RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15459
(114 letters)
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 94.5 bits (235), Expect = 3e-24
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 3 SEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHN-NTAFENQLQFVSDAVMAFAHAL 61
+E+WE++F CK +T+ R CTG+E++ + N E ++QFV DAV A AHAL
Sbjct: 333 AEYWEENFNCKLTISGSKKEDTD--RKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHAL 390
Query: 62 NDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGG 99
+ M+K+LC +G+C M+ G LLKY+R V+F G
Sbjct: 391 HHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGS 428
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 94.1 bits (234), Expect = 4e-24
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 4 EFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALND 63
+FWE F+C N R C + +N E+++ FV +AV A AHAL+
Sbjct: 328 DFWEQKFQCSLQNKRNH------RRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHK 381
Query: 64 MHKELCHGKKGLCEAMKPTKGSDLLK-YLRKVDFRG 98
M + LC LC+AMK G L K YL K++F
Sbjct: 382 MQRTLCPNTTKLCDAMKILDGKKLYKDYLLKINFTA 417
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 92.2 bits (229), Expect = 2e-23
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 4 EFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALND 63
+FWE F+C N + C + +N E+++ FV +AV A AHAL+
Sbjct: 329 DFWEQKFQCSLQNKRNH------RQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHK 382
Query: 64 MHKELCHGKKGLCEAMKPTKGSDLLK-YLRKVDFRG 98
M + LC LC+AMK G L K YL K+ F
Sbjct: 383 MQRTLCPQTTKLCDAMKILDGKKLYKEYLLKIQFTA 418
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 91.8 bits (228), Expect = 3e-23
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 3 SEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALN 62
EFW+ F+C+ P N F R CTG E L N ++++ FV +A+ A AH L
Sbjct: 342 PEFWQHRFQCRLPGHLLE--NPNFKRICTGNESLEENYV-QDSKMGFVINAIYAMAHGLQ 398
Query: 63 DMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGG 99
+MH LC G GLC+AMKP GS LL +L K F G
Sbjct: 399 NMHHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGV 435
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 69.6 bits (170), Expect = 2e-15
Identities = 11/102 (10%), Positives = 28/102 (27%), Gaps = 7/102 (6%)
Query: 4 EFWEDHFKCK--YPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQL-QFVSDAVMAFAHA 60
E + + + + +E + + ++ + D + A
Sbjct: 268 AAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKT 327
Query: 61 LNDMHKELCHGKKGL----CEAMKPTKGSDLLKYLRKVDFRG 98
L + L + T G +L + + +F G
Sbjct: 328 LQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFG 369
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 54.0 bits (129), Expect = 6e-10
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 17/99 (17%)
Query: 4 EFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQ----FVSDAVMAFAH 59
+ + + P +F+ K + E+ + DA++ +
Sbjct: 271 QAYSSLQTVTLLR-TVKPEFEKFSMEV--KSSVEKQGLNMEDYVNMFVEGFHDAILLYVL 327
Query: 60 ALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRG 98
AL+++ L G +++ F G
Sbjct: 328 ALHEV----------LRAGYSKKDGGKIIQQTWNRTFEG 356
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION
channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus}
PDB: 3om1_A* 3qlu_A* 3qlv_A
Length = 393
Score = 52.9 bits (126), Expect = 1e-09
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 18 SRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVS---DAVMAFAHALNDMHKELCHGKKG 74
+ P+ EF R+ + + + + + DAV A+ ++++ G K
Sbjct: 253 TSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKP 312
Query: 75 L-CEAMKPTK-GSDLLKYLRKVDFRG 98
L C + G+ L+ YLR V++ G
Sbjct: 313 LACTSANIWPHGTSLMNYLRMVEYDG 338
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 49.3 bits (117), Expect = 3e-08
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 24 TEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTK 83
+ K + + DAV + A+ + C KP +
Sbjct: 266 SMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV--SSLQCNRHKPWR 323
Query: 84 -GSDLLKYLRKVDFRG 98
G+ + +++ + G
Sbjct: 324 FGTRFMSLIKEAHWEG 339
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL
membrane, endoplasmic reticulum, glycoprotein, ION TRA
ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus}
PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Length = 376
Score = 47.5 bits (112), Expect = 9e-08
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 10 FKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELC 69
F+ + S E T KE + + DAV A ++ K+
Sbjct: 236 FQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRI 295
Query: 70 H----GKKGLCEAMKPTK---GSDLLKYLRKVDFRG 98
