RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15458
(176 letters)
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 191
Score = 127 bits (321), Expect = 8e-38
Identities = 83/180 (46%), Positives = 107/180 (59%), Gaps = 13/180 (7%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60
M SC N M QQ+Q E+ ASL YLAMG HFS+D VNRPGFA+ EHA+K
Sbjct: 17 MHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLF-FDAASEEREHAMKLI 75
Query: 61 SSYLTMRGNLTDYHHH----QGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGT 116
YL MRG LT+ + + +W A++ AL++E+ VT+SIR +I CE +
Sbjct: 76 E-YLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDDS 134
Query: 117 NNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
NDYHL D+LTG+FL+EQYKGQR LAG ST++K H L EF+ DK+ L
Sbjct: 135 EF-------NDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLL 187
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1
PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Length = 173
Score = 126 bits (319), Expect = 1e-37
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64
C + + V + ++S YL+M +F+RD V FAKF R EHA K Y
Sbjct: 13 CEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFF-RERSEEEKEHAEKLIE-YQ 70
Query: 65 TMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDL-E 123
RG + + W + A+Q AL L+ V +++ ++H +
Sbjct: 71 NQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQAL-----------LDLHAVAA 119
Query: 124 SVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
+D H++D+L +L E + +KL +++++K +H + E+L +K L
Sbjct: 120 DKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTL 172
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme
protein, iron storage, iron, metal-binding,
oxidoreductase, phosphorylation; 1.5A {Homo sapiens}
PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A
2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Length = 183
Score = 126 bits (319), Expect = 1e-37
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60
+ +Q+ +L AS YL+M +F RD V FAK+ EHA K
Sbjct: 13 YHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYF-LHQSHEEREHAEKLM 71
Query: 61 SSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVH 120
RG Q + W S +A++ AL+LE V +S+ +H
Sbjct: 72 K-LQNQRGGRIFLQDIQKPDCDDWESGLNAMECALHLEKNVNQSL-----------LELH 119
Query: 121 DL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
L ND HL D++ +L+EQ K ++L ++ +RK L E+L DK L
Sbjct: 120 KLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTL 176
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron,
metal-binding, oxidoreductase; 1.35A {Rana catesbeiana}
PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A
3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Length = 176
Score = 123 bits (310), Expect = 2e-36
Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 14/177 (7%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60
C + + + EL AS TY +M F RD V A+F + EHA KF
Sbjct: 9 YHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFF-KEHSHEEREHAEKFM 67
Query: 61 SSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVH 120
Y RG + + W + A+Q AL LE V +++ ++H
Sbjct: 68 K-YQNKRGGRVVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQAL-----------LDLH 115
Query: 121 DL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
L D HL D+L E+L+EQ K +++ ++ +++ + E+L DK +
Sbjct: 116 KLATDKVDPHLCDFLESEYLEEQVKHIKRIGDFITNLKRLGLPENGMGEYLFDKHSV 172
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin,
iron storage, metal-binding; 1.15A {Equus caballus} PDB:
2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A
2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X
3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Length = 174
