
SCOP: a.25.1.8
Length = 167
Score = 24.7 bits (53), Expect = 3.0
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 23 NRPGFAKFFFTSASEEREHAIKFI 46
N A F A H +
Sbjct: 35 NNLDTATVFRDMARFSTLHGDEIK 58
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 24.7 bits (53), Expect = 3.1
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 25 PGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIPSTI 70
+ F +A +EREHA + +L G+L II T
Sbjct: 40 VQISDIFAETADQEREHAKRLFKFLE-GGDLEIVAAFPAGIIADTH 84
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 24.4 bits (54), Expect = 3.1
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 25 PGFAKFFFT-SASEEREHAIKFISY 48
G FF+ S SE E A K
Sbjct: 105 GGEYVIFFSNSGSEANETAFKIARQ 129
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural
genomics, PSI-2, structure initiative; HET: CIT; 1.25A
{Bacillus subtilis subsp}
Length = 341
Score = 24.7 bits (54), Expect = 3.3
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 6 DSHGRFAPGAHFSRDCVNRPGFAK 29
D H ++S G A+
Sbjct: 19 DIHANMMDYDYYSDKETADFGLAR 42
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 24.7 bits (54), Expect = 3.4
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 36 SEEREHAIKFISYLTMRGN-LTDYHHHVLSIIPST 69
E+R+ A+K + G ++ V++ + +
Sbjct: 27 KEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTD 61
>3pz7_A Dixin; DIX domain, oligomerization, signaling protein; 2.44A
{Homo sapiens}
Length = 91
Score = 23.8 bits (51), Expect = 4.1
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 19 RDCVNRPGFAKFFFTSASEE 38
+ ++R G ++ F + E
Sbjct: 39 KAAIDREGNHRYHFKAMDPE 58
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
2.43A {Klebsiella pneumoniae subsp}
Length = 339
Score = 23.9 bits (52), Expect = 4.8
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 6 DSHGRFAPGAHFSRDCVNRPGFAK 29
D H ++ + G +
Sbjct: 16 DLHSNMMDFDYYKDAATEKFGLVR 39
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI,
protein structure initiative; 2.20A {Nitrosomonas
europaea atcc 19718} SCOP: a.25.1.5 PDB: 3k6c_A
Length = 95
Score = 23.8 bits (51), Expect = 5.2
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Query: 20 DCVNRPGFAKFFFTSASEEREHAIKFISYL-----TMRGNLTDYHHHVLSI 65
+ + EE+EHA + ++ L DY I
Sbjct: 42 NACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAFDKELKDYLFTNKPI 92
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA
complex; NMR {Rous sarcoma virus}
Length = 61
Score = 22.9 bits (49), Expect = 5.7
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 16 HFSRDCVNRPG 26
H ++ C R G
Sbjct: 41 HNAKQCRKRDG 51
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron,
oxidative stress, metal transport; 2.30A {Bacteroides
fragilis}
Length = 170
Score = 23.6 bits (51), Expect = 5.8
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 23 NRPGFAKFFFTSASEEREHAIKFI 46
R F A EER HA
Sbjct: 47 MRADVQGEFEEHAEEERHHAQLIA 70
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 23.7 bits (52), Expect = 5.9
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 25 PGFAK-FFFTSASEEREHAIKF 45
PG + ++ +E E AI+
Sbjct: 100 PGLDRALLLSTGAESNEAAIRM 121
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 23.8 bits (52), Expect = 6.5
Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 25 PGFAK-FFFTSASEEREHAIKFISYLTMRGN 54
G ++ S E+A K I
Sbjct: 125 KGMSQLITMACGSCSNENAFKTIFMWYRSKE 155
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold,
structural genomic protein structure initiative; 2.00A
{Bacillus anthracis str}
Length = 149
Score = 23.5 bits (51), Expect = 6.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 23 NRPGFAKFFFTSASEEREHAIKFISYLTM 51
R FF + S+E+ HA+ +
Sbjct: 40 YRQVLKPFFESEISDEQGHALYLAEKIKT 68
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET:
RET CLR; 3.20A {Acetabularia acetabulum}
Length = 229
Score = 23.4 bits (50), Expect = 9.7
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 43 IKFISYLTMRGNLTDYHHHVLSII 66
I +Y M N D + +
Sbjct: 51 IAATAYYAMAVNYQDLTMNGERQV 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.434
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,153,379
Number of extensions: 51136
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 64
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)