Query psy15459
Match_columns 114
No_of_seqs 113 out of 1026
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 21:37:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ks9_A Mglur1, metabotropic gl 99.9 5.3E-23 1.8E-27 141.2 10.3 110 1-113 340-449 (496)
2 3mq4_A Mglur7, metabotropic gl 99.9 5E-23 1.7E-27 140.8 6.2 111 1-113 331-442 (481)
3 3sm9_A Mglur3, metabotropic gl 99.9 1.5E-22 5E-27 138.5 7.4 107 1-113 325-438 (479)
4 2e4u_A Metabotropic glutamate 99.6 1.7E-15 5.9E-20 105.2 9.6 107 1-113 326-439 (555)
5 4gpa_A Glutamate receptor 4; P 98.8 1.1E-08 3.8E-13 67.6 6.9 63 48-112 278-348 (389)
6 3qek_A NMDA glutamate receptor 98.4 3.8E-07 1.3E-11 60.5 4.9 63 47-112 278-346 (384)
7 3qel_B Glutamate [NMDA] recept 98.4 3.8E-07 1.3E-11 60.5 4.5 63 48-113 261-328 (364)
8 1jdp_A NPR-C, atrial natriuret 98.2 3.2E-06 1.1E-10 57.0 5.7 54 48-112 316-369 (441)
9 1dp4_A Atrial natriuretic pept 98.0 1.2E-05 4E-10 54.0 5.8 54 48-112 319-372 (435)
10 4f11_A Gamma-aminobutyric acid 97.8 1.9E-05 6.4E-10 53.1 4.1 61 48-112 315-381 (433)
11 3o21_A Glutamate receptor 3; p 97.6 0.00012 4.2E-09 48.7 6.0 64 48-112 280-350 (389)
12 3om0_A Glutamate receptor, ion 97.6 0.00018 6.2E-09 47.7 6.0 64 48-112 286-351 (393)
13 3kg2_A Glutamate receptor 2; I 97.4 0.00017 5.6E-09 52.2 4.7 64 48-112 274-344 (823)
14 3saj_A Glutamate receptor 1; r 97.4 0.0003 1E-08 46.6 5.2 63 49-112 278-347 (384)
15 3hsy_A Glutamate receptor 2; l 97.3 0.0006 2.1E-08 45.1 5.8 63 48-112 274-344 (376)
16 1usg_A Leucine-specific bindin 95.6 0.017 5.8E-07 37.3 4.5 49 48-112 278-326 (346)
17 3h6g_A Glutamate receptor, ion 95.0 0.026 8.8E-07 37.3 3.9 61 49-112 291-353 (395)
18 4evq_A Putative ABC transporte 94.2 0.069 2.4E-06 34.8 4.4 50 49-112 292-341 (375)
19 3i09_A Periplasmic branched-ch 93.9 0.13 4.5E-06 33.6 5.4 48 49-112 282-329 (375)
20 3n0w_A ABC branched chain amin 93.9 0.14 4.6E-06 33.6 5.4 49 49-112 285-333 (379)
21 4eyg_A Twin-arginine transloca 92.0 0.37 1.3E-05 31.2 5.3 49 49-112 284-333 (368)
22 3h5l_A Putative branched-chain 91.6 0.14 4.8E-06 34.1 3.0 54 49-111 307-360 (419)
23 3hut_A Putative branched-chain 91.5 0.42 1.4E-05 30.9 5.1 48 49-112 281-330 (358)
24 3ipc_A ABC transporter, substr 91.5 0.31 1.1E-05 31.5 4.5 49 48-112 277-325 (356)
25 3i45_A Twin-arginine transloca 90.3 0.49 1.7E-05 31.0 4.6 45 49-109 288-332 (387)
26 3td9_A Branched chain amino ac 90.2 0.42 1.4E-05 31.0 4.2 48 49-112 292-340 (366)
27 1pea_A Amidase operon; gene re 89.8 0.78 2.7E-05 30.1 5.4 47 48-110 287-333 (385)
28 3n0x_A Possible substrate bind 77.6 5.7 0.0002 25.8 5.2 47 49-111 287-334 (374)
29 4f06_A Extracellular ligand-bi 76.7 5.8 0.0002 25.8 5.1 48 49-111 287-334 (371)
30 3lop_A Substrate binding perip 73.2 12 0.00041 24.1 5.9 49 49-112 288-338 (364)
31 2zqk_M Putative translocated i 62.7 1.5 5E-05 21.7 -0.1 22 91-112 16-37 (77)
32 4gnr_A ABC transporter substra 60.7 10 0.00034 24.3 3.6 46 49-112 285-331 (353)
33 3tj5_B Metavinculin, SCA-famil 59.3 8.3 0.00028 15.3 2.7 17 50-66 6-22 (27)
34 3lkb_A Probable branched-chain 55.4 11 0.00037 24.6 3.1 51 49-111 289-350 (392)
35 3snr_A Extracellular ligand-bi 36.1 31 0.0011 21.9 2.9 52 49-109 286-338 (362)
36 1mby_A SAK, serine/threonine k 33.7 39 0.0013 17.7 2.5 22 92-113 42-63 (88)
37 4dsd_A Putative periplasmic pr 25.0 41 0.0014 18.8 1.8 18 93-112 45-62 (129)
38 3sg0_A Extracellular ligand-bi 24.7 36 0.0012 21.8 1.7 52 49-109 310-362 (386)
39 3db7_A Putative calcium-regula 24.0 44 0.0015 18.5 1.8 18 93-112 45-62 (127)
40 3elg_A Uncharacterized peripla 22.5 46 0.0016 18.4 1.7 18 93-112 46-63 (128)
41 3eaf_A ABC transporter, substr 20.7 52 0.0018 21.4 1.9 52 49-110 292-345 (391)
No 1
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.89 E-value=5.3e-23 Score=141.21 Aligned_cols=110 Identities=38% Similarity=0.713 Sum_probs=82.8
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAMK 80 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~ 80 (114)
|++++|+..|.|.++.... ......+.|+++++++...... ...+.||+||||+|||||+|+.+.|....+.|....
