Query psy15458
Match_columns 176
No_of_seqs 123 out of 1079
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 21:35:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15022 ferritin-like protein 100.0 1.4E-46 3.1E-51 289.2 17.6 158 1-176 2-159 (167)
2 cd00904 Ferritin Ferritin iron 100.0 5.3E-46 1.1E-50 285.3 19.9 160 2-173 1-160 (160)
3 KOG2332|consensus 100.0 3.5E-46 7.5E-51 286.8 12.3 164 1-176 13-176 (178)
4 PRK10304 ferritin; Provisional 100.0 2.6E-44 5.7E-49 277.1 17.5 157 1-175 2-158 (165)
5 cd01056 Euk_Ferritin eukaryoti 100.0 2.3E-43 5.1E-48 270.7 20.3 161 2-174 1-161 (161)
6 COG1528 Ftn Ferritin-like prot 100.0 5.2E-42 1.1E-46 260.7 17.7 157 1-175 2-158 (167)
7 cd01055 Nonheme_Ferritin nonhe 100.0 4.1E-37 8.9E-42 234.1 18.7 156 2-175 1-156 (156)
8 PRK10635 bacterioferritin; Pro 100.0 1.5E-26 3.3E-31 177.1 18.8 143 2-161 4-146 (158)
9 TIGR00754 bfr bacterioferritin 99.9 1.3E-25 2.9E-30 171.5 19.0 143 2-161 4-146 (157)
10 PF00210 Ferritin: Ferritin-li 99.9 3.3E-25 7.3E-30 163.9 16.5 137 6-159 1-142 (142)
11 cd00907 Bacterioferritin Bacte 99.9 2.1E-23 4.5E-28 157.8 18.6 143 2-161 3-145 (153)
12 cd01041 Rubrerythrin Rubreryth 99.9 1.3E-21 2.9E-26 145.7 15.5 131 5-156 2-133 (134)
13 COG2193 Bfr Bacterioferritin ( 99.9 3.4E-21 7.4E-26 143.6 16.8 134 2-151 4-146 (157)
14 cd01052 DPSL DPS-like protein, 99.8 1.2E-19 2.6E-24 136.5 17.4 134 3-152 5-147 (148)
15 cd01046 Rubrerythrin_like rubr 99.8 9.1E-18 2E-22 123.6 15.6 118 5-153 2-119 (123)
16 PRK13456 DNA protection protei 99.6 2.6E-13 5.6E-18 105.6 17.2 136 3-154 19-163 (186)
17 cd01043 DPS DPS protein, ferri 99.3 3.1E-10 6.6E-15 84.6 14.3 121 8-144 2-130 (139)
18 cd07908 Mn_catalase_like Manga 99.1 1E-08 2.2E-13 77.8 16.4 131 2-151 11-152 (154)
19 cd00657 Ferritin_like Ferritin 99.1 1.8E-08 3.8E-13 71.1 15.4 122 8-150 2-127 (130)
20 cd01051 Mn_catalase Manganese 98.7 2E-06 4.4E-11 65.8 17.0 134 3-156 19-155 (156)
21 cd01045 Ferritin_like_AB Uncha 98.7 5.8E-07 1.3E-11 65.4 12.6 123 7-150 1-136 (139)
22 PF02915 Rubrerythrin: Rubrery 98.6 3.3E-06 7.2E-11 61.4 14.4 119 7-144 1-128 (137)
23 PRK09448 DNA starvation/statio 98.5 2.5E-05 5.4E-10 60.1 16.8 130 4-152 22-159 (162)
24 COG2406 Protein distantly rela 98.0 0.0009 1.9E-08 50.4 15.6 135 3-153 16-159 (172)
25 COG0783 Dps DNA-binding ferrit 97.9 0.0023 5.1E-08 48.9 16.6 123 4-144 15-146 (156)
26 COG1633 Uncharacterized conser 97.8 0.0059 1.3E-07 47.6 17.2 102 4-113 24-140 (176)
27 cd01044 Ferritin_CCC1_N Ferrit 97.7 0.002 4.3E-08 47.1 12.7 94 8-109 2-99 (125)
28 PRK12775 putative trifunctiona 97.6 0.0037 8E-08 60.5 16.4 135 3-158 859-1000(1006)
29 COG1592 Rubrerythrin [Energy p 97.5 0.0056 1.2E-07 47.2 13.7 96 3-115 3-99 (166)
30 TIGR02284 conserved hypothetic 97.0 0.037 8.1E-07 41.4 12.5 127 6-156 2-138 (139)
31 PF09537 DUF2383: Domain of un 96.8 0.0088 1.9E-07 42.6 7.6 97 4-107 1-107 (111)
32 cd01042 DMQH Demethoxyubiquino 96.6 0.098 2.1E-06 40.4 12.4 114 14-145 10-130 (165)
33 PF13668 Ferritin_2: Ferritin- 96.5 0.22 4.8E-06 36.5 16.5 102 6-112 3-108 (137)
34 cd01048 Ferritin_like_AB2 Unch 95.4 0.73 1.6E-05 34.1 14.4 95 7-112 3-108 (135)
35 PF03232 COQ7: Ubiquinone bios 94.3 2 4.2E-05 33.4 13.7 125 5-146 3-137 (172)
36 PF12902 Ferritin-like: Ferrit 92.0 1.2 2.6E-05 36.1 8.2 63 9-75 1-63 (227)
37 cd01046 Rubrerythrin_like rubr 90.2 2 4.2E-05 31.2 7.2 59 3-65 62-120 (123)
38 cd01041 Rubrerythrin Rubreryth 88.8 3 6.4E-05 30.5 7.4 59 3-65 72-131 (134)
39 PF05974 DUF892: Domain of unk 87.8 10 0.00022 28.8 15.7 130 5-152 6-149 (159)
40 cd07908 Mn_catalase_like Manga 84.4 7 0.00015 29.1 7.5 51 4-60 101-151 (154)
41 cd01055 Nonheme_Ferritin nonhe 84.0 7.6 0.00017 28.8 7.6 58 4-65 80-137 (156)
42 PF02915 Rubrerythrin: Rubrery 82.2 12 0.00025 26.4 7.7 51 4-60 84-134 (137)
43 cd01045 Ferritin_like_AB Uncha 81.6 13 0.00027 26.2 7.7 51 4-60 86-136 (139)
44 cd01052 DPSL DPS-like protein, 77.2 25 0.00053 25.6 8.2 62 86-158 6-67 (148)
45 COG1633 Uncharacterized conser 77.1 25 0.00055 27.2 8.5 57 3-66 112-168 (176)
46 cd00907 Bacterioferritin Bacte 75.8 24 0.00053 25.8 7.9 61 86-157 5-65 (153)
47 cd00657 Ferritin_like Ferritin 75.0 22 0.00048 23.8 7.3 52 5-63 78-129 (130)
48 COG3546 Mn-containing catalase 73.2 24 0.00052 29.4 7.7 62 2-70 18-82 (277)
49 cd07610 FCH_F-BAR The Extended 72.3 23 0.0005 26.9 7.2 34 36-71 15-48 (191)
50 PF07875 Coat_F: Coat F domain 69.8 25 0.00055 22.2 8.2 56 7-69 4-59 (64)
51 PF04305 DUF455: Protein of un 68.7 65 0.0014 26.5 10.9 64 6-76 68-132 (253)
52 PF09537 DUF2383: Domain of un 63.1 48 0.001 23.0 7.6 60 87-160 2-61 (111)
53 cd07652 F-BAR_Rgd1 The F-BAR ( 63.1 79 0.0017 25.5 12.0 33 36-70 20-52 (234)
54 PRK10635 bacterioferritin; Pro 62.1 59 0.0013 24.6 7.5 59 3-65 81-139 (158)
55 PF11860 DUF3380: Protein of u 61.8 19 0.00042 28.0 4.8 59 7-69 78-136 (175)
56 PRK12775 putative trifunctiona 61.6 50 0.0011 32.5 8.7 56 5-66 942-997 (1006)
57 PF00210 Ferritin: Ferritin-li 60.7 56 0.0012 23.0 7.5 59 4-66 80-138 (142)
58 PF05067 Mn_catalase: Manganes 58.1 1.1E+02 0.0024 25.7 11.6 104 3-112 19-164 (283)
59 CHL00185 ycf59 magnesium-proto 58.0 1.2E+02 0.0027 26.1 11.6 106 5-115 80-185 (351)
60 PLN02508 magnesium-protoporphy 56.9 1.3E+02 0.0028 26.0 9.3 106 5-115 80-185 (357)
61 cd01047 ACSF Aerobic Cyclase S 55.8 1.3E+02 0.0028 25.7 11.1 107 4-115 63-169 (323)
62 smart00055 FCH Fes/CIP4 homolo 55.7 56 0.0012 21.4 7.2 52 37-97 25-76 (87)
63 cd01050 Acyl_ACP_Desat Acyl AC 54.8 1.3E+02 0.0028 25.4 16.6 117 4-135 59-185 (297)
64 cd01051 Mn_catalase Manganese 54.7 91 0.002 23.6 8.4 59 2-67 97-155 (156)
65 cd07649 F-BAR_GAS7 The F-BAR ( 54.5 1.1E+02 0.0025 24.6 10.1 94 37-159 21-115 (233)
66 PF14530 DUF4439: Domain of un 54.3 86 0.0019 23.1 12.3 93 8-109 1-94 (131)
67 PRK13654 magnesium-protoporphy 53.9 1.5E+02 0.0032 25.7 11.0 135 5-156 84-218 (355)
68 cd07909 YciF YciF bacterial st 53.5 94 0.002 23.4 15.9 130 5-156 4-146 (147)
69 PF00611 FCH: Fes/CIP4, and EF 51.3 30 0.00064 22.8 3.9 29 36-66 24-52 (91)
70 cd07648 F-BAR_FCHO The F-BAR ( 51.0 70 0.0015 26.0 6.8 31 37-69 21-51 (261)
71 cd07674 F-BAR_FCHO1 The F-BAR 47.5 76 0.0017 25.9 6.5 26 38-65 22-47 (261)
72 TIGR02029 AcsF magnesium-proto 47.1 1.9E+02 0.004 24.9 11.6 106 5-115 74-179 (337)
73 PRK13456 DNA protection protei 43.5 1.6E+02 0.0035 23.2 8.0 57 4-65 107-163 (186)
74 PF08066 PMC2NT: PMC2NT (NUC01 42.6 59 0.0013 22.2 4.3 58 36-96 21-79 (91)
75 TIGR00754 bfr bacterioferritin 42.2 1.4E+02 0.003 22.1 7.3 58 4-65 82-139 (157)
76 cd07673 F-BAR_FCHO2 The F-BAR 42.0 1.1E+02 0.0024 25.2 6.7 30 38-69 29-58 (269)
77 cd07910 MiaE MiaE tRNA-modifyi 40.4 1.8E+02 0.0039 22.8 16.7 62 4-71 18-79 (180)
78 PF03405 FA_desaturase_2: Fatt 39.1 2.5E+02 0.0055 24.1 17.5 113 9-135 67-191 (330)
79 cd07678 F-BAR_FCHSD1 The F-BAR 37.5 2.4E+02 0.0052 23.4 8.3 88 22-111 6-98 (263)
80 PRK10304 ferritin; Provisional 37.4 1.8E+02 0.004 22.1 7.7 61 4-68 82-145 (165)
81 PRK09101 nrdB ribonucleotide-d 36.2 2.1E+02 0.0046 24.8 7.7 72 29-106 218-292 (376)
82 PF09570 RE_SinI: SinI restric 35.5 2.3E+02 0.0051 22.7 7.3 119 4-144 7-127 (221)
83 PF10097 DUF2335: Predicted me 35.2 1E+02 0.0022 18.8 4.1 30 34-65 10-39 (50)
84 PF06175 MiaE: tRNA-(MS[2]IO[6 34.8 2.6E+02 0.0056 23.0 8.0 67 4-72 27-132 (240)
85 PRK07209 ribonucleotide-diphos 33.4 2.6E+02 0.0056 24.2 7.8 80 18-105 214-296 (369)
86 cd01044 Ferritin_CCC1_N Ferrit 33.4 1.8E+02 0.0038 20.7 6.9 45 7-64 79-123 (125)
87 KOG2297|consensus 33.3 2.9E+02 0.0064 24.0 7.8 87 26-115 229-328 (412)
88 PRK05685 fliS flagellar protei 33.3 94 0.002 22.7 4.4 32 84-115 61-94 (132)
89 COG2833 Uncharacterized protei 32.4 2.9E+02 0.0063 22.8 7.9 62 5-71 76-137 (268)
90 KOG4061|consensus 31.8 2.6E+02 0.0057 22.1 8.8 92 15-113 59-158 (217)
91 cd07657 F-BAR_Fes_Fer The F-BA 31.7 2.8E+02 0.006 22.4 11.6 28 37-66 21-48 (237)
92 COG2941 CAT5 Ubiquinone biosyn 31.3 2.7E+02 0.0059 22.2 11.4 55 14-75 51-105 (204)
93 PF02561 FliS: Flagellar prote 30.4 90 0.0019 22.3 3.9 32 84-115 55-88 (122)
94 KOG2969|consensus 27.4 3E+02 0.0065 22.1 6.5 75 25-113 81-159 (264)
95 KOG2364|consensus 27.3 72 0.0016 28.0 3.2 55 1-72 40-94 (433)
96 COG4817 DNA-binding ferritin-l 27.0 2.4E+02 0.0052 20.2 5.5 51 50-106 26-76 (111)
97 cd07681 F-BAR_PACSIN3 The F-BA 26.1 2.7E+02 0.0058 23.0 6.4 51 37-96 21-71 (258)
98 PRK09614 nrdF ribonucleotide-d 25.2 3.5E+02 0.0075 22.7 7.1 65 35-107 182-248 (324)
99 PF11553 DUF3231: Protein of u 24.4 3E+02 0.0066 20.5 8.3 56 14-75 104-159 (166)
100 cd07658 F-BAR_NOSTRIN The F-BA 23.9 3.9E+02 0.0084 21.5 9.6 28 37-66 21-48 (239)
101 PRK13966 nrdF2 ribonucleotide- 23.6 3.3E+02 0.0072 23.0 6.7 71 29-107 176-247 (324)
102 PF06744 DUF1215: Protein of u 22.0 3E+02 0.0066 19.6 7.2 89 4-94 30-122 (125)
103 PF10239 DUF2465: Protein of u 22.0 47 0.001 28.3 1.2 23 64-86 291-313 (318)
104 COG2996 Predicted RNA-bindinin 21.8 86 0.0019 26.3 2.6 45 50-95 221-267 (287)
105 TIGR02284 conserved hypothetic 20.5 3.5E+02 0.0077 19.8 6.5 33 126-159 27-59 (139)
No 1
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=1.4e-46 Score=289.15 Aligned_cols=158 Identities=18% Similarity=0.154 Sum_probs=150.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q psy15458 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN 80 (176)
Q Consensus 1 ~~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~ 80 (176)
.+++++++||+|||.|++|||+|++||+||+ +.+|||||+||+.+| .|||+||++|+ +|+++|||+|.+++|++|+
T Consensus 2 ~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa-~EEreHA~k~~-~yl~~rGg~v~l~~I~~P~ 77 (167)
T PRK15022 2 ATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQA-QSNVTQMMRMF-NFMKSAGATPIVKAIDVPG 77 (167)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCceeeCCCCCCc
Confidence 3689999999999999999999999999998 689999999999999 99999999999 9999999999999999884
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy15458 81 KMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTE 160 (176)
Q Consensus 81 ~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~ 160 (176)
.+|+|+.++|+.+|++|+.||++|++|+++|.++ +|+++++||. +|+.||+++++.+.++++.+++++
T Consensus 78 -~~~~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~----------~D~~t~~FL~-wfv~EQ~eEe~~~~~ild~l~~~~ 145 (167)
T PRK15022 78 -EKLNSLEELFQKTLEEYEQRSSTLAQLADEAKAL----------NDDSTLNFLR-DLEKEQQHDGLLLQTILDEVRSAK 145 (167)
T ss_pred -cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999 9999999998 899999999999999999999998
Q ss_pred CCCCcceeeecccccC
Q psy15458 161 GTHGKLTEFLMDKEFL 176 (176)
Q Consensus 161 ~~~~~~g~~l~D~~ll 176 (176)
++ |.|+|+||++++
T Consensus 146 ~~--g~g~~~~D~~~~ 159 (167)
T PRK15022 146 LA--GLCPVQTDQHLL 159 (167)
T ss_pred CC--CcchhHhhHHHH
Confidence 64 799999998764
No 2
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=5.3e-46 Score=285.32 Aligned_cols=160 Identities=29% Similarity=0.450 Sum_probs=152.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCc
Q psy15458 2 VHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNK 81 (176)
Q Consensus 2 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~ 81 (176)
|++|+++||+||+.|++||++|++||+||+++++|+||||+||+.+| +|||+||++|+ +||+.|||.|.++.|++|+.
