RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15458
(176 letters)
>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), H chain [TaxId: 7111]}
Length = 191
Score = 114 bits (286), Expect = 4e-33
Identities = 83/180 (46%), Positives = 107/180 (59%), Gaps = 13/180 (7%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60
M SC N M QQ+Q E+ ASL YLAMG HFS+D VNRPGFA+ EHA+K
Sbjct: 17 MHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLF-FDAASEEREHAMKLI 75
Query: 61 SSYLTMRGNLTDYHHH----QGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGT 116
YL MRG LT+ + + +W A++ AL++E+ VT+SIR +I CE +
Sbjct: 76 E-YLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDDS 134
Query: 117 NNVHDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
NDYHL D+LTG+FL+EQYKGQR LAG ST++K H L EF+ DK+ L
Sbjct: 135 EF-------NDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLL 187
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), L chain [TaxId: 7111]}
Length = 200
Score = 109 bits (273), Expect = 5e-31
Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 17/179 (9%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64
+ + L S YL +F+ NR GF+K + L I ++
Sbjct: 25 VATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKL-FKKLSDEAWSKTIDI-IKHV 82
Query: 65 TMRGNLTDYHHH-----QGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNV 119
T RG+ ++ H + N N A+ AL+ + ++ E I E
Sbjct: 83 TKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREAT------ 136
Query: 120 HDLESVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRK----TEGTHGKLTEFLMDKE 174
+ + ++D ++ +L EF+++ + R LAG S ++K G L ++ D+
Sbjct: 137 RNSQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDEY 195
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 171
Score = 97.8 bits (243), Expect = 6e-27
Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 12/173 (6%)
Query: 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSY 63
C + + V + ++S YL+M +F+RD V FAKF R EHA K Y
Sbjct: 10 DCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFF-RERSEEEKEHAEKLIE-Y 67
Query: 64 LTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLE 123
RG + + W + A+Q AL L+ V +++ +
Sbjct: 68 QNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDLHAVAAD--------- 118
Query: 124 SVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
+D H++D+L +L E + +KL +++++K +H + E+L +K L
Sbjct: 119 -KSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTL 170
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 173
Score = 94.7 bits (235), Expect = 1e-25
Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 12/173 (6%)
Query: 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSY 63
C + + V EL AS TYL+M +F RD + AKF + EHA K
Sbjct: 11 DCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFF-KEQSHEEREHAEKLMK-D 68
Query: 64 LTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLE 123
RG Q + W + A+Q AL LE V +++ +
Sbjct: 69 QNKRGGRIVLQDVQKPERDEWGNTLEAMQAALQLEKTVNQALLDLHKVGSD--------- 119
Query: 124 SVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
D HL D+L E+ +EQ K ++L ++ +++ + E+L DK +
Sbjct: 120 -KVDPHLCDFLETEYPEEQVKSIKQLGDYITNLKRLGLPQNGMGEYLFDKHTM 171
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens),
mitocondial isoform [TaxId: 9606]}
Length = 171
Score = 89.7 bits (222), Expect = 1e-23
Identities = 47/173 (27%), Positives = 71/173 (41%), Gaps = 12/173 (6%)
Query: 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSY 63
+ +Q+ EL AS YL+M +FSRD V F+++ R EHA K
Sbjct: 10 DSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYF-LHQSREETEHAEKLMR-L 67
Query: 64 LTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLE 123
RG + + W S HA++ AL LE V +S+ ++
Sbjct: 68 QNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSLLELHALASD--------- 118
Query: 124 SVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
D HL D+L +L+EQ K ++L + + K L E+L D L
Sbjct: 119 -KGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTL 170
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 87.8 bits (217), Expect = 7e-23
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 20/181 (11%)
Query: 4 SCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSY 63
+ + V L AS TYL++G F RD V G F R L E A + +
Sbjct: 10 EVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFF-RELAEEKREGAERLLE-F 67
Query: 64 LTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLE 123
RG + Q ++ W A++ AL +E + +++ +
Sbjct: 68 QNDRGGRALFQDVQKPSQDEWGKTQEAMEAALAMEKNLNQALLDLHALGSA--------- 118
Query: 124 SVNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRK--------TEGTHGKLTEFLMDKEF 175
D HL D+L +LD++ K +K+ L+ +R+ T G L E+L ++
Sbjct: 119 -RADPHLCDFLESHYLDKEVKLIKKMGNHLTNLRRVAGPQPAQTGAPQGSLGEYLFERLT 177
Query: 176 L 176
L
Sbjct: 178 L 178
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
[TaxId: 562]}
Length = 161
Score = 70.8 bits (173), Expect = 1e-16
Identities = 32/164 (19%), Positives = 61/164 (37%), Gaps = 18/164 (10%)