Score = 120 bits (304), Expect = 2e-35
Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 14/173 (8%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64
+ + V L AS TYL++G +F RD V G F R L + + A +
Sbjct: 12 VEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFF-RQLAQQKMQGAERLLK-MQ 69
Query: 65 TMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDL-E 123
RG + Q ++ W + A++ A+ LE + +++ ++H L
Sbjct: 70 NQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQAL-----------LDLHALGS 118
Query: 124 SVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
+ D HL D+L FLDE+ K +K+ L+ +++ G+ L E+L ++ L
Sbjct: 119 AQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTL 171
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva
pertusa}
Length = 204
Score = 121 bits (305), Expect = 3e-35
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 21/181 (11%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60
C + +Q+ E S Y A+ +F+RD V PGFAKF + EHA
Sbjct: 36 YHIECEAAINEQINIEYTISYVYHALHSYFARDNVGLPGFAKF-FKEASDEEREHAHML- 93
Query: 61 SSYLTMRGNLTDYHH----HQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGT 116
Y T RG + A +A++ AL+LE + +
Sbjct: 94 MDYQTKRGGRVELKPLAAPEMEFANDDKGEALYAMELALSLEKLNFQKL----------- 142
Query: 117 NNVHDL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEF 175
+ + + D L D++ G L EQ ++ A +S +R+ G +L+D+E
Sbjct: 143 QALQAIADKHKDAALCDFVEGGLLSEQVDAVKEHAVYVSQLRRVGKGVG---VYLLDQEL 199
Query: 176 L 176
Sbjct: 200 G 200
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage,
CAGE-like protein, plant, iron, metal-binding,
oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Length = 212
Score = 121 bits (305), Expect = 4e-35
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 21/177 (11%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64
+ + +Q+ E N S Y AM +F RD V G AKF + EHA K Y
Sbjct: 45 SESAVNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKF-FKESSEEEREHAEKL-MEYQ 102
Query: 65 TMRGNLTDYHH----HQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVH 120
RG + A HA++ AL+LE E + N+H
Sbjct: 103 NKRGGKVKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKL-----------LNLH 151
Query: 121 DL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
+ D L+D++ E+L EQ + ++++ ++ +R+ HG + D+ L
Sbjct: 152 SVATKNGDVQLADFVETEYLGEQVEAIKRISEYVAQLRRVGKGHG---VWHFDQMLL 205
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding
protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Length = 191
Score = 119 bits (299), Expect = 2e-34
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 14/173 (8%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64
+ V L AS TYL++G +F RD V G + F R L E +
Sbjct: 13 VEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFF-RELAEEKREGYERLLK-MQ 70
Query: 65 TMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDL-E 123
RG + + + W A++ A+ LE ++ +++ ++H L
Sbjct: 71 NQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQAL-----------LDLHALGS 119
Query: 124 SVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
+ D HL D+L FLDE+ K +K+ L+ + + G L E+L K L
Sbjct: 120 ARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLSSKGSL 172
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 212
Score = 107 bits (269), Expect = 7e-30
Identities = 35/181 (19%), Positives = 70/181 (38%), Gaps = 17/181 (9%)
Query: 3 HSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSS 62
+ + + L S YL +F+ NR GF+K + L I
Sbjct: 35 GNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLF-KKLSDEAWSKTIDIIK- 92
Query: 63 YLTMRGNLTDYHHHQGVNKM-----TWNSAAHAVQDALNLETQVTESIRKIIIECEQGTN 117
++T RG+ ++ H + N A+ AL+ + ++ E I E