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s-~eE~~HA~~l~-~yi~~rgg~~~l~~i~~~~~ 78 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQA-QEEREHAEKFY-KYQNERGGRVELQDIEKPPS 78 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHH-HHHHHHHHHHH-HHHHHCCCccccCcCCCCcc
Confidence 67899999999999999999999999999988899999999999999 99999999999 99999999999999987755
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhC
Q psy15458 82 MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEG 161 (176)
Q Consensus 82 ~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~~ 161 (176)
.+|++++++|+.+|++|+.+++.|++|+++|.+. +|+.+++||+.+||+||++++++++++|++++++++
T Consensus 79 ~~~~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~----------~D~~t~~fl~~~fi~eQ~ee~~~~~~~l~~l~~~~~ 148 (160)
T cd00904 79 DEWGGTLDAMEAALKLEKFVNQALLDLHELASEE----------KDPHLCDFLESHFLDEQVKEIKQVGDILTNLERLNG 148 (160)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhhcC
Confidence 5899999999999999999999999999999999 999999999966999999999999999999999986
Q ss_pred CCCcceeeeccc
Q psy15458 162 THGKLTEFLMDK 173 (176)
Q Consensus 162 ~~~~~g~~l~D~ 173 (176)
++.|+|+|+||+
T Consensus 149 ~~~~~~~~~~D~ 160 (160)
T cd00904 149 QQAGSGEYLFDR 160 (160)
T ss_pred CCCCceeeeeCC
Confidence 545799999996
No 3
>KOG2332|consensus
Probab=100.00 E-value=3.5e-46 Score=286.82 Aligned_cols=164 Identities=33% Similarity=0.480 Sum_probs=159.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q psy15458 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN 80 (176)
Q Consensus 1 ~~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~ 80 (176)
++.++..++|.|||.|+++||.|++||+||+|++++++||++||.++| .|||+||.+++ +|+++|||+|.+++|.+|.
T Consensus 13 ~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s-~eereha~klm-~~~n~rgg~i~l~~i~~P~ 90 (178)
T KOG2332|consen 13 YHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQS-QEEREHAEKLM-KTQNMRGGRIELQDIKKPE 90 (178)
T ss_pred chhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhh-hhhhhhHHHHH-HHHHHhCCccccccccccc
Confidence 357889999999999999999999999999999999999999999999 99999999999 9999999999999999998
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy15458 81 KMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTE 160 (176)
Q Consensus 81 ~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~ 160 (176)
.++|++...+|+.|+.+|+.|++++.+|+.+|.+. +||++++||+++||.|||+.|++|+++++++++++
T Consensus 91 ~~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~k----------nD~hL~dflE~~fL~eQVksIkeL~~~~~~l~k~~ 160 (178)
T KOG2332|consen 91 LDEWGKGLEALEAALHLEKNVNQSLLELHSLATKK----------NDPHLCDFLESHFLNEQVKSIKELSDYLANLKKMG 160 (178)
T ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CChHHHHHHHHhhhHHHHHHHHHHHHHHHhHHhcc
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred CCCCcceeeecccccC
Q psy15458 161 GTHGKLTEFLMDKEFL 176 (176)
Q Consensus 161 ~~~~~~g~~l~D~~ll 176 (176)
.+++|+|+|+||+.++
T Consensus 161 ~~~~g~~~~lfd~~~~ 176 (178)
T KOG2332|consen 161 APDGGLGEYLFDKYLL 176 (178)
T ss_pred CCCCchhhhhhhhhhc
Confidence 8888999999999874
No 4
>PRK10304 ferritin; Provisional
Probab=100.00 E-value=2.6e-44 Score=277.06 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=150.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q psy15458 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN 80 (176)
Q Consensus 1 ~~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~ 80 (176)
+|++++++||+|||.|++||++|++||+||+ ++|+||||+||+.+| .||++||++|+ +||+.|||.|.+++|++|
T Consensus 2 ~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs-~EE~~HA~kl~-~~i~~rgg~~~~~~i~~p- 76 (165)
T PRK10304 2 LKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHA-QEEMTHMQRLF-DYLTDTGNLPRINTVESP- 76 (165)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCeeeCCCCCC-
Confidence 6899999999999999999999999999999 699999999999999 99999999999 999999999999999866
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy15458 81 KMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTE 160 (176)
Q Consensus 81 ~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~ 160 (176)
..+|.++.++|+.+|++|+.++..|++++++|.+. +|+.+.+||. +||+||+++++.++++++++++++
T Consensus 77 ~~~~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~----------~D~~t~~fl~-~fl~EQveEe~~~~~l~~~l~~~~ 145 (165)
T PRK10304 77 FAEYSSLDELFQETYKHEQLITQKINELAHAAMTN----------QDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAG 145 (165)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 46999999999999999999999999999999999 9999999998 899999999999999999999998
Q ss_pred CCCCcceeeeccccc
Q psy15458 161 GTHGKLTEFLMDKEF 175 (176)
Q Consensus 161 ~~~~~~g~~l~D~~l 175 (176)
++ |.|+|+||+++
T Consensus 146 ~~--g~~~y~~D~~l 158 (165)
T PRK10304 146 KS--GEGLYFIDKEL 158 (165)
T ss_pred CC--cchHHHHhHHH
Confidence 63 78999999986
No 5
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00 E-value=2.3e-43 Score=270.74 Aligned_cols=161 Identities=35% Similarity=0.537 Sum_probs=152.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCc
Q psy15458 2 VHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNK 81 (176)
Q Consensus 2 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~ 81 (176)
+++|+++||+||+.|++||++|++||+||++.++|+||||+||+.+| +|||+||++|+ +||+.|||.|++++|++|++
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a-~eE~~HA~~l~-~~i~~rgg~~~~~~i~~~~~ 78 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLS-DEEREHAEKLI-KYQNKRGGRVVLQDIKKPEK 78 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCeeecCCCCCCCC
Confidence 57899999999999999999999999999965559999999999999 99999999999 99999999999999987754
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhC
Q psy15458 82 MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEG 161 (176)
Q Consensus 82 ~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~~ 161 (176)
..|.++.++|+.+|++|+.+++.|++++++|.+. +|+.+.+||+.+||+||+++++.+++++++++++++
T Consensus 79 ~~~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~----------~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~~~~~ 148 (161)
T cd01056 79 DEWGSGLEALELALDLEKLVNQSLLDLHKLASEH----------NDPHLADFLESEFLEEQVESIKKLAGYITNLKRVGK 148 (161)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHc----------CCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999 999999999966999999999999999999999987
Q ss_pred CCCcceeeecccc
Q psy15458 162 THGKLTEFLMDKE 174 (176)
Q Consensus 162 ~~~~~g~~l~D~~ 174 (176)
++.|.|+|+||+.
T Consensus 149 ~~~~~~~yl~D~~ 161 (161)
T cd01056 149 PQSGLGEYLFDKY 161 (161)
T ss_pred CCCCceeeeccCC
Confidence 6558999999984
No 6
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-42 Score=260.74 Aligned_cols=157 Identities=25% Similarity=0.363 Sum_probs=149.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC
Q psy15458 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN 80 (176)
Q Consensus 1 ~~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~ 80 (176)
.++++.++||+|||.|++||+.|++||+||+ ..|+||+|+||+.+| +||+.||+||+ +|++.||++|.+..|.+|
T Consensus 2 ls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa-~EE~~H~~k~~-~yl~~~g~~~~l~~I~~P- 76 (167)
T COG1528 2 LSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQA-QEELTHAMKLF-NYLNERGARPELKAIEAP- 76 (167)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHH-HHHHHHHHHHH-HHHHhcCCCceecCcCCC-
Confidence 3688999999999999999999999999999 699999999999999 99999999999 999999999999999866
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy15458 81 KMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTE 160 (176)
Q Consensus 81 ~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~ 160 (176)
..+|+++.++|+.+|++|+.||..|++|..+|.+. +|+.+.+||. +|+.||+++++.+++++.+++++|
T Consensus 77 ~~~~~s~~e~f~~tlehEq~vt~~I~~L~~~a~~~----------kD~~T~nFLq-Wfv~EQ~eEe~l~~~I~d~~~~ag 145 (167)
T COG1528 77 PNKFSSLKELFEKTLEHEQKVTSSINELAEVAREE----------KDYATFNFLQ-WFVAEQVEEEKLFKTILDKLELAG 145 (167)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999999999999999 9998888887 899999999999999999999998
Q ss_pred CCCCcceeeeccccc
Q psy15458 161 GTHGKLTEFLMDKEF 175 (176)
Q Consensus 161 ~~~~~~g~~l~D~~l 175 (176)
+ .|.|+|++|++|
T Consensus 146 ~--~~~~l~~~D~~L 158 (167)
T COG1528 146 N--DGEGLYLIDKEL 158 (167)
T ss_pred C--CccchhhhHHHH
Confidence 7 479999999987
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=100.00 E-value=4.1e-37 Score=234.13 Aligned_cols=156 Identities=26% Similarity=0.365 Sum_probs=148.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCc
Q psy15458 2 VHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNK 81 (176)
Q Consensus 2 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~ 81 (176)
|++|+++||+|++.|+.|+++|++||.+|++ +|+|||++||+..| .+|+.||.+++ +|+++|||.|.++++++|+
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a-~eE~~HA~~l~-~~i~~~gg~~~~~~~~~~~- 75 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQA-QEEREHAMKFF-DYLNDRGGRVELPAIEAPP- 75 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHH-HHHHHHHHHHH-HHHHHCCCCeeCCCCCCCC-
Confidence 5799999999999999999999999999994 79999999999999 99999999999 9999999999999988664
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhC
Q psy15458 82 MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEG 161 (176)
Q Consensus 82 ~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~~ 161 (176)
..|+++.++|+.+|++|+.+++.+++++++|... +|+.+++|++ +|+++|++.++.+++++++++++|.
T Consensus 76 ~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~----------~D~~~~~~l~-~~l~~q~e~~~~~~~~l~~l~~~g~ 144 (156)
T cd01055 76 SEFESLLEVFEAALEHEQKVTESINNLVDLALEE----------KDYATFNFLQ-WFVKEQVEEEALARDILDKLKLAGD 144 (156)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4899999999999999999999999999999999 9999999998 8999999999999999999999986
Q ss_pred CCCcceeeeccccc
Q psy15458 162 THGKLTEFLMDKEF 175 (176)
Q Consensus 162 ~~~~~g~~l~D~~l 175 (176)
+ |+|+|+||+.|
T Consensus 145 ~--~~~~~~~d~~l 156 (156)
T cd01055 145 D--GGGLYMLDKEL 156 (156)
T ss_pred C--cchHHHhcccC
Confidence 4 79999999875
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.95 E-value=1.5e-26 Score=177.06 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=129.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCc
Q psy15458 2 VHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNK 81 (176)
Q Consensus 2 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~ 81 (176)
++++++.||++++.|+.|+++|+.+|.+|+ +||+++++.+|+.+| .||+.||.+|+ +||+.+||.|++++++++ .
T Consensus 4 ~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea-~eEm~HA~~l~-eRIl~LgG~P~~~~~~~~-~ 78 (158)
T PRK10635 4 DVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHES-IDEMKHADKYI-ERILFLEGIPNLQDLGKL-N 78 (158)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCCCCCCCCCC-C
Confidence 688999999999999999999999999999 799999999999999 99999999999 999999999999997644 3
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhC
Q psy15458 82 MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEG 161 (176)
Q Consensus 82 ~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~~ 161 (176)
...++.++|+.++++|+.++..|+++++.|... +|+.+.++|. +||.+.-+-+..+...+..+.++|.
T Consensus 79 -~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~----------~D~~s~~ll~-~iL~dEe~H~~~le~~l~~i~~~G~ 146 (158)
T PRK10635 79 -IGEDVEEMLRSDLRLELEGAKDLREAIAYADSV----------HDYVSRDMMI-EILADEEGHIDWLETELDLIGKLGL 146 (158)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 347999999999999999999999999999998 8888888887 5787777777777777777777764
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.94 E-value=1.3e-25 Score=171.46 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCc
Q psy15458 2 VHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNK 81 (176)
Q Consensus 2 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~ 81 (176)
+++++++||++++.|+.|+++|+.|+.+|. .++++|++.||+.++ .||++||.+++ +|++.+||.|.+.++++|+.
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a-~EE~~Ha~~la-eri~~lGg~p~~~~i~~~~~ 79 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHES-IDEMKHADEII-ERILFLEGLPNLQDLGKLRI 79 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHH-HHHHHHHHHHH-HHHHHCCCCCCCCcCCCCCC
Confidence 578999999999999999999999999996 799999999999999 99999999999 99999999999988875543
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhC
Q psy15458 82 MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEG 161 (176)
Q Consensus 82 ~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~~ 161 (176)
. .++.++|+.+++.|+.++..++++++.|.+. +|+.+.++|. +|+.++.+....+..++..+.++|.
T Consensus 80 -~-~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~----------~D~~t~~ll~-~~i~eee~h~~~l~~~l~~~~~~g~ 146 (157)
T TIGR00754 80 -G-ETVREMLEADLALELDVLNRLKEAIAYAEEV----------RDYVSRDLLE-EILEDEEEHIDWLETQLELIDKLGL 146 (157)
T ss_pred -C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4 7899999999999999999999999999998 9999999988 7999999999999999999998874
No 10
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.94 E-value=3.3e-25 Score=163.90 Aligned_cols=137 Identities=28% Similarity=0.387 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC-----CCCCC
Q psy15458 6 TNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHH-----HQGVN 80 (176)
Q Consensus 6 ~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~-----i~~~~ 80 (176)
+++||++++.|+.++++|+.++.+|. +.+++|+++||+.++ +++++||.+++ +|+..|||.|.... +++|+
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a-~e~~~h~~~l~-e~i~~lgg~p~~~~~~~~~~~~~~ 76 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQA-EEEREHADELA-ERILMLGGKPSGSPVEIPEIPKPP 76 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHTTS-SSTSHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHH-HHHHHHHHHHH-HHHhcCCCCCCCcHHHhhhhhccc
Confidence 57999999999999999999999999 799999999999999 99999999999 99999999776543 44443
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy15458 81 KMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKT 159 (176)
Q Consensus 81 ~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~ 159 (176)
.|+++.++|+.+++.|+.++..++++++.|.+. +|+.+.+|+ .+|+.+|.+.++.++++|+++++|
T Consensus 77 --~~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~----------~D~~t~~~~-~~~l~~~~~~~~~l~~~l~~l~~~ 142 (142)
T PF00210_consen 77 --EWTDPREALEAALEDEKEIIEEYRELIKLAEKE----------GDPETADFL-DEFLEEEEKHIWMLQAHLTNLKRM 142 (142)
T ss_dssp --SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 388999999999999999999999999999998 999999999 589999999999999999999986
No 11
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.92 E-value=2.1e-23 Score=157.81 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=132.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCc
Q psy15458 2 VHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNK 81 (176)
Q Consensus 2 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~ 81 (176)
++++++.||++|+.|+.++++|+.+|.+|+ ..+++|++++|+.++ .+|+.||..+. +|++.+||.|....+++|+.
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a-~ee~~Ha~~la-e~i~~lGg~p~~~~~~~~~~ 78 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKES-IEEMKHADKLI-ERILFLEGLPNLQRLGKLRI 78 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCCCCCcCCCCCc
Confidence 578999999999999999999999999997 699999999999999 99999999999 99999999999877664432
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhC
Q psy15458 82 MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEG 161 (176)
Q Consensus 82 ~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~~ 161 (176)
. .++.++++.+++.|+.++..+++++..|.+. +|+.+.+++. +++.++.+.+..+...+..++++|+
T Consensus 79 -~-~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~----------~D~~t~~~l~-~~~~~e~~h~~~l~~~l~~~~~~g~ 145 (153)
T cd00907 79 -G-EDVPEMLENDLALEYEAIAALNEAIALCEEV----------GDYVSRDLLE-EILEDEEEHIDWLETQLDLIDKMGL 145 (153)
T ss_pred -C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 2 4789999999999999999999999999998 9999999998 6999999999999999999999986
No 12
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.88 E-value=1.3e-21 Score=145.69 Aligned_cols=131 Identities=13% Similarity=0.060 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcccc
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTW 84 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~ 84 (176)
+.+.||+.+..|+.++++|++||.++. .+|++|+++||+.+| .+|+.||.+++ +|+..+||.|. .| ...|
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~--~~g~~~~a~~f~~~a-~eE~~HA~~~~-~~l~~l~g~~~-----~~-~~~~ 71 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKAR--KEGYEQIARLFRATA-ENEKEHAKGHF-KLLKGLGGGDT-----GP-PIGI 71 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHH-HHHHHHHHHHH-HHHhcCCCCCc-----CC-CCCc
Confidence 467899999999999999999999999 699999999999999 99999999999 99999999998 23 3478
Q ss_pred ccHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy15458 85 NSAAHAVQDALNLETQ-VTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTM 156 (176)
Q Consensus 85 ~~~~~~~~~al~~Ek~-v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l 156 (176)
+++.+.|+.++++|+. ++..|++++++|..+ +|+...+|++ ..+.+...-.+.+...+.+|
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e----------~d~~~~~~f~-~i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEEE----------GFKEAARSFE-AIAEAEKVHAERYKKALENL 133 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------CCHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999995 889999999999999 9999999988 47777766666666665543
No 13
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.4e-21 Score=143.56 Aligned_cols=134 Identities=16% Similarity=0.178 Sum_probs=118.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCc
Q psy15458 2 VHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNK 81 (176)
Q Consensus 2 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~ 81 (176)
+++++..||+++..||.|.++|+.+|.++. +||+..++++|+++| .+|+.||.+++ ++|++.+|.|++++.. +-
T Consensus 4 ~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~es-i~Em~HAd~li-eRIlfLeG~Pnlq~~~--~l 77 (157)
T COG2193 4 DPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHES-IEEMKHADQLI-ERILFLEGLPNLQDLG--KL 77 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHH-HHHHHHHHHHH-HHHHhccCCCCccccc--cc
Confidence 478999999999999999999999999999 899999999999999 99999999999 9999999999999964 24
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhh---------hhhHHHHHHHHHHHHH
Q psy15458 82 MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLT---------GEFLDEQYKGQRKLAG 151 (176)
Q Consensus 82 ~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~---------~~fleeQ~~~i~~l~~ 151 (176)
....++.+++++.|++|..+...+++.+..|++. +||...+.|. .+||+.|...+.++|.
