Query psy15459
Match_columns 114
No_of_seqs 113 out of 1026
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 21:36:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06375 PBP1_mGluR_groupII Lig 99.9 1.4E-22 3E-27 139.0 9.6 107 1-113 314-427 (458)
2 cd06365 PBP1_Pheromone_recepto 99.9 1.9E-22 4E-27 138.8 9.7 108 1-113 314-426 (469)
3 cd06364 PBP1_CaSR Ligand-bindi 99.9 2.5E-21 5.5E-26 134.3 9.6 111 1-113 328-466 (510)
4 cd06376 PBP1_mGluR_groupIII Li 99.8 1.5E-19 3.2E-24 124.3 9.4 110 1-112 315-425 (463)
5 KOG1056|consensus 99.8 1.6E-19 3.4E-24 128.9 7.6 110 1-114 336-447 (878)
6 cd06374 PBP1_mGluR_groupI Liga 99.7 1.1E-17 2.3E-22 115.4 9.4 109 1-112 329-437 (472)
7 cd06362 PBP1_mGluR Ligand bind 99.7 2.3E-16 5.1E-21 108.2 9.6 107 1-112 314-420 (452)
8 cd06361 PBP1_GPC6A_like Ligand 99.1 2.3E-10 4.9E-15 78.0 6.8 58 48-112 310-367 (403)
9 cd06379 PBP1_iGluR_NMDA_NR1 N- 98.7 4E-08 8.7E-13 66.4 6.5 65 48-113 274-341 (377)
10 cd06367 PBP1_iGluR_NMDA N-term 98.5 6.6E-07 1.4E-11 60.1 6.5 64 48-112 259-327 (362)
11 cd06390 PBP1_iGluR_AMPA_GluR1 98.2 7.8E-06 1.7E-10 55.3 6.2 64 48-112 266-336 (364)
12 cd06363 PBP1_Taste_receptor Li 98.0 3.3E-05 7.1E-10 53.0 6.7 60 48-112 310-369 (410)
13 PF01094 ANF_receptor: Recepto 97.8 5.4E-05 1.2E-09 50.1 5.8 61 48-112 276-337 (348)
14 cd06392 PBP1_iGluR_delta_1 N-t 97.8 6.6E-05 1.4E-09 51.5 6.1 63 48-111 298-365 (400)
15 cd06372 PBP1_GC_G_like Ligand- 97.8 8.4E-05 1.8E-09 50.6 6.2 54 49-113 304-360 (391)
16 cd06370 PBP1_Speract_GC_like L 97.8 7.5E-05 1.6E-09 51.1 5.5 54 49-112 319-372 (404)
17 cd06387 PBP1_iGluR_AMPA_GluR3 97.6 0.00026 5.7E-09 48.2 6.2 62 48-111 274-343 (372)
18 cd06378 PBP1_iGluR_NMDA_NR2 N- 97.5 0.00041 9E-09 47.1 6.3 62 48-112 260-326 (362)
19 cd06391 PBP1_iGluR_delta_2 N-t 97.4 0.00059 1.3E-08 47.0 5.9 63 48-111 298-365 (400)
20 cd06389 PBP1_iGluR_AMPA_GluR2 97.3 0.0011 2.3E-08 45.2 6.0 63 48-112 271-341 (370)
21 cd06373 PBP1_NPR_like Ligand b 97.2 0.0012 2.6E-08 45.0 5.8 53 49-112 311-363 (396)
22 cd06388 PBP1_iGluR_AMPA_GluR4 97.1 0.0026 5.7E-08 43.3 6.2 63 48-112 272-342 (371)
23 cd06380 PBP1_iGluR_AMPA N-term 97.1 0.0032 6.9E-08 42.8 6.6 62 49-112 279-354 (382)
24 cd06386 PBP1_NPR_C_like Ligand 96.7 0.0064 1.4E-07 41.6 5.8 54 48-112 300-353 (387)
25 cd06352 PBP1_NPR_GC_like Ligan 96.7 0.0058 1.3E-07 41.5 5.4 54 48-112 304-357 (389)
26 cd06377 PBP1_iGluR_NMDA_NR3 N- 96.6 0.0068 1.5E-07 41.6 5.5 62 48-110 270-339 (382)
27 cd06383 PBP1_iGluR_AMPA_Like N 96.6 0.0018 3.8E-08 44.1 2.4 62 49-111 278-349 (368)
28 cd06369 PBP1_GC_C_enterotoxin_ 96.6 0.0096 2.1E-07 40.7 5.7 52 49-112 289-340 (380)
29 cd06385 PBP1_NPR_A Ligand-bind 96.5 0.0084 1.8E-07 41.1 5.4 53 49-112 313-365 (405)
30 cd06384 PBP1_NPR_B Ligand-bind 96.2 0.018 3.8E-07 39.5 5.4 53 49-112 314-366 (399)
31 cd06393 PBP1_iGluR_Kainate_Glu 96.1 0.023 4.9E-07 38.8 5.7 57 48-110 291-352 (384)
32 cd06371 PBP1_sensory_GC_DEF_li 95.9 0.024 5.3E-07 38.7 5.0 52 49-112 298-349 (382)
33 KOG4440|consensus 94.6 0.1 2.2E-06 38.2 5.1 65 49-113 286-353 (993)
34 cd06381 PBP1_iGluR_delta_like 90.2 0.3 6.6E-06 33.4 2.6 24 87-111 306-329 (363)
35 cd06342 PBP1_ABC_LIVBP_like Ty 90.0 0.86 1.9E-05 30.2 4.6 48 49-112 277-324 (334)
36 cd06348 PBP1_ABC_ligand_bindin 88.0 1.6 3.5E-05 29.2 4.9 58 49-112 279-336 (344)
37 KOG1054|consensus 86.6 3.2 7E-05 30.7 5.8 61 49-111 302-370 (897)
38 cd06345 PBP1_ABC_ligand_bindin 83.2 3.5 7.6E-05 27.6 4.7 48 49-112 289-336 (344)
39 KOG1053|consensus 80.9 5.8 0.00013 30.9 5.3 59 49-110 298-361 (1258)
40 KOG1055|consensus 72.6 7.2 0.00016 29.8 3.9 60 49-111 344-406 (865)
41 cd06332 PBP1_aromatic_compound 71.0 17 0.00037 23.9 5.3 50 49-112 275-324 (333)
42 PF03549 Tir_receptor_M: Trans 70.6 1.2 2.7E-05 21.9 -0.2 21 92-112 17-37 (66)
43 cd06338 PBP1_ABC_ligand_bindin 67.2 17 0.00037 24.3 4.6 48 49-112 289-336 (345)
44 cd06360 PBP1_alkylbenzenes_lik 60.9 34 0.00075 22.6 5.2 50 49-112 278-327 (336)
45 PF11396 DUF2874: Protein of u 49.6 10 0.00022 18.5 1.0 20 94-113 41-61 (61)
46 cd06359 PBP1_Nba_like Type I p 46.1 79 0.0017 21.1 5.1 50 49-112 275-324 (333)
47 cd06331 PBP1_AmiC_like Type I 43.3 82 0.0018 21.0 4.8 48 49-112 278-325 (333)
48 PRK15404 leucine ABC transport 42.1 63 0.0014 22.2 4.2 48 49-112 302-349 (369)
49 PF07661 MORN_2: MORN repeat v 36.0 31 0.00066 12.6 1.3 12 101-112 3-14 (22)
50 PF13433 Peripla_BP_5: Peripla 35.3 1.1E+02 0.0024 21.4 4.5 44 49-108 280-323 (363)
51 cd06355 PBP1_FmdD_like Peripla 33.3 1.5E+02 0.0032 20.0 4.9 44 50-109 280-323 (348)
52 KOG0437|consensus 31.8 49 0.0011 25.8 2.5 18 48-65 594-611 (1080)
53 cd06344 PBP1_ABC_ligand_bindin 27.9 1.3E+02 0.0028 20.0 3.9 48 49-112 276-324 (332)
54 PF01473 CW_binding_1: Putativ 27.8 43 0.00093 12.1 1.0 12 100-111 7-18 (19)
55 cd06358 PBP1_NHase Type I peri 23.9 2.3E+02 0.0049 18.9 5.2 46 50-111 279-324 (333)
56 cd06357 PBP1_AmiC Periplasmic 23.0 2.5E+02 0.0055 19.1 4.9 46 49-110 280-325 (360)
57 PRK15202 type III secretion ch 21.9 69 0.0015 18.2 1.4 15 99-113 26-40 (117)
58 TIGR03407 urea_ABC_UrtA urea A 20.6 2.9E+02 0.0062 18.8 4.9 43 50-108 281-323 (359)
59 cd06347 PBP1_ABC_ligand_bindin 20.2 2.7E+02 0.0058 18.3 4.5 47 50-112 279-326 (334)
No 1
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=99.89 E-value=1.4e-22 Score=139.03 Aligned_cols=107 Identities=36% Similarity=0.631 Sum_probs=82.6
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCc-cchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTA-FENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAM 79 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~-~~~~~~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~ 79 (114)
|++++|+..|+|...... . ....|++.+.+...... .....+.||+||||+|||||+|+++.|....+.|+.+
T Consensus 314 w~~e~w~~~f~c~~~~~~-----~-~~~~C~~~~~~~~~~~~~~~~~~~~v~~AVyA~AhaLh~~l~~~c~~~~~~c~~~ 387 (458)
T cd06375 314 WFKDFWEQKFQCSLQNRD-----C-ANTTTNDKERLLDKVNYEQESKIMFVVNAVYAMAHALHNMQRDLCPNTTKLCDAM 387 (458)
T ss_pred HHHHHHHHHcCCCCCCCC-----c-cCCCCCchhcccccCcccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 578999999999864321 1 23479887776542111 1114578999999999999999987786544678876
Q ss_pred CCCCchHHH-Hhhccceee-----cCCCCeEEEcCCCCcC
Q psy15459 80 KPTKGSDLL-KYLRKVDFR-----GGPSQAAKMTAGWTSL 113 (114)
Q Consensus 80 ~~~~~~~L~-~~L~~v~f~-----~~~~~~~~F~~~g~~~ 113 (114)
..+.+|+|+ .|||+|+|+ +..|+.+.||++|++.