T Consensus 340 ~l~~~W~~~f~C~~~~~~~--~~~~~~~~C~~~~~l~~~~~~~-~~~~~vy~AVyavAhALh~m~~~~~~~~~~~c~~~~ 416 (496)
T 3ks9_A 340 WFPEFWQHRFQCRLPGHLL--ENPNFKRICTGNESLEENYVQD-SKMGFVINAIYAMAHGLQNMHHALCPGHVGLCDAMK 416 (496)
T ss_dssp THHHHHHHHTTCBCCC-------CCCSSBCCSCCCTTTTCCCC-TTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCGGGS
T ss_pred HHHHHHHHHcCCCCCCCcc--ccccccCCCCCccccccccccc-chHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCCC
Confidence 5789999999998643210 0011235799999987643211 134579999999999999999766654445676555
Q ss_pred CCCchHHHHhhccceeecCCCCeEEEcCCCCcC
Q psy15459 81 PTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTSL 113 (114)
Q Consensus 81 ~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~~ 113 (114)
.+.+|||++|||+|+|++..|++++||++|+.+
T Consensus 417 ~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~ 449 (496)
T 3ks9_A 417 PIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAP 449 (496)
T ss_dssp SCCHHHHHHHHHTCEEECTTSCEEECCTTSCCC
T ss_pred CCCHHHHHHHHHhcCCcCCCCCEEEECCCCCcc
Confidence 678999999999999999999999999999975
No 2
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.88 E-value=5e-23 Score=140.80 Aligned_cols=111 Identities=34% Similarity=0.707 Sum_probs=77.8
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCccc-hhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFE-NQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAM 79 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~-~~~~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~ 79 (114)
|++++|+..|.|.+..... ......+.|++++++........ ...+.||+|||++|||||+|+...|....+.|...
T Consensus 331 ~~~~~w~~~f~C~~~~~~~--~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~ 408 (481)
T 3mq4_A 331 WFAEYWEENFNCKLTISGS--KKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEM 408 (481)
T ss_dssp THHHHHHHHHTCCC--------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----CCHHH
T ss_pred HHHHHHHHhcCCCCCCccc--cccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence 5789999999998643100 00112357999999875432111 23567999999999999999876665434456544
Q ss_pred CCCCchHHHHhhccceeecCCCCeEEEcCCCCcC
Q psy15459 80 KPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTSL 113 (114)
Q Consensus 80 ~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~~ 113 (114)
..+.+|||++|||+|+|++..|++++||++|+.+
T Consensus 409 ~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~ 442 (481)
T 3mq4_A 409 EQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAP 442 (481)
T ss_dssp HTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCC
T ss_pred CCcCHHHHHHHHhcceeecCCCCEEEECCCCCCc
Confidence 4567899999999999999999999999999975
No 3
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.87 E-value=1.5e-22 Score=138.53 Aligned_cols=107 Identities=32% Similarity=0.604 Sum_probs=81.0
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAMK 80 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~ 80 (114)
|++++|+..|.|.+.... ...+.|+++++++..........+.||+|||++|||||+|+.+.|....+.|....
T Consensus 325 ~~~~~w~~~f~C~~~~~~------~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~ 398 (479)
T 3sm9_A 325 WFRDFWEQKFQCSLQNKR------NHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMK 398 (479)
T ss_dssp THHHHHHHHHTCBCCC---------CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCHHHH
T ss_pred HHHHHHHHHcCCCCCCCc------ccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCC
Confidence 578999999999874321 12357999999876433212245789999999999999999766754345565434
Q ss_pred CCCchHHH-HhhccceeecC------CCCeEEEcCCCCcC
Q psy15459 81 PTKGSDLL-KYLRKVDFRGG------PSQAAKMTAGWTSL 113 (114)
Q Consensus 81 ~~~~~~L~-~~L~~v~f~~~------~~~~~~F~~~g~~~ 113 (114)
.+.+|||+ +|||+|+|++. .|++++||++|+.+
T Consensus 399 ~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~ 438 (479)
T 3sm9_A 399 ILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM 438 (479)
T ss_dssp SCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCC
T ss_pred CcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcc
Confidence 56799999 99999999988 89999999999975
No 4
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.63 E-value=1.7e-15 Score=105.16 Aligned_cols=107 Identities=33% Similarity=0.614 Sum_probs=75.1
Q ss_pred ChHHhhccCCCCcCCCCCCCCCCCcCcccCCCccccCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q psy15459 1 MCSEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAMK 80 (114)
Q Consensus 1 ~l~~~w~~~f~C~~~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~ 80 (114)
++.++|+..|.|.+.... .....|++++++...........+.+|+|||++|+|||++..+.+......|....