Query: 11 QQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTMRGNL 70
+Q+ EL +SL Y M S G A F R + H + YLT GNL
Sbjct: 11 EQMNLELYSSLLYQQMSAWCSYH--TFEGAAAF-LRRHAQEEMTHMQRL-FDYLTDTGNL 66
Query: 71 TDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVNDYHL 130
+ + ++S Q+ E +T+ I ++ + DY
Sbjct: 67 PRINTVESP-FAEYSSLDELFQETYKHEQLITQKINELAHAA----------MTNQDYPT 115
Query: 131 SDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKE 174
++L ++ EQ++ ++ ++ + + + +DKE
Sbjct: 116 FNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKS--GEGLYFIDKE 156
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId:
2336]}
Length = 164
Score = 69.3 bits (169), Expect = 6e-16
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64
+ Q+ +E+ +S YL+M +F D GFA + + + HA+KF Y+
Sbjct: 8 VRKALNDQLNREIYSSYLYLSMATYF--DAEGFKGFAHW-MKKQAQEELTHAMKF-YEYI 63
Query: 65 TMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLES 124
RG + + WN A + AL E VT+SI I+ +
Sbjct: 64 YERGGRVELEAIEKP-PSNWNGIKDAFEAALKHEEFVTQSIYNILELASE---------- 112
Query: 125 VNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKE 174
D+ +L F+DEQ + + ++ +L + K G F +D+
Sbjct: 113 EKDHATVSFLK-WFVDEQVEEEDQVREILDLLEKANGQ--MSVIFQLDRY 159
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 162
Score = 68.8 bits (168), Expect = 7e-16
Identities = 33/170 (19%), Positives = 68/170 (40%), Gaps = 18/170 (10%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64
+ +Q+ E+ ++ YL+M +F D + GF+ + RV + HA+K ++
Sbjct: 6 MVEALNRQINAEIYSAYLYLSMASYF--DSIGLKGFSNW-MRVQWQEELMHAMKM-FDFV 61
Query: 65 TMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLES 124
+ RG + + W+S A + E VT+ I +++ Q
Sbjct: 62 SERGGRVKLYAVEEPPSE-WDSPLAAFEHVYEHEVNVTKRIHELVEMAMQ---------- 110
Query: 125 VNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKE 174
D+ ++L ++ EQ + + ++ +R L +DKE
Sbjct: 111 EKDFATYNFLQ-WYVAEQVEEEASALDIVEKLRLIGEDKRAL--LFLDKE 157
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
[TaxId: 197]}
Length = 165
Score = 68.1 bits (166), Expect = 2e-15
Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 18/172 (10%)
Query: 5 CTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYL 64
L+ +Q+ KE+ A+ YL+M + + G F +HA K +YL
Sbjct: 6 VVKLLNEQINKEMYAANLYLSMSSWCYEN--SLDGAGAF-LFAHASEESDHAKKL-ITYL 61
Query: 65 TMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLES 124
+ + + + + S + E +T+SI ++ +
Sbjct: 62 NETDSHVELQEVKQPEQN-FKSLLDVFEKTYEHEQFITKSINTLVEHM----------LT 110
Query: 125 VNDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRKTEGTHGKLTEFLMDKEFL 176
DY ++L ++ EQ++ + G++ ++ G HG +L D+
Sbjct: 111 HKDYSTFNFLQ-WYVSEQHEEEALFRGIVDKIKLI-GEHG-NGLYLADQYIK 159
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 169
Score = 38.5 bits (89), Expect = 1e-04
Identities = 19/152 (12%), Positives = 48/152 (31%), Gaps = 17/152 (11%)
Query: 7 NLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFSSSYLTM 66
++ + EL+A Y+ H+S D ++ A + + HA F+ +
Sbjct: 11 EVLNKARAMELHAIHQYMNQ--HYSLDDMDYGELAANMKLIAIDE-MRHAENFAERIKEL 67
Query: 67 RGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESVN 126
G + +T + + + E E+ + + C++
Sbjct: 68 GGE---PTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKE----------QG 114
Query: 127 DYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRK 158
D + ++E+ + S ++
Sbjct: 115 DIVTARLFE-RIIEEEQAHLTYYENIGSHIKN 145
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1)
{Escherichia coli [TaxId: 562]}
Length = 158
Score = 34.7 bits (79), Expect = 0.002
Identities = 23/153 (15%), Positives = 43/153 (28%), Gaps = 19/153 (12%)
Query: 7 NLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGE-HAIKFSSSYLT 65
N + + + EL A Y F G + + S E +
Sbjct: 9 NYLNKLLGNELVAINQYFLHARMFK-----NWGLKRLNDVEYHESIDEMKHADRYIERIL 63
Query: 66 MRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVHDLESV 125
+ ++ L LE +++R+ I + V
Sbjct: 64 FLE--GLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADS----------V 111
Query: 126 NDYHLSDWLTGEFLDEQYKGQRKLAGMLSTMRK 158
+DY D + E L ++ L L ++K
Sbjct: 112 HDYVSRDMMI-EILRDEEGHIDWLETELDLIQK 143
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 135
Score = 31.6 bits (71), Expect = 0.019
Identities = 17/149 (11%), Positives = 34/149 (22%), Gaps = 16/149 (10%)
Query: 1 MVHSCTNLMMQQVQKELNASLTYLAMGVHFSRDCVNRPGFAKFSSRVLVRSGGEHAIKFS 60
V S + + E A Y A A+ + H
Sbjct: 3 AVGSTLENLKAAIAGETGAHAKYTAFAKAAREQ--GYEQIARLFEAT-AAAELIHIGLEY 59
Query: 61 SSYLTMRGNLTDYHHHQGVNKMTWNSAAHAVQDALNLETQVTESIRKIIIECEQGTNNVH 120
+ M Y ++ + + A + ++ I + ++
Sbjct: 60 ALVAEMEP---GYEKPTVAAPSAYSCDLNLISGANGEIYETSDMYPAFIRKAQE------ 110
Query: 121 DLESVNDYHLSDWLTGEFLDEQYKGQRKL 149
+ T L E +R L
Sbjct: 111 ----EGNSKAVHVFTRAKLAESVHAERYL 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.130 0.384
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 625,940
Number of extensions: 25533
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 15
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.5 bits)