T Consensus 388 ~~~~~~~l~~~~L~~v~F~~~~~~~~~g~~v~Fd~nGd~~ 427 (458)
T cd06375 388 KPLDGKKLYKEYLLNVSFTAPFRPDLADSEVKFDSQGDGL 427 (458)
T ss_pred CCCCHHHHHHHHHHhccccccccCCCCCCeeEECCCCCCC
Confidence 778899999 599999999 8889999999999974
No 2
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=99.88 E-value=1.9e-22 Score=138.75 Aligned_cols=108 Identities=16% Similarity=0.217 Sum_probs=79.5
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCccch-----hhHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFEN-----QLQFVSDAVMAFAHALNDMHKELCHGKKGL 75 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~-----~~~~v~~aV~ala~aLh~~~~~~~~~~~~~ 75 (114)
|+++||+..|+|.+... .......|++++.+........+ ..++||+||||+|||||+|+.|.|...+..
T Consensus 314 w~~efwe~~f~c~~~~~-----~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~v~dAVya~AhALh~~l~c~~~~~~~~ 388 (469)
T cd06365 314 FLEKLWWIYFNCSLSKS-----SCKTLKNCLSNASLEWLPLHYFDMAMSEESYNVYNAVYAVAHALHEMLLQQVETQSEN 388 (469)
T ss_pred HHHhhHhHhcCcccCcC-----CccccCCCCCCccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcC
Confidence 67899999999986432 11123469888877644321111 346799999999999999998655322222
Q ss_pred CCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCcC
Q psy15459 76 CEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTSL 113 (114)
Q Consensus 76 ~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~~ 113 (114)
|.....+.+|||++|||+|+|++.+|+++.||+||++.
T Consensus 389 ~~~~~~~~~~~l~~~l~~v~F~~~~g~~v~Fd~nGd~~ 426 (469)
T cd06365 389 NGKRLIFLPWQLHSFLKNIQFKNPAGDEVNLNQKRKLD 426 (469)
T ss_pred CCCCCCccHHHHHHHHHhccccCCCCCEEEecCCCCcC
Confidence 33345678999999999999999999999999999974
No 3
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=99.86 E-value=2.5e-21 Score=134.27 Aligned_cols=111 Identities=29% Similarity=0.551 Sum_probs=80.6
Q ss_pred ChHHhhccCCCCcCCCCCCCC--------------C--C-C-cCcccCCCccccCCCCCccch-----hhHHHHHHHHHH
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTP--------------Y--N-T-EFNRTCTGKEKLSHNNTAFEN-----QLQFVSDAVMAF 57 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~--------------~--~-~-~~~~~C~~~~~l~~~~~~~~~-----~~~~v~~aV~al 57 (114)
|++++|+..|+|.++...... . + . ...+.|++.+.+......+.+ ..++||+||||+
T Consensus 328 ~~~~~we~~f~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~AVyAv 407 (510)
T cd06364 328 FAKEFWEETFNCYLEDSPKNALPVDTFLGHEESGDDSENGSTAFRPLCTGDENIASVETPYLDYTHLRISYNVYLAVYSI 407 (510)
T ss_pred HHHHHHHHhcCCCCCCCcccccccccccccccccccccccccccCCCCCChhhhcccCCccccccchhhHHHHHHHHHHH
Confidence 578999999999864310000 0 0 0 112479988887643322221 346899999999
Q ss_pred HHHHHHHHhhhcCC-C----CCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCcC
Q psy15459 58 AHALNDMHKELCHG-K----KGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTSL 113 (114)
Q Consensus 58 a~aLh~~~~~~~~~-~----~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~~ 113 (114)
|||||+|+. |.. . ++.|..+..+.+|||++|||+|+|++..|+.+.||++|++.
T Consensus 408 AhaLh~~~~--c~~~~~~~~~~~c~~~~~~~~~~l~~~L~~v~F~~~~g~~v~Fd~~Gd~~ 466 (510)
T cd06364 408 AHALQDIYT--CTPGKGLFTNGSCADIKKVEAWQVLKHLRHLNFTDNMGEQVRFDEGGDLV 466 (510)
T ss_pred HHHHHHHhc--CCCCCCCccCCCCCCCCCCCHHHHHHHHHhcEEecCCCCEEEEecCCCCc
Confidence 999999996 532 1 25687666788999999999999999999999999999974
No 4
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.81 E-value=1.5e-19 Score=124.27 Aligned_cols=110 Identities=39% Similarity=0.792 Sum_probs=80.5
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCccch-hhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFEN-QLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAM 79 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~-~~~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~ 79 (114)
|+.++|+..|+|.++....+ .....+.|++.+.+........+ ....||+||||+|||||+|+.+.|.+....|...
T Consensus 315 ~~~~~w~~~f~c~~~~~~~~--~~~~~~~C~~~~~~~~~~~~~~~~~~~~v~dAVyaiA~ALh~l~~~~c~~~~~~C~~~ 392 (463)
T cd06376 315 WFAEFWEENFNCKLTISGSK--KEDTDRKCTGQERIGRDSTYEQEGKVQFVIDAVYAMAHALHSMHKDLCPGYTGVCPEM 392 (463)
T ss_pred HHHHHHHHhCCCcccCCCCc--cccccCcCcchhhccccCcccccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCCCccC
Confidence 46789999999976421100 01123579988876433221111 3567999999999999999977775434568765
Q ss_pred CCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 80 KPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 80 ~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
....+|+|++|||+|+|++.+|+.+.||++|+.
T Consensus 393 ~~~~~~~l~~~L~~v~F~g~tg~~v~Fd~~G~~ 425 (463)
T cd06376 393 EPADGKKLLKYIRAVNFNGSAGTPVMFNENGDA 425 (463)
T ss_pred CCCCHHHHHHHHHhCCccCCCCCeEEeCCCCCC
Confidence 567789999999999999999999999999984
No 5
>KOG1056|consensus
Probab=99.80 E-value=1.6e-19 Score=128.93 Aligned_cols=110 Identities=44% Similarity=0.779 Sum_probs=87.2
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCccch--hhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFEN--QLQFVSDAVMAFAHALNDMHKELCHGKKGLCEA 78 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~--~~~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~ 78 (114)
|++|+|+..|.|.+..... ......+.|++.++..... .+.. ..+.|++|||++|||||+|++++|.+..+.|+.