Sbjct: 93 HVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREAT---- 148
Query: 118 NVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHG----KLTEFLMDK 173
+ + ++D ++ +L EF+++ + R LAG S ++K + L ++ D+
Sbjct: 149 --RNSQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDE 206
Query: 174 E 174
Sbjct: 207 Y 207
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 91.9 bits (229), Expect = 4e-24
Identities = 38/180 (21%), Positives = 67/180 (37%), Gaps = 30/180 (16%)
Query: 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE--HAIKFSS 61
+L +QV +E AS YL+ + F ++ + G A + +L S E H + F
Sbjct: 4 ELLDLFNRQVTQEFTASQVYLSASIWFDQN--DWEGMAAY---MLAESAEEREHGLGF-V 57
Query: 62 SYLTMRGNLTDYHHHQGVNK----MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTN 117
+ R + Q V W+S Q L LE T S+
Sbjct: 58 DFANKRNIPIEL---QAVPAPVSCAEWSSPEDVWQSILELEQANTRSL-----------L 103
Query: 118 NVHDL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
N+ + + +D+ + +L F +Q + K+ +L+ + T G L +D
Sbjct: 104 NLAEAASTCHDFAVMAFLN-PFHLQQVNEEDKIGSILAKVTDENRTPGLL--RSLDVVSF 160
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon,
entry channels, thermostability, hyperthermophIle,
ferroxidase center; 2.75A {Pyrococcus furiosus} PDB:
2jd7_0 2jd8_0 2x17_0
Length = 174
Score = 86.1 bits (214), Expect = 6e-22
Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 24/174 (13%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE--HAIKFSSS 62
+ Q+ +EL ++ Y AM +F + + GFA + + ++ E HA++F +
Sbjct: 6 MLKALNDQLNRELYSAYLYFAMAAYF--EDLGLEGFANW---MKAQAEEEIGHALRF-YN 59
Query: 63 YLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDL 122
Y+ R + W S A + A E +++SI + L
Sbjct: 60 YIYDRNGRVELDEIPKP-PKEWESPLKAFEAAYEHEKFISKSI-----------YELAAL 107
Query: 123 -ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEF 175
E DY +L F++EQ + + + +L ++ + + F++DKE
Sbjct: 108 AEEEKDYSTRAFLEW-FINEQVEEEASVKKILDKLKFAKDS--PQILFMLDKEL 158
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A
{Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 84.6 bits (210), Expect = 2e-21
Identities = 31/180 (17%), Positives = 67/180 (37%), Gaps = 25/180 (13%)
Query: 1 MVHS-CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE--HAI 57
M+ L+ +Q+ KE+ A+ YL+M + + G F + + E HA
Sbjct: 1 MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYEN--SLDGAGAF---LFAHASEESDHAK 55
Query: 58 KFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTN 117
K +YL + + + + + S + E +T+SI N
Sbjct: 56 KL-ITYLNETDSHVELQEVKQP-EQNFKSLLDVFEKTYEHEQFITKSI-----------N 102
Query: 118 NVHDL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
+ + + DY ++L ++ EQ++ + G++ ++ +L D+
Sbjct: 103 TLVEHMLTHKDYSTFNFLQ-WYVSEQHEEEALFRGIVDKIKLIGEH--GNGLYLADQYIK 159
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase;
2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Length = 189
Score = 85.0 bits (211), Expect = 3e-21
Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 31/169 (18%)
Query: 11 QQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE--HAIKFSSSYLTMRG 68
+Q+ E A+ Y+A+ V+F + + P AK ++ E HA+ +L R
Sbjct: 17 EQIHNEFTAAQQYVAIAVYFDSE--DLPQLAKH---FYSQAVEERNHAMML-VQHLLDRD 70
Query: 69 NLTDYHHHQGVNK--MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDL-ESV 125
+ GV+ ++ A+ AL+ E VT+ + + +
Sbjct: 71 LRVEI---PGVDTVRNQFDRPREALALALDQERTVTDQV-----------GRLTAVARDE 116
Query: 126 NDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKE 174
D+ ++ FL EQ + +A ++ + F ++
Sbjct: 117 GDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGA-----NLFELENF 159
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal
binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1