T Consensus 326 ~~~~~w~~~f~c~~~~~~------~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~ 399 (555)
T 2e4u_A 326 WFRDFWEQKFQCSLQNKR------NHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMK 399 (555)
T ss_dssp THHHHHHHHTTCCCC------------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGT
T ss_pred HHHHHHHHHcCCCCCCCC------ccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCccccccC
Confidence 367889988999653210 01236999999865421111235689999999999999997644432233444333
Q ss_pred CCCchHHHH-hhccceee------cCCCCeEEEcCCCCcC
Q psy15459 81 PTKGSDLLK-YLRKVDFR------GGPSQAAKMTAGWTSL 113 (114)
Q Consensus 81 ~~~~~~L~~-~L~~v~f~------~~~~~~~~F~~~g~~~ 113 (114)
...+|+|++ +|++++|. +..|+++.||++|+..
T Consensus 400 ~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~ 439 (555)
T 2e4u_A 400 ILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM 439 (555)
T ss_dssp SCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC
T ss_pred CCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc
Confidence 457899999 99999999 8899999999999864
No 5
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=98.82 E-value=1.1e-08 Score=67.55 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCC----CCCCCCCCCCCCch----HHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHG----KKGLCEAMKPTKGS----DLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~----~~~~~~~~~~~~~~----~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+||+++|+|||++....... ....|. .....+| +|+++|++++|.+.+|+ +.||++|+.
T Consensus 278 a~~YDAV~~~A~Al~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~~l~~~l~~v~f~G~tG~-v~Fd~~G~r 348 (389)
T 4gpa_A 278 ALTYDGVLVMAETFRSLRRQKIDISRRGNAGDCL-ANPAAPWGQGIDMERTLKQVRIQGLTGN-VQFDHYGRR 348 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCCTT-CSSCCCCTTHHHHHHHHHTCEEEETTEE-EEBCTTSCB
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCccccc-cCCCcccchHHHHHHHHHhCceecCcee-EEECCCCCC
Confidence 468999999999999998643211 011222 1233344 59999999999999984 999999985
No 6
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=98.39 E-value=3.8e-07 Score=60.50 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcC-CCCCCCCCCCCCCchHHHHh----hcccee-ecCCCCeEEEcCCCCc
Q psy15459 47 LQFVSDAVMAFAHALNDMHKELCH-GKKGLCEAMKPTKGSDLLKY----LRKVDF-RGGPSQAAKMTAGWTS 112 (114)
Q Consensus 47 ~~~v~~aV~ala~aLh~~~~~~~~-~~~~~~~~~~~~~~~~L~~~----L~~v~f-~~~~~~~~~F~~~g~~ 112 (114)
...+|+|||++|+|||++..+... .....|.. ...+|++..+ ++++.| .+..| .+.||++|+.
T Consensus 278 ~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~--~~~~~~~~~~l~~~~~~~~f~~G~~G-~v~fd~~G~~ 346 (384)
T 3qek_A 278 SAHISDAVAVVAQAIHELFEMENITDPPRGCVG--NTNIWKTGPLFKRVLMSSKYPDGVTG-RIEFNEDGDR 346 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTT--CCCCCTTHHHHHHHHHTCCEEEETTE-EECBCTTSCB
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCcccc--CCCccccHHHHHHHHhcCCccCCCCc-ceEECCCCCC
Confidence 357999999999999999753221 12334542 2346765544 455566 55566 7999999985
No 7
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=98.37 E-value=3.8e-07 Score=60.50 Aligned_cols=63 Identities=22% Similarity=0.310 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hcCCCCCCCCCCCC---CCchHHHHhhccceeecCCCCeEEEcCCCCcC
Q psy15459 48 QFVSDAVMAFAHALNDMHKE--LCHGKKGLCEAMKP---TKGSDLLKYLRKVDFRGGPSQAAKMTAGWTSL 113 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~--~~~~~~~~~~~~~~---~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~~ 113 (114)
..+|+||+++|+|+|+|... .+......|..... ..+.+|++||++++|.+ ..+.||++|+..
T Consensus 261 ~~~yDaV~~~A~A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~G---l~i~F~~~G~~~ 328 (364)
T 3qel_B 261 ARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEG---RDLSFSEDGYQM 328 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETT---EECCBCTTSSBS
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeC---ceEEECCCCCcc
Confidence 46999999999999998753 13222455754321 13457999999999964 378999999753
No 8
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=98.18 E-value=3.2e-06 Score=57.00 Aligned_cols=54 Identities=15% Similarity=0.270 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+|||++|+|||++.. +. .+ ...+++|+++|++++|.+..| .+.||++|+.
T Consensus 316 ~~~YdAv~~~A~Al~~~~~--~~----~~----~~~~~~l~~~l~~~~f~g~~G-~v~fd~~Gd~ 369 (441)
T 1jdp_A 316 EGFHDAILLYVLALHEVLR--AG----YS----KKDGGKIIQQTWNRTFEGIAG-QVSIDANGDR 369 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TT----CC----TTCHHHHHHHHSSEEEEETTE-EEEECTTSBB
T ss_pred HHHHHHHHHHHHHHHHHHH--hC----CC----CCCHHHHHHHHhCCeeECCcc-ceEECCCCCc
Confidence 4689999999999999864 21 01 134789999999999997655 5999999975
No 9
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=98.01 E-value=1.2e-05 Score=54.02 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+||+++|+|||++.. +. + ....+++|..+|+++.|.+..|+ +.||++|+.