T Consensus 336 w~~e~w~~~f~C~l~~~~~--~~~~~~~~Ct~~e~~~~~~-~~~q~~k~~~Vi~aVya~A~aLh~m~~~lc~~~~~~C~~ 412 (878)
T KOG1056|consen 336 WFAEFWEDKFNCSLPNSAF--KNENLIRLCTAVERITLDS-AYEQDSKVQFVIDAVYAMAHALHNMHQDLCPGTSGLCSA 412 (878)
T ss_pred ccchhhhhcccCCCCcccc--cchhhhhhcccchhhcccc-chhhhcccccHHHHHHHHHHHHHHHHHhhcCCccccCcC
Confidence 5689999999998753210 1123457899998664321 1121 457899999999999999999999877788998
Q ss_pred CCCCCchHHHHhhccceeecCCCCeEEEcCCCCcCC
Q psy15459 79 MKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTSLF 114 (114)
Q Consensus 79 ~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~~~ 114 (114)
+..+.+|+|+.|+++|+|++..|. +.||++||.|.
T Consensus 413 m~~~dg~~L~~~l~~vnF~~~~~~-v~Fd~~gD~~~ 447 (878)
T KOG1056|consen 413 MKAIDGSLLLKYLLNVNFTGPAGS-VRFDENGDGPG 447 (878)
T ss_pred ccccCHHHHHhhhheeEEecCCCc-eeecCCCCCcc
Confidence 888999999999999999988777 99999999874
No 6
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.75 E-value=1.1e-17 Score=115.42 Aligned_cols=109 Identities=37% Similarity=0.772 Sum_probs=77.7
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAMK 80 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~ 80 (114)
|+.++|+..|.|.++.... ........|++.+.+...... ......+|+||||+|||||+|+.+.|......|....
T Consensus 329 ~~~~~w~~~f~c~~~~~~~--~~~~~~~~c~~~~~~~~~~~~-~~~~~~vyDAVyaiA~ALh~~~~~~~~~~~~~c~~~~ 405 (472)
T cd06374 329 WFREFWQHRFQCRLPGHPQ--ENPNYIKICTGNESLDEQYVQ-DSKMGFVINAIYAMAHGLHNMHQDLCPGHVGLCDAMK 405 (472)
T ss_pred HHHHHHHHhcCCCcCCccC--cCCccCCCCCCcccccccccc-cceeHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCCC
Confidence 4688999999997632110 011123468877765432110 0122369999999999999998766744345576545
Q ss_pred CCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 81 PTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 81 ~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
.+.+++|+.+|++++|++.+|+.+.||++|+.
T Consensus 406 ~~~~~~l~~~l~~v~F~g~tG~~v~Fd~~G~~ 437 (472)
T cd06374 406 PIDGRKLLEYLLKTSFSGVSGEEVYFDENGDS 437 (472)
T ss_pred CCCHHHHHHHHHhCcccCCCCCeEEEcCCCCC
Confidence 67789999999999999999999999999986
No 7
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=99.69 E-value=2.3e-16 Score=108.15 Aligned_cols=107 Identities=44% Similarity=0.757 Sum_probs=75.5
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAMK 80 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~ 80 (114)
|++++|+..|.|...... .......|++.+.+... .........+|+|||++|+|||+++.+.|......|....
T Consensus 314 ~~~~~w~~~~~c~~~~~~----~~~~~~~c~~~~~~~~~-~~~~~~~~~vyDAV~a~A~AL~~~l~~~~~~~~~~c~~~~ 388 (452)
T cd06362 314 WFREFWEQKFNCKLTGNG----STKDNTCCTERILLLSN-YEQESKVQFVIDAVYAMAHALHNMHRDLCPGTTGLCDAMK 388 (452)
T ss_pred HHHHHHHHhcCCCcCCCC----ccccCCCCccccccccc-cccccchhHHHHHHHHHHHHHHHHHHhhCCCCCCCCcCcc
Confidence 467899999999753221 00112368766554321 1111124579999999999999998766654345576444
Q ss_pred CCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 81 PTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 81 ~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
...+++|+.+|++++|++.+|..+.||++|+.
T Consensus 389 ~~~~~~l~~~l~~v~f~g~tg~~v~Fd~~G~~ 420 (452)
T cd06362 389 PIDGRKLLFYLRNVSFSGLAGGPVRFDANGDG 420 (452)
T ss_pred CCCHHHHHHHHHhCCcCCCCCceEEECCCCCC
Confidence 56789999999999999999989999999986
No 8
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=99.12 E-value=2.3e-10 Score=78.00 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
+.++.|||++|||||++.. | ..|.......+|+|+.+|++++|.+. +.++.||++|+.
T Consensus 310 ~~v~~AVyaiA~Al~~~~~--~----~~c~~~~~~~~~~l~~~L~~~~f~g~-~~~v~Fd~~gd~ 367 (403)
T cd06361 310 HSIQLAVFALAHAIRDLCQ--E----RQCQNPNAFQPWELLGQLKNVTFEDG-GNMYHFDANGDL 367 (403)
T ss_pred HHHHHHHHHHHHHHHHhcc--C----CCCCCCCCcCHHHHHHHHheeEEecC-CceEEECCCCCC
Confidence 4689999999999999732 2 34765556789999999999999987 788999999986
No 9
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=98.74 E-value=4e-08 Score=66.35 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CCCCCCCCCCC--CCCchHHHHhhccceeecCCCCeEEEcCCCCcC
Q psy15459 48 QFVSDAVMAFAHALNDMHKELC-HGKKGLCEAMK--PTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTSL 113 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~-~~~~~~~~~~~--~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~~ 113 (114)
..+|+|||++|+|||++..+.. ......|.... ...+++|.++|++++|.+.+|+ +.||++|+..
T Consensus 274 ~~~yDAV~~~A~Al~~~~~~~~~~~~~~~c~~~~~~~~~g~~l~~~l~~v~f~G~tg~-i~Fd~~Gd~~ 341 (377)
T cd06379 274 SHIRDAVAVLASAIQELFEKENITEPPRECVGNTVIWETGPLFKRALMSSKYPGETGR-VEFNDDGDRK 341 (377)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCcchHHHHHHHHhCCcCCccCc-eEECCCCCcc
Confidence 4699999999999999975222 11234464321 1245689999999999998775 9999999863
No 10
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=98.47 E-value=6.6e-07 Score=60.14 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC--CCCCCCCCCCC---CCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCH--GKKGLCEAMKP---TKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~--~~~~~~~~~~~---~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+||+++|+|+|+++.+... .....|..... ..+-.|.++|++++|.+.+| .+.||++|+.
T Consensus 259 ~~~~Dav~~~a~Al~~~~~~~~~~~~~~~~C~~~~~~~~~~g~~l~~~l~~~~f~G~tg-~v~F~~~G~~ 327 (362)
T cd06367 259 ARVRDAVAIVARAAESLLRDKGALPEPPVNCYDTANKRESSGQYLARFLMNVTFDGETG-DVSFNEDGYL 327 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCCCCCCCCchHHHHHHHhcccccCCCC-ceeECCCccc
Confidence 45899999999999999863111 11334654321 23347899999999999888 4999999974
No 11
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=98.16 E-value=7.8e-06 Score=55.35 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCC----CCCCCCCCCC---CchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGK----KGLCEAMKPT---KGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~----~~~~~~~~~~---~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+||+++|+|++++....+... ...|...... .+..|.++|++++|.+.+|+ +.||++|..
T Consensus 266 ~l~yDaV~~~A~A~~~l~~~~~~~~~~~~~~~C~~~~~~~w~~G~~l~~~i~~~~f~GlTG~-i~F~~~G~r 336 (364)
T cd06390 266 ALTYDGVRVMAEAFQNLRKQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGN-VQFNEKGRR 336 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCCCCccHHHHHHHHHhhcccccccc-eeeCCCCCc
Confidence 3589999999999999854222111 1256432111 23479999999999999998 999998853
No 12
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=97.99 E-value=3.3e-05 Score=52.97 Aligned_cols=60 Identities=30% Similarity=0.361 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+|||++|+|+|.++. |. ...|....+..++.|..+|+++.|.+..| .+.||++|+.