T Consensus 78 ~iG~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~----------~Dyvsrdl~~~iL~deEEHid~LetqL~li~~iG~ 146 (157)
T COG2193 78 RIGETVKEMLEADLALEYEARDALKEAIAYCEEV----------QDYVSRDLLEEILADEEEHIDWLETQLDLIAKIGE 146 (157)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ccchHHHHHHHHHcchHHHHHHHHHHHHHHHHHhH
Confidence 5788999999999999999999999999999998 5554444444 2677777777777664
No 14
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.85 E-value=1.2e-19 Score=136.51 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCC-----
Q psy15458 3 HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQ----- 77 (176)
Q Consensus 3 ~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~----- 77 (176)
+++++.||++++.|+.++++|+.++.++. +.++++++++|+.++ .+|++||.++. +|++.+||.|......
T Consensus 5 ~~~~~~Ln~~la~e~~~~~~y~~~~~~~~--g~~f~~l~~~~~~~~-~ee~~Had~la-Eri~~lGg~p~~~~~~~~~~~ 80 (148)
T cd01052 5 DELIELLNKAFADEWLAYYYYTILAKHVK--GPEGEGIKEELEEAA-EEELNHAELLA-ERIYELGGTPPRDPKDWYEIS 80 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCCCCCCChHHHHHHh
Confidence 57899999999999999999999999998 689999999999999 99999999999 9999999999865420
Q ss_pred ----CCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHH
Q psy15458 78 ----GVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGM 152 (176)
Q Consensus 78 ----~~~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~ 152 (176)
+.+...+.++.++|+.+++.|+.++..++++++.|. . +|+.+.+++. +++.+|.+.++.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~-~----------~D~~t~~ll~-~~l~de~~h~~~~~~~ 147 (148)
T cd01052 81 GCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTH-G----------KDPVTYDLAL-AILNEEIEHEEDLEEL 147 (148)
T ss_pred cccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHc-C----------CChHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 111235678999999999999999999999999985 5 8898999988 6999999888877664
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.79 E-value=9.1e-18 Score=123.56 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcccc
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTW 84 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~ 84 (176)
+++.||.+++.|++++.+|+.||.|++ ..|+||+|++|+.+| .+|+.||.++. +++ |+ | |
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~--~eG~~~~A~~f~~~a-~eE~~HA~~~~-~~l---~~------i--~----- 61 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQ--REGYPEVAEELKRIA-MEEAEHAARFA-ELL---GK------V--S----- 61 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH-HHHHHHHHHHH-HHH---hc------C--c-----
Confidence 678999999999999999999999999 699999999999999 99999999999 865 22 1 1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy15458 85 NSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGML 153 (176)
Q Consensus 85 ~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l 153 (176)
+|+.+.|+.++++|+.++..|.+++++|.++ +|+...+||. ..+...-.-.+.+...+
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~~e----------gd~~~~~~~~-~~~~~E~~H~~~~~~~l 119 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAKAE----------GLDEAHDFFH-EAAKDEARHGKMLKGLL 119 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHc----------CCHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999 9999998887 34444444444444443
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.58 E-value=2.6e-13 Score=105.58 Aligned_cols=136 Identities=12% Similarity=0.128 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCC--C--
Q psy15458 3 HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQ--G-- 78 (176)
Q Consensus 3 ~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~--~-- 78 (176)
++++++||+.+..|+.+.+.|..+++... ....++++.|+.... .||+.||+.+. ++|.+.||.|.+.+-+ .
T Consensus 19 ~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~-~EEl~HA~~lA-eRI~qLGG~P~~~p~~~~~ls 94 (186)
T PRK13456 19 DKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDAR-LEDRNHFEALV-PRIYELGGKLPRDIREFHDIS 94 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCCCCCCChHHHhhhh
Confidence 47899999999999999999999999998 688899999999999 99999999999 9999999999865531 0
Q ss_pred ----CC-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy15458 79 ----VN-KMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGML 153 (176)
Q Consensus 79 ----~~-~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l 153 (176)
+. ..+++++.++++..|.-|+..+..++++++.+. . +||.+.+.+. +.|.+..+-...|.+.|
T Consensus 95 ~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~----------kDp~T~~l~~-~IL~dE~eH~~dl~~lL 162 (186)
T PRK13456 95 ACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-G----------KDPRTYDLAL-AILQEEIEHEAWFSELL 162 (186)
T ss_pred cCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----------CCccHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 00 123668999999999999999999999999998 4 7787777777 48999999998999887
Q ss_pred H
Q psy15458 154 S 154 (176)
Q Consensus 154 ~ 154 (176)
.
T Consensus 163 ~ 163 (186)
T PRK13456 163 G 163 (186)
T ss_pred h
Confidence 4
No 17
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=99.26 E-value=3.1e-10 Score=84.64 Aligned_cols=121 Identities=16% Similarity=0.038 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC--------CCCC
Q psy15458 8 LMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHH--------HQGV 79 (176)
Q Consensus 8 ~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~--------i~~~ 79 (176)
.||..+..+...+..|....-... +.++..+..+|...+ .++++|+..++ +++...||.|.... ++.+
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~-~~~~~~~D~lA-ERi~~lgg~P~~~~~~~~~~s~l~~~ 77 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELY-DELREAIDEIA-ERIRALGGKPLGTLKEYAELSTIKEE 77 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCCCCCHHHHHhHCCCCCC
Confidence 689999999999999887666555 799999999999999 99999999999 99999999998653 4322
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHH
Q psy15458 80 NKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYK 144 (176)
Q Consensus 80 ~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~ 144 (176)
...+.++.++++..++.|..+...++++++.|.+. +|+.+.+.+. +.+.+.-+
T Consensus 78 -~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~----------~D~~t~~ll~-~il~~~ek 130 (139)
T cd01043 78 -PAGVLSAKEMVAELLEDYETLIEELREAIELADEA----------GDPATADLLT-EIIRELEK 130 (139)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHH-HHHHHHHH
Confidence 22566889999999999999999999999999998 8888888876 34444333
No 18
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=99.11 E-value=1e-08 Score=77.76 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHH---HHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCC
Q psy15458 2 VHSCTNLMMQQVQ---KELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQG 78 (176)
Q Consensus 2 ~~~~~~~Ln~qi~---~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~ 78 (176)
+++...+|++++. .|+.++.+|+..+.... .+.+.+++.|...| .+|+.|+..+. +++..+||.|.+.....
T Consensus 11 ~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~---~~~~~~k~~f~~lA-~eE~~H~~~l~-~~i~~lgg~p~~~~~~~ 85 (154)
T cd07908 11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISE---EKYPEIAETFLGIA-IVEMHHLEILG-QLIVLLGGDPRYRSSSS 85 (154)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHHHHHcc---CCCHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCCCCcchhhcc
Confidence 4567788899988 99999999999999886 37899999999999 99999999999 99999999887543210
Q ss_pred C--------CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHH
Q psy15458 79 V--------NKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLA 150 (176)
Q Consensus 79 ~--------~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~ 150 (176)
. ......++.++++.++..|+.....+..+... . .|+...+.|. ..+.+..+-++.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~---~----------~d~~~r~ll~-~I~~eE~~H~~~L~ 151 (154)
T cd07908 86 DKFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAET---I----------KDPYIRALLN-RIILDEKLHIKILE 151 (154)
T ss_pred ccCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH---c----------CCHHHHHHHH-HHHHHHHHHHHHHH
Confidence 0 01134578999999999999999999998763 4 7787777776 46666665555554
Q ss_pred H
Q psy15458 151 G 151 (176)
Q Consensus 151 ~ 151 (176)
.
T Consensus 152 ~ 152 (154)
T cd07908 152 E 152 (154)
T ss_pred h
Confidence 4
No 19
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.08 E-value=1.8e-08 Score=71.05 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC----CCCCCccc
Q psy15458 8 LMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHH----HQGVNKMT 83 (176)
Q Consensus 8 ~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~----i~~~~~~~ 83 (176)
.|+..+..|..++..|..++..+. .+++..+|...+ .+|+.|+..+. +++..+|+.|.... ...++...
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a-~~E~~H~~~l~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 74 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIA-DEERRHADALA-ERLRELGGTPPLPPAHLLAAYALPKT 74 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCCCCCCCHHHHHHhcccCCC
Confidence 689999999999999999999885 689999999999 99999999999 99999999887443 01122345
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHH
Q psy15458 84 WNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLA 150 (176)
Q Consensus 84 ~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~ 150 (176)
..++.+++..+...|......+..+...+ .|+.+.+++. ..+.++..-...+.
T Consensus 75 ~~~~~~~l~~~~~~E~~~~~~y~~~~~~~-------------~d~~~~~~~~-~~~~~E~~H~~~~~ 127 (130)
T cd00657 75 SDDPAEALRAALEVEARAIAAYRELIEQA-------------DDPELRRLLE-RILADEQRHAAWFR 127 (130)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhc-------------CChHHHHHHH-HHHHHHHHHHHHHH
Confidence 67889999999999999888888877554 5566777766 35555554444443
No 20
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.74 E-value=2e-06 Score=65.75 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCC
Q psy15458 3 HSCTNLMMQQVQ---KELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGV 79 (176)
Q Consensus 3 ~~~~~~Ln~qi~---~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~ 79 (176)
|...++|.+++. .|+.|+.+|+..|..+. ..+.++..|...+ .||+.|++.+. +.+.+.||.+.-.+-..+
T Consensus 19 p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia-~eEm~H~e~la-~~I~~Lg~~~~g~pw~~~ 92 (156)
T cd01051 19 PRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIG-TEELSHLEMVA-TLIAMLLKDSQGVPWTAA 92 (156)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHcCCCCCCcCCCc
Confidence 445566666654 69999999999999994 4589999999999 99999999999 999999975543221111
Q ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy15458 80 NKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTM 156 (176)
Q Consensus 80 ~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l 156 (176)
-....+++...+...++.|+.....+.+++..+ +||.+.+.|. ..+.....-...++..+..+
T Consensus 93 yv~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~-------------~Dp~v~~~l~-~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 93 YIQSSGNLVADLRSNIAAESRARLTYERLYEMT-------------DDPGVKDTLS-FLLVREIVHQNAFGKALESL 155 (156)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-------------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 112345799999999999999999999998664 6776666655 35555566666677766654
No 21
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.71 E-value=5.8e-07 Score=65.44 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcccccCCC------C
Q psy15458 7 NLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRG--NLTDYHHHQ------G 78 (176)
Q Consensus 7 ~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rG--g~~~~~~i~------~ 78 (176)
+.||..|..|..+...|..++..+.. +++..+|...+ .+|..|+..+. ..+..+| +.|...... .
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la-~eE~~H~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELA-EEEKEHAERLE-ELYEKLFGEELPELEPEDYKEEVEE 73 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHH-HHHHHHHHHHH-HHHHHhccccCCcccHHHHHHHHhh
Confidence 36899999999999999999999873 38999999999 99999999999 9999987 344322100 0
Q ss_pred C-----CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHH
Q psy15458 79 V-----NKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLA 150 (176)
Q Consensus 79 ~-----~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~ 150 (176)
+ ......++.++++.++..|+.....+..+... . .|+.....+. ..+.+..+-.+.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~---~----------~d~~~~~~~~-~l~~~E~~H~~~l~ 136 (139)
T cd01045 74 EPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEK---A----------EDPEVKKLFE-ELAEEERGHLRLLE 136 (139)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH---c----------CCHHHHHHHH-HHHHHHHHHHHHHH
Confidence 0 01245678999999999999999888877643 3 6676776665 35565555554444
No 22
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.62 E-value=3.3e-06 Score=61.42 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCC---------
Q psy15458 7 NLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQ--------- 77 (176)
Q Consensus 7 ~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~--------- 77 (176)
+.|+..+..|..+...|..+|..+. +.| |.+++.|...| .+|..|+..+. +.+..+++.+......
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~--~~~-p~~~~~f~~lA-~~E~~H~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~ 75 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAK--DEG-PELKELFRRLA-EEEQEHAKFLE-KLLRKLGPGEEPPFLEEKVEYSFFP 75 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HTT-HHHHHHHHHHH-HHHHHHHHHHH-HHHCHCSTTHHTHCHCCCCCHCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhh--hcc-cHHHHHHHHHH-HHHHHHHHHHH-HHHHhhccccCcchhhhhhhhhhcc
Confidence 4688999999999999999999998 467 99999999999 99999999999 9999887655432110
Q ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHH
Q psy15458 78 GVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYK 144 (176)
Q Consensus 78 ~~~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~ 144 (176)
.+....-.++..+++.++..|+.....+..+. ... .|+....+|. ....+.-.
T Consensus 76 ~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a---~~~----------~~~~~~~~~~-~l~~~E~~ 128 (137)
T PF02915_consen 76 KLEEETDENLEEALEMAIKEEKDAYEFYAELA---RKA----------PDPEIRKLFE-ELAKEEKE 128 (137)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHH---HHT----------TSHHHHHHHH-HHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHC----------CCHHHHHHHH-HHHHHHHH
Confidence 00011112588999999999999888888775 444 7777776765 24444433
No 23
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.49 E-value=2.5e-05 Score=60.08 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--------C
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYH--------H 75 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~--------~ 75 (176)
.+.+.||+.+..++.....|..+.-+-. ..++..+..+|..+. .++++|+..+. +++...||.|.-. .
T Consensus 22 ~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~-~~~~~~~D~iA-ERi~~lGg~p~~t~~e~~~~s~ 97 (162)
T PRK09448 22 ATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFR-TALEDHLDTMA-ERAVQLGGVALGTTQVVASKTP 97 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHH-HHHHHHhHHHH-HHHHHcCCCCCCCHHHHHHhCC
Confidence 4678999999999999988887666665 689999999999999 99999999999 9999999998632 2
Q ss_pred CCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHH
Q psy15458 76 HQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGM 152 (176)
Q Consensus 76 i~~~~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~ 152 (176)
|+..+. .+.+..++++..++.-..+...+++.+ .+. +|+.+.+.+. +++...-+.+-.|..+
T Consensus 98 i~e~~~-~~~~~~~~l~~l~~d~~~~~~~~r~~i---~e~----------~D~~T~dll~-~~~~~~eK~~WmL~a~ 159 (162)
T PRK09448 98 LKSYPL-DIHNVQDHLKALADRYAIVANDVRKAI---DEA----------GDEDTADIFT-AASRDLDKFLWFIEAH 159 (162)
T ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH---hhc----------CChhHHHHHH-HHHHHHHHHHHHHHHh
Confidence 332122 333668999999999999999999888 666 7887777776 3554444444444443
No 24
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=98.03 E-value=0.0009 Score=50.43 Aligned_cols=135 Identities=10% Similarity=0.075 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-----ccCC-
Q psy15458 3 HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTD-----YHHH- 76 (176)
Q Consensus 3 ~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~-----~~~i- 76 (176)
+++++.|-....-|+.+.|-|..++.... ...=.|...|...-- .|-+.|++.+. .+|-..||.+. +.+|
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~--Gle~e~~keiae~Ar-~E~r~H~e~i~-~Ri~elg~~~Prd~~~l~dIS 91 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALK--GLEGEGIKEIAEEAR-EEDRKHFELIA-PRIYELGGDLPRDMKKLHDIS 91 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCCCCchhHHHHHhhc
Confidence 36778888888999999999999988886 233344545554444 88899999999 99999999774 2333
Q ss_pred ---CCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy15458 77 ---QGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGML 153 (176)
Q Consensus 77 ---~~~~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l 153 (176)
+++-..+|.++.++++.+++-|+=....+.+|..+-. |+|+.| .+.-+ ..|.|.++-...+...+
T Consensus 92 gC~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T~-----GkDprT------yeLa~-~IL~eEi~hr~~~~~ll 159 (172)
T COG2406 92 GCKPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLTA-----GKDPRT------YELAE-AILREEIEHRTWFLELL 159 (172)
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHcccc-----CCCcch------HHHHH-HHHHHHHHHHHHHHHHh
Confidence 1222357889999999999999998888888875532 355555 33332 35677776655555444
No 25
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=97.92 E-value=0.0023 Score=48.91 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--------
Q psy15458 4 SCTNLMMQQVQKELNASLTYL-AMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYH-------- 74 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl-~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~-------- 74 (176)
++.+.||+++..= .-.|+ ...+++.=...++--+-.+|..+. .+-.++...+. ++++..||.|.-.