G G C A G ++ + L++V G
Sbjct: 296 EISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEG 331
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 44.8 bits (105), Expect = 9e-07
Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 14/87 (16%)
Query: 15 PNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQL----QFVSDAVMAFAHALNDMHKELCH 70
P EF + N T + D ++ + A+ +
Sbjct: 282 YKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTET------ 335
Query: 71 GKKGLCEAMKPTKGSDLLKYLRKVDFR 97
L + T G ++ + + F+
Sbjct: 336 ----LAQGGTVTDGENITQRMWNRSFQ 358
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 43.2 bits (101), Expect = 4e-06
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 26 FNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMH--KELCHGKKGLCEAMKPTK 83
+ +N+ +SDAV A A++++ + + +G K
Sbjct: 257 SALRYAPDGIIGLQLINGKNESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWK 316
Query: 84 -GSDLLKYLRKVDFRGGPS 101
G + L + G +
Sbjct: 317 TGPLFKRVLMSSKYPDGVT 335
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane,
transport protein; HET: NAG BMA MAN; 2.50A {Rattus
norvegicus}
Length = 384
Score = 42.4 bits (99), Expect = 6e-06
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 12/84 (14%)
Query: 22 YNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELC----HGKKGLCE 77
+ T +R T + T+ D V A A + ++ G G C
Sbjct: 256 WRTSDSRDHTRVDWKRPKYTS-----ALTYDGVKVMAEAFQSLRRQRIDISRRGNAGDCL 310
Query: 78 AMKPT---KGSDLLKYLRKVDFRG 98
A +G D+ + L++V F G
Sbjct: 311 ANPAVPWGQGIDIQRALQQVRFEG 334
>3o21_A Glutamate receptor 3; periplasmatic binding protein,
oligomerization, membrane, TR protein; HET: NAG; 2.20A
{Rattus norvegicus} PDB: 3p3w_A
Length = 389
Score = 42.5 bits (99), Expect = 7e-06
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 10/91 (10%)
Query: 18 SRTPYNTEFNRTC---TGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELC----H 70
+ P +F + +E N + DA++ A A + ++
Sbjct: 247 NENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRR 306
Query: 71 GKKGLCEAMKPTK---GSDLLKYLRKVDFRG 98
G G C A G D+ + L+ V +G
Sbjct: 307 GSAGDCLANPAVPWSQGIDIERALKMVQVQG 337
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 35.2 bits (80), Expect = 0.002
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 45 NQLQFVSDAVMAFAHALNDMHKE-----LCHGKKGLCEAMKPTKGSDLLKYLRKVDFRGG 99
V D + A +DM E + + + L +YL V F G
Sbjct: 258 GLPARVRDGIAIITTAASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR 317
Query: 100 P 100
Sbjct: 318 D 318
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane,
glycoprotein, transport, membrane, postsynaptic cell
membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus
norvegicus}
Length = 823
Score = 30.5 bits (68), Expect = 0.094
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 7/73 (9%)
Query: 33 KEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKE------LCHGKKGLCEAMKPTK-GS 85
KE + + DAV A ++ K+ + L P G
Sbjct: 259 KEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGV 318
Query: 86 DLLKYLRKVDFRG 98
++ + L++V G
Sbjct: 319 EIERALKQVQVEG 331
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.100
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 9 HFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKEL 68
+ + P+ Y + +R + + N + + A++ L L
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL----ELRPAKNVL 154
Query: 69 CHGKKG 74
G G
Sbjct: 155 IDGVLG 160
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY
crystallography, protein structure, ABC transport
systems, transport protein; 1.53A {Escherichia coli}
SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A
1z17_A 1z18_A 2liv_A
Length = 346
Score = 24.5 bits (54), Expect = 9.0
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 15/47 (31%)
Query: 52 DAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRG 98
AV + A AL E + L+K L+
Sbjct: 282 AAVQSLATAL---------------ERTGSDEPLALVKDLKANGANT 313
>1ut7_A No apical meristem protein; transcription regulation,
transcription, transcription factor, DNA binding,
abscisic acid response, NAC domain; 1.9A {Arabidopsis
thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A
3swm_A
Length = 171
Score = 24.2 bits (53), Expect = 9.5
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 13/30 (43%)
Query: 13 KYPNGSRTPYNTEFNRT-------CTGKEK 35
KYPNGSR NR TG +K
Sbjct: 82 KYPNGSRP------NRVAGSGYWKATGTDK 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.423
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,705,643
Number of extensions: 83165
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 23
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)