T Consensus 310 ~~~YDaV~~~a~Al~~a~~--~~--~~~~~~~~~~~~~~l~~~L~~~~~~g~~g-~i~fd~~G~~ 369 (410)
T cd06363 310 FSVYAAVYAVAHALHNVLQ--CG--SGGCPKRVPVYPWQLLEELKKVNFTLLGQ-TVRFDENGDP 369 (410)
T ss_pred HHHHHHHHHHHHHHHHHhC--CC--CCCCCCCCCCCHHHHHHHHhccEEecCCc-EEEeCCCCCC
Confidence 3589999999999999864 21 12343223446788999999999987655 7999999984
No 13
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=97.85 E-value=5.4e-05 Score=50.13 Aligned_cols=61 Identities=33% Similarity=0.406 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcC-CCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTA-GWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~-~g~~ 112 (114)
..+|+||+++|+|++++.+..+...... .....+.+|.++|+++.|.+.+|+ +.||+ .|+.
T Consensus 276 ~~~yDAv~~~a~al~~~~~~~~~~~~~~---~~~~~g~~l~~~l~~~~f~G~tG~-v~f~~~~G~~ 337 (348)
T PF01094_consen 276 AYAYDAVYLLAHALNRALQDGGPVTNGR---NPWQNGSQLLKYLRNVSFEGLTGR-VSFDSNDGDR 337 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTSSS---GTSTTHHHHHHHHHTEEEEETTEE-EEEETTTSBE
T ss_pred eeehhhhHHHHHHHHHHHHhccCCCCCc---cccccHHHHHHHHhheeeeCCCCC-EEEeCCCCCc
Confidence 4689999999999999987555321111 112235589999999999999886 88888 7764
No 14
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=97.84 E-value=6.6e-05 Score=51.55 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-cCC-CCCCCCC--CCCC-CchHHHHhhccceeecCCCCeEEEcCCCC
Q psy15459 48 QFVSDAVMAFAHALNDMHKEL-CHG-KKGLCEA--MKPT-KGSDLLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~-~~~-~~~~~~~--~~~~-~~~~L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
-.+|+||+++|+|+++++... -.. ..-.|.. ..+. .+..|..+|+.++|++.+|+ +.||++|.
T Consensus 298 alayDaV~~~A~Al~~ll~~~~~~~~~~l~C~~~~~~~w~~G~~ll~~ik~v~f~GLTG~-I~F~~~G~ 365 (400)
T cd06392 298 LYLYDSVLMLANAFHRKLEDRKWHSMASLNCIRKSTKPWNGGRSMLETIKKGHITGLTGV-MEFKEDGA 365 (400)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCccCCCCCCCCCChHHHHHHHHhCCCccCccc-eeECCCCC
Confidence 358999999999999875211 111 1223521 1111 13369999999999999988 89999885
No 15
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=97.81 E-value=8.4e-05 Score=50.56 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhc---cceeecCCCCeEEEcCCCCcC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLR---KVDFRGGPSQAAKMTAGWTSL 113 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~---~v~f~~~~~~~~~F~~~g~~~ 113 (114)
.+|+|||++|+||++++. +. .....+-+|...|+ +++|.+.+|. +.||++|+..
T Consensus 304 ~~yDav~~~A~Al~~~~~--~g--------~~~~~g~~l~~~l~~~~~~~f~G~tG~-v~fd~~G~r~ 360 (391)
T cd06372 304 YLHDAVLLYALAVKEMLK--AG--------KDFRNGRQLVSTLRGANQVELQGITGL-VLLDEQGKRQ 360 (391)
T ss_pred HHHHHHHHHHHHHHHHHh--cC--------CCCCCHHHHHHHHhhccCceEecccee-EEECCCCCcc
Confidence 589999999999999863 21 01123457888898 6999999995 9999999863
No 16
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=97.77 E-value=7.5e-05 Score=51.13 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+||+++|+||++++.... ....+-+|..+|++++|.+.+|..+.||++|+.
T Consensus 319 ~~yDAv~~~a~Al~~~~~~~~----------~~~~g~~i~~~l~~~~f~GvtG~~v~fd~~G~~ 372 (404)
T cd06370 319 YLYDAVMLYAKALDETLLEGG----------DIYNGTAIVSHILNRTYRSITGFDMYIDENGDA 372 (404)
T ss_pred hhHHHHHHHHHHHHHHHHhcC----------CCCCHHHHHHHHhCcccccccCceEEEcCCCCc
Confidence 579999999999999864111 112355788999999999999977999999985
No 17
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=97.61 E-value=0.00026 Score=48.23 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC----CCCCCCCCCCCCCch----HHHHhhccceeecCCCCeEEEcCCCC
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCH----GKKGLCEAMKPTKGS----DLLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~----~~~~~~~~~~~~~~~----~L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
..+|+||+++|.|++++....-. +.+..|.... -.+| .|..+|+++.|.+.+|+ +.|+++|.
T Consensus 274 al~yDaV~~~A~A~~~l~~~~~~~~~~~~~~~C~~~~-~~~W~~G~~l~~~ik~v~~~GLTG~-i~F~~~G~ 343 (372)
T cd06387 274 ALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANP-AVPWSQGIDIERALKMVQVQGMTGN-IQFDTYGR 343 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCcCCCC-CCCccchHHHHHHHHhcccCCCccc-eeeCCCCC
Confidence 35899999999999987421110 0122563221 1234 68999999999998887 89999884
No 18
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=97.53 E-value=0.00041 Score=47.07 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc--CCCCCCCCCCCCC---CchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELC--HGKKGLCEAMKPT---KGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~--~~~~~~~~~~~~~---~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+||+.+|+|++.|+.... ......|...... .+-.|++||++++|.+ ..+.||++|..
T Consensus 260 a~~~DaV~vva~Al~~l~~~~~~~~~~~~~C~~~~~~~~~~G~~l~~~l~~v~~~G---~~i~F~~~G~r 326 (362)
T cd06378 260 ARVRDGVAIIATGASAMLRQHGFIPEAKGSCYGQAEKRDLPPNTLHRYMMNVTWEG---RDLSFTEDGYL 326 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCcCCCCCCCCCchHHHHHHhhcceECC---CceeECCCCeE
Confidence 3589999999999999863111 1113346432111 2337999999999975 37999999853
No 19
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=97.40 E-value=0.00059 Score=46.96 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-CC-CCCCCCCCC--CC-CchHHHHhhccceeecCCCCeEEEcCCCC
Q psy15459 48 QFVSDAVMAFAHALNDMHKELC-HG-KKGLCEAMK--PT-KGSDLLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~-~~-~~~~~~~~~--~~-~~~~L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
..+|+||+++|.|++++....- .. ....|.... +. .+-.|..+|++++|++.+|+ +.|+++|.
T Consensus 298 alayDaV~~~A~A~~~l~~~~~~~~~~~~~c~~~~~~~w~~G~~ll~~i~~~~f~GlTG~-i~f~~~g~ 365 (400)
T cd06391 298 LYIYDTVLLLANAFHKKLEDRKWHSMASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGE-LEFNENGG 365 (400)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccCCCCcccccCCCCCCCChHHHHHHHHhcCcccceec-eEECCCCC
Confidence 3589999999999998742110 00 112343210 11 23379999999999999887 89999884
No 20
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=97.28 E-value=0.0011 Score=45.16 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC----CCCCCCCCCCCCCch----HHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCH----GKKGLCEAMKPTKGS----DLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~----~~~~~~~~~~~~~~~----~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
-.+|+||+.+|.|+.++....-. +....|... +-.+| .|..+|+++.|.+.+|+ +.||++|+.
T Consensus 271 Al~yDAV~v~a~A~~~l~~~~~~~~~~~~~~~C~~~-~~~~w~~G~~i~~~l~~~~~~GlTG~-i~Fd~~G~r 341 (370)
T cd06389 271 ALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLAN-PAVPWGQGVEIERALKQVQVEGLTGN-IKFDQNGKR 341 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCcCCC-CCCCCCCcHHHHHHHHhcccCccccc-eEeCCCCcc
Confidence 35899999999999987421100 012256422 12234 68999999999988886 899999864
No 21
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=97.22 E-value=0.0012 Score=45.04 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+||+++|.||+++.. +. + ....+.+|...|+++.|.+..|+ +.||++|+.