T Consensus 15 ~~~~~Ln~~lAd~---~~Ly~k~~~~HWnV~G~~F~~lHe~~ee~y-~el~~~~DeiA-ERi~~LGg~p~~t~~~~~~~s 89 (156)
T COG0783 15 KIAEALNQLLADL---YVLYLKTHNYHWNVKGPNFFALHEKLEELY-EELAEHVDEIA-ERIRALGGVPLGTLSEYLKLS 89 (156)
T ss_pred HHHHHHHHHHHHH---HHHHHHHhhcccceeCccHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCCcccHHHHHHhC
Confidence 4566666665432 22333 122333322456666788999999 99999999999 9999999988622
Q ss_pred CCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHH
Q psy15458 75 HHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYK 144 (176)
Q Consensus 75 ~i~~~~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~ 144 (176)
.|+..+ .+ .++.++++...+.-..+.+.+++.+..|.+. +|+.+.+++. +.+.+.-+
T Consensus 90 ~ike~~-~~-~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~----------gD~~Tadl~~-~~~~~~EK 146 (156)
T COG0783 90 SIKEEP-GD-YTAREMLKELVEDYEYLIKELRKGIELADEA----------GDEVTADLLT-DIIRELEK 146 (156)
T ss_pred CCcccC-CC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc----------CChhHHHHHH-HHHHHHHH
Confidence 133222 23 7899999999999999999999999999998 8888887765 34444333
No 26
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0059 Score=47.61 Aligned_cols=102 Identities=18% Similarity=0.106 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc---------
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYH--------- 74 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~--------- 74 (176)
.+..+|+..|..|..|..+|..+|..... +-+.+.|...+ .+|+.|...|- +.+-++++.....
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~~~~-----~~~rk~~~~la-~eE~~H~~~f~-~l~~~~~~~~~~~~~~~~~~~~ 96 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAERIED-----EEIRKLFEDLA-DEEMRHLRKFE-KLLEKLTPKEVSSEEEEGEIES 96 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----HhHHHHHHHHH-HHHHHHHHHHH-HHHHHhcCCccchhhhhcchhh
Confidence 57899999999999999999999999984 26899999999 99999999999 9999999877211
Q ss_pred ----CCCCC--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15458 75 ----HHQGV--NKMTWNSAAHAVQDALNLETQVTESIRKIIIECE 113 (176)
Q Consensus 75 ----~i~~~--~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~ 113 (176)
.++ | ....-.++.+++..|...|+...+.+..+.....
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~ 140 (176)
T COG1633 97 EILEYLQ-PGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELV 140 (176)
T ss_pred hhccccC-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 111 1 1122357899999999999999999998876654
No 27
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=97.70 E-value=0.002 Score=47.13 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC----ccc
Q psy15458 8 LMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN----KMT 83 (176)
Q Consensus 8 ~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~----~~~ 83 (176)
.+|+.++.|..+..+|..+|..... |...+.|...| ++|+.|+.-+- +++..+|+.|. .+-.+.- ...
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA-~~E~~H~~~~~-~~~~~~~~~~~-~~~~~~~~~~~l~~ 73 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLA-EDERRHAEFWK-KFLGKRGVPPP-RPKLKIFFYKLLAR 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHH-HHHHHHHHHHH-HHHhhccCCCC-CccHHHHHHHHHHH
Confidence 4789999999999999999999862 45999999999 99999999999 99999998774 1100000 011
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 84 WNSAAHAVQDALNLETQVTESIRKII 109 (176)
Q Consensus 84 ~~~~~~~~~~al~~Ek~v~~~l~~l~ 109 (176)
+.++..+++.+...|+.....+.++.
T Consensus 74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~ 99 (125)
T cd01044 74 IFGPTFVLKLLERGEERAIEKYDRLL 99 (125)
T ss_pred HHhHHHHHHHHHHhHHhhHhhHHhhh
Confidence 23345666777777777777777665
No 28
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.60 E-value=0.0037 Score=60.53 Aligned_cols=135 Identities=11% Similarity=0.082 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--ccc--c--CC
Q psy15458 3 HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNL--TDY--H--HH 76 (176)
Q Consensus 3 ~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~--~~~--~--~i 76 (176)
.+..+.|.-.|.+|-.+-.+|..+|.... =+.+.++|...| .+|.+|...|. +....--.. -.+ . .+
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA-~eE~~H~~~l~-~~~~~~~~~~~~~~~~~~~~~ 931 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFA-GMEQEHMATLA-RRYHAAAPSPTEGFKIERAAI 931 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHH-HHHHHHHHHHH-HHHhhccCCcccccccchhhh
Confidence 35578899999999999999999998864 478999999999 99999999998 776421000 000 0 00
Q ss_pred CCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChh-hhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy15458 77 QGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYH-LSDWLTGEFLDEQYKGQRKLAGMLST 155 (176)
Q Consensus 77 ~~~~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~-~~~~l~~~fleeQ~~~i~~l~~~l~~ 155 (176)
.......+.++.++++.|+..|++...-+.++.+. . .|+. ...++. .+.+|+-+-++.|...+..
T Consensus 932 ~~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~---~----------~d~e~~k~l~~-~LA~EEk~Hl~~L~~~~d~ 997 (1006)
T PRK12775 932 MAGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAE---T----------PDGSVERQLYK-ELAAEEREHVALLTTEFER 997 (1006)
T ss_pred hhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhh---C----------CChHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 00101234568999999999999999999888644 3 6654 456665 5889999999999999999
Q ss_pred Hhh
Q psy15458 156 MRK 158 (176)
Q Consensus 156 l~~ 158 (176)
++.
T Consensus 998 ~~~ 1000 (1006)
T PRK12775 998 WKQ 1000 (1006)
T ss_pred Hhc
Confidence 875
No 29
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=97.55 E-value=0.0056 Score=47.24 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcc
Q psy15458 3 HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKM 82 (176)
Q Consensus 3 ~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~ 82 (176)
..+++-|-+...-|-.+...|+.||.... ..|+|.+|+.|+..| .+|..||..+. +.+...+ .
T Consensus 3 ~~t~~~L~~aF~GEs~a~~rY~~~A~~A~--~eG~~~va~lfr~iA-~~E~~HA~~~~-~~l~~~~-------------~ 65 (166)
T COG1592 3 METEENLRKAFAGESMAVMRYLIFAKVAE--EEGYPEIARLFRAIA-EAEAVHAKNHL-KLLGKLL-------------L 65 (166)
T ss_pred chHHHHHHHHhcchHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH-HHHHHHHHHHH-HHhcccc-------------c
Confidence 45678888899999999999999999999 479999999999999 99999999999 7775444 2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHH-HHHHHHhhc
Q psy15458 83 TWNSAAHAVQDALNLETQVTESIR-KIIIECEQG 115 (176)
Q Consensus 83 ~~~~~~~~~~~al~~Ek~v~~~l~-~l~~~a~~~ 115 (176)
.+.++.+-++.++.-|..-...+. .....|...
T Consensus 66 ~~~~~~eNl~~aieGE~~e~~emyp~~ae~A~~~ 99 (166)
T COG1592 66 VLGDTRENLEEAIEGETYEITEMYPVFAEVAEEE 99 (166)
T ss_pred ccccHHHHHHHHHccchHHHHHhChHHHHHHHHc
Confidence 345677888888888777555544 677778877
No 30
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=96.96 E-value=0.037 Score=41.37 Aligned_cols=127 Identities=10% Similarity=0.151 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCC-CCcccc
Q psy15458 6 TNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQG-VNKMTW 84 (176)
Q Consensus 6 ~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~-~~~~~~ 84 (176)
++.||+.|.....+..-|-..+...+ -|.+..+|.+.+ .+-..|+..|- .++...||.|.-..-.. .-...|
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~-~~~~~~~~eL~-~~v~~lGg~p~~~gs~~g~lhr~w 74 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIA-GEKSAIVSELQ-QVVASLGGKPEDHGSMVGSLHQFW 74 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCCCCCCCCcHHHHHHHHH
Confidence 67899999999999999999888765 378999999999 99999999999 99999999887432111 111235
Q ss_pred ccHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy15458 85 NSAAH---------AVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLST 155 (176)
Q Consensus 85 ~~~~~---------~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~ 155 (176)
.++.. +++.+..-|..+.+.+.+...-. . -++.+.. .|..|...++.--+.+..
T Consensus 75 ~~lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~--~----------l~~~~r~-----~l~~q~~~i~~~~d~i~~ 137 (139)
T TIGR02284 75 GKIRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQ--D----------TPAAARD-----VALRQYPGVRACHDVIRA 137 (139)
T ss_pred HHHHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcC--C----------CChHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 54433 45566666777777776665221 1 2344443 567777777666665554
Q ss_pred H
Q psy15458 156 M 156 (176)
Q Consensus 156 l 156 (176)
|
T Consensus 138 l 138 (139)
T TIGR02284 138 L 138 (139)
T ss_pred c
Confidence 4
No 31
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=96.80 E-value=0.0088 Score=42.59 Aligned_cols=97 Identities=8% Similarity=0.063 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCC-CCcc
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQG-VNKM 82 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~-~~~~ 82 (176)
++++.||+.+.....+...|-..+.-+. + |.+..+|.+.+ .+...|+..|- .++...||.|.-..-.. ....
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~--~---~~lk~~f~~~~-~~~~~~~~~L~-~~i~~~Gg~p~~~gs~~g~~~r 73 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAE--D---PELKSLFQEFA-QERQQHAEELQ-AEIQELGGEPEESGSFKGALHR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----S---HHHHHHHHHHH-HHHHHHHHHHH-HHHHHTT--H----HHCHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC--C---HHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCcCcccCHHHHHHH
Confidence 4688999999999999999999999997 2 88999999999 99999999999 99999999997433110 1112
Q ss_pred ccccHHH---------HHHHHHHHHHHHHHHHHH
Q psy15458 83 TWNSAAH---------AVQDALNLETQVTESIRK 107 (176)
Q Consensus 83 ~~~~~~~---------~~~~al~~Ek~v~~~l~~ 107 (176)
.|.++.. +++.+..-|+.+...+..
T Consensus 74 ~~~~ik~~~~~~d~~aiL~~~~~gE~~~~~~y~~ 107 (111)
T PF09537_consen 74 AWMDIKSALGGDDDEAILEECERGEDMALEAYED 107 (111)
T ss_dssp TTTHHHHS-----H--------------------
T ss_pred HHHHHHHHhcCCCccchhhhhhhhhhhhhhhccc
Confidence 3444333 455555555555555444
No 32
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=96.57 E-value=0.098 Score=40.39 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC-------cccccc
Q psy15458 14 QKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN-------KMTWNS 86 (176)
Q Consensus 14 ~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~-------~~~~~~ 86 (176)
.-|+.|..+|...+..+.. |.+..++.+.+ .+|..|-..|- +.+..+|++|.+-...... ......
T Consensus 10 AGE~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~-~~E~~Hl~~f~-~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G 82 (165)
T cd01042 10 AGEVGAVRIYRGQLAVARD-----PAVRPLIKEML-DEEKDHLAWFE-ELLPELGVRPSLLLPLWYVAGFALGALTALLG 82 (165)
T ss_pred cchHHHHHHHHHHHHHhCC-----HHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 3589999999998888862 99999999999 99999999999 9999999999865511000 001123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHH
Q psy15458 87 AAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKG 145 (176)
Q Consensus 87 ~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~ 145 (176)
..-++.+..+.|..|...|++-++.-... .|+.+.+.|+ .|.++..+-
T Consensus 83 ~~~a~~~~~avE~~V~~Hy~~ql~~L~~~----------~d~~l~~~l~-~~r~DE~~H 130 (165)
T cd01042 83 KKAAMACTAAVETVVEEHYNDQLRELPAQ----------PDKELRAIIE-QFRDDELEH 130 (165)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------CCHHHHHHHH-HHHHHHHHH
Confidence 44578888899999999999866555443 4888888887 477666643
No 33
>PF13668 Ferritin_2: Ferritin-like domain
Probab=96.45 E-value=0.22 Score=36.53 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcC---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC-CCCCCc
Q psy15458 6 TNLMMQQVQKELNASLTYLAMGVHFSRD---CVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHH-HQGVNK 81 (176)
Q Consensus 6 ~~~Ln~qi~~El~as~~Yl~ma~~f~~~---~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~-i~~~~~ 81 (176)
.+.||-.++.|.-...+|..-+.-+... ...=+....+|+..+ ..|..|+..|- +.+. |+.+...+ +. .+.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~E~~H~~~l~-~~l~--g~~~~~~~~~~-~~~ 77 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIA-DQEQGHVDFLQ-AALE--GGRPVPPPAYD-FPF 77 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHH-HHHHHHHHHHH-HHhc--CCCCCCCCccc-ccc
Confidence 3679999999999999999888755311 123356788999999 99999999999 8887 76664111 11 112
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 82 MTWNSAAHAVQDALNLETQVTESIRKIIIEC 112 (176)
Q Consensus 82 ~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a 112 (176)
+.+.+..+.+..|+..|......+..+....
T Consensus 78 ~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~ 108 (137)
T PF13668_consen 78 DPFTDDASFLRLAYTLEDVGVSAYKGAAPQI 108 (137)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999887544
No 34
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=95.45 E-value=0.73 Score=34.12 Aligned_cols=95 Identities=16% Similarity=0.081 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCc-----
Q psy15458 7 NLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNK----- 81 (176)
Q Consensus 7 ~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~----- 81 (176)
+.|.-.+..|..+-.+|..++..+. ...-|...+ ..|..|...+. ..+...|. +.......+..
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la-~~E~~H~~~l~-~L~~~~~~-~~p~~~~~~~~f~~~~ 71 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIA-ESEQRHMDALK-TLLERYGL-PDPVDPFSGGVFTNPQ 71 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHH-HHHHHHHHHHH-HHHHHcCC-CCCCCccccccccchh
Confidence 5788899999999999999999883 456677889 99999999888 66655553 32111111111
Q ss_pred ------cccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 82 ------MTWNSAAHAVQDALNLETQVTESIRKIIIEC 112 (176)
Q Consensus 82 ------~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a 112 (176)
....|..++++.+...|+.-..-+.++...+
T Consensus 72 ~~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~ 108 (135)
T cd01048 72 YNQLVEQGPKSLQDALEVGVLIEELDIADYDRLLERT 108 (135)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2234789999999999999888888876444
No 35
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=94.30 E-value=2 Score=33.41 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcc--
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKM-- 82 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~-- 82 (176)
+...|.--=.-|+.|..+|-.....+.. .|.+..++.+.. ++|..|-..+- +.+..+|.+|.+-. |.-.
T Consensus 3 i~r~lRVdHAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~-~~E~~Hl~~f~-~~l~~~~~RpS~l~---Plw~~~ 73 (172)
T PF03232_consen 3 IARILRVDHAGEVGAVRIYRGQLAVARR----DPELRPFLKEMA-EEEKDHLAWFE-QLLPELRVRPSLLN---PLWYVA 73 (172)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHH-HHHHHHHHHHH-HHhHHcCCCCcHHH---HHHHHH
Confidence 3445555567799999999999888862 789999999999 99999999999 99999999988654 2100
Q ss_pred --------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHH
Q psy15458 83 --------TWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQ 146 (176)
Q Consensus 83 --------~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i 146 (176)
..-...-++-+.-+.|..|.+.+++-++.-.... ...|+.+.+.|. .|-++..+--
T Consensus 74 g~~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~-------~~~d~~l~~~i~-~~r~DE~~H~ 137 (172)
T PF03232_consen 74 GFALGALTALLGDKAAMACTAAVETVVEEHYNDQLRELPAMG-------EEEDPELRAIIE-QFRDDELEHR 137 (172)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------ccchHHHHHHHH-HHHHHHHHHH
Confidence 1112345667777889999999988666655310 007888888887 5777666443
No 36
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=91.97 E-value=1.2 Score=36.08 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC
Q psy15458 9 MMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHH 75 (176)
Q Consensus 9 Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~ 75 (176)
|...|..|+...-.||..+.-.+ +..+. ..+.-.+..+ .|||-|..... +-++..||.|.+..
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~-~~~~~-~~~~~i~~V~-~eEMlHl~l~~-Nll~alGg~P~l~~ 63 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIK-PGTNE-EARNLIRSVA-IEEMLHLSLAA-NLLNALGGSPRLTS 63 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS--TTSH--HHHHHHHHH-HHHHHHHHHHH-HHHHHTT-------
T ss_pred CcHHHHHHHHHHHHHHHHHcccC-CCcch-hHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCCcccc
Confidence 56789999999999997666654 22222 2888999999 99999999999 99999999998763
No 37
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=90.18 E-value=2 Score=31.21 Aligned_cols=59 Identities=8% Similarity=0.025 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 3 HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLT 65 (176)
Q Consensus 3 ~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~ 65 (176)
+++.+.|...+..|...+-.|-.++..+. ..|....+.||+... ..|..|+.++- +.+.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~--~egd~~~~~~~~~~~-~~E~~H~~~~~-~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAK--AEGLDEAHDFFHEAA-KDEARHGKMLK-GLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHH--HcCCHHHHHHHHHHH-HHHHHHHHHHH-HHHh
Confidence 45778899999999999999999999998 589999999999999 99999999987 6553
No 38
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=88.80 E-value=3 Score=30.46 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 3 HSCTNLMMQQVQKELN-ASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLT 65 (176)
Q Consensus 3 ~~~~~~Ln~qi~~El~-as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~ 65 (176)
..+...|...+..|.. +.-.|-.++..+. ..+-...+.+|.... .+|..|+..|- +.+.
