BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15459
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 4 EFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALND 63
EFW+ F+C+ P N F R CTG E L N ++++ FV +A+ A AH L +
Sbjct: 343 EFWQHRFQCRLP--GHLLENPNFKRICTGNESLEENYVQ-DSKMGFVINAIYAMAHGLQN 399
Query: 64 MHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRG 98
MH LC G GLC+AMKP GS LL +L K F G
Sbjct: 400 MHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIG 434
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 85.5 bits (210), Expect = 7e-18, Method: Composition-based stats.
Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 5/98 (5%)
Query: 3 SEFWEDHFKCKYP-NGSRTPYNTEFNRTCTGKEKLSHN-NTAFENQLQFVSDAVMAFAHA 60
+E+WE++F CK +GS+ + +R CTG+E++ + N E ++QFV DAV A AHA
Sbjct: 333 AEYWEENFNCKLTISGSK---KEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHA 389
Query: 61 LNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRG 98
L+ M+K+LC +G+C M+ G LLKY+R V+F G
Sbjct: 390 LHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNG 427
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 85.1 bits (209), Expect = 8e-18, Method: Composition-based stats.
Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 5/98 (5%)
Query: 3 SEFWEDHFKCKYP-NGSRTPYNTEFNRTCTGKEKLSHN-NTAFENQLQFVSDAVMAFAHA 60
+E+WE++F CK +GS+ + +R CTG+E++ + N E ++QFV DAV A AHA
Sbjct: 333 AEYWEENFNCKLTISGSK---KEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHA 389
Query: 61 LNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRG 98
L+ M+K+LC +G+C M+ G LLKY+R V+F G
Sbjct: 390 LHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRHVNFNG 427
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 83.2 bits (204), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 4 EFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALND 63
EFW+ F+C+ P N F + CTG E L N ++++ FV +A+ A AH L +
Sbjct: 338 EFWQHRFQCRLP--GHLLENPNFKKVCTGNESLEENYVQ-DSKMGFVINAIYAMAHGLQN 394
Query: 64 MHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRG 98
MH LC G GLC+AMKP G LL +L K F G
Sbjct: 395 MHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVG 429
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 4 EFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALND 63
EFW+ F+C+ + N+++N+TC L ++ ++++ FV +A+ + A+ L++
Sbjct: 344 EFWQHRFQCRLEGFPQE--NSKYNKTCNSSLTLKTHHVQ-DSKMGFVINAIYSMAYGLHN 400
Query: 64 MHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRG 98
M LC G GLC+AMKP G LL+ L K +F G
Sbjct: 401 MQMSLCPGYAGLCDAMKPIDGRKLLESLMKTNFTG 435
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 62.0 bits (149), Expect = 9e-11, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 4 EFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALND 63
+FWE F+C N R C + +N E+++ FV +AV A AHAL+
Sbjct: 328 DFWEQKFQCSLQN------KRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHK 381
Query: 64 MHKELCHGKKGLCEAMKPTKGSDLLK-YLRKVDF 96
M + LC LC+AMK G L K YL K++F
Sbjct: 382 MQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINF 415
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 4 EFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALND 63
+FWE F+C N + C + +N E+++ FV +AV A AHAL+
Sbjct: 329 DFWEQKFQCSLQN------KRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHK 382
Query: 64 MHKELCHGKKGLCEAMKPTKGSDLLK-YLRKVDF 96
M + LC LC+AMK G L K YL K+ F
Sbjct: 383 MQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQF 416
>pdb|3N4G|A Chain A, Crystal Structure Of Native Cg10062
pdb|3N4G|B Chain B, Crystal Structure Of Native Cg10062
pdb|3N4G|C Chain C, Crystal Structure Of Native Cg10062
Length = 148
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 41 TAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAM 79
T + +++ +A A A+ D H EL H K L + +
Sbjct: 4 TCWSQRIRISREAKQRIAEAITDAHHELAHAPKYLVQVI 42
>pdb|3N4D|A Chain A, Crystal Structure Of Cg10062 Inactivated
By(R)-Oxirane-2-Carboxylate
pdb|3N4D|B Chain B, Crystal Structure Of Cg10062 Inactivated
By(R)-Oxirane-2-Carboxylate
pdb|3N4D|C Chain C, Crystal Structure Of Cg10062 Inactivated
By(R)-Oxirane-2-Carboxylate
pdb|3N4D|D Chain D, Crystal Structure Of Cg10062 Inactivated