T Consensus 311 ~~YDav~~~a~Al~~~~~--~~---~-----~~~~~~~i~~~l~~~~f~G~tG~-v~fd~~G~~ 363 (396)
T cd06373 311 AFYDAVLLYALALNETLA--EG---G-----DPRDGTNITRRMWNRTFEGITGN-VSIDENGDR 363 (396)
T ss_pred HHHHHHHHHHHHHHHHHh--cc---C-----CCCChHHHHHHhcCCceecccCc-eEeecCCcc
Confidence 479999999999999853 11 1 11346789999999999988886 999999975
No 22
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=97.06 E-value=0.0026 Score=43.35 Aligned_cols=63 Identities=21% Similarity=0.345 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC----CCCCCCCCCCCCCch----HHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCH----GKKGLCEAMKPTKGS----DLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~----~~~~~~~~~~~~~~~----~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
-.+|+||+++|.|+.++....-. +.+..|... +..+| .|..+|+++.|.+.+|+ +.||++|+.
T Consensus 272 Al~YDaV~l~a~A~~~l~~~~~~~~~~~~~~~C~~~-~~~~w~~G~~i~~~lk~~~~~GlTG~-i~Fd~~G~r 342 (371)
T cd06388 272 ALTYDGVLVMAEAFRNLRRQKIDISRRGNAGDCLAN-PAAPWGQGIDMERTLKQVRIQGLTGN-IQFDHYGRR 342 (371)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCCCCCCcCCC-CCCCCcccHHHHHHHHhcCcCCCccc-eeECCCCCc
Confidence 35899999999999987321010 011256321 22344 58999999999988885 899999864
No 23
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=97.05 E-value=0.0032 Score=42.76 Aligned_cols=62 Identities=27% Similarity=0.454 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh----------cCCCCCCCCCCCCC----CchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKEL----------CHGKKGLCEAMKPT----KGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~----------~~~~~~~~~~~~~~----~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
.+|+||+++|.|++++.... .......|... .. .+-.|..+|+++.|.+.+|+ +.||++|+.
T Consensus 279 ~aYDav~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~C~~~-~~~~~~~g~~i~~~l~~~~~~G~tG~-i~Fd~~G~~ 354 (382)
T cd06380 279 LAHDAVLVMAEAFRSLRRQRGSGRHRIDISRRGNGGDCLAN-PAVPWEHGIDIERALKKVQFEGLTGN-VQFDEFGQR 354 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccCCCCCcCCCC-CCCCccchHHHHHHHHhcccCCcccc-eEECCCCCc
Confidence 58999999999999875311 00012234321 21 23468999999999988776 899999874
No 24
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=96.71 E-value=0.0064 Score=41.58 Aligned_cols=54 Identities=22% Similarity=0.352 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
...|+||+++|+||.+.+. .+. ...++-.|...++++.|.+.+|. +.||++|+.
T Consensus 300 a~~yDav~l~A~Al~~~~~---~g~-------~~~~g~~l~~~l~~~~f~G~tG~-v~~d~~g~r 353 (387)
T cd06386 300 EGFHDAILLYALALHEVLK---NGY-------SKKDGTKITQRMWNRTFEGIAGQ-VSIDANGDR 353 (387)
T ss_pred HHHHHHHHHHHHHHHHHhh---CCC-------CCCCHHHHHHHHhCCceeecccc-EEECCCCCc
Confidence 3589999999999998752 110 11234568899999999999996 999999874
No 25
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=96.66 E-value=0.0058 Score=41.52 Aligned_cols=54 Identities=22% Similarity=0.312 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
...|+||+++|+|++.+.. +. . ....+.++...|+++.|.+..| .+.||++|+.
T Consensus 304 ~~~YDav~~~a~Al~~~~~--~~---~-----~~~~~~~v~~~l~~~~f~g~~G-~v~fd~~G~~ 357 (389)
T cd06352 304 GYLYDAVLLYAHALNETLA--EG---G-----DYNGGLIITRRMWNRTFSGITG-PVTIDENGDR 357 (389)
T ss_pred hhHHHHHHHHHHHHHHHHH--hC---C-----CCCchHHHHHHhcCcEEEeeee-eEEEcCCCCe
Confidence 3589999999999999853 11 0 0123567888999999998766 4899999975
No 26
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=96.63 E-value=0.0068 Score=41.60 Aligned_cols=62 Identities=24% Similarity=0.332 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHh---hhc-CCCCCCCCCC--C-CC-CchHHHHhhccceeecCCCCeEEEcCCC
Q psy15459 48 QFVSDAVMAFAHALNDMHK---ELC-HGKKGLCEAM--K-PT-KGSDLLKYLRKVDFRGGPSQAAKMTAGW 110 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~---~~~-~~~~~~~~~~--~-~~-~~~~L~~~L~~v~f~~~~~~~~~F~~~g 110 (114)
..+++||+.+|.|++.+.. ..- ......|... . .. .+..|.+||+++.|.+.+|. |.|++.+
T Consensus 270 ali~DAV~lvA~a~~~l~~~~~~~~l~~~~~~C~~~~~~~~W~~G~~l~~~Lknv~~eGlTG~-I~F~~g~ 339 (382)
T cd06377 270 AYVQDALELVARAVGSATLVQPELALIPATVNCMDLPTKGNESSGQYLARFLANTSFDGRTGP-VWVTGSS 339 (382)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccCCCCCCcccCCCCCCCCchHHHHHHHHhCccccccee-EEEccCe
Confidence 4689999999999998731 001 1123457432 1 11 23469999999999998886 7886543
No 27
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=96.57 E-value=0.0018 Score=44.13 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHh----hhcCCCCC-CCCCCCCCCch-----HHHHhhccceeecCCCCeEEEcCCCC
Q psy15459 49 FVSDAVMAFAHALNDMHK----ELCHGKKG-LCEAMKPTKGS-----DLLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~----~~~~~~~~-~~~~~~~~~~~-----~L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
.+|+||+++|.|++++.. ..|.+... -|....+..+| .+..|||.+.|.+.+|. |.||++|.
T Consensus 278 L~~Dav~~~~~a~~~l~~~~~~~~~~~~~~~~~~g~~~~~~w~~~g~~~~~~~k~~~~~gltG~-i~f~~~g~ 349 (368)
T cd06383 278 LAYDAVLAVGEWPRRMRKKRVEDGSTGTSVLPGFGISPESPLMTLQSSPFNGSSEIKFEMLAGR-VAIDEGSS 349 (368)
T ss_pred HHHHHHHHhccccchhheeeccCCCcCccccCCCCCCcccchhhcccccccCccceeEeeecCe-EEEecCce
Confidence 589999999999998631 01211011 23322212356 88999999999998887 89998874
No 28
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=96.56 E-value=0.0096 Score=40.67 Aligned_cols=52 Identities=15% Similarity=0.277 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+||...|+||++.+.. + + . ....++-+-++|.+|.+..|. +.+|+|||-
T Consensus 289 ~fyDaVLLYa~AL~EtL~~---G--~---~---~~~~~I~~~m~NrTF~GitG~-V~IDeNGDR 340 (380)
T cd06369 289 AYHDGVLLFGHVLKKFLES---Q--E---G---VQTFSFINEFRNISFEGAGGP-YTLDEYGDR 340 (380)
T ss_pred HHHHHHHHHHHHHHHHHHh---C--C---C---CCcHHHHHHHhCcceecCCCc-eEeCCCCCc
Confidence 4689999999999998741 1 1 1 112457777899999999999 999999984
No 29
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=96.51 E-value=0.0084 Score=41.11 Aligned_cols=53 Identities=26% Similarity=0.372 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+||+++|.||++.... . + ...++-.|...|+++.|.+..|. +.||++|+.