PDB: 1sq3_A 3kx9_A
Length = 173
Score = 84.2 bits (209), Expect = 3e-21
Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 28/180 (15%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE--HAIK 58
+ + +Q+ E+ ++ YL+M +F D + GF+ + + V+ E HA+K
Sbjct: 4 ISEKMVEALNRQINAEIYSAYLYLSMASYF--DSIGLKGFSNW---MRVQWQEELMHAMK 58
Query: 59 FSSSYLTMRGNLTDYHHHQGVNK--MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGT 116
+++ RG V + W+S A + E VT+ I
Sbjct: 59 M-FDFVSERGGRVKL---YAVEEPPSEWDSPLAAFEHVYEHEVNVTKRI----------- 103
Query: 117 NNVHDL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEF 175
+ + ++ D+ ++L ++ EQ + + ++ +R K +DKE
Sbjct: 104 HELVEMAMQEKDFATYNFLQW-YVAEQVEEEASALDIVEKLRLIGED--KRALLFLDKEL 160
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu
initiative, PSI, joint center for structural genomics,
META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1
PDB: 1z4a_A*
Length = 176
Score = 82.3 bits (204), Expect = 2e-20
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE--HAIKFSSS 62
+ Q+ +E+ +S YL+M +F + GFA + + ++ E HA+KF
Sbjct: 20 VRKALNDQLNREIYSSYLYLSMATYFDAE--GFKGFAHW---MKKQAQEELTHAMKF-YE 73
Query: 63 YLTMRGNLTDYHHHQGVNK--MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVH 120
Y+ RG + + + K WN A + AL E VT+SI N+
Sbjct: 74 YIYERGGRVEL---EAIEKPPSNWNGIKDAFEAALKHEEFVTQSI-----------YNIL 119
Query: 121 DL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKE 174
+L D+ +L F+DEQ + + ++ +L + K G F +D+
Sbjct: 120 ELASEEKDHATVSFLKW-FVDEQVEEEDQVREILDLLEKANGQ--MSVIFQLDRY 171
>3qz3_A Ferritin; structural genomics, the center for structural genomics
of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A
{Vibrio cholerae o1 biovar el tor}
Length = 184
Score = 81.6 bits (202), Expect = 4e-20
Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 24/178 (13%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE--HAIK 58
+ + + +Q+ E +S YL M + G A+F + + E H +
Sbjct: 11 LSQAMVEHLNEQINLEFFSSNLYLQMSAWC--EDKGFDGAAEF---LRAHAVEEMQHMQR 65
Query: 59 FSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNN 118
+Y++ G L + + S ++ E ++T+ I N
Sbjct: 66 L-FTYVSETGALPILGAIAAP-RHDFASLGEVFRETYQHEQKITQQI-----------NK 112
Query: 119 VHDL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEF 175
+ + + DY ++L ++ EQ++ ++ G+L + F +DK+
Sbjct: 113 LAHVAFTSQDYSTFNFLQW-YVAEQHEEEKLFKGILDKLELVGED--GKALFFIDKDL 167
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli}
SCOP: a.25.1.1
Length = 165
Score = 81.1 bits (201), Expect = 5e-20
Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 28/180 (15%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE--HAIK 58
+ + +Q+ EL +SL Y M S G A F + + E H +
Sbjct: 2 LKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYH--TFEGAAAF---LRRHAQEEMTHMQR 56
Query: 59 FSSSYLTMRGNLTDYHHHQGVNK--MTWNSAAHAVQDALNLETQVTESIRKIIIECEQGT 116
YLT GNL V ++S Q+ E +T+ I
Sbjct: 57 L-FDYLTDTGNLPRI---NTVESPFAEYSSLDELFQETYKHEQLITQKI----------- 101
Query: 117 NNVHDL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEF 175
N + + DY ++L ++ EQ++ ++ ++ + + + +DKE
Sbjct: 102 NELAHAAMTNQDYPTFNFLQW-YVSEQHEEEKLFKSIIDKLSLAGKS--GEGLYFIDKEL 158
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A
{Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A
3egm_A
Length = 181
Score = 80.1 bits (198), Expect = 2e-19
Identities = 33/180 (18%), Positives = 61/180 (33%), Gaps = 25/180 (13%)
Query: 1 MVHS-CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE--HAI 57
M+ L+ +QV KE+N+S Y++M + G F + + E HA
Sbjct: 15 MLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTH--SLDGAGLF---LFDHAAEEYEHAK 69
Query: 58 KFSSSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTN 117
