BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15460
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V+ F V G++ A+RR+ G FS +GSDGW+ R V +G E E G ++++ Q+
Sbjct: 255 VVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPE 314
Query: 83 VRGFDEYFLNLTVENNRRDPWFIEAKQN 110
VR FD+YFL L ++ N R+PWF E Q+
Sbjct: 315 VRSFDDYFLKLRLDTNTRNPWFPEFWQH 342
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V+ F V G++ A+RR+ G FS +GSDGW+ R V +G E E G ++++ Q+
Sbjct: 260 VVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPE 319
Query: 83 VRGFDEYFLNLTVENNRRDPWFIEAKQN 110
VR FD+YFL L ++ N R+PWF E Q+
Sbjct: 320 VRSFDDYFLKLRLDTNTRNPWFPEFWQH 347
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 22 GVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN 81
V++F +D+++ ++ A +R + G+F WVGSD W ++ E EG +++QP+
Sbjct: 250 AVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRA 309
Query: 82 PVRGFDEYFLNLTVENNRRDPWFIE 106
V GFD YF + T+ENNRR+ WF E
Sbjct: 310 TVEGFDAYFTSRTLENNRRNVWFAE 334
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 53/85 (62%)
Query: 22 GVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN 81
V++F +D+++ ++ A +R + G+F WVGSD W ++ E EG +++QP+
Sbjct: 250 AVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRA 309
Query: 82 PVRGFDEYFLNLTVENNRRDPWFIE 106
V GFD YF + T+ENNRR+ WF E
Sbjct: 310 TVEGFDAYFTSRTLENNRRNVWFAE 334
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V F V G++ A+RR+ G F +GSDGW+ R V+DG + E G ++++ Q+
Sbjct: 261 VACFCEGMTVRGLLMAMRRLGLAGEFLLLGSDGWADRYDVTDGYQREAVGGITIKLQSPD 320
Query: 83 VRGFDEYFLNLTVENNRRDPWFIEAKQN 110
V+ FD+Y+L L E N R+PWF E Q+
Sbjct: 321 VKWFDDYYLKLRPETNHRNPWFQEFWQH 348
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V++F + ++ A R+NA+ F+WV SDGW A+ + GSE G ++L+ ++P
Sbjct: 248 VVLFMRSDDSRELIAAANRVNAS--FTWVASDGWGAQESIVKGSEHVAYGAITLELASHP 305
Query: 83 VRGFDEYFLNLTVENNRRDPWF 104
VR FD YF +L NN R+PWF
Sbjct: 306 VRQFDRYFQSLNPYNNHRNPWF 327
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V++F + ++ A R NA+ F+WV SDGW A+ + GSE G ++L+ + P
Sbjct: 247 VVLFMRSDDSRELIAAASRANAS--FTWVASDGWGAQESIIKGSEHVAYGAITLELASQP 304
Query: 83 VRGFDEYFLNLTVENNRRDPWF 104
VR FD YF +L NN R+PWF
Sbjct: 305 VRQFDRYFQSLNPYNNHRNPWF 326
>pdb|1VL4|A Chain A, Crystal Structure Of A Putative Modulator Of A Dna Gyrase
(Tm0727) From Thermotoga Maritima Msb8 At 1.95 A
Resolution
pdb|1VL4|B Chain B, Crystal Structure Of A Putative Modulator Of A Dna Gyrase
(Tm0727) From Thermotoga Maritima Msb8 At 1.95 A
Resolution
Length = 447
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 72 GTLSLQPQANPVRGFDEYFLNLTVENNRRDPWFIEA 107
GT Q NP + F+E NL V+++ +F E
Sbjct: 74 GTFRTQVLENPEKCFEEALSNLQVKDSEEKEYFFEG 109
>pdb|1TMF|3 Chain 3, Three-Dimensional Structure Of Theiler Murine
Encephalomyelitis Virus (Bean Strain)
Length = 232
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 90 FLNLTVENNRRDPWFIEAKQNSKTSNVDYNIEL 122
FL NN+R P+F TS VDY + L
Sbjct: 53 FLGNPNTNNKRYPYFSATNSVPATSMVDYQVAL 85
>pdb|1TME|3 Chain 3, Three-Dimensional Structure Of Theiler Virus
Length = 236
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 90 FLNLTVENNRRDPWFIEAKQNSKTSNVDYNIEL 122
FL NN+R P+F TS VDY + L
Sbjct: 53 FLGNPNSNNKRYPYFSATNSVPTTSLVDYQVAL 85
>pdb|1TUU|A Chain A, Acetate Kinase Crystallized With Atpgs
pdb|1TUU|B Chain B, Acetate Kinase Crystallized With Atpgs
pdb|1TUY|A Chain A, Acetate Kinase Complexed With Adp, Alf3 And Acetate
pdb|1TUY|B Chain B, Acetate Kinase Complexed With Adp, Alf3 And Acetate
Length = 399
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 34 GMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
G+++ + +NA G+ G + ++ L +G E ++ L P NP
Sbjct: 77 GVIKDMGEINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCFELAPLHNP 125
>pdb|1G99|A Chain A, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
pdb|1G99|B Chain B, An Ancient Enzyme: Acetate Kinase From Methanosarcina
Thermophila
Length = 408
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 34 GMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
G+++ + +NA G+ G + ++ L +G E ++ L P NP
Sbjct: 77 GVIKDMGEINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCFELAPLHNP 125
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 15 NLLLLIPGVIVFGSDQEVAGMMR-----AVRRMNATGNFSWVGSDGWSARGLVSDGSEAE 69
N L P ++ G+D E AG++R A+R GN W+ G S G + +
Sbjct: 149 NFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQ 208
Query: 70 VEGTLSLQPQA 80
++++ QA
Sbjct: 209 AAASVAVSLQA 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,702,737
Number of Sequences: 62578
Number of extensions: 141249
Number of successful extensions: 295
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 17
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)