T Consensus 313 ~~YDav~l~a~Al~~~~~~---~--~-----~~~~g~~i~~~l~~~~f~G~tG~-v~fd~~G~r 365 (405)
T cd06385 313 GFYDGVMLYAHALNETMAK---G--G-----TRPPGTAITQRMWNRTFYGVTGF-VKIDDNGDR 365 (405)
T ss_pred HHHHHHHHHHHHHHHHHhc---C--C-----CCCCHHHHHHHhhCceEeeceeE-EEEcCCCCE
Confidence 3799999999999987531 0 1 00124468888999999998886 999999975
No 30
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=96.15 E-value=0.018 Score=39.54 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+||+.+|.||...+.. . + ....+-.+...|+++.|.+..|. +.||++|+.
T Consensus 314 ~~YDav~l~a~Al~~~~~~--~---~-----~~~~g~~i~~~l~~~~f~GvtG~-v~fd~~G~r 366 (399)
T cd06384 314 CFYDGVMLYAMALNETLAE--G---G-----SQKDGLNITRKMQDRRFWGVTGL-VSIDKNNDR 366 (399)
T ss_pred hhHHHHHHHHHHHHHHHhc--C---C-----CCCCcHhHHHHHhCceeecceeE-EEECCCCCc
Confidence 4899999999999987531 1 1 00124468899999999998886 999999975
No 31
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=96.09 E-value=0.023 Score=38.83 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCch----HHHHhhccceeecCCCCeEEEcC-CC
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGS----DLLKYLRKVDFRGGPSQAAKMTA-GW 110 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~----~L~~~L~~v~f~~~~~~~~~F~~-~g 110 (114)
-.+|+||+++|.|++..... ....-.|... .+| .|..+|+++.|.+.+|+ +.||+ +|
T Consensus 291 al~yDav~~~a~A~~~~~~~--~~~~~~c~~~---~~w~~G~~i~~~l~~~~~~GltG~-i~Fd~~~g 352 (384)
T cd06393 291 ALLYDAVHMVSVCYQRAPQM--TVNSLQCHRH---KAWRFGGRFMNFIKEAQWEGLTGR-IVFNKTSG 352 (384)
T ss_pred HHhhhhHHHHHHHHhhhhhc--CCCCCCCCCC---CCCcccHHHHHHHhheeecccccc-eEecCCCC
Confidence 35899999999999865321 0011235321 244 68999999999999887 89996 44
No 32
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=95.86 E-value=0.024 Score=38.72 Aligned_cols=52 Identities=21% Similarity=0.433 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+||+++|.|+.+... .+ + ...+-+|.+.|++..|.+..|. +.||++|+.
T Consensus 298 ~~YDav~~~a~Al~~a~~---~g--~------~~d~~~l~~~l~~~~f~GvtG~-v~fd~~g~~ 349 (382)
T cd06371 298 TIYNSIYLLAHAVENARA---AG--G------GVSGANLAQHTRNLEFQGFNQR-LRTDSGGGG 349 (382)
T ss_pred HHHHHHHHHHHHHHHHHH---hC--C------CccHHHHHHHHhCccccccceE-EEecCCCCc
Confidence 379999999999998753 11 1 1234578899999999998887 999999874
No 33
>KOG4440|consensus
Probab=94.64 E-value=0.1 Score=38.18 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhc-CCCCCCC-CCCCCCCch-HHHHhhccceeecCCCCeEEEcCCCCcC
Q psy15459 49 FVSDAVMAFAHALNDMHKELC-HGKKGLC-EAMKPTKGS-DLLKYLRKVDFRGGPSQAAKMTAGWTSL 113 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~-~~~~~~~-~~~~~~~~~-~L~~~L~~v~f~~~~~~~~~F~~~g~~~ 113 (114)
-+-++|+.+|.|+|.|+...- ...+..| +.......| .|.++|....+.+..-..+.||++|+-.
T Consensus 286 hirDsv~vlasAv~e~~~~e~I~~~P~~c~d~~~~w~~g~~l~~~l~s~~~~~g~TgrV~Fnd~gdRi 353 (993)
T KOG4440|consen 286 HIRDSVGVLASAVHELLEKENITDPPRGCVDNTNIWKTGPLLKRVLMSSKYADGVTGRVEFNDDGDRI 353 (993)
T ss_pred eehhhHHHHHHHHHHHHhhccCCCCCCcccCccchhcccHHHHHHHhhhcccCCcceeEEEcCCCcee
Confidence 366899999999999985322 1122334 322222344 3556776656655544569999999864
No 34
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=90.21 E-value=0.3 Score=33.36 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=17.3
Q ss_pred HHHhhccceeecCCCCeEEEcCCCC
Q psy15459 87 LLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 87 L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
+..+||++.|.+.+|+ +.||++|.
T Consensus 306 ~~~~~~~~~~~GLTG~-i~F~~~g~ 329 (363)
T cd06381 306 LLETIKKGPITGLTGK-LEFNEGGD 329 (363)
T ss_pred HHHHHHhcCccCccee-EEeCCCCC
Confidence 3567788888877776 77877764
No 35
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=89.96 E-value=0.86 Score=30.18 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+++..++.|+++.- ...+-.|...|+.+.|.+..|+ +.|+++|+.
T Consensus 277 ~~yda~~~~~~al~~~~---------------~~~~~~v~~~l~~~~~~g~~g~-i~f~~~g~~ 324 (334)
T cd06342 277 YAYDAANVLAEAIKKAG---------------STDPAKVADALRKVDFDGVTGK-ISFDAKGDL 324 (334)
T ss_pred HHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCCCccee-eEECCCCCc
Confidence 47889999999987741 1123468889999999988775 899999864
No 36
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=88.03 E-value=1.6 Score=29.21 Aligned_cols=58 Identities=17% Similarity=0.092 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+|+..++.|++..-. +.. ...+. . .-..-.|..+|+++.|.+..| .+.|+++|+.
T Consensus 279 ~~yda~~~~~~A~~~a~~--~~~-~~~~~-~-~~~~~~l~~~l~~~~~~g~~G-~v~f~~~g~~ 336 (344)
T cd06348 279 QAFDAVQVVAEALKRLNQ--KQK-LAELP-L-PELRTALNAALLSGQYDTPLG-EISFTPDGEV 336 (344)
T ss_pred HHHHHHHHHHHHHHHhcC--CCc-cccch-h-hhHHHHHHHHHhccCCcccee-eeEECCCCCc
Confidence 368999999999988732 110 01010 0 000225778899999998888 6999999874
No 37
>KOG1054|consensus
Probab=86.59 E-value=3.2 Score=30.71 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc----CCCCCCCCCCCCCCch----HHHHhhccceeecCCCCeEEEcCCCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELC----HGKKGLCEAMKPTKGS----DLLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~----~~~~~~~~~~~~~~~~----~L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
..|+||-.+|.|+..+.+..- .+..+.|.. .+..+| .+-+.||+|.+.+.+|. +.||+.|+
T Consensus 302 lthDailV~~eaf~~~~~q~~~~~rRG~~GD~~a-n~~~p~~qG~~I~ralk~v~~eGLTGn-iqFd~~G~ 370 (897)
T KOG1054|consen 302 LTHDAILVMAEAFRSLRRQRIDISRRGNAGDCLA-NPAVPWEQGIDIERALKQVQVEGLTGN-IQFDKYGR 370 (897)
T ss_pred hhhhHHHHHHHHHHHHHHhhhchhccCCCccccC-CCCCchhcchhHHHHHHheeecccccc-eeecccCc
Confidence 468999999999988764211 122455643 234466 47889999999887776 88999886
No 38
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=83.16 E-value=3.5 Score=27.62 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+++..++.|+... + ...+-.+...|+.+.|.+..|. +.||++|+.