T Consensus 319 ~~~ydav~~~a~Al~~~~~--~~---~-----~~~~~~~l~~~l~~~~f~g~~G~-v~fd~~g~~ 372 (435)
T 1dp4_A 319 ASFHDGLLLYVQAVTETLA--QG---G-----TVTDGENITQRMWNRSFQGVTGY-LKIDRNGDR 372 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TT---C-----CTTCHHHHHHTTTTEEEEETTEE-EEECTTSBB
T ss_pred HHHHHHHHHHHHHHHHHHH--cC---C-----CCCCHHHHHHHHhCceeecccee-EEECCCCCc
Confidence 4689999999999999864 21 1 12347889999999999988887 999999975
No 10
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=97.81 E-value=1.9e-05 Score=53.10 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC--CC----CchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMK--PT----KGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~--~~----~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+||+++|+||+++..+.+.. +.|.... .. .+++|..+|+++.|.+..|+ +.| ++|+.
T Consensus 315 ~~~YDAv~~la~Al~~a~~~~~~~--~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~-v~f-~~Gd~ 381 (433)
T 4f11_A 315 GYAYDGIWVIAKTLQRAMETLHAS--SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQ-VVF-RNGER 381 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS--SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEE-EEE-ETTEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcc--CCCCcccccccccHHHHHHHHHHHHhcEEEccceE-EEE-ecCce
Confidence 358999999999999987543221 1121111 11 25789999999999998887 899 88874
No 11
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=97.64 E-value=0.00012 Score=48.72 Aligned_cols=64 Identities=22% Similarity=0.378 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhh---cC-CCCCCCCCC--CC-CCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKEL---CH-GKKGLCEAM--KP-TKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~---~~-~~~~~~~~~--~~-~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+||+++|+|++++.... +. .....|... .+ -.+-+|..+|+++.|.+.+| .+.||++|+.
T Consensus 280 ~~~YDAv~~~a~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~Fd~~G~~ 350 (389)
T 3o21_A 280 ALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTG-NIQFDTYGRR 350 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTE-EECBCTTSBB
T ss_pred HHHHHHHHHHHHHHHHHHhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccce-eeeeCCCCCc
Confidence 468999999999999986411 00 011234211 11 12336999999999999988 4899999984
No 12
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=97.57 E-value=0.00018 Score=47.73 Aligned_cols=64 Identities=20% Similarity=0.359 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hcCCCCCCCCCCCC-CCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKE-LCHGKKGLCEAMKP-TKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~-~~~~~~~~~~~~~~-~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+||+++|+|++++... .+......|....+ ..+.+|..+|+++.|.+..|+ +.||++|+.
T Consensus 286 ~~~YDAv~~la~Al~~~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~-i~fd~~G~~ 351 (393)
T 3om0_A 286 ALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGR-VEFNSKGQR 351 (393)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEE-ECBCTTSCB
T ss_pred HHHHhHHHHHHHHHHHHhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccce-EEeCCCCcc
Confidence 46899999999999998431 11112334543222 234579999999999998885 899999985
No 13
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=97.43 E-value=0.00017 Score=52.21 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC----CCCCCCCCCC--C-CCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCH----GKKGLCEAMK--P-TKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~----~~~~~~~~~~--~-~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..+|+||+++|+|+|++...... ..+..|.... + ..+.+|..+|+++.|.+.+|+ +.||++|+.
T Consensus 274 ~~~YDAv~~la~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~-i~fd~~G~~ 344 (823)
T 3kg2_A 274 ALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGN-IKFDQNGKR 344 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEE-CCBCSSSCB
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccC-eEECCCCcc
Confidence 46899999999999998642110 0123343221 1 234579999999999998887 899999974
No 14
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=97.38 E-value=0.0003 Score=46.60 Aligned_cols=63 Identities=24% Similarity=0.450 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhh---hcC-CCCCCCCCCC--C-CCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKE---LCH-GKKGLCEAMK--P-TKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~---~~~-~~~~~~~~~~--~-~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+||+++|+|++++... .|. ...+.|.... + ..+..|..+|+++.|.+.+|+ +.||++|+.
T Consensus 278 ~~YDav~~~a~Al~~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~-i~fd~~G~~ 347 (384)
T 3saj_A 278 LTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGN-VQFNEKGRR 347 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEE-ECBCTTSBB
T ss_pred HHHHHHHHHHHHHHHHHhhccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCccccee-eEeCCCCCc
Confidence 5899999999999998641 121 1234564321 1 245689999999999988887 999999984
No 15
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=97.28 E-value=0.0006 Score=45.08 Aligned_cols=63 Identities=22% Similarity=0.353 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcC----CCCCCCCCCCCCCch----HHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCH----GKKGLCEAMKPTKGS----DLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~----~~~~~~~~~~~~~~~----~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
...|+||+++|.|++++...... .....|.. .+..+| +|..+|+++.|.+.+| .+.||++|+.
T Consensus 274 a~~YDav~~la~Ai~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~l~~~~f~G~tG-~i~fd~~G~~ 344 (376)
T 3hsy_A 274 ALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLA-NPAVPWGQGVEIERALKQVQVEGLSG-NIKFDQNGKR 344 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSCCCCCCCTTC-SSCCCCHHHHHHHHHHHHCCEEETTE-EECBCTTSBB
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCCccCC-CCCCCcCCcHHHHHHHHhcCcCCCcc-ceeECCCCCC
Confidence 46899999999999998642100 01123410 122233 7999999999999988 6999999984
No 16
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=95.64 E-value=0.017 Score=37.28 Aligned_cols=49 Identities=16% Similarity=0.017 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
...|+|+++++.||+..- ...+..|...|+++.|.+..| .+.|+++|+.