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~--~e~d~~~~~~f~~i~-~~E~~H~~~l~-~~l~ 131 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAE--EEGFKEAARSFEAIA-EAEKVHAERYK-KALE 131 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHH-HHHHHHHHHHH-HHhh
Confidence 3567889999999996 7799999999999 589999999999999 99999999987 6553
No 39
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=87.79 E-value=10 Score=28.76 Aligned_cols=130 Identities=13% Similarity=0.082 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCC------
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQG------ 78 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~------ 78 (176)
.+..|.+....|-+..-.+-.|+.-.. . |.+..-|..+. .+.+.|..++- .-+...|+.|.-..-+.
T Consensus 6 ~~~~L~d~y~aE~q~~~~l~~~~~~a~----~-~~L~~~l~~h~-~eT~~q~~rLe-~~~~~lg~~p~~~~c~~~~gl~~ 78 (159)
T PF05974_consen 6 FIDELRDLYSAEKQLLKALPKLAEAAS----S-PELKAALEEHL-EETEQQIERLE-QIFEALGADPSAEKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-S----S-HHHHHHHHHHH-HHHHHHHHHHH-HHHHHTTS-S-CHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC----C-HHHHHHHHHHH-HHHHHHHHHHH-HHHHHccCCCccCcchHHHHHHH
Confidence 477899999999999999999998876 3 99999999999 99999999999 99999999886322000
Q ss_pred ----CCcc--ccccHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHH
Q psy15458 79 ----VNKM--TWNSAAHA--VQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLA 150 (176)
Q Consensus 79 ----~~~~--~~~~~~~~--~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~ 150 (176)
.... .-+.+.++ +-.+...|..-...+..++..|... +++...+.|.. -++|....-..|.
T Consensus 79 e~~~~~~~~~~d~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~l----------G~~e~a~lL~~-~L~EE~~~~~~L~ 147 (159)
T PF05974_consen 79 EAQELIEEFAEDPAVKDAALIAAAQKVEHYEIAAYGTLIALAKQL----------GDEEAAQLLEQ-NLDEEEAADEKLT 147 (159)
T ss_dssp HHHHHHHT-S-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------T-HHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHHH-HHHHHHHHHHHHH
Confidence 0000 01123333 3577788999999999999999999 88888877763 4444444444444
Q ss_pred HH
Q psy15458 151 GM 152 (176)
Q Consensus 151 ~~ 152 (176)
.+
T Consensus 148 ~~ 149 (159)
T PF05974_consen 148 QL 149 (159)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 40
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=84.36 E-value=7 Score=29.11 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~ 60 (176)
...+.|...+..|-.+...|..++.... =+.....|...+ .+|..|...|-
T Consensus 101 ~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~-~eE~~H~~~L~ 151 (154)
T cd07908 101 SIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRII-LDEKLHIKILE 151 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4567999999999999999999999654 378899999999 99999998886
No 41
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=84.02 E-value=7.6 Score=28.80 Aligned_cols=58 Identities=9% Similarity=-0.052 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLT 65 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~ 65 (176)
.+...|...++.|-.+...|..++..+. ..+-+..+.||.... .++.+|...+- +++.
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~A~--~~~D~~~~~~l~~~l-~~q~e~~~~~~-~~l~ 137 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDLAL--EEKDYATFNFLQWFV-KEQVEEEALAR-DILD 137 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHhHHHHHHHHH-HHHHHHHHHHH-HHHH
Confidence 5678999999999999999999999998 468899999999888 99989998887 7776
No 42
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=82.22 E-value=12 Score=26.44 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~ 60 (176)
....++.-.+..|-.+...|..++..+. -|...+.|...+ .+|..|...|-
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~l~-~~E~~H~~~l~ 134 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARKAP-----DPEIRKLFEELA-KEEKEHEDLLE 134 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT-----SHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3577888899999999999999998875 478899999999 99999999886
No 43
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=81.60 E-value=13 Score=26.20 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~ 60 (176)
...+.|...+..|-.+.-.|-.++..+. =+.....|...+ .+|..|...+-
T Consensus 86 ~~~~~l~~a~~~E~~~~~~Y~~~~~~~~-----d~~~~~~~~~l~-~~E~~H~~~l~ 136 (139)
T cd01045 86 DPLEALRLAIEIEKDAIEFYEELAEKAE-----DPEVKKLFEELA-EEERGHLRLLE 136 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4578899999999999999999998765 236889999999 99999999886
No 44
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=77.17 E-value=25 Score=25.61 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=49.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q psy15458 86 SAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRK 158 (176)
Q Consensus 86 ~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~ 158 (176)
.+.+.|...++.|......+...+..+... +.+.+..||+ +...+..+-...++..+..+..
T Consensus 6 ~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~----------~f~~l~~~~~-~~~~ee~~Had~laEri~~lGg 67 (148)
T cd01052 6 ELIELLNKAFADEWLAYYYYTILAKHVKGP----------EGEGIKEELE-EAAEEELNHAELLAERIYELGG 67 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------chHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCC
Confidence 477899999999999999999998887765 6677888887 4666777777778887776654
No 45
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=77.09 E-value=25 Score=27.25 Aligned_cols=57 Identities=12% Similarity=0.031 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 3 HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTM 66 (176)
Q Consensus 3 ~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~ 66 (176)
.....+|-..|..|-.++-+|.-++..-. =++..+.|...+ ..|..|+..+. .+++.
T Consensus 112 ~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~-----~~~~~~~~~~~a-~~E~~H~~~l~-~~~~~ 168 (176)
T COG1633 112 VSYLEAIEAAMEAEKDTIEFYEELLDELV-----NEEAKKLFKTIA-DDEKGHASGLL-SLYNR 168 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHH-HHHHHHHHHHH-HHHHH
Confidence 45678999999999999999998887765 356888999999 99999999998 76654
No 46
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=75.77 E-value=24 Score=25.79 Aligned_cols=61 Identities=16% Similarity=0.000 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q psy15458 86 SAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMR 157 (176)
Q Consensus 86 ~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~ 157 (176)
.+.+.+..+++.|......+...+..+... +-+.+..||.. ...+..+-...+++.+..+.
T Consensus 5 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~----------~~~~~~~~f~~-~a~ee~~Ha~~lae~i~~lG 65 (153)
T cd00907 5 KVIEALNKALTGELTAINQYFLHARMLEDW----------GLEKLAERFRK-ESIEEMKHADKLIERILFLE 65 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------ChHHHHHHHHH-HHHHHHHHHHHHHHHHHHcC
Confidence 478899999999999999999998888765 66678888763 55555566667777766554
No 47
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=74.97 E-value=22 Score=23.77 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSY 63 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~y 63 (176)
....|-..+..|-.+...|..++..+. -+....+|.... .+|..|+..+. ++
T Consensus 78 ~~~~l~~~~~~E~~~~~~y~~~~~~~~-----d~~~~~~~~~~~-~~E~~H~~~~~-~~ 129 (130)
T cd00657 78 PAEALRAALEVEARAIAAYRELIEQAD-----DPELRRLLERIL-ADEQRHAAWFR-KL 129 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHH-HHHHHHHHHHH-hh
Confidence 346777789999999999999998875 467899999999 99999999887 54
No 48
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=73.24 E-value=24 Score=29.37 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHH---HHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy15458 2 VHSCTNLMMQQV---QKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNL 70 (176)
Q Consensus 2 ~~~~~~~Ln~qi---~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~ 70 (176)
++...++|.+|+ .-|+.++.+|+..+.-|. + +++-..+..-+ -||..|.+.+. ..|+.....
T Consensus 18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r----~-~~~~dll~DI~-TEEl~HlEmva-t~I~~L~~g 82 (277)
T COG3546 18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR----D-AKYKDLLMDIG-TEELSHLEMVA-TMINLLNKG 82 (277)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC----c-hHHHHHHHHhh-HHHHHHHHHHH-HHHHHHhcC
Confidence 355677888887 479999999999988886 4 78999999999 99999999988 887765543
No 49
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=72.27 E-value=23 Score=26.95 Aligned_cols=34 Identities=9% Similarity=-0.040 Sum_probs=27.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q psy15458 36 NRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLT 71 (176)
Q Consensus 36 ~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~ 71 (176)
-+..++.||+..| .-|.++|..|- +.-..-.+.+
T Consensus 15 ~~~e~~~f~keRa-~iE~eYak~L~-kLak~~~~~~ 48 (191)
T cd07610 15 LLKDLREFLKKRA-AIEEEYAKNLQ-KLAKKFSKKP 48 (191)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhhccc
Confidence 3457999999999 99999999999 7776655544
No 50
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=69.82 E-value=25 Score=22.20 Aligned_cols=56 Identities=13% Similarity=0.289 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy15458 7 NLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGN 69 (176)
Q Consensus 7 ~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg 69 (176)
..++..++.+=.++..|...+.-+. =|.+-..|.... .+...++..+. +|+.++|=
T Consensus 4 ~i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~-~~~~~~~~~l~-~~m~~kGw 59 (64)
T PF07875_consen 4 DIANDLLNSEKAAARNYATAALECA-----NPELRQILQQIL-NECQQMQYELF-NYMNQKGW 59 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCC
Confidence 3467778888889999998888776 378999999999 99999999999 99999984
No 51
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=68.67 E-value=65 Score=26.53 Aligned_cols=64 Identities=23% Similarity=0.102 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCC
Q psy15458 6 TNLMMQQVQKELNASLTYLAMGVHFSRDCVNRP-GFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHH 76 (176)
Q Consensus 6 ~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~-g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i 76 (176)
..+|..-.+.|++|...++-...-|. .++| .|-.=|.+.+ .+|-.|...+. +++...|... .+.
T Consensus 68 ~~llHaiAhIE~~AIdLa~Da~~RF~---~~lP~~f~~D~~~va-~dEarHf~ll~-~rL~~lG~~y--Gd~ 132 (253)
T PF04305_consen 68 AALLHAIAHIELNAIDLALDAIYRFH---PNLPREFYDDWLRVA-DDEARHFRLLR-ERLEELGSDY--GDL 132 (253)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHh---ccCCHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCCCC--CCc
Confidence 45677778899999999999999993 2555 4555555789 99999999999 9999999644 454
No 52
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=63.13 E-value=48 Score=23.00 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q psy15458 87 AAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTE 160 (176)
Q Consensus 87 ~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~~ 160 (176)
.++.+...+.........+......| .|+.+..+|. ++..+-...+.+|..+|..+..-.
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~~-------------~~~~lk~~f~-~~~~~~~~~~~~L~~~i~~~Gg~p 61 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEKA-------------EDPELKSLFQ-EFAQERQQHAEELQAEIQELGGEP 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------SHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-------------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCc
Confidence 45677777777777777777665444 7788988887 688888888888888887776433
No 53
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=63.07 E-value=79 Score=25.48 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=26.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy15458 36 NRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNL 70 (176)
Q Consensus 36 ~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~ 70 (176)
....|+.||++.+ .=|.+||..|. +....-.+.
T Consensus 20 ~~ke~~~FlkkRa-~iEeeYak~L~-KLak~~~~~ 52 (234)
T cd07652 20 SAKEFATFLKKRA-AIEEEHARGLK-KLARTTLDT 52 (234)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHhh
Confidence 3457999999999 99999999999 766554433
No 54
>PRK10635 bacterioferritin; Provisional
Probab=62.09 E-value=59 Score=24.65 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 3 HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLT 65 (176)
Q Consensus 3 ~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~ 65 (176)
+.+...|..-+..|..+.-.|-.+..+|. ..+=+.-..+|...- .+|-+|+..+- ..+.
T Consensus 81 ~~v~eml~~dl~~E~~ai~~y~e~i~~a~--~~~D~~s~~ll~~iL-~dEe~H~~~le-~~l~ 139 (158)
T PRK10635 81 EDVEEMLRSDLRLELEGAKDLREAIAYAD--SVHDYVSRDMMIEIL-ADEEGHIDWLE-TELD 139 (158)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHH-HHHHHHHHHHH-HHHH
Confidence 46788999999999999999999999998 367777889999998 99999999887 5553
No 55
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=61.84 E-value=19 Score=28.00 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy15458 7 NLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGN 69 (176)
Q Consensus 7 ~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg 69 (176)
-.|+.....+=.|.-.+-.|++.+. ..|++-+..|+.... ..|..|-.-|+ .||...++
T Consensus 78 ~~ld~~AAl~SaSWG~fQIMGfn~~--~~Gy~sv~~fv~am~-~se~~Ql~af~-~Fi~~~~~ 136 (175)
T PF11860_consen 78 RALDEEAALESASWGLFQIMGFNWK--ALGYASVEEFVEAMC-ESEAAQLDAFV-RFIKANPA 136 (175)
T ss_pred HhhCHHHHHHHhhhhHHHHHHHHHH--HcCCCCHHHHHHHHH-hCHHHHHHHHH-HHHHcCHH
Confidence 4567777888888899999999998 699999999999999 99999999999 99977553
No 56
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.57 E-value=50 Score=32.53 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTM 66 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~ 66 (176)
..++|.-.|..|-.+..+|..+|..-... ....++|...+ +||++|...|- +.+..
T Consensus 942 ~~~al~lAm~~Ekdai~fY~~la~~~~d~----e~~k~l~~~LA-~EEk~Hl~~L~-~~~d~ 997 (1006)
T PRK12775 942 PGNLFRIAIEFERRAVKFFKERVAETPDG----SVERQLYKELA-AEEREHVALLT-TEFER 997 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCh----HHHHHHHHHHH-HHHHHHHHHHH-HHHHH
Confidence 46789999999999999999999987621 23578999999 99999999999 66543
No 57
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=60.72 E-value=56 Score=22.96 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTM 66 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~ 66 (176)
++...|...+..|-.....|..+...+. ..+=+..+.|+.... .++-.|...+- +++..
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~a~--~~~D~~t~~~~~~~l-~~~~~~~~~l~-~~l~~ 138 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKLAE--KEGDPETADFLDEFL-EEEEKHIWMLQ-AHLTN 138 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTSHHHHHHHHHHH-HHHHHHHHHHH-HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHH-HHHHHHHHHHH-HHHHH
Confidence 6788999999999999999999999998 357789999998888 99999988888 77754
No 58
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=58.09 E-value=1.1e+02 Score=25.65 Aligned_cols=104 Identities=11% Similarity=0.144 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC----
Q psy15458 3 HSCTNLMMQQVQ---KELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHH---- 75 (176)
Q Consensus 3 ~~~~~~Ln~qi~---~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~---- 75 (176)
+...++|.+|+. -|+.++.+|+..+.-|.. .. .+...+..-+ -||..|.+.+. .-|.+.-.-.....
T Consensus 19 P~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~--~~--~~kdlL~dIa-tEEl~H~Emva-t~I~~Ll~g~~~~~~~~~ 92 (283)
T PF05067_consen 19 PRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRG--PE--KYKDLLMDIA-TEELGHVEMVA-TMIAQLLKGAPPEEQEEA 92 (283)
T ss_dssp HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SS--TT--TTHHHHHHHH-HHHHHHHHHHH-HHHHHHHTSSTTSSHHHH
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCC--ch--HHHHHHHHHH-HHHHHHHHHHH-HHHHHHcCCCCcchhhhh
Confidence 455667777774 699999999999999973 22 2358899999 99999999987 76665433211000
Q ss_pred -------------------CC---C--CC---cccc--------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 76 -------------------HQ---G--VN---KMTW--------NSAAHAVQDALNLETQVTESIRKIIIEC 112 (176)
Q Consensus 76 -------------------i~---~--~~---~~~~--------~~~~~~~~~al~~Ek~v~~~l~~l~~~a 112 (176)
|. . |. -..| +++.--|...+..|....-.+..|+..+
T Consensus 93 ~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mT 164 (283)
T PF05067_consen 93 APGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMT 164 (283)
T ss_dssp HGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred cccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 0 00 0123 3577888889999999888888888654
No 59
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=58.00 E-value=1.2e+02 Score=26.08 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcccc
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTW 84 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~ 84 (176)
.++-|-+-...|+.....|--|+.-.+ ..-|-++..|.-.| .+|..||=-+= +=+.+-|-.+++.-+.+..+-+|
T Consensus 80 FidFLerScTaEFSGflLYKEl~rrlk---~~nP~lae~F~lMa-RDEARHAGFlN-kam~df~l~lDLgfLtk~rkYTf 154 (351)
T CHL00185 80 FVEFLERSCTAEFSGFLLYKELSRKLK---DKNPLLAEGFLLMS-RDEARHAGFLN-KAMSDFNLSLDLGFLTKSRKYTF 154 (351)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhc---cCCcHHHHHHHHHh-hhhHHHhhhHH-HHHHHcCccccchhhccCCceee
Confidence 567788889999999999999999997 34688999999999 99999998777 88889998898888776666677
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15458 85 NSAAHAVQDALNLETQVTESIRKIIIECEQG 115 (176)
Q Consensus 85 ~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~ 115 (176)
-.|.=+|=+..-.||----++=.|++.-++.
