RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15457
(71 letters)
>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), H chain [TaxId: 7111]}
Length = 191
Score = 52.3 bits (125), Expect = 9e-11
Identities = 34/54 (62%), Positives = 41/54 (75%)
Query: 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIP 67
GAHFS+D VNRPGFA+ FF +ASEEREHA+K I YL MRG LT+ +L + P
Sbjct: 43 GAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYLLMRGELTNDVSSLLQVRP 96
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), L chain [TaxId: 7111]}
Length = 200
Score = 51.5 bits (123), Expect = 2e-10
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 14 GAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
A+F+ NR GF+K F + E I I ++T RG
Sbjct: 47 AAYFNNYQTNRAGFSKLFKKLSDEAWSKTIDIIKHVTKRG 86
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
[TaxId: 562]}
Length = 161
Score = 39.6 bits (92), Expect = 4e-06
Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 11 FAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
A S G A F A EE H + YLT G
Sbjct: 24 QQMSAWCSYH--TFEGAAAFLRRHAQEEMTHMQRLFDYLTDTG 64
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 171
Score = 38.1 bits (88), Expect = 2e-05
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 11 FAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ ++F+RD V FAKFF + EE+EHA K I Y RG
Sbjct: 30 LSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRG 72
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens),
mitocondial isoform [TaxId: 9606]}
Length = 171
Score = 36.9 bits (85), Expect = 4e-05
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 11 FAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ +FSRD V F+++F + EE EHA K + RG
Sbjct: 30 LSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRG 72
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 173
Score = 36.5 bits (84), Expect = 5e-05
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 11 FAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRGN 54
+ +F RD + AKFF + EEREHA K + RG
Sbjct: 31 LSMAFYFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQNKRGG 74
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 162
Score = 35.3 bits (81), Expect = 1e-04
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 11 FAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ ++F D + GF+ + EE HA+K +++ RG
Sbjct: 25 LSMASYF--DSIGLKGFSNWMRVQWQEELMHAMKMFDFVSERG 65
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
[TaxId: 197]}
Length = 165
Score = 33.8 bits (77), Expect = 5e-04
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 11 FAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ + + + G F F ASEE +HA K I+YL
Sbjct: 25 LSMSSWCYEN--SLDGAGAFLFAHASEESDHAKKLITYLNETD 65
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 33.1 bits (75), Expect = 9e-04
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 11 FAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ G F RD V G FF A E+RE A + + + RG
Sbjct: 30 LSLGFFFDRDDVALEGVGHFFRELAEEKREGAERLLEFQNDRG 72
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima
[TaxId: 2336]}
Length = 164
Score = 32.7 bits (74), Expect = 0.001
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 11 FAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLTMR 52
+ +F D GFA + A EE HA+KF Y+ R
Sbjct: 27 LSMATYF--DAEGFKGFAHWMKKQAQEELTHAMKFYEYIYER 66
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1)
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 160
Score = 27.0 bits (59), Expect = 0.14
Identities = 9/49 (18%), Positives = 13/49 (26%)
Query: 22 VNRPGFAKFFFTSASEEREHAIKFISYLTMRGNLTDYHHHVLSIIPSTI 70
AK + EE HA K I+ + + I
Sbjct: 35 WGLAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPLRIGEGP 83
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 25.9 bits (56), Expect = 0.39
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 36 SEEREHAIKFISYLTMRGN-LTDYHHHVLSIIPST 69
E+R+ A+K + G ++ V++ + +
Sbjct: 24 KEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTD 58
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1)
{Escherichia coli [TaxId: 562]}
Length = 158
Score = 25.4 bits (55), Expect = 0.56
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 22 VNRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
+ + +E +HA ++I +
Sbjct: 35 WGLKRLNDVEYHESIDEMKHADRYIERILFLE 66
>d1wspa1 d.15.1.8 (A:750-832) Axin 1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 24.3 bits (53), Expect = 1.0
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 15 AHFSRDCVNRPGFAKFFFTSASEEREH 41
F ++ + + G +++F S+E +
Sbjct: 29 GQF-KELLTKKGSYRYYFKKVSDEFDC 54
>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus
[TaxId: 49283]}
Length = 362
Score = 24.3 bits (51), Expect = 1.5
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 11 FAPGAHFSRDCVNRPGFAKFFFTSASEEREHAIKFISYLT 50
F P + + + S + E A K + +
Sbjct: 247 FKPISSSAGQDIPLFYSDVVSVNSKTAHPELAKKLANVMA 286
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284
homologue {Magnetospirillum magnetotacticum ms-1
[TaxId: 272627]}
Length = 152
Score = 23.7 bits (50), Expect = 2.6
Identities = 5/31 (16%), Positives = 6/31 (19%)
Query: 23 NRPGFAKFFFTSASEEREHAIKFISYLTMRG 53
N A F A H +
Sbjct: 32 NNLDTATVFRDMARFSTLHGDEIKQRSRALE 62
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga
maritima [TaxId: 2336]}
Length = 149
Score = 22.5 bits (47), Expect = 5.3
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 24 RPGFAKFFFTSASEEREHAIKFISYLTMRG 53
K F A +ER HA F
Sbjct: 33 NGEIKKTFLELADQERIHAEIFRKMSDQEN 62
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA
polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Length = 410
Score = 22.4 bits (47), Expect = 7.7
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 21 CVNRPGFAKFFFTSASEEREHAIK 44
+ G +F ++ I
Sbjct: 41 LYDNTGHKPYFLVDLEPDKVGKIP 64
>d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 325
Score = 22.4 bits (47), Expect = 7.9
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 11 FAPGAHFSRDCVNRPG 26
FA G + +R + P
Sbjct: 1 FASGQNLARRLMETPA 16
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.434
Gapped
Lambda K H
0.267 0.0405 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 275,175
Number of extensions: 9533
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 24
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)