T Consensus 278 ~~~yda~~~~~~al~~~g---------------~~~~~~l~~~l~~~~~~g~~G-~i~f~~~g~~ 326 (346)
T 1usg_A 278 WITYAAVQSLATALERTG---------------SDEPLALVKDLKANGANTVIG-PLNWDEKGDL 326 (346)
T ss_dssp HHHHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHCEEETTE-EECBCTTSSB
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCcccee-eeEECCCCCc
Confidence 357999999999998861 113567888999999998888 6999999874
No 17
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=95.02 E-value=0.026 Score=37.35 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCC-CchHHHHhhccceeecCCCCeEEEcC-CCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPT-KGSDLLKYLRKVDFRGGPSQAAKMTA-GWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~-~~~~L~~~L~~v~f~~~~~~~~~F~~-~g~~ 112 (114)
..|+||++++.|+...-.. ......|...... .+-.|...|+++.|.+..|+ +.||+ +|+.
T Consensus 291 ~~YDav~~~a~Al~~a~~~--~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~-i~fd~~~G~~ 353 (395)
T 3h6g_A 291 LMYDAVHVVSVAVQQFPQM--TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGR-ITFNKTNGLR 353 (395)
T ss_dssp HHHHHHHHHHHHHHTCTTC--CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEE-EECCTTTSEE
T ss_pred HHHhHHHHHHHHHHhhhcC--CCcCCCCCCCCcCcccHHHHHHHhcCCCcCccee-eEecCCCCee
Confidence 5899999999999875310 1112235322221 34478999999999988875 89998 8864
No 18
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=94.19 E-value=0.069 Score=34.81 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+|++.++.|++..- . ....+..|...|+++.|.+..|+ +.|+++|+.
T Consensus 292 ~~yda~~~~~~al~~~g--------~-----~~~~~~~l~~~l~~~~~~g~~G~-i~f~~~g~~ 341 (375)
T 4evq_A 292 QGWDAGQLLDAGVKAVG--------G-----DVAKRKELNAAMAAASFASPRGP-FKLSAAHNP 341 (375)
T ss_dssp HHHHHHHHHHHHHHHTT--------T-----CTTCHHHHHHHHHTCEEEETTEE-EEBCTTSCB
T ss_pred HHHHHHHHHHHHHHHhC--------C-----CCCCHHHHHHHHhcCCcccCCcc-eeECCCCCc
Confidence 47999999999997641 0 01245689999999999988876 999998875
No 19
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=93.94 E-value=0.13 Score=33.59 Aligned_cols=48 Identities=10% Similarity=0.119 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+|++.++.|++..- ...+-.|...|+++.|.+..|. +.|+++|+.
T Consensus 282 ~~Yda~~~~~~Al~~ag---------------~~~~~~l~~aL~~~~~~~~~G~-~~f~~~g~~ 329 (375)
T 3i09_A 282 ADYSSVTTYLKAVQAAG---------------STDSDKVMAQLKKMKIDDFYAK-GYIRTDGSM 329 (375)
T ss_dssp HHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTSCEESSSCE-EEECTTSBE
T ss_pred HHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhCCCccCCCCc-eEECCCCCe
Confidence 57999999999998751 1124578899999999988887 899998864
No 20
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=93.93 E-value=0.14 Score=33.62 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
..|+|++.++.|++..- ...+-.|...|+++.|.+..|..+.|+++|+.
T Consensus 285 ~~Yda~~~~~~Al~~ag---------------~~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~ 333 (379)
T 3n0w_A 285 GGYSAALQYLKAVNAIG---------------SKDPQKVFAYLKTIKFDDAVTRHGTLRPGGRL 333 (379)
T ss_dssp HHHHHHHHHHHHHHHHT---------------CCCHHHHHHHHTTCCBCSSSCCSBEECTTSBE
T ss_pred HHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhcCCccccCCCceeECCCCCc
Confidence 57999999999998751 11355788999999998887777899998864
No 21
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=92.03 E-value=0.37 Score=31.24 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEc-CCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMT-AGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~-~~g~~ 112 (114)
..|+|++.++.||+..- + ...+..|...|+++.|.+..| .+.|| ++|+.
T Consensus 284 ~~yda~~~~~~al~~~g--------~------~~~~~~l~~al~~~~~~g~~G-~i~f~~~~~~~ 333 (368)
T 4eyg_A 284 GGYDGIHLVFEALKKTG--------G------KADGDSLIAAMKGMKWESPRG-PISIDPETRDI 333 (368)
T ss_dssp HHHHHHHHHHHHHHHTT--------T------CCSHHHHHHHHTTCEEEETTE-EEEECTTTCCE
T ss_pred HHHHHHHHHHHHHHHhC--------C------CCCHHHHHHHHHcCCcccCCC-CeEECcccCCc
Confidence 57899999999998751 0 123567899999999998877 48999 77763
No 22
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=91.56 E-value=0.14 Score=34.07 Aligned_cols=54 Identities=19% Similarity=0.152 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
..|+|+++++.|+..... ..... ....+..|...|+++.|.+..|. +.||++|+
T Consensus 307 ~~Yda~~~~~~a~~~a~~------~~~~g--~~~~~~~l~~al~~~~~~g~~G~-i~f~~~g~ 360 (419)
T 3h5l_A 307 QTYSALYAYSIAAALAGG------PGAPY--DDVQNKAVADRLRSLIFRGPVGT-MRFHADTQ 360 (419)
T ss_dssp HHHHHHHHHHHHHHHTTS------CCCTT--CHHHHHHHHHHHHHCEEEETTEE-EEBCTTTC
T ss_pred HHHHHHHHHHHHHHHhcC------CccCC--CccCHHHHHHHHHhCCcccCceE-EEECCCCC
Confidence 478999999999976421 01001 11234578899999999988885 99999987
No 23
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=91.46 E-value=0.42 Score=30.87 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchH-HHHhhccc-eeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSD-LLKYLRKV-DFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~-L~~~L~~v-~f~~~~~~~~~F~~~g~~ 112 (114)
..|+|++.++.|+...- ...+.. |...|+++ .|.+..| .+.|+++|+.