T Consensus 155 F~PkfI~YAtYLSEKIGYwRYItIyRHLe~~ 185 (351)
T CHL00185 155 FSPKFIFYATYLSEKIGYWRYITIYRHLEKN 185 (351)
T ss_pred ecccceehhhHHHhhhhhhHHhHHHHHHHhC
Confidence 7788888899999999888888899888877
No 60
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=56.89 E-value=1.3e+02 Score=25.99 Aligned_cols=106 Identities=14% Similarity=0.062 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcccc
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTW 84 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~ 84 (176)
.++-|-+-...|+.....|--|+.-.+ ..-|-++..|.-.| .+|..||=-+= +=+.+-|-.+++.-+.+..+-+|
T Consensus 80 FidFLerSctaEFSGflLYKEl~rrlk---~~nP~lae~F~lMa-RDEARHAGFlN-kam~Df~l~lDLgfLtk~rkYTf 154 (357)
T PLN02508 80 FIEFLERSCTAEFSGFLLYKELGRRLK---KTNPVVAEIFTLMS-RDEARHAGFLN-KALSDFNLALDLGFLTKNRKYTF 154 (357)
T ss_pred HHHHHHhhhhhhcccchHHHHHHHhcc---cCChHHHHHHHHhC-chhHHHHhHHH-HHHHHcCccccchhhcccCceee
Confidence 567778888999999999999999987 35688999999999 99999998777 88889998888888776656667
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15458 85 NSAAHAVQDALNLETQVTESIRKIIIECEQG 115 (176)
Q Consensus 85 ~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~ 115 (176)
-.|.=++=+..-.||----++=.|++.-++.
T Consensus 155 F~PkfIfYAtYLSEKIGYwRYItIyRHLe~~ 185 (357)
T PLN02508 155 FKPKFIFYATYLSEKIGYWRYITIYRHLQAN 185 (357)
T ss_pred eCcceeehhhHhhhhhhhhhHhHHHHHHHhC
Confidence 7778888888889999888888898888876
No 61
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=55.81 E-value=1.3e+02 Score=25.66 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCccc
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMT 83 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~ 83 (176)
..++-|-+-...|+.....|--|+.-.+ ..-|-++..|.-.| .+|..||=-+= +=+.+-|-.+++.-+.+..+-+
T Consensus 63 ~FidFLerSctaEFSGflLYKEl~rrlk---~~nP~lae~F~lMa-RDEARHAGFlN-kam~df~l~lDLgfLtk~r~YT 137 (323)
T cd01047 63 IFLEFLERSCTSEFSGFLLYKELGRRLK---NTNPVVAELFRLMA-RDEARHAGFLN-KALSDFNLALDLGFLTKTRKYT 137 (323)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHcc---cCCcHHHHHHHHHh-hhHHHHhhhHH-HHHHHcCcccchhhhccCCcee
Confidence 3467788888999999999999999997 34788999999999 99999998777 8888889888888877665666
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15458 84 WNSAAHAVQDALNLETQVTESIRKIIIECEQG 115 (176)
Q Consensus 84 ~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~ 115 (176)
|-.|.=++=+..-.||----++=.|++.-++.
T Consensus 138 fF~PkfI~YatYLSEKIGYwRYItIyRHLe~~ 169 (323)
T cd01047 138 FFKPKFIFYATYLSEKIGYWRYITIYRHLERN 169 (323)
T ss_pred eeCccceeehhHhhhhhhhHHHHHHHHHHHhC
Confidence 77778888888889999888888888888776
No 62
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=55.72 E-value=56 Score=21.45 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCccccccHHHHHHHHHHH
Q psy15458 37 RPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNL 97 (176)
Q Consensus 37 l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~~~~~~~~~~al~~ 97 (176)
+.-+..||++.| .-|.++|.+|- +-.... .... ++....+++..++...+..
T Consensus 25 ~~~~~~f~~~Ra-~iE~eYak~L~-kL~~~~---~~~~----~~~~~~~s~~~aw~~~~~e 76 (87)
T smart00055 25 LEDLKKFIRERA-KIEEEYAKKLQ-KLSKKL---RAVR----DTESEYGSLSKSWEVLLSE 76 (87)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHhh---hccC----CCCCcchhHHHHHHHHHHH
Confidence 456899999999 99999999999 766541 1111 1123455555666655544
No 63
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=54.75 E-value=1.3e+02 Score=25.39 Aligned_cols=117 Identities=19% Similarity=0.122 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCC----
Q psy15458 4 SCTNLMMQQVQKELNASLTYL-AMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQG---- 78 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl-~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~---- 78 (176)
....+|---.-.| .+.-.|. .++.+|..++..-+++++|..... .||-.|+.-|- +|+..-| .+....+..
T Consensus 59 ~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~Wt-aEE~rHg~aL~-~YL~~sg-~vdp~~le~~~~~ 134 (297)
T cd01050 59 DARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWT-AEENRHGDLLN-KYLYLTG-RVDPRALERTRQY 134 (297)
T ss_pred HHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHh-HHHHHHHHHHH-HHHHHhC-CCCHHHHHHHHHH
Confidence 3334444444444 3344454 446666543334478999999999 99999999999 9998853 343222110
Q ss_pred ----C-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhh
Q psy15458 79 ----V-NKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLT 135 (176)
Q Consensus 79 ----~-~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~ 135 (176)
. ....-.++...|-...-.|+...-.++++.+.|. . +||.+...+.
T Consensus 135 ~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~-~----------gdPvL~~i~~ 185 (297)
T cd01050 135 LIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG-A----------GDPVLAKLLG 185 (297)
T ss_pred HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc-C----------CChHHHHHHH
Confidence 0 0001134567788888889998888999999887 6 8886555444
No 64
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=54.68 E-value=91 Score=23.56 Aligned_cols=59 Identities=20% Similarity=0.095 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy15458 2 VHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMR 67 (176)
Q Consensus 2 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~r 67 (176)
+.++...|...|..|-.|...|..++...+ + |++-.-+.... .+|..|...|- +.+...
T Consensus 97 ~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--D---p~v~~~l~~I~-~rE~~H~~~f~-~~l~~~ 155 (156)
T cd01051 97 SGNLVADLRSNIAAESRARLTYERLYEMTD--D---PGVKDTLSFLL-VREIVHQNAFG-KALESL 155 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHH-HHHHHHHHHHH-HHHHhc
Confidence 346778899999999999999999999876 2 67777777788 99999999998 877543
No 65
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=54.50 E-value=1.1e+02 Score=24.64 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=52.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc
Q psy15458 37 RPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIE-CEQG 115 (176)
Q Consensus 37 l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~~~~~~~~~~al~~Ek~v~~~l~~l~~~-a~~~ 115 (176)
...++.||+..+ .=|...|.+|. +.-..-+|. | +.+++..++.....- ++.+-.+|.. +...
T Consensus 21 ~~el~~fl~ERa-~IEe~Yak~L~-klak~~~~~--------~---e~Gtl~~sw~~~~~e----~E~~a~~H~~la~~L 83 (233)
T cd07649 21 QKEMAEFIRERI-KIEEEYAKNLS-KLSQSSLAA--------Q---EEGTLGEAWAQVKKS----LADEAEVHLKFSSKL 83 (233)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHhhhcCC--------C---CCChHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 457999999999 99999999999 775432221 1 345555555444332 2222222221 1111
Q ss_pred CCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy15458 116 TNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKT 159 (176)
Q Consensus 116 ~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~ 159 (176)
.+- ...=|. .|.++|.+..+++.+.+.++.+.
T Consensus 84 ----------~~e-v~~~l~-~f~~~~~k~~k~~e~~~~k~~K~ 115 (233)
T cd07649 84 ----------QSE-VEKPLL-NFRENFKKDMKKLDHHIADLRKQ 115 (233)
T ss_pred ----------HHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111122 36667777777777777766543
No 66
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=54.32 E-value=86 Score=23.13 Aligned_cols=93 Identities=13% Similarity=0.093 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCC-CCCcccccc
Q psy15458 8 LMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQ-GVNKMTWNS 86 (176)
Q Consensus 8 ~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~-~~~~~~~~~ 86 (176)
+|...+.-|..+.|.|=..+.+..- ....--.... .+.|.....+. ..+..+|+.|.....- .+ ....++
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~------~~r~~~~~~~-~~HR~rRd~l~-~~l~~~g~~~p~~~aaY~l-P~~v~d 71 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDG------DRRAAARAAL-AAHRARRDALA-AALRAAGATPPPPEAAYQL-PFPVTD 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-G------GGHHHHHHHH-HHHHHHHHHHH-HHHHHTT-------SS----SS---S
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCCCCCCCCCCC-CCCCCC
Confidence 4778899999999999999999862 2344445556 67778888899 9999999887644310 01 124577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 87 AAHAVQDALNLETQVTESIRKII 109 (176)
Q Consensus 87 ~~~~~~~al~~Ek~v~~~l~~l~ 109 (176)
+..+.+.+..+|..+......+.
T Consensus 72 ~~sa~~la~~lE~~~a~aw~~lv 94 (131)
T PF14530_consen 72 PASAAALAAALEDDCAAAWRALV 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999987
No 67
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=53.86 E-value=1.5e+02 Score=25.70 Aligned_cols=135 Identities=12% Similarity=0.107 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcccc
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTW 84 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~ 84 (176)
.++-|-+-...|+.....|--|+.-.+. . =|-++..|.-.| ..|..||=-+= +=+.+-|-.+++.-+.+..+-+|
T Consensus 84 FidFLerSctaEFSGflLYKEl~rrlk~--~-nP~lae~F~lMa-RDEARHAGFlN-kam~df~l~lDLgfLtk~k~YTf 158 (355)
T PRK13654 84 FIDFLERSCTAEFSGFLLYKELSRRLKD--R-NPLLAELFQLMA-RDEARHAGFLN-KAMKDFGLSLDLGFLTKKKKYTF 158 (355)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhccc--c-CcHHHHHHHHHh-hhHHHHhhhHH-HHHHHcCccccchhhccCCceee
Confidence 5677888899999999999999999983 2 489999999999 99999998777 88889998998888776656667
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy15458 85 NSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTM 156 (176)
Q Consensus 85 ~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l 156 (176)
-.|.=+|=+..-.||----++=.|++.-++. -|..+--.+. |.++=...+..=|+...-|
T Consensus 159 F~PkfIfYatYLSEKIGYwRYItIyRHLe~~----------Pe~r~~PIF~--~Fe~WCqDEnRHGd~F~~l 218 (355)
T PRK13654 159 FPPKFIFYATYLSEKIGYWRYITIYRHLEKH----------PEHRFHPIFK--FFENWCQDENRHGDFFALL 218 (355)
T ss_pred eCcceeeehhHhHhhhhHHHHHHHHHHHHhC----------cccccCchHH--HHHHHhcccchhHHHHHHH
Confidence 7777888888889999999998999888877 5554433332 4444444455555555444
No 68
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=53.49 E-value=94 Score=23.36 Aligned_cols=130 Identities=8% Similarity=0.026 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCC------
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQG------ 78 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~------ 78 (176)
.+..|.+....|-++.-.-=.|+. ....|-+..-|..+. .+-+.|..+|- +=+...|..|.-..-+.
T Consensus 4 f~~~L~d~y~aE~Q~~~al~~m~~-----~a~~peLk~~l~~H~-~eT~~qi~rLe-~if~~lg~~~~~~~c~~m~gli~ 76 (147)
T cd07909 4 FVHELRDLYSAEKQLVKALPKMAK-----AATSEELKEAFESHL-EETEGQVERLE-QIFESLGEKPEGKKCKAMEGLIK 76 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCCccCcchHHHHHHH
Confidence 356777777777777776666662 357899999999999 99999999999 88888998876333100
Q ss_pred -----CCccccccHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHHHHHHHHH
Q psy15458 79 -----VNKMTWNSAAHAV--QDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAG 151 (176)
Q Consensus 79 -----~~~~~~~~~~~~~--~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~~i~~l~~ 151 (176)
.....-+.+.++. -.+...|..-..++..|+..|... ++......|+ +=+++++....
T Consensus 77 e~~~~~~~~~~~~v~Da~li~aaq~vEHyEIA~YgtL~~~A~~l----------G~~e~a~lL~-----~~L~EE~~~d~ 141 (147)
T cd07909 77 EAEELIEETGDSAVLDAALIAAAQKVEHYEIAGYGTLRALAKLL----------GLDDAADLLQ-----ETLDEEKATDR 141 (147)
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCHHHHHHHH-----HHHHHHHHHHH
Confidence 0001123456766 788888999999999999999998 7776666654 44445555666
Q ss_pred HHHHH
Q psy15458 152 MLSTM 156 (176)
Q Consensus 152 ~l~~l 156 (176)
.|+.+
T Consensus 142 ~lt~l 146 (147)
T cd07909 142 KLTDL 146 (147)
T ss_pred HHHhh
Confidence 55543
No 69
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=51.33 E-value=30 Score=22.81 Aligned_cols=29 Identities=14% Similarity=-0.030 Sum_probs=24.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 36 NRPGFAKFSSRVLVRSGGEHAIKFSSSYLTM 66 (176)
Q Consensus 36 ~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~ 66 (176)
-...++.||++.+ .-|.++|..|- +.-..
T Consensus 24 ~~~~l~~~~keRa-~lE~~Yak~L~-kl~~~ 52 (91)
T PF00611_consen 24 LLEELASFFKERA-SLEEEYAKSLQ-KLAKK 52 (91)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHH-HHHHH
Confidence 3457999999999 99999999998 65544
No 70
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=51.05 E-value=70 Score=25.96 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy15458 37 RPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGN 69 (176)
Q Consensus 37 l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg 69 (176)
..-++.||+..| .-|.++|..|. +....-.+
T Consensus 21 ~~el~~f~keRa-~IEe~Yak~L~-kLakk~~~ 51 (261)
T cd07648 21 VKELADFLRERA-TIEETYSKALN-KLAKQASN 51 (261)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhcC
Confidence 457999999999 99999999999 87765444
No 71
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.47 E-value=76 Score=25.92 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 38 PGFAKFSSRVLVRSGGEHAIKFSSSYLT 65 (176)
Q Consensus 38 ~g~a~~f~~~s~~ee~~hA~~l~~~yl~ 65 (176)
.-|+.||+..| .=|..+|..|. +.-.
T Consensus 22 kel~~flkeRa-~IEe~Yak~L~-klak 47 (261)
T cd07674 22 KELADFVRERA-AIEETYSKSMS-KLSK 47 (261)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH-HHHh
Confidence 45899999999 99999999999 7773
No 72
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=47.07 E-value=1.9e+02 Score=24.89 Aligned_cols=106 Identities=15% Similarity=0.068 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcccc
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTW 84 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~ 84 (176)
.++-|-+-...|+.....|--|+.-.+ ..=|-++..|.-.| .+|..||=-+= +=+.+-|-.+++.-+.+..+-+|
T Consensus 74 FidFLerScTaEFSGflLYKEl~rrlk---~~~P~lae~F~~Ma-RDEARHAGFlN-kam~df~l~lDLgfLtk~r~YTf 148 (337)
T TIGR02029 74 FIEFLERSCTSEFSGFLLYKELSRRLK---NRDPVVAELFQLMA-RDEARHAGFLN-KALGDFGLALDLGFLTKTRKYTF 148 (337)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhcC---CCChHHHHHHHHHh-hhhHHHhhhHH-HHHHHcCcccchhhhccCCceee
Confidence 567788889999999999999999997 24466999999999 99999998777 88889998888888776655667
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy15458 85 NSAAHAVQDALNLETQVTESIRKIIIECEQG 115 (176)
Q Consensus 85 ~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~ 115 (176)
-.|.=++=+..-.||----++=.|++.-++.
T Consensus 149 F~PkfI~YAtYLSEKIGYwRYItIyRHLe~~ 179 (337)
T TIGR02029 149 FRPKFIYYATYLSEKIGYWRYITIYRHLEEN 179 (337)
T ss_pred eccceeehhhHhHhhhhhHHHHHHHHHHHhC
Confidence 6778888888889999888888898888876
No 73
>PRK13456 DNA protection protein DPS; Provisional
Probab=43.55 E-value=1.6e+02 Score=23.18 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLT 65 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~ 65 (176)
.+...|...+.-|-.|.-.|-.+-.++. +.+--...-... -- .+|.+|+..|. +++.
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~--~kDp~T~~l~~~-IL-~dE~eH~~dl~-~lL~ 163 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTA--GKDPRTYDLALA-IL-QEEIEHEAWFS-ELLG 163 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccHHHHHHH-HH-HHHHHHHHHHH-HHHh
Confidence 5889999999999999999999999998 455554444444 55 78889999999 9884
No 74
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=42.58 E-value=59 Score=22.16 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=33.9
Q ss_pred Cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCccccccHHHHHHHHHH
Q psy15458 36 NR-PGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALN 96 (176)
Q Consensus 36 ~l-~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~~~~~~~~~~al~ 96 (176)
.+ |+|++....++ ..=..-+.+++ +.+..+++.+...+...+ ...|..+.++....|+
T Consensus 21 s~dp~f~~~ld~~s-~rll~l~n~ll-~~~~~~~~~~~~~~~~d~-d~~~~~vvd~~D~LlE 79 (91)
T PF08066_consen 21 SFDPEFAESLDEQS-QRLLSLINSLL-KSAGSKSNISSPDDVDDV-DERWDSVVDVNDSLLE 79 (91)
T ss_pred HhhHHHHHHHHHHH-HHHHHHHHHHH-HhccccccccCCCccccH-HHHHHHHHHHHHHHHH
Confidence 57 89999999999 76666666666 666555544432211111 1246655555544443
No 75
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=42.25 E-value=1.4e+02 Score=22.09 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLT 65 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~ 65 (176)
.+.+.|...+..|-.++..|-.+...+. ..+=++...+|.... .+|-+|+..+- .++.