By(R)-Oxirane-2-Carboxylate
pdb|3N4D|E Chain E, Crystal Structure Of Cg10062 Inactivated
By(R)-Oxirane-2-Carboxylate
pdb|3N4D|F Chain F, Crystal Structure Of Cg10062 Inactivated
By(R)-Oxirane-2-Carboxylate
pdb|3N4D|G Chain G, Crystal Structure Of Cg10062 Inactivated
By(R)-Oxirane-2-Carboxylate
pdb|3N4D|H Chain H, Crystal Structure Of Cg10062 Inactivated
By(R)-Oxirane-2-Carboxylate
pdb|3N4D|I Chain I, Crystal Structure Of Cg10062 Inactivated
By(R)-Oxirane-2-Carboxylate
pdb|3N4H|A Chain A, Crystal Structure Of Cg10062 Inactivated By
(S)-Oxirane-2-Carboxylate
Length = 148
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 41 TAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAM 79
T + +++ +A A A+ D H EL H K L + +
Sbjct: 4 TCWSQRIRISREAKQRIAEAITDAHHELAHAPKYLVQVI 42
>pdb|3O1H|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Presence Of Tmao
pdb|3O1I|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1I|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Ligand
pdb|3O1J|A Chain A, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
pdb|3O1J|B Chain B, Crystal Structure Of The Tors Sensor Domain - Tort Complex
In The Absence Of Isopropanol
Length = 277
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 28 RTCTGKEKLSHNNTAFENQLQFVSDAVMAF 57
RT T +++ TAFEN L+ + V+A
Sbjct: 181 RTLTNVDRIQQIQTAFENNLKIMKRRVLAV 210
>pdb|3I9Y|A Chain A, Crystal Structure Of The V. Parahaemolyticus Histidine
Kinase Sensor Tors Sensor Domain
Length = 276
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 28 RTCTGKEKLSHNNTAFENQLQFVSDAVMAF 57
RT T +++ TAFEN L+ + V+A
Sbjct: 181 RTLTNVDRIQQIQTAFENNLKIMKRRVLAV 210
>pdb|1Q3G|A Chain A, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|B Chain B, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|C Chain C, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|D Chain D, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|E Chain E, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|F Chain F, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|G Chain G, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|H Chain H, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|I Chain I, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|J Chain J, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|K Chain K, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|L Chain L, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|W Chain W, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|X Chain X, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|Y Chain Y, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
pdb|1Q3G|Z Chain Z, Mura (Asp305ala) Liganded With Tetrahedral Reaction
Intermediate
Length = 419
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 TAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEA 78
T FEN+ V + + AHA + + +CHG + L A
Sbjct: 326 TIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGA 363
>pdb|1EJC|A Chain A, Crystal Structure Of Unliganded Mura (Type2)
pdb|1EJD|A Chain A, Crystal Structure Of Unliganded Mura (Type1)
pdb|1EJD|B Chain B, Crystal Structure Of Unliganded Mura (Type1)
pdb|1EYN|A Chain A, Structure Of Mura Liganded With The Extrinsic Fluorescence
Probe Ans
pdb|1YBG|A Chain A, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|B Chain B, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|C Chain C, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|1YBG|D Chain D, Mura Inhibited By A Derivative Of 5-Sulfonoxy-Anthranilic
Acid
pdb|3KQA|A Chain A, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|B Chain B, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|C Chain C, Mura Dead-End Complex With Terreic Acid
pdb|3KQA|D Chain D, Mura Dead-End Complex With Terreic Acid
pdb|3LTH|A Chain A, E. Cloacae Mura Dead-End Complex With Unag And Fosfomycin
pdb|3SPB|A Chain A, Unliganded E. Cloacae Mura
pdb|3SPB|B Chain B, Unliganded E. Cloacae Mura
pdb|3SPB|C Chain C, Unliganded E. Cloacae Mura
pdb|3SPB|D Chain D, Unliganded E. Cloacae Mura
pdb|3SWQ|A Chain A, E. Cloacae Mura In Complex With Enolpyruvyl-Unag