T Consensus 281 ~~yda~~~~~~al~~ag---------------~~~~~~~~~~~l~~~~~~~g~~G-~~~f~~~g~~ 330 (358)
T 3hut_A 281 HGYDAVGIMLAAVGRAG---------------PEVTRESLRDALAATDRYAGVTG-ITRFDPETRE 330 (358)
T ss_dssp HHHHHHHHHHHHHHHHC---------------TTCCHHHHHHHHHTCCSEEETTE-EEEECTTTCC
T ss_pred HHHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHhcCCCcCCce-eeEECCCCCc
Confidence 47899999999998751 112456 88999999 8998877 5999999875
No 24
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=91.45 E-value=0.31 Score=31.49 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCCc
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
...|+|++.++.|+...- ...+-.|...|++..|.+..|+ +.||++|+.
T Consensus 277 ~~~yda~~~~~~al~~ag---------------~~~~~~~~~~l~~~~~~g~~G~-~~f~~~g~~ 325 (356)
T 3ipc_A 277 LYSYAAMQAIAGAAKAAG---------------SVEPEKVAEALKKGSFPTALGE-ISFDEKGDP 325 (356)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------CCCHHHHHHHHTTCCBCCTTSS-BCBCTTSCB
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCCCccee-eEECCCCCc
Confidence 357999999999997751 1224578889999999988885 899998875
No 25
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=90.28 E-value=0.49 Score=31.04 Aligned_cols=45 Identities=18% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAG 109 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~ 109 (114)
..|+|++.++.|++..- ...+..|...|+++.|.+..|+ +.|++.
T Consensus 288 ~~Yda~~~~a~Al~~ag---------------~~~~~~v~~al~~~~~~g~~G~-i~f~~~ 332 (387)
T 3i45_A 288 VGYNTLTAMAVAFEKAG---------------GTESETLVETLKDMAFSTPMGP-LSFRAS 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHT---------------SCCHHHHHHHTTTCEEEETTEE-EEBCTT
T ss_pred HHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhcCCCcCCCCC-eEEcCC
Confidence 47999999999998751 1235679999999999988776 899863
No 26
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=90.15 E-value=0.42 Score=31.03 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccce-eecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVD-FRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~-f~~~~~~~~~F~~~g~~ 112 (114)
..|+|++.++.|+...- ...+..|...|+++. |.+..|. +.|+++|+.
T Consensus 292 ~~yda~~~~~~al~~ag---------------~~~~~~~~~~l~~~~~~~g~~G~-i~f~~~g~~ 340 (366)
T 3td9_A 292 LGYDAYMVLLDAIERAG---------------SFDREKIAEEIRKTRNFNGASGI-INIDENGDA 340 (366)
T ss_dssp HHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTCCSEEETTEE-ECBCTTSCB
T ss_pred HHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHhCCCCccccee-eEECCCCCc
Confidence 47899999999997751 123557889999997 9988775 899988874
No 27
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=89.85 E-value=0.78 Score=30.06 Aligned_cols=47 Identities=9% Similarity=0.050 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCC
Q psy15459 48 QFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGW 110 (114)
Q Consensus 48 ~~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g 110 (114)
...|+|++.++.|++..- ...+..|...|+++.|.+..| .+.|+++|
T Consensus 287 ~~~yda~~~~~~Al~~ag---------------~~~~~~l~~al~~~~~~g~~G-~i~f~~~~ 333 (385)
T 1pea_A 287 EAAYWQTLLLGRAAQAAG---------------NWRVEDVQRHLYDIDIDAPQG-PVRVERQN 333 (385)
T ss_dssp HHHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTCCEEETTE-EEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhhCcccCCCC-CeEEcCCC
Confidence 357999999999998751 112457888999999988777 48999854
No 28
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=77.56 E-value=5.7 Score=25.82 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcC-CCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTA-GWT 111 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~-~g~ 111 (114)
..|+|++.++.|+...- ...+-.|...|+++.|.+..|. +.|++ +|+
T Consensus 287 ~~Yda~~~l~~Al~~ag---------------~~~~~~v~~aL~~~~~~g~~G~-i~f~~~~~~ 334 (374)
T 3n0x_A 287 GGFSAAMAVVTAVQKAK---------------STDTEKLIAAMEGMEFDTPKGK-MVFRKEDHQ 334 (374)
T ss_dssp HHHHHHHHHHHHHHHHT---------------SCCHHHHHHHHTTCEEEETTEE-EEECTTTCB
T ss_pred HHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHhcCCccCCCCC-EEECcccCc
Confidence 46899999999987641 1234578899999999988774 89985 443
No 29
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=76.70 E-value=5.8 Score=25.84 Aligned_cols=48 Identities=4% Similarity=0.071 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceeecCCCCeEEEcCCCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGGPSQAAKMTAGWT 111 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~~~~~~~~~F~~~g~ 111 (114)
..|+|++.++.|+... . + +..+-.+...|+++.|.+..| .+.||++|.