T Consensus 289 ~~yda~~~l~~A~~~a---------g------~~~~~~i~~al~~~~~~g~~G~-i~f~~~g~~ 336 (344)
T cd06345 289 STYDSIYILAEAIERA---------G------STDGDALVEALEKTDFVGTAGR-IQFYGDDSA 336 (344)
T ss_pred HHHHHHHHHHHHHHHh---------c------CCCHHHHHHHHHhCCCcCCcee-EEECCCCCc
Confidence 3588888888888653 0 0113357788899999888764 999999985
No 39
>KOG1053|consensus
Probab=80.89 E-value=5.8 Score=30.90 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhc--CCCCCCCCCCC--CC-CchHHHHhhccceeecCCCCeEEEcCCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELC--HGKKGLCEAMK--PT-KGSDLLKYLRKVDFRGGPSQAAKMTAGW 110 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~--~~~~~~~~~~~--~~-~~~~L~~~L~~v~f~~~~~~~~~F~~~g 110 (114)
.|-++|-.+|+|-+.|+.... ......|.... .+ ..--|++||.|+.|.+ ..++|++.|
T Consensus 298 rVrdgvaiva~aa~s~~~~~~~lp~~~~~C~~~~~~~~~~~~~l~r~l~NvT~~g---~~lsf~~~g 361 (1258)
T KOG1053|consen 298 RVRDGVAIVARAASSMLRIHGFLPEPKMDCREQEETRLTSGETLHRFLANVTWDG---RDLSFNEDG 361 (1258)
T ss_pred HHhhhHHHHHHHHHHHHhhcccCCCcccccccccCccccchhhhhhhhheeeecc---cceeecCCc
Confidence 477899999999999874311 11234453221 22 2235899999999974 568999887
No 40
>KOG1055|consensus
Probab=72.62 E-value=7.2 Score=29.81 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC---CCCchHHHHhhccceeecCCCCeEEEcCCCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMK---PTKGSDLLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~---~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
..|+||+|+|+|++......-.. ...-.++. ....-++...+++.+|.+-+|. +-|.. |+
T Consensus 344 ~ayd~Iwa~ala~n~t~e~l~~~-~~~l~~f~y~~k~i~d~i~eamn~tsF~GvsG~-V~F~~-ge 406 (865)
T KOG1055|consen 344 LAYDAIWALALALNKTMEGLGRS-HVRLEDFNYNNKTIADQIYEAMNSTSFEGVSGH-VVFSN-GE 406 (865)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcc-ceeccccchhhhHHHHHHHHHhhcccccccccc-eEecc-hh
Confidence 37999999999999865321111 00000111 0012367888999999988877 55655 43
No 41
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=70.97 E-value=17 Score=23.95 Aligned_cols=50 Identities=22% Similarity=0.215 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+++..++.|+...= + ....+-.|...|+...|.+..| .+.|+++|+.
T Consensus 275 ~~yda~~~~~~a~~~ag--------~-----~~~~~~~v~~al~~~~~~~~~g-~i~f~~~~~~ 324 (333)
T cd06332 275 QGYDAAQLLDAALRAVG--------G-----DLSDKDALRAALRAADFDSPRG-PFKFNPNHNP 324 (333)
T ss_pred HHHHHHHHHHHHHHHhc--------C-----CCCCHHHHHHHHhcCceecCcc-ceeECCCCCc
Confidence 36788888888885530 0 0111235788889999988776 4899998874
No 42
>PF03549 Tir_receptor_M: Translocated intimin receptor (Tir) intimin-binding domain; InterPro: IPR003536 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior. There have been four secretion systems described in animal enteropathogens, such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis. However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself [], type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. Exotoxins secreted by the type III system do not possess a secretion signal, and are considered unique for this reason []. Enteropathogenic and entero- haemorrhagic Escherichia coli secrete the bacterial adhesion mediation molecule intimin [], which targets the translocated intimin receptor, Tir. Tir is secreted by the bacteria and is embedded in the target cell's plasma membrane []. This facilitates bacterial cell attachment to the host. ; GO: 0005515 protein binding; PDB: 2ZWK_F 2ZQK_D 1F02_T.
Probab=70.64 E-value=1.2 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=16.4
Q ss_pred ccceeecCCCCeEEEcCCCCc
Q psy15459 92 RKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 92 ~~v~f~~~~~~~~~F~~~g~~ 112 (114)
.+--|+.+.++.+..|++|++
T Consensus 17 t~eafqnp~nqkvnidengna 37 (66)
T PF03549_consen 17 TKEAFQNPDNQKVNIDENGNA 37 (66)
T ss_dssp HHHHCTSGGGEEEEEETTTEE
T ss_pred HHHHhcCcccceecccccCCc
Confidence 334677788888999999986
No 43
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=67.22 E-value=17 Score=24.27 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+++.+++.|+... + ...+-.|...|+.+.|.+..| .+.|+++|+.
T Consensus 289 ~~y~a~~~~~~a~~~a---------g------~~~~~~v~~al~~~~~~~~~G-~~~f~~~~~~ 336 (345)
T cd06338 289 GAYAAGQVLQEAVERA---------G------SLDPAAVRDALASNDFDTFYG-PIKFDETGQN 336 (345)
T ss_pred HHHHHHHHHHHHHHHh---------C------CCCHHHHHHHHHhCCCccccc-CeeECCCCCc
Confidence 3688888888888653 1 112335778889999988777 4899998874
No 44
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=60.91 E-value=34 Score=22.63 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|++++.++.|+-.-- .. ...+-.|...|+++.|.+..| .+.|+++|+.
T Consensus 278 ~~yda~~~~~~A~~~a~-------~~------~~~~~~v~~al~~~~~~~~~g-~~~f~~~~~~ 327 (336)
T cd06360 278 QGYDAGQALILALEAVG-------GD------LSDGQALIAAMAAAKIDSPRG-PFTLDKAHNP 327 (336)
T ss_pred HHHHHHHHHHHHHHHhC-------CC------CCCHHHHHHHHhcCCccCCCc-ceEECCCCCc
Confidence 46788888888875530 00 011235778888888887666 5999998864
No 45
>PF11396 DUF2874: Protein of unknown function (DUF2874); InterPro: IPR021533 This bacterial family of proteins are probable periplasmic proteins with unknown function. There are between one and four copies of this domain per sequence. ; PDB: 3DUE_A 3U1W_B 3DB7_A 4DSD_A 3ELG_A.
Probab=49.59 E-value=10 Score=18.51 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=12.2
Q ss_pred ceee-cCCCCeEEEcCCCCcC
Q psy15459 94 VDFR-GGPSQAAKMTAGWTSL 113 (114)
Q Consensus 94 v~f~-~~~~~~~~F~~~g~~~ 113 (114)
|.+. +..+.++.||++|+.+
T Consensus 41 v~l~~~~~~~~v~fd~~G~~l 61 (61)
T PF11396_consen 41 VELKKGGNEYEVYFDANGNWL 61 (61)
T ss_dssp EEETETTTSEEEEEETTS-EE
T ss_pred EEEEEeCCeEEEEEcCCCCCC
Confidence 4443 2345679999999753
No 46
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=46.06 E-value=79 Score=21.06 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
.-|+++.+++.|+... +. ....+-.+...|+...|.+..| .+.|+++|..
T Consensus 275 ~~yda~~~~~~A~~~a---------g~----~~~~~~~v~~al~~~~~~~~~G-~~~~~~~~~~ 324 (333)
T cd06359 275 QAYDAAQLLDSAVRKV---------GG----NLSDKDALRAALRAADFKSVRG-AFRFGTNHFP 324 (333)
T ss_pred HHHHHHHHHHHHHHHh---------cC----CCCCHHHHHHHHhcCccccCcc-ceEECCCCCc
Confidence 3578888888887543 00 0112346778888888887766 5899888764
No 47
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=43.29 E-value=82 Score=20.97 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+|+..++.|+... . ...+-.|...|+++.|.+..|. +.|++.+.-
T Consensus 278 ~~yda~~~~~~A~~~a------------g---~~~~~~l~~al~~~~~~~~~G~-i~f~~~~~~ 325 (333)
T cd06331 278 AAYEAVYLWAAAVEKA------------G---STDPEAVRAALEGVSFDAPQGP-VRIDPDNHH 325 (333)
T ss_pred HHHHHHHHHHHHHHHc------------C---CCCHHHHHHHhhcCcccCCCCc-eEecCCCCc
Confidence 4677888887777542 1 1123468888999998887774 899987653
No 48
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=42.10 E-value=63 Score=22.16 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|.++.+++.|+..- + ...+-.|...|++..|.+..|+ +.|++.|+.