pdb|3UPK|A Chain A, E. Cloacae Mura In Complex With Unag
Length = 419
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 TAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEA 78
T FEN+ V + + AHA + + +CHG + L A
Sbjct: 326 TIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGA 363
>pdb|1DLG|A Chain A, Crystal Structure Of The C115s Enterobacter Cloacae Mura
In The Un- Liganded State
pdb|1DLG|B Chain B, Crystal Structure Of The C115s Enterobacter Cloacae Mura
In The Un- Liganded State
pdb|1RYW|A Chain A, C115s Mura Liganded With Reaction Products
pdb|1RYW|B Chain B, C115s Mura Liganded With Reaction Products
pdb|1RYW|C Chain C, C115s Mura Liganded With Reaction Products
pdb|1RYW|D Chain D, C115s Mura Liganded With Reaction Products
pdb|1RYW|E Chain E, C115s Mura Liganded With Reaction Products
pdb|1RYW|F Chain F, C115s Mura Liganded With Reaction Products
pdb|1RYW|G Chain G, C115s Mura Liganded With Reaction Products
pdb|1RYW|H Chain H, C115s Mura Liganded With Reaction Products
Length = 419
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 TAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEA 78
T FEN+ V + + AHA + + +CHG + L A
Sbjct: 326 TIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGA 363
>pdb|3V4T|A Chain A, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|B Chain B, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|C Chain C, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|D Chain D, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|E Chain E, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|F Chain F, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|G Chain G, E. Cloacae C115d Mura Liganded With Unag
pdb|3V4T|H Chain H, E. Cloacae C115d Mura Liganded With Unag
pdb|3V5V|A Chain A, Unliganded E.Cloacae C115d Mura
pdb|3V5V|B Chain B, Unliganded E.Cloacae C115d Mura
pdb|3V5V|C Chain C, Unliganded E.Cloacae C115d Mura
pdb|3V5V|D Chain D, Unliganded E.Cloacae C115d Mura
Length = 419
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 TAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEA 78
T FEN+ V + + AHA + + +CHG + L A
Sbjct: 326 TIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGA 363
>pdb|3SWA|A Chain A, E. Cloacae Mura R120a Complex With Unag And Covalent
Adduct Of Pep With Cys115
pdb|3SWA|B Chain B, E. Cloacae Mura R120a Complex With Unag And Covalent
Adduct Of Pep With Cys115
Length = 419
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 TAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEA 78
T FEN+ V + + AHA + + +CHG + L A
Sbjct: 326 TIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGA 363
>pdb|3SU9|A Chain A, E. Cloacae Mura In Complex With Udp-N-Acetylmuramic Acid
And Covalent Adduct Of Pep With Cys115
pdb|3SWI|A Chain A, E. Cloacae Mura In Complex With
Enolpyruvyl-Udp-N-Acetylgalactosamine And Covalent
Adduct Of Pep With Cys115
Length = 419
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 TAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEA 78
T FEN+ V + + AHA + + +CHG + L A
Sbjct: 326 TIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGA 363
>pdb|1NAW|A Chain A, Enolpyruvyl Transferase
pdb|1NAW|B Chain B, Enolpyruvyl Transferase
Length = 419
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 41 TAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEA 78
T FEN+ V + + AHA + + +CHG + L A
Sbjct: 326 TIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGA 363
>pdb|4E94|A Chain A, Crystal Structure Of Mccf-Like Protein From Streptococcus
Pneumoniae
pdb|4E94|B Chain B, Crystal Structure Of Mccf-Like Protein From Streptococcus
Pneumoniae
pdb|4EYS|A Chain A, Crystal Structure Of Mccf-Like Protein From Streptococcus
Pneumoniae In Complex With Amp
Length = 346
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 24 TEFNRTCTGKEKLSHNNTAFE 44
T+F+ T G ++SH NT F+
Sbjct: 176 TDFSPTALGTPRVSHTNTGFD 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,735,673
Number of Sequences: 62578
Number of extensions: 135039
Number of successful extensions: 329
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 25
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)