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~~A~--~~~D~~t~~ll~~~i-~eee~h~~~l~-~~l~ 139 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIAYAE--EVRDYVSRDLLEEIL-EDEEEHIDWLE-TQLE 139 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHH-HHHHHHHHHHH-HHHH
Confidence 5668899999999999999999998887 477899999999999 99999999887 6664
No 76
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=42.01 E-value=1.1e+02 Score=25.17 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy15458 38 PGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGN 69 (176)
Q Consensus 38 ~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg 69 (176)
..|+.|++..| .=|.++|..|. +....-++
T Consensus 29 kel~~f~keRa-~iEe~Yak~L~-kLak~~~~ 58 (269)
T cd07673 29 KELSDFIRERA-TIEEAYSRSMT-KLAKSASN 58 (269)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHH-HHHhhhcc
Confidence 45889999999 99999999999 87765443
No 77
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=40.35 E-value=1.8e+02 Score=22.81 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLT 71 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~ 71 (176)
.....|-++.+-|..|+..=++|-+.|- ..+++..-+-..+ .||+.|-++.+ +.+..||...
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~La-rEEL~HFeqV~-~im~~Rgi~l 79 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLA-REELQHFEQVL-KIMKKRGIPL 79 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHH-HHHHHHHHHHH-HHHHHcCCCC
Confidence 3456788999999999999998877775 5689999999999 99999999999 9999999644
No 78
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=39.12 E-value=2.5e+02 Score=24.14 Aligned_cols=113 Identities=14% Similarity=0.094 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCc---CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCC-----
Q psy15458 9 MMQQVQKELNASLTYLAMGVHFSR---DCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN----- 80 (176)
Q Consensus 9 Ln~qi~~El~as~~Yl~ma~~f~~---~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~----- 80 (176)
+-..|..+-=-+|. ..++.+|.. +.....+.++|..... -||-.||.-|- +|+.-.| .+....+...-
T Consensus 67 v~~llTEd~LPsY~-~~l~~~~~~~~~~ga~~~~W~~wv~~WT-AEEnRHg~~L~-~YL~vsg-~vDp~~lE~~r~~~i~ 142 (330)
T PF03405_consen 67 VGNLLTEDNLPSYH-RELATLFGVRDEDGASDSPWGRWVGRWT-AEENRHGDALR-DYLYVSG-RVDPVALERTRMYLIT 142 (330)
T ss_dssp HHHHHHHHTHHHHH-HHHTTSTTT--SSSS--SHHHHHHHHHH-HHHHHHHHHHH-HHHHHCT-SS-CCCCCHCCHHHHH
T ss_pred HHHHHhhhhhhHHH-HHHHhhcCccccCCCCCCcHHHHccccc-ccccccHHHHH-HHHHHhC-CCCHHHHHHHHHHHHh
Confidence 33444444333332 234555553 1112456899999999 99999999999 9997655 34333322110
Q ss_pred ---cccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhh
Q psy15458 81 ---KMTW-NSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLT 135 (176)
Q Consensus 81 ---~~~~-~~~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~ 135 (176)
...+ .++...|-.+.-.|+...-+..++.++|... +||.+...+.
T Consensus 143 ~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~----------~DpvL~~il~ 191 (330)
T PF03405_consen 143 AGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQA----------GDPVLAQILG 191 (330)
T ss_dssp H----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------TSHHHHHHHH
T ss_pred cCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CChHHHHHHH
Confidence 0122 3567788888888998888889999999887 8886555444
No 79
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=37.46 E-value=2.4e+02 Score=23.40 Aligned_cols=88 Identities=9% Similarity=-0.005 Sum_probs=53.2
Q ss_pred HHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc--cCC---CCCCccccccHHHHHHHHHH
Q psy15458 22 TYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDY--HHH---QGVNKMTWNSAAHAVQDALN 96 (176)
Q Consensus 22 ~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~--~~i---~~~~~~~~~~~~~~~~~al~ 96 (176)
++--+..|....--=+..+.+|+++.+ .-|.+.|..|- +-...-.++... .+. ..+...-|....+....+=.
T Consensus 6 Q~~~L~~~~~~~~~~le~~~~f~k~R~-~iE~eYa~~L~-~L~k~~~~k~~~~~~~e~~~~~~~~s~~~~~~e~~~~a~Q 83 (263)
T cd07678 6 QLSILQTKQQRDAELLEDIRSYSKQRA-AIEREYGQALQ-RLASQFLKRDWHRGGNETEMDRSVRTVWGAWREGTAATGQ 83 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHccccCCCCchhhhhccccchHHHHHHHHHHHHHH
Confidence 444556666543345679999999999 99999998876 544443332210 000 01112346667777777777
Q ss_pred HHHHHHHHHHHHHHH
Q psy15458 97 LETQVTESIRKIIIE 111 (176)
Q Consensus 97 ~Ek~v~~~l~~l~~~ 111 (176)
+|....+.+..++..
T Consensus 84 ~~~~~~~~~~~~~~e 98 (263)
T cd07678 84 GRVTRLEAYRRLRDE 98 (263)
T ss_pred HHHHHHHHHHhhhhh
Confidence 777766666555443
No 80
>PRK10304 ferritin; Provisional
Probab=37.38 E-value=1.8e+02 Score=22.06 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHH---HHHHHHHHHHHHHHHcC
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRS---GGEHAIKFSSSYLTMRG 68 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~e---e~~hA~~l~~~yl~~rG 68 (176)
.+.+.+...+..|...+-.|..+...|.. .+=+....|+...- .| |-.|+..++ ..+..-|
T Consensus 82 s~~e~~~~~l~~E~~vt~~i~~l~~~A~~--~~D~~t~~fl~~fl-~EQveEe~~~~~l~-~~l~~~~ 145 (165)
T PRK10304 82 SLDELFQETYKHEQLITQKINELAHAAMT--NQDYPTFNFLQWYV-SEQHEEEKLFKSII-DKLSLAG 145 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHH-HHHHHHHHHHHHHH-HHHHhhC
Confidence 56788999999999999999999999984 34444444444444 44 888999999 8877665
No 81
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=36.21 E-value=2.1e+02 Score=24.79 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=45.2
Q ss_pred hcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CcccccCCCCCCccccccHHHHHHHHHHHHHHHHHHH
Q psy15458 29 HFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRG---NLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESI 105 (176)
Q Consensus 29 ~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rG---g~~~~~~i~~~~~~~~~~~~~~~~~al~~Ek~v~~~l 105 (176)
+|.+ .--++|+++-...-+ .+|.-|..-.. .-++..- -.|.+..+ ....-..+.+++..|.+.|++-+..+
T Consensus 218 ~l~~-~g~m~g~~~~i~~I~-RDE~lH~~~~~-~l~~~l~~~~e~p~~~~~---~~~~~~~v~~l~~eave~E~~~~~~l 291 (376)
T PRK09101 218 AFAE-RELMEGNAKIIRLIA-RDEALHLTGTQ-HMLNLMRSGKDDPEMAEI---AEECKQECYDLFVQAAEQEKEWADYL 291 (376)
T ss_pred HHhh-CCCCccHHHHHHHHH-HHHHHHHHHHH-HHHHHHhhcccChhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 356899999999999 99999986554 3332221 11111110 01112458899999999999977755
Q ss_pred H
Q psy15458 106 R 106 (176)
Q Consensus 106 ~ 106 (176)
.
T Consensus 292 ~ 292 (376)
T PRK09101 292 F 292 (376)
T ss_pred c
Confidence 3
No 82
>PF09570 RE_SinI: SinI restriction endonuclease; InterPro: IPR019070 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease SinI, which recognises and cleaves the double-stranded sequence G^GWCC. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=35.46 E-value=2.3e+02 Score=22.71 Aligned_cols=119 Identities=14% Similarity=0.098 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcc
Q psy15458 4 SCTNLMMQQVQKELNASLTYL-AMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKM 82 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl-~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~ 82 (176)
++.+...+.|+.+|..+++-+ .+...|....-+..|=. +.. ....++-..++..|...|..+. +.||..
T Consensus 7 e~a~~~~d~~~~sl~~kf~~l~~fls~~pd~~sn~R~k~----~~~-v~~~e~i~~~a~~Y~~~r~~r~-----p~~p~T 76 (221)
T PF09570_consen 7 EIAKQKMDDIEPSLSEKFTELIKFLSDFPDLLSNWRGKK----RPS-VATEEYIEKLANAYFEGRSPRK-----PLPPTT 76 (221)
T ss_pred HHHHHhhcccCHHHHHHHHHHHHHHcCChhhcccccccc----CCc-cchHHHHHHHHHHHhcCccccC-----CCCCCC
Confidence 334444455667777666655 44444431111111111 333 4456677777766765544332 223332
Q ss_pred cccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCChhhhhhhhhhhHHHHHH
Q psy15458 83 TWNS-AAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHLSDWLTGEFLDEQYK 144 (176)
Q Consensus 83 ~~~~-~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~~~~~d~~~~~D~~~~~~l~~~fleeQ~~ 144 (176)
.-+. +-.+++.+...-++..+.+..-|.++... . --....|+ +||.++++
T Consensus 77 vpDE~vs~i~~~~~~~s~e~l~~i~~~HrlsM~a----------E-NivG~LLE-rYL~~~Le 127 (221)
T PF09570_consen 77 VPDEMVSVIMNASFGYSQEDLELIKEGHRLSMAA----------E-NIVGALLE-RYLAEVLE 127 (221)
T ss_pred CChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----------H-HHHHHHHH-HHHHHHhc
Confidence 2222 23455666666666777788777777653 2 23555565 57777664
No 83
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.17 E-value=1e+02 Score=18.82 Aligned_cols=30 Identities=17% Similarity=0.029 Sum_probs=25.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 34 CVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLT 65 (176)
Q Consensus 34 ~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~ 65 (176)
+.-+||.|......+ ..|.+|-..+- +-.+
T Consensus 10 e~i~Pg~aerI~~ma-e~eq~hR~~~e-~~~l 39 (50)
T PF10097_consen 10 EQILPGAAERIFAMA-EKEQEHRHELE-KKAL 39 (50)
T ss_pred HhHCcCHHHHHHHHH-HHHHHHHHHHH-HHHH
Confidence 356899999999999 99999999987 5443
No 84
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=34.78 E-value=2.6e+02 Score=22.98 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCC---------------------------------------chhHHHHH
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVN---------------------------------------RPGFAKFS 44 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~---------------------------------------l~g~a~~f 44 (176)
.+...|-++.+-|..|+.+=++|-.-|..+..+ .+.+..-+
T Consensus 27 nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~M 106 (240)
T PF06175_consen 27 NLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDKM 106 (240)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHH
Confidence 456788999999999999888774444322111 12333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccc
Q psy15458 45 SRVLVRSGGEHAIKFSSSYLTMRGNLTD 72 (176)
Q Consensus 45 ~~~s~~ee~~hA~~l~~~yl~~rGg~~~ 72 (176)
-..+ .||+.|-++.+ +-+..||....
T Consensus 107 s~La-rEEL~HFeqVl-~im~~RGi~l~ 132 (240)
T PF06175_consen 107 SRLA-REELHHFEQVL-EIMKKRGIPLG 132 (240)
T ss_dssp HHHH-HHHHHHHHHHH-HHHHHTT----
T ss_pred HHHH-HHHHHHHHHHH-HHHHHcCCCCC
Confidence 5678 99999999999 99999997553
No 85
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=33.44 E-value=2.6e+02 Score=24.18 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhc--CcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cccccCCCCCCccccccHHHHHHHH
Q psy15458 18 NASLTYLAMGVHF--SRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGN-LTDYHHHQGVNKMTWNSAAHAVQDA 94 (176)
Q Consensus 18 ~as~~Yl~ma~~f--~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg-~~~~~~i~~~~~~~~~~~~~~~~~a 94 (176)
...+.|-+.+..+ .+ .--+||++.-++--+ .+|.-|..-.+ ..++..-. .|.+.. + ..-..+.++++.|
T Consensus 214 EGi~FysgFa~~~~l~r-~g~M~G~~~~i~~I~-RDE~~H~~f~~-~l~~~l~~e~p~~~~---~--~~~~~v~~l~~ea 285 (369)
T PRK07209 214 EGIFFYVGFTQILSLGR-QNKMTGIAEQYQYIL-RDESMHLNFGI-DLINQIKLENPHLWT---A--EFQAEIRELIKEA 285 (369)
T ss_pred HHHHHHHHHHHHHHhhh-cCCcccHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHhCccccc---H--HHHHHHHHHHHHH
Confidence 4444554444443 44 356899999999999 99999997665 55544321 111100 0 1124578999999
Q ss_pred HHHHHHHHHHH
Q psy15458 95 LNLETQVTESI 105 (176)
Q Consensus 95 l~~Ek~v~~~l 105 (176)
++.|++....+
T Consensus 286 v~~E~~~~~~~ 296 (369)
T PRK07209 286 VELEYRYARDT 296 (369)
T ss_pred HHHHHHHHHHH
Confidence 99998865543
No 86
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=33.43 E-value=1.8e+02 Score=20.68 Aligned_cols=45 Identities=13% Similarity=-0.006 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 7 NLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64 (176)
Q Consensus 7 ~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl 64 (176)
..+.-.+..|-.+...|..++.. -..+.+.+ .+|..|...|. +.+
T Consensus 79 ~~l~~~~~~E~~ai~~Y~~~~~~-----------~~~~~~Ii-~dE~~H~~~L~-~~~ 123 (125)
T cd01044 79 FVLKLLERGEERAIEKYDRLLEE-----------RPELKEII-ADELEHEEVLI-ALL 123 (125)
T ss_pred HHHHHHHHhHHhhHhhHHhhhhh-----------hHHHHHHH-HHHHHHHHHHH-Hhh
Confidence 45566678888888888877766 23667889 99999999998 765
No 87
>KOG2297|consensus
Probab=33.34 E-value=2.9e+02 Score=23.96 Aligned_cols=87 Identities=8% Similarity=0.035 Sum_probs=58.0
Q ss_pred HHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-----------ccCCCCCC--ccccccHHHHHH
Q psy15458 26 MGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTD-----------YHHHQGVN--KMTWNSAAHAVQ 92 (176)
Q Consensus 26 ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~-----------~~~i~~~~--~~~~~~~~~~~~ 92 (176)
.+.||- +.|+..+..|-+.+.+...+..-++-+ .=+..+|..+. -.+||.+. .-.|+++..+.+
T Consensus 229 Fak~Ft--~agL~elvey~~~q~~~~a~kElq~~L-~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsave 305 (412)
T KOG2297|consen 229 FAKYFT--DAGLKELVEYHRNQQSEGARKELQKEL-QEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVE 305 (412)
T ss_pred HHHHHh--HhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHh
Confidence 477887 689999999999777566666666665 44555554332 11233222 236999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy15458 93 DALNLETQVTESIRKIIIECEQG 115 (176)
Q Consensus 93 ~al~~Ek~v~~~l~~l~~~a~~~ 115 (176)
=.-+.|....+.++.+-..|.-.
T Consensus 306 WnKkeelva~qalrhlK~yaPLL 328 (412)
T KOG2297|consen 306 WNKKEELVAEQALRHLKQYAPLL 328 (412)
T ss_pred hchHHHHHHHHHHHHHHhhhHHH
Confidence 88666777777788777666543
No 88
>PRK05685 fliS flagellar protein FliS; Validated
Probab=33.29 E-value=94 Score=22.72 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=27.1
Q ss_pred cccHHHHHHHHHHHHH--HHHHHHHHHHHHHhhc
Q psy15458 84 WNSAAHAVQDALNLET--QVTESIRKIIIECEQG 115 (176)
Q Consensus 84 ~~~~~~~~~~al~~Ek--~v~~~l~~l~~~a~~~ 115 (176)
...++.-|..+|++|+ ++...+..||..+...
T Consensus 61 a~~Ii~eL~~sLd~e~ggeiA~~L~~LY~y~~~~ 94 (132)
T PRK05685 61 AINIINGLRNSLDMEKGGEVAKNLSALYDYMIRR 94 (132)
T ss_pred HHHHHHHHHhhcCCccccHHHHHHHHHHHHHHHH
Confidence 3467888999999998 9999999999888764
No 89
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.39 E-value=2.9e+02 Score=22.83 Aligned_cols=62 Identities=19% Similarity=0.055 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q psy15458 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLT 71 (176)
Q Consensus 5 ~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~ 71 (176)
-...|......||+|.+.=|-.+.-|. .+.+. |-+=+.+.+ .||-.|-.-+- +.+...|-..