T Consensus 302 ~~Y~~~~~l~~Al~~a---------G------~~~~~~l~~al~~~~~~~~~G~-~~~~~~g~~ 349 (369)
T PRK15404 302 TTYAAVQSLAAGINRA---------G------SDDPAKVAKYLKANTFDTVIGP-LSWDEKGDL 349 (369)
T ss_pred HHHHHHHHHHHHHHhh---------C------CCCHHHHHHHHHhCCCCcceEe-eEECCCCCc
Confidence 3577777777777432 1 1123467788888888877764 789988864
No 49
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=35.96 E-value=31 Score=12.65 Aligned_cols=12 Identities=0% Similarity=-0.355 Sum_probs=8.2
Q ss_pred CCeEEEcCCCCc
Q psy15459 101 SQAAKMTAGWTS 112 (114)
Q Consensus 101 ~~~~~F~~~g~~ 112 (114)
|....|.++|..
T Consensus 3 G~~~~yy~nG~l 14 (22)
T PF07661_consen 3 GEWKFYYENGKL 14 (22)
T ss_pred ceEEEEeCCCCE
Confidence 556677777764
No 50
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=35.25 E-value=1.1e+02 Score=21.45 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTA 108 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~ 108 (114)
..|.+|+.+|.|+..-= +..+-.|...|..+.|..+.|. +.+|.
T Consensus 280 aaY~~v~l~a~Av~~ag---------------s~d~~~vr~al~g~~~~aP~G~-v~id~ 323 (363)
T PF13433_consen 280 AAYFQVHLWAQAVEKAG---------------SDDPEAVREALAGQSFDAPQGR-VRIDP 323 (363)
T ss_dssp HHHHHHHHHHHHHHHHT---------------S--HHHHHHHHTT--EEETTEE-EEE-T
T ss_pred HHHHHHHHHHHHHHHhC---------------CCCHHHHHHHhcCCeecCCCcc-eEEcC
Confidence 47899999999997641 1134568888888888888776 67776
No 51
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=33.30 E-value=1.5e+02 Score=20.02 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCC
Q psy15459 50 VSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAG 109 (114)
Q Consensus 50 v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~ 109 (114)
.|.+++.++.|+... + ...+-.+...|+.+.|.+..| .+.|++.
T Consensus 280 ~Y~a~~~~~~Al~~a---------g------~~~~~~i~~aL~~~~~~~~~g-~~~f~~~ 323 (348)
T cd06355 280 AYIGVYLWKQAVEKA---------G------SFDVDKVRAALPGQSFDAPEG-PVTVDPA 323 (348)
T ss_pred HHHHHHHHHHHHHHh---------C------CCCHHHHHHHhccCcccCCCc-ceEeecC
Confidence 578888888888543 1 112335677777777766555 4778764
No 52
>KOG0437|consensus
Probab=31.80 E-value=49 Score=25.79 Aligned_cols=18 Identities=22% Similarity=0.098 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy15459 48 QFVSDAVMAFAHALNDMH 65 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~ 65 (114)
+.+|.|.|.+||-||.=+
T Consensus 594 STIYmAyYTvaHll~~d~ 611 (1080)
T KOG0437|consen 594 STIYMAYYTVAHLLHRDL 611 (1080)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 369999999999999844
No 53
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.87 E-value=1.3e+02 Score=20.02 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHH-HhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLL-KYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~-~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|++++.++.|+..- . . .. +-.+- ..++...|.+..| .+.||++|+.
T Consensus 276 ~~Yda~~~l~~A~~~a-----g---~-~~------~~~~~~~~~~~~~~~g~~g-~i~f~~~g~~ 324 (332)
T cd06344 276 TAYDATKALIAALSQG-----P---T-RE------GVQQVELSLRNFSVQGATG-KIKFLPSGDR 324 (332)
T ss_pred hHHHHHHHHHHHHHhC-----C---C-hh------hhhhhhhhcccccccCCCc-eeEeCCCCcc
Confidence 3678888888777432 0 0 00 11122 3455556766555 5899999974
No 54
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=27.83 E-value=43 Score=12.12 Aligned_cols=12 Identities=0% Similarity=-0.296 Sum_probs=8.6
Q ss_pred CCCeEEEcCCCC
Q psy15459 100 PSQAAKMTAGWT 111 (114)
Q Consensus 100 ~~~~~~F~~~g~ 111 (114)
.+.-.+|+++|.
T Consensus 7 ~~~wYy~~~~G~ 18 (19)
T PF01473_consen 7 NGNWYYFDSDGY 18 (19)
T ss_dssp TTEEEEETTTSB
T ss_pred CCEEEEeCCCcc
Confidence 355688888874
No 55
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=23.94 E-value=2.3e+02 Score=18.88 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCC
Q psy15459 50 VSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 50 v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
.|.++..++.|+..- + ...+-.|...|+++.|.+..| .+.|+.++.
T Consensus 279 ~yda~~~~~~A~~~a---------g------~~~~~~v~~al~~~~~~~~~G-~~~~~~~~~ 324 (333)
T cd06358 279 CYEAVHALAAAAERA---------G------SLDPEALIAALEDVSYDGPRG-TVTMRGRHA 324 (333)
T ss_pred HHHHHHHHHHHHHHh---------C------CCCHHHHHHHhccCeeeCCCc-ceEEccccc
Confidence 467777777766431 1 122456888899988887766 478988754
No 56
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=23.03 E-value=2.5e+02 Score=19.06 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGW 110 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g 110 (114)
..|+++.+++.|+... + ...+-.|...|+.+.|.+..| .+.|+..+
T Consensus 280 ~~yda~~~l~~Al~~a---------g------~~~~~~v~~aL~~~~~~~~~g-~~~f~~~~ 325 (360)
T cd06357 280 AAYFQVHLFARALQRA---------G------SDDPEDVLAALLGFSFDAPQG-PVRIDPDN 325 (360)
T ss_pred HHHHHHHHHHHHHHHc---------C------CCCHHHHHHHhccCcccCCCc-ceEEeCCC
Confidence 3578888888887642 1 011234667777777776544 47777644
No 57
>PRK15202 type III secretion chaperone protein SigE; Provisional
Probab=21.90 E-value=69 Score=18.22 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=11.4
Q ss_pred CCCCeEEEcCCCCcC
Q psy15459 99 GPSQAAKMTAGWTSL 113 (114)
Q Consensus 99 ~~~~~~~F~~~g~~~ 113 (114)
..+-+|+|+|.|+++
T Consensus 26 dddi~IYfnes~~~l 40 (117)
T PRK15202 26 DDDIQIYFNESDHTL 40 (117)
T ss_pred cCCeEEEEccCCcch
Confidence 445679999998875
No 58
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=20.65 E-value=2.9e+02 Score=18.79 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcC
Q psy15459 50 VSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTA 108 (114)
Q Consensus 50 v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~ 108 (114)
-|.|+..++.|+..- + ...+-.+...|+.+.|.+..| .+.|++
T Consensus 281 ~y~a~~~~~~A~~~a---------g------~~~~~~i~~al~~~~~~~~~G-~i~f~~ 323 (359)
T TIGR03407 281 AYLGVYLWKAAVEKA---------G------SFDVDAVRDAAIGIEFDAPEG-KVKVDG 323 (359)
T ss_pred HHHHHHHHHHHHHHh---------C------CCCHHHHHHHhcCCcccCCCc-cEEEeC
Confidence 477777777777542 1 112345667777777766666 578876
No 59
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=20.20 E-value=2.7e+02 Score=18.30 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhcc-ceeecCCCCeEEEcCCCCc
Q psy15459 50 VSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRK-VDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 50 v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~-v~f~~~~~~~~~F~~~g~~ 112 (114)
-|+++..++.|+... . .. .+-.+..-|++ ..|.+..|. +.|+.+|+.
T Consensus 279 ~yda~~~~~~Al~~a-----g-------~~---~~~~v~~~l~~~~~~~g~~G~-v~f~~~g~~ 326 (334)
T cd06347 279 GYDAYYLLADAIERA-----G-------ST---DPEAIRDALAKTKDFDGVTGK-ITIDENGNP 326 (334)
T ss_pred HHHHHHHHHHHHHHh-----C-------CC---CHHHHHHHHHhCCCcccceee-eEECCCCCc
Confidence 577888887777532 1 00 23345555554 457777774 899988763
Done!