T Consensus 287 ~~Yda~~~l~~Ai~~~-----a---g------~~d~~~v~~al~~~~~~~~~G-~i~fd~~~~ 334 (371)
T 4f06_A 287 AAYDGARLIYKMIEAT-----S---G------KSDPDKAIAAVKGMKWVSPRG-EVSIDPETR 334 (371)
T ss_dssp HHHHHHHHHHHHHHHT-----T---T------SCCHHHHHHHHTTCEEEETTE-EEEECTTTC
T ss_pred HHHHHHHHHHHHHHHh-----c---C------CCCHHHHHHHHhCCCeeCCcE-EEEEcCCCC
Confidence 3688999998888542 0 1 123456888999999998877 489997664
No 30
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=73.22 E-value=12 Score=24.09 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccc-eeec-CCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKV-DFRG-GPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v-~f~~-~~~~~~~F~~~g~~ 112 (114)
..|+|++.++.|+...- . ...+-.|...|+++ .|.+ ..| .+.|++++..
T Consensus 288 ~~yda~~~~~~al~~ag--------~------~~~~~~v~~aL~~~~~~~~~~~g-~i~f~~~~~~ 338 (364)
T 3lop_A 288 EGFVAAKVLAEAIRRAG--------P------KPTREQVRHALTELRDYDVGGGF-TVDFTDRSRP 338 (364)
T ss_dssp HHHHHHHHHHHHHHHHC--------S------SCCHHHHHHHHHTCEEEESSTTC-EEECSSTTSC
T ss_pred HHHHHHHHHHHHHHHhC--------C------CCCHHHHHHHHHhcCCccCCCCe-eeecCCCCcC
Confidence 57899999999997750 0 12245688899999 6987 554 6899987653
No 31
>2zqk_M Putative translocated intimin receptor protein (translocated intimin receptor TIR)...; protein-protein complex; 2.80A {Escherichia coli} PDB: 2zwk_B 1f02_T
Probab=62.73 E-value=1.5 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=16.9
Q ss_pred hccceeecCCCCeEEEcCCCCc
Q psy15459 91 LRKVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 91 L~~v~f~~~~~~~~~F~~~g~~ 112 (114)
|.+--|+.+.++.+..|++|++
T Consensus 16 lt~eafqnpdnqkvnide~gna 37 (77)
T 2zqk_M 16 LTKEAFQNPDNQKVNIDELGNA 37 (77)
T ss_dssp HHHHHHTSGGGEEEEECTTSCE
T ss_pred HHHHHhcCcccceecccccCCc
Confidence 3344677788888999999986
No 32
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=60.69 E-value=10 Score=24.32 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccc-eeecCCCCeEEEcCCCCc
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKV-DFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v-~f~~~~~~~~~F~~~g~~ 112 (114)
..|+|++.++.|+..- . .+-.+...|+.+ .|.+..|+ +.||++|+.
T Consensus 285 ~~Yda~~~la~Ai~~a---------~--------~~~~v~~aL~~~~~~~g~~G~-i~f~~~g~~ 331 (353)
T 4gnr_A 285 LAYDSVHLVANAAKGA---------K--------NSGEIKDNLAXTKDFEGVTGQ-TSFDADHNT 331 (353)
T ss_dssp HHHHHHHHHHHHHTTC---------S--------SHHHHHHHHHTCCCEEETTEE-ECCCTTSCC
T ss_pred HHHHHHHHHHHHHhcC---------C--------CHHHHHHHHHhcCCCccCcee-EEECCCcCC
Confidence 4688999998887311 0 133566777766 58877764 789988874
No 33
>3tj5_B Metavinculin, SCA-family protein; cytoskeleton, epidemic typhus, spotted fever, alpha-HE bundle domain, protein-protein interactions; 1.99A {Rickettsia rickettsii}
Probab=59.25 E-value=8.3 Score=15.26 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy15459 50 VSDAVMAFAHALNDMHK 66 (114)
Q Consensus 50 v~~aV~ala~aLh~~~~ 66 (114)
+.+|..++..++++++.
T Consensus 6 vlnAA~~LS~sMQdLLn 22 (27)
T 3tj5_B 6 LLNAATALSGSMQYLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888999999998863
No 34
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=55.41 E-value=11 Score=24.60 Aligned_cols=51 Identities=10% Similarity=0.007 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccce----ee-------cCCCCeEEEcCCCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVD----FR-------GGPSQAAKMTAGWT 111 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~----f~-------~~~~~~~~F~~~g~ 111 (114)
..|+|++.++.|+...-.. + ....+-.|...|+++. |. +..| .+.|+++|.