T Consensus 76 ~aallHAiAHIEfNAInLaLDa~~RF~--~~p~~-F~~dWm~VA-~EE~~HF~Ll~-~~L~~LG~~Y 137 (268)
T COG2833 76 RAALLHAIAHIEFNAINLALDAVYRFA--PLPLQ-FYDDWMRVA-DEEAKHFRLLR-ERLKSLGYDY 137 (268)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhc--CCcHH-HHHHHHHHH-HHHHHHHHHHH-HHHHHhCCCc
Confidence 356677778899999999999999998 45555 334445678 99999998888 9999999654
No 90
>KOG4061|consensus
Probab=31.76 E-value=2.6e+02 Score=22.13 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCC-C---Cc---cccccH
Q psy15458 15 KELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQG-V---NK---MTWNSA 87 (176)
Q Consensus 15 ~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~-~---~~---~~~~~~ 87 (176)
-||.|-++|--.-+... ..-++.-..+.= ++|-+|-..|- +++.++..+|.+-.... . .. ..--+.
T Consensus 59 GElGAdrIYaGQ~avL~-----~~~vgpvi~hmW-dqEk~Hl~tf~-~l~~k~rVrpT~l~P~w~vagfalGaGTALlg~ 131 (217)
T KOG4061|consen 59 GELGADRIYAGQMAVLQ-----GTSVGPVIKHMW-DQEKEHLKTFE-NLALKHRVRPTVLTPLWNVAGFALGAGTALLGK 131 (217)
T ss_pred cccccchhhhchhhhhc-----CCCchhHHHHHH-HHHHHHHHHHH-HHHHHccCCchhhhhHHHHHHHHhccchhhhCh
Confidence 58888888873323332 222777777888 89999999999 99999998887543100 0 00 011135
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHh
Q psy15458 88 AHAVQDALNLETQVTESIRK-IIIECE 113 (176)
Q Consensus 88 ~~~~~~al~~Ek~v~~~l~~-l~~~a~ 113 (176)
..++.+..+.|.-+-..++. |..++.
T Consensus 132 eaAMACT~AVEtvIg~HYNdQlr~l~~ 158 (217)
T KOG4061|consen 132 EAAMACTEAVETVIGGHYNDQLRELAE 158 (217)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 67888888888888877776 444444
No 91
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=31.72 E-value=2.8e+02 Score=22.44 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=23.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 37 RPGFAKFSSRVLVRSGGEHAIKFSSSYLTM 66 (176)
Q Consensus 37 l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~ 66 (176)
+..+.+|++..| .-|.+.|.+|- +-..+
T Consensus 21 Le~i~~F~reRa-~iE~EYA~~L~-~L~kq 48 (237)
T cd07657 21 LETMKKYMAKRA-KSDREYASTLG-SLANQ 48 (237)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHh
Confidence 457899999999 99999999998 65544
No 92
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=31.27 E-value=2.7e+02 Score=22.15 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC
Q psy15458 14 QKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHH 75 (176)
Q Consensus 14 ~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~ 75 (176)
.-|+.|-..|.-.+.+... -.+.. -.++.+ ++|-.|--.+- ++++.||.+|.+-+
T Consensus 51 aGE~~A~~iY~GQ~~~~r~---~~~R~--~l~em~-d~E~~HL~~f~-~~l~e~~vRPsll~ 105 (204)
T COG2941 51 AGELGAQAIYQGQAAVARS---PEPRI--QLKEMA-DEEIDHLAWFE-QRLLELGVRPSLLN 105 (204)
T ss_pred hhHHHHHHHHhhHHHHHcC---cchHH--HHHHHH-HHHHHHHHHHH-HHHHHccCCccHHH
Confidence 3599999999988888873 23333 778888 99999999999 99999999998765
No 93
>PF02561 FliS: Flagellar protein FliS; InterPro: IPR003713 The fliD operon of several bacteria consists of three flagellar genes, fliD, fliS, and fliT, and is transcribed in this order []. In Bacillus subtilis the operon encoding the flagellar proteins FliD, FliS, and FliT is sigma D-dependent [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum; PDB: 1VH6_A 3IQC_B 3K1I_B 1ORJ_B 1ORY_A.
Probab=30.37 E-value=90 Score=22.28 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=26.0
Q ss_pred cccHHHHHHHHHHHH--HHHHHHHHHHHHHHhhc
Q psy15458 84 WNSAAHAVQDALNLE--TQVTESIRKIIIECEQG 115 (176)
Q Consensus 84 ~~~~~~~~~~al~~E--k~v~~~l~~l~~~a~~~ 115 (176)
..+++..|..+|+.| -++...+..||..+...
T Consensus 55 a~~Ii~~L~~~Ld~e~g~eia~~L~~lY~y~~~~ 88 (122)
T PF02561_consen 55 AQDIITELQSSLDFEKGGEIADNLFRLYDYMIRQ 88 (122)
T ss_dssp HHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 345778888899998 78999999999887654
No 94
>KOG2969|consensus
Probab=27.41 E-value=3e+02 Score=22.15 Aligned_cols=75 Identities=13% Similarity=0.118 Sum_probs=44.0
Q ss_pred HHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCcccccCCCCCCccccccHHHHHHHHHHHHHH
Q psy15458 25 AMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMR----GNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQ 100 (176)
Q Consensus 25 ~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~r----Gg~~~~~~i~~~~~~~~~~~~~~~~~al~~Ek~ 100 (176)
+|-+.|. .-+.|-|..||..+. .+| +|++-- --.+.+++|+ +...-.+++..+-.-|++-+.
T Consensus 81 ~mia~~g--a~n~~~ffh~~~a~m---------eli-kfqlvdka~rl~eg~~pdi~--~q~~lpslehLilkRLe~dk~ 146 (264)
T KOG2969|consen 81 LMIALFG--AGNMDLFFHFFLAQM---------ELI-KFQLVDKALRLLEGHLPDIP--EQSGLPSLEHLILKRLEGDKD 146 (264)
T ss_pred hHHHhcC--CCCccHHHHHHHHHH---------HHH-HHHHHHHHHHhhcCcCCCCC--cccCCchHHHHHHHHHhcCCc
Confidence 4556676 357778888887776 344 444321 1122233332 222345677777777777777
Q ss_pred HHHHHHHHHHHHh
Q psy15458 101 VTESIRKIIIECE 113 (176)
Q Consensus 101 v~~~l~~l~~~a~ 113 (176)
+-..+-+++.+|.
T Consensus 147 IggHL~elia~~a 159 (264)
T KOG2969|consen 147 IGGHLPELIAICA 159 (264)
T ss_pred hhhhHHHHHHHHh
Confidence 7777777776664
No 95
>KOG2364|consensus
Probab=27.25 E-value=72 Score=27.99 Aligned_cols=55 Identities=24% Similarity=0.132 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q psy15458 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTD 72 (176)
Q Consensus 1 ~~~~~~~~Ln~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~ 72 (176)
|++.+++-+-+-+..|+.|+ |-+|+..+. +++| .+ ..=|+||..++ .-++.|.+.
T Consensus 40 ~~~~~~~e~~~kv~~~~~a~--yd~~s~vla---~~lP--------~~-l~lRe~a~w~l---~~~~~G~~~ 94 (433)
T KOG2364|consen 40 MDQAMIDEVGEKVQEELSAL--YDSMSFVLA---LNLP--------VG-LTLREIAVWRL---RPDFNGTLA 94 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhh--hhhhheeeE---EeCC--------cc-hhHHHHHHHHh---hHHhcCCCc
Confidence 56788899999999999999 999999997 8898 23 44567777666 234445443
No 96
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=26.99 E-value=2.4e+02 Score=20.22 Aligned_cols=51 Identities=18% Similarity=0.115 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccCCCCCCccccccHHHHHHHHHHHHHHHHHHHH
Q psy15458 50 RSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIR 106 (176)
Q Consensus 50 ~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~~~~~~~~~~al~~Ek~v~~~l~ 106 (176)
.++..+|.+=|.+|+-.-| ...... ...++++++.|+.|-..-+.+++.+-
T Consensus 26 PkdY~~aykeIqkYlw~~g-~t~~~~-----~~Il~~iLelfE~aaadgk~v~dv~G 76 (111)
T COG4817 26 PKDYYTAYKEIQKYLWKSG-PTGWNE-----MKILGNILELFEEAAADGKEVTDVLG 76 (111)
T ss_pred cHHHHHHHHHHHHHHHHcC-cchhHH-----HHHHHHHHHHHHHHHhccccHHHHhc
Confidence 4677788888878998888 221111 11577889999988888888777654
No 97
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=26.15 E-value=2.7e+02 Score=23.02 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCccccccHHHHHHHHHH
Q psy15458 37 RPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALN 96 (176)
Q Consensus 37 l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~~~~~~~~~~al~ 96 (176)
...+..||+..| .=|...|.+|. +.-..-+|.+... | .++++..++...+.
T Consensus 21 C~el~~f~~eRA-~IE~~YAk~L~-~lakk~~~~~e~g----~---eyGTL~~sw~~~~~ 71 (258)
T cd07681 21 CNDLVSCFQERA-KIEKGYAQQLS-DWARKWRGIVEKG----P---QYGTLEKAWHAFLT 71 (258)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHhHHHhhhcc----c---ccChHHHHHHHHHH
Confidence 357899999999 99999999999 8776655555411 2 35555555554444
No 98
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=25.19 E-value=3.5e+02 Score=22.68 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=44.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcccccCCCCCCccc-cccHHHHHHHHHHHHHHHHHHHHH
Q psy15458 35 VNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTM-RGNLTDYHHHQGVNKMT-WNSAAHAVQDALNLETQVTESIRK 107 (176)
Q Consensus 35 ~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~-rGg~~~~~~i~~~~~~~-~~~~~~~~~~al~~Ek~v~~~l~~ 107 (176)
--+||++.-.+.-+ .+|.-|..-.. .-++. +...+ . ....+ -..+.++++.|++.|++....+..
T Consensus 182 g~m~g~~~~i~~I~-RDE~~H~~f~~-~l~~~l~~e~~---~---~~~~~~~~~v~~l~~~ave~E~~~~~~~~~ 248 (324)
T PRK09614 182 GKMTGTAQIIRLII-RDESLHGYYIG-YLFQEGLEELP---E---LEQEELKDEIYDLLYELYENEEAYTELLYD 248 (324)
T ss_pred CCcccHHHHHHHHH-hhhHHHHHHHH-HHHHHHHHhCC---H---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56899999999999 99999988766 32221 11111 1 10111 235789999999999998877665
No 99
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=24.43 E-value=3e+02 Score=20.50 Aligned_cols=56 Identities=18% Similarity=0.063 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccC
Q psy15458 14 QKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHH 75 (176)
Q Consensus 14 ~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~ 75 (176)
..-..++..+.+.|.--. -++-+..+|.+.. .+..+-+.+.. +++..+|=-...+.
T Consensus 104 ~~~~~~~~~~~~~al~~s----~R~Dl~~~f~~~~-~~~~~~~~~~~-~l~~~KGwl~~pP~ 159 (166)
T PF11553_consen 104 SFMSQAGITNYGRALSSS----VRNDLRAFFMKFL-MEALELYDKIV-KLMKEKGWLERPPY 159 (166)
T ss_dssp HHHHHHHHHHHHHHHHH------SHHHHHHHHHHH-HHHHHHHHHHH-HHHHHTT------B
T ss_pred HHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHCCCcCCCCC
Confidence 333344444444443332 4556999999999 99999999999 99999886554333
No 100
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=23.87 E-value=3.9e+02 Score=21.50 Aligned_cols=28 Identities=11% Similarity=-0.152 Sum_probs=24.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15458 37 RPGFAKFSSRVLVRSGGEHAIKFSSSYLTM 66 (176)
Q Consensus 37 l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~ 66 (176)
...++.||+..| .-|...|..|. +....
T Consensus 21 ckel~~f~kERa-~IE~~YAK~L~-kLa~k 48 (239)
T cd07658 21 CKELATVLQERA-ELELNYAKGLS-KLSGK 48 (239)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHH
Confidence 457999999999 99999999999 77654
No 101
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=23.62 E-value=3.3e+02 Score=23.04 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=46.3
Q ss_pred hcCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCCCcccc-ccHHHHHHHHHHHHHHHHHHHHH
Q psy15458 29 HFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGVNKMTW-NSAAHAVQDALNLETQVTESIRK 107 (176)
Q Consensus 29 ~f~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~~~~~-~~~~~~~~~al~~Ek~v~~~l~~ 107 (176)
+|.+ ..-++|++.-++--+ .+|.-|.. +. -++...+-. ... .+...+. ..+.++++.|.+.|++.+..+..
T Consensus 176 ~l~~-~~km~g~~~~i~~I~-RDE~lH~~-f~-~~l~~~~~~-~~~---~~~~~~~~~~i~~l~~~av~~E~e~~~~~~~ 247 (324)
T PRK13966 176 YWSS-RAKLTNTADMIRLII-RDEAVHGY-YI-GYKFQRGLA-LVD---DVTRAELKDYTYELLFELYDNEVEYTQDLYD 247 (324)
T ss_pred HHhh-cCCCCcHHHHHHHHH-HhHHHHHH-HH-HHHHHHHHH-hCC---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 358899999999999 99999994 44 354442211 001 1111121 34689999999999998876653
No 102
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=22.01 E-value=3e+02 Score=19.59 Aligned_cols=89 Identities=16% Similarity=0.061 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-c---CcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCCCCC
Q psy15458 4 SCTNLMMQQVQKELNASLTYLAMGVH-F---SRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHHQGV 79 (176)
Q Consensus 4 ~~~~~Ln~qi~~El~as~~Yl~ma~~-f---~~~~~~l~g~a~~f~~~s~~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~ 79 (176)
.....||.+++.+....+.=..-+.| | .+.++.+.-|+.||.-.- .=..--...|. .|+..+|+.-........
T Consensus 30 ~a~~~ln~~w~~~V~~~~~~~i~gRYPF~~~s~~dv~l~Df~~fF~p~G-~ld~F~~~~L~-~fvd~~~~~w~~~~~~~~ 107 (125)
T PF06744_consen 30 GARSYLNKAWQAEVYPFCRQAIAGRYPFDPDSSRDVSLADFARFFGPGG-VLDQFFNQYLK-PFVDTSGNPWRWRPGDGQ 107 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHhcCCC-cHHHHHHHHHH-HHHhCCCCcceeCCCCCc
Confidence 45677888888776665543222222 2 234689999999999777 66666777777 888888876554443221
Q ss_pred CccccccHHHHHHHH
Q psy15458 80 NKMTWNSAAHAVQDA 94 (176)
Q Consensus 80 ~~~~~~~~~~~~~~a 94 (176)
...--.+.+..|+.|
T Consensus 108 ~~~~~~~~L~~~~~A 122 (125)
T PF06744_consen 108 GLGLSPAFLAQFQRA 122 (125)
T ss_pred CCCCCHHHHHHHHHH
Confidence 111223445555543
No 103
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=21.97 E-value=47 Score=28.31 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=16.3
Q ss_pred HHHcCCcccccCCCCCCcccccc
Q psy15458 64 LTMRGNLTDYHHHQGVNKMTWNS 86 (176)
Q Consensus 64 l~~rGg~~~~~~i~~~~~~~~~~ 86 (176)
+=+|||+|.-...|+|..+.|..
T Consensus 291 VPDRGGRp~e~~~Pp~eMP~w~~ 313 (318)
T PF10239_consen 291 VPDRGGRPNEIEPPPPEMPSWQK 313 (318)
T ss_pred CCCCCCCcCcCCCCCCCCCCchh
Confidence 33799999877766555677864
No 104
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=21.84 E-value=86 Score=26.31 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccCCCCCC--ccccccHHHHHHHHH
Q psy15458 50 RSGGEHAIKFSSSYLTMRGNLTDYHHHQGVN--KMTWNSAAHAVQDAL 95 (176)
Q Consensus 50 ~ee~~hA~~l~~~yl~~rGg~~~~~~i~~~~--~~~~~~~~~~~~~al 95 (176)
+.--+.|+.++ .|+..+||...+.+-.+|+ +..|+--...|+.|+
T Consensus 221 E~l~~daq~Il-~yL~~~gG~mpf~DKSsPEdIk~~FgiSKg~FKrAi 267 (287)
T COG2996 221 EMLDEDAQMIL-TYLESNGGFMPFNDKSSPEDIKATFGISKGQFKRAI 267 (287)
T ss_pred HhhhhhHHHHH-HHHHHcCCccccCCCCCHHHHHHHhCcCHHHHHHHH
Confidence 33347899999 9999999999888743332 122443445555554
No 105
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=20.47 E-value=3.5e+02 Score=19.78 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=26.9
Q ss_pred CChhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q psy15458 126 NDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKT 159 (176)
Q Consensus 126 ~D~~~~~~l~~~fleeQ~~~i~~l~~~l~~l~~~ 159 (176)
.||.+-.+|. .|..+-..-+.+|..+|..+..-
T Consensus 27 ~~~~lk~~f~-~~~~~~~~~~~eL~~~v~~lGg~ 59 (139)
T TIGR02284 27 KDPELATLFR-RIAGEKSAIVSELQQVVASLGGK 59 (139)
T ss_pred CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCC
Confidence 7888988887 68888888888899888777643
Done!