RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15459
(114 letters)
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 477
Score = 88.1 bits (217), Expect = 2e-22
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 3 SEFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALN 62
EFW+ F+C+ P N F + CTG E L N ++++ FV +A+ A AH L
Sbjct: 334 PEFWQHRFQCRLPG--HLLENPNFKKVCTGNESLEENYV-QDSKMGFVINAIYAMAHGLQ 390
Query: 63 DMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRG 98
+MH LC G GLC+AMKP G LL +L K F G
Sbjct: 391 NMHHALCPGHVGLCDAMKPIDGRKLLDFLIKSSFVG 426
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 401
Score = 42.4 bits (98), Expect = 3e-06
Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 13/97 (13%)
Query: 4 EFWEDHFKCKYPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQL--QFVSDAVMAFAHAL 61
+ + + P +F+ + N + + DA++ + AL
Sbjct: 269 QAYSSLQTVTLLR-TVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDAILLYVLAL 327
Query: 62 NDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKVDFRG 98
+++ L G +++ F G
Sbjct: 328 HEV----------LRAGYSKKDGGKIIQQTWNRTFEG 354
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
natriuretic peptide receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 425
Score = 41.3 bits (95), Expect = 6e-06
Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 10/85 (11%)
Query: 14 YPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSDAVMAFAHALNDMHKELCHGKK 73
N + + K + + D ++ + A+ +
Sbjct: 285 PDNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDGLLLYVQAVTET--------- 335
Query: 74 GLCEAMKPTKGSDLLKYLRKVDFRG 98
L + T G ++ + + F+G
Sbjct: 336 -LAQGGTVTDGENITQRMWNRSFQG 359
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 85
Score = 26.6 bits (59), Expect = 0.37
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 65 HKELCHGKKGLCEAMKPTKGSDLLKYLRKVDF 96
HK+ H ++GL + + K LL YLR D
Sbjct: 44 HKKDHHSRRGLLKMVG--KRRRLLAYLRNKDV 73
>d1aiwa_ b.72.2.1 (A:) Cellulose-binding domain of endoglucanase Z
{Erwinia chrysanthemi [TaxId: 556]}
Length = 62
Score = 24.4 bits (53), Expect = 1.3
Identities = 3/33 (9%), Positives = 8/33 (24%)
Query: 14 YPNGSRTPYNTEFNRTCTGKEKLSHNNTAFENQ 46
YPN + + + + +
Sbjct: 10 YPNWVSKDWAGGQPTHNEAGQSIVYKGNLYTAN 42
>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 392
Score = 25.3 bits (55), Expect = 2.2
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 42 AFENQ-LQFVSDAVMAFAHALNDMHKELCHGKKGLCEAMKPTKGSDLLKYLRKV 94
+ + LQ V+ ++ A +K K K T G+DL+ +L+ V
Sbjct: 330 SLRSYHLQIVTKYILIPASQQPKENKTSEDPSKL---EAKGTGGTDLMNFLKTV 380
>d1vs5o1 a.16.1.2 (O:1-88) Ribosomal protein S15 {Escherichia coli
[TaxId: 562]}
Length = 88
Score = 24.3 bits (53), Expect = 2.2
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 65 HKELCHGKKGLCEAMKPTKGSDLLKYLRKVDF 96
HK+ H ++GL ++ LL YL++ D
Sbjct: 45 HKKDHHSRRGLL--RMVSQRRKLLDYLKRKDV 74
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus
[TaxId: 274]}
Length = 84
Score = 24.3 bits (53), Expect = 2.2
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 65 HKELCHGKKGLCEAMKPTKGSDLLKYLRKVDF 96
HK+ H +GL + + LL+YL++ D
Sbjct: 43 HKKDHHSHRGLLMMVG--QRRRLLRYLQREDP 72
>d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241
{Nitrosomonas europaea [TaxId: 915]}
Length = 86
Score = 24.0 bits (51), Expect = 3.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 32 GKEKLSHNNTAFENQ 46
GKEKL NT ++NQ
Sbjct: 58 GKEKLEETNTEYQNQ 72
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga
maritima [TaxId: 2336]}
Length = 200
Score = 24.1 bits (52), Expect = 4.3
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 50 VSDAVMAFAHALNDMHKELCHGKKG 74
V V A A AL +M KKG
Sbjct: 26 VGSVVGAMACALAEMVANFTRKKKG 50
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase
associated protein, CAP {Dictyostelium discoideum
[TaxId: 44689]}
Length = 176
Score = 23.2 bits (50), Expect = 8.4
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 32 GKEKLSHNNTAFENQLQFVSDAVMAFA 58
GK + S+ ++ F N L +S+++ +
Sbjct: 74 GKIRDSNRSSKFFNNLSAISESIGFLS 100
>d1qwoa_ c.60.1.2 (A:) Phytase
(myo-inositol-hexakisphosphate-3-phosphohydrolase)
{Aspergillus fumigatus [TaxId: 5085]}
Length = 435
Score = 23.3 bits (49), Expect = 9.0
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 17 GSRTPYNTEFNRTCTGKEKLSHNNTAFENQLQFVSD 52
G+R P +++ + + N T F+ + F+
Sbjct: 53 GARYPTSSKSKKYKKLVTAIQANATDFKGKFAFLKT 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.423
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 428,298
Number of extensions: 16282
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 16
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)