T Consensus 289 ~~yda~~~~~~al~~ag~~------~-----~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G-~i~f~~~~~ 350 (392)
T 3lkb_A 289 NGMLAAAIAVEAIRRAQER------F-----KRITNETVYQAIVGMNGPNAFKPGFAVSTKQGV-EIDFTKSEH 350 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHH------H-----SSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSC-SBCCCSSCC
T ss_pred HHHHHHHHHHHHHHHhhcc------C-----CCCCHHHHHHHHHhcCCCcCcccccccccccce-eeEeCCCCc
Confidence 4689999999999875310 0 0123456888888886 76 4455 478988765
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=36.08 E-value=31 Score=21.88 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccc-eeecCCCCeEEEcCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKV-DFRGGPSQAAKMTAG 109 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v-~f~~~~~~~~~F~~~ 109 (114)
..|+|++.++.|+........ .+ ....+-.|...|+++ .|.+..|. +.|+++
T Consensus 286 ~~yda~~~~~~al~~a~~~~~---~g-----~~~~~~~~~~al~~~~~~~g~~G~-~~f~~~ 338 (362)
T 3snr_A 286 HSYDAFKVLERVVPVALKKAK---PG-----TQEFREALREAFLTEKDIAASQGV-YNFTET 338 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---TT-----SHHHHHHHHHHHHHCCCEECSSCE-ECCCSS
T ss_pred hHHHHHHHHHHHHHHhhcccc---CC-----CcchHHHHHHHHHhcCCcccceee-EEeCCC
Confidence 479999999999988642100 01 011123578888888 89877664 889875
No 36
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=33.68 E-value=39 Score=17.69 Aligned_cols=22 Identities=5% Similarity=0.063 Sum_probs=17.6
Q ss_pred ccceeecCCCCeEEEcCCCCcC
Q psy15459 92 RKVDFRGGPSQAAKMTAGWTSL 113 (114)
Q Consensus 92 ~~v~f~~~~~~~~~F~~~g~~~ 113 (114)
--+.|+...|....|+++.+.|
T Consensus 42 ~~ItYt~~~G~~t~y~~~d~LP 63 (88)
T 1mby_A 42 SSISYTSPDGQTTRYGENEKLP 63 (88)
T ss_dssp EEEEEECTTSCEEEEETTSCCC
T ss_pred ceeEEeCCCCceEEcCcCCCcc
Confidence 4678888888889998887754
No 37
>4dsd_A Putative periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.75A {Bacteroides ovatus}
Probab=25.00 E-value=41 Score=18.75 Aligned_cols=18 Identities=6% Similarity=-0.068 Sum_probs=13.2
Q ss_pred cceeecCCCCeEEEcCCCCc
Q psy15459 93 KVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 93 ~v~f~~~~~~~~~F~~~g~~ 112 (114)
.|.|. .|.++.||.+|+-
T Consensus 45 eV~l~--~G~ei~Fd~~G~W 62 (129)
T 4dsd_A 45 EVVLM--DGTEIDFDSKGNW 62 (129)
T ss_dssp EEEET--TSCEEEECTTSCE
T ss_pred EEEEC--CCcEEEEeCCCCE
Confidence 45554 4789999999973
No 38
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=24.72 E-value=36 Score=21.84 Aligned_cols=52 Identities=17% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccc-eeecCCCCeEEEcCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKV-DFRGGPSQAAKMTAG 109 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v-~f~~~~~~~~~F~~~ 109 (114)
..|+|++.++.|+....... . .+. ...+-.|...|+++ .|.+..| .+.|+++
T Consensus 310 ~~yda~~~~~~al~~a~~~~-~--~g~-----~~~~~~~~~al~~~~~~~g~~G-~~~f~~~ 362 (386)
T 3sg0_A 310 HLWDSMTLVENAIPAALKAA-K--PGT-----PEFRAAIRDQIEKSKDLALNNG-LSNMTPD 362 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-C--TTS-----HHHHHHHHHHHTTCCSEEETTE-EECCCSS
T ss_pred HHHHHHHHHHHHHHHhhhcc-C--CCC-----cchHHHHHHHHHhccCccccce-eEEECCC
Confidence 47899999999998864210 0 010 00123578888888 7887766 4788765
No 39
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=24.01 E-value=44 Score=18.53 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=13.5
Q ss_pred cceeecCCCCeEEEcCCCCc
Q psy15459 93 KVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 93 ~v~f~~~~~~~~~F~~~g~~ 112 (114)
.|.|. .|.++.||.+|+-
T Consensus 45 eV~~~--~G~ei~Fd~~G~W 62 (127)
T 3db7_A 45 EVIFT--NGNKVEFDKKGNW 62 (127)
T ss_dssp EEEET--TSCEEEECTTSCE
T ss_pred EEEEC--CCcEEEEeCCCCE
Confidence 45564 5789999999973
No 40
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=22.51 E-value=46 Score=18.45 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=13.2
Q ss_pred cceeecCCCCeEEEcCCCCc
Q psy15459 93 KVDFRGGPSQAAKMTAGWTS 112 (114)
Q Consensus 93 ~v~f~~~~~~~~~F~~~g~~ 112 (114)
.|.|. .|.++.||.+|+-
T Consensus 46 eV~l~--ng~el~Fd~~G~w 63 (128)
T 3elg_A 46 DVKLA--DGIELEFNSKGEW 63 (128)
T ss_dssp EEEET--TSCEEEECTTSCE
T ss_pred EEEEC--CCcEEEEeCCCCE
Confidence 45554 5788999999973
No 41
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=20.69 E-value=52 Score=21.36 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCchHHHHhhccceee--cCCCCeEEEcCCC
Q psy15459 49 FVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFR--GGPSQAAKMTAGW 110 (114)
Q Consensus 49 ~v~~aV~ala~aLh~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~v~f~--~~~~~~~~F~~~g 110 (114)
..|+|++.++.|+..... .+ . ....+-.|...|++..|. +..|..+.|+++|
T Consensus 292 ~~yda~~~l~~Al~~a~~------~g-~---~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~ 345 (391)
T 3eaf_A 292 QGFVNVWLLIKAIESVTS------QD-L---QERGGEALKEALEANTFDLGGITADTIDYEPGF 345 (391)
T ss_dssp HHHHHHHHHHHHHTTSCH------HH-H---HHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTB
T ss_pred HHHHHHHHHHHHHHHHHh------cC-C---CCCCHHHHHHHHHhCCCCCCCccccceeeCCCC
Confidence 478899999988854310 00 0 011234577777777776 4555257888654
Done!