K +L + + Q A E ++ESI N
Sbjct: 70 KL-IIFLNENNVPVQLTSISAP-EHKFEGLTQIFQKAYEHEQHISESI-----------N 116
Query: 118 NVHDL-ESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
N+ D D+ ++L ++ EQ++ + +L + +L D+
Sbjct: 117 NIVDHAIKSKDHATFNFLQW-YVAEQHEEEVLFKDILDKIELIGNE--NHGLYLADQYVK 173
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.001
Identities = 42/218 (19%), Positives = 70/218 (32%), Gaps = 88/218 (40%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMG--VHFSRDCVNRP-------------GF----- 40
M+ S +NL +QVQ +N + ++L G V S VN G
Sbjct: 338 ML-SISNLTQEQVQDYVNKTNSHLPAGKQVEISL--VNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 41 ------------AKFSSRVLVRSGGEHAIKFSSSYLTMRGNLTDYHHH--QGVNKM---- 82
FS R +KFS+ +L + + +H H + +
Sbjct: 395 KAKAPSGLDQSRIPFSER---------KLKFSNRFLPV---ASPFHSHLLVPASDLINKD 442
Query: 83 ------TWNSAA-----HAVQDALNL---ETQVTESIRKIIIECEQGTNNVHDLESVNDY 128
++N+ + D +L ++E I II V E+ +
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII-----RLPVK-WETTTQF 496
Query: 129 ---HLSDWLTGEFLDEQYKGQRKLAGMLS-TMRKTEGT 162
H+ D F G +G+ T R +GT
Sbjct: 497 KATHILD-----F------GPGGASGLGVLTHRNKDGT 523
Score = 32.3 bits (73), Expect = 0.077
Identities = 25/152 (16%), Positives = 42/152 (27%), Gaps = 54/152 (35%)
Query: 26 MGVHF------SRDCVNRPGFAK--------FSSRVLVRSG-GEHAIKFSSSYLTMRGNL 70
MG+ ++D NR A FS +V + I F +G
Sbjct: 1631 MGMDLYKTSKAAQDVWNR---ADNHFKDTYGFSILDIVINNPVNLTIHFGGE----KGKR 1683
Query: 71 TDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQG----TNN-------- 118
+ + M + + + ++ E E+G T
Sbjct: 1684 I----RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
Query: 119 ----VHDLES-----VNDY---HLSDWLTGEF 138
DL+S + H S L GE+
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGH-S--L-GEY 1767
Score = 28.5 bits (63), Expect = 1.6
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 47/124 (37%)
Query: 2 VHSCTNLMMQQVQKELNASL----TYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAI 57
+H+ ++Q+ L + Y+ +R RP F K S+ L R+ GE
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYIT-----ARIMAKRP-FDKKSNSALFRAVGEGNA 154
Query: 58 KF---------SSSYL-------------------TMRGNL---------TDYHHHQGVN 80
+ + Y L + QG+N
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 81 KMTW 84
+ W
Sbjct: 215 ILEW 218
Score = 28.1 bits (62), Expect = 1.9
Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 34/99 (34%)
Query: 16 ELNAS-LTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIK-FSSSYLTMRGNLTDY 73
EL L Y++ V P +VL + F + YL GN D
Sbjct: 59 ELVGKFLGYVSSLVE--------PSKVGQFDQVL-----NLCLTEFENCYL--EGN--D- 100
Query: 74 HHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIEC 112
HA+ L E T K +I+
Sbjct: 101 --------------IHALAAKLLQENDTTLVKTKELIKN 125
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.065
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 9/31 (29%)
Query: 11 QQVQKELNASLTYLAMGVHFSRDCVNRPGFA 41
Q ++K L ASL L ++ D + P A
Sbjct: 20 QALKK-LQASLK-L-----YADD--SAPALA 41
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine
synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus
KT}
Length = 432
Score = 26.0 bits (57), Expect = 7.8
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 78 GVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESV 125
G N + + +Q A+ ++ R++++ E T N L +V
Sbjct: 68 GFNNLNPDFLPLCIQAAMVAVEKICPDARRLLLIPENHTRNTFYLRNV 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.384
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,631,017
Number of extensions: 141109
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 26
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)