Query psy15460
Match_columns 123
No_of_seqs 127 out of 1014
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:39:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1056|consensus 99.8 4.7E-20 1E-24 146.0 9.2 112 2-119 239-350 (878)
2 cd06375 PBP1_mGluR_groupII Lig 99.8 1.4E-18 3E-23 132.0 11.0 109 3-119 220-328 (458)
3 cd06365 PBP1_Pheromone_recepto 99.8 3.5E-18 7.6E-23 130.2 11.7 105 5-115 222-326 (469)
4 cd06364 PBP1_CaSR Ligand-bindi 99.7 7.3E-17 1.6E-21 124.1 11.8 106 5-118 235-341 (510)
5 cd06376 PBP1_mGluR_groupIII Li 99.7 9.1E-17 2E-21 122.1 11.5 109 4-118 220-328 (463)
6 cd06374 PBP1_mGluR_groupI Liga 99.7 1.1E-15 2.4E-20 116.4 10.9 110 3-118 232-342 (472)
7 cd06362 PBP1_mGluR Ligand bind 99.6 1.4E-14 3.1E-19 109.6 11.4 110 3-118 218-327 (452)
8 cd06361 PBP1_GPC6A_like Ligand 99.0 2.6E-09 5.6E-14 80.3 9.0 83 6-94 225-308 (403)
9 PF01094 ANF_receptor: Recepto 97.7 0.00011 2.3E-09 53.3 6.5 77 20-96 180-258 (348)
10 cd06363 PBP1_Taste_receptor Li 97.5 0.00097 2.1E-08 50.2 9.3 82 5-92 225-307 (410)
11 cd06350 PBP1_GPCR_family_C_lik 97.5 0.0012 2.7E-08 48.1 9.2 82 5-92 208-292 (348)
12 cd06381 PBP1_iGluR_delta_like 97.1 0.0029 6.2E-08 47.3 7.1 60 20-80 200-261 (363)
13 cd06379 PBP1_iGluR_NMDA_NR1 N- 96.7 0.012 2.7E-07 43.7 7.8 66 3-80 202-268 (377)
14 cd06378 PBP1_iGluR_NMDA_NR2 N- 96.6 0.0054 1.2E-07 45.8 5.5 47 6-56 184-231 (362)
15 cd06367 PBP1_iGluR_NMDA N-term 96.5 0.014 3.1E-07 43.0 7.2 58 20-80 195-253 (362)
16 cd06390 PBP1_iGluR_AMPA_GluR1 96.5 0.014 3E-07 43.6 6.9 74 19-94 171-246 (364)
17 cd06391 PBP1_iGluR_delta_2 N-t 95.9 0.04 8.6E-07 41.8 6.8 73 20-92 200-273 (400)
18 cd06366 PBP1_GABAb_receptor Li 95.7 0.061 1.3E-06 39.4 7.2 86 3-93 181-273 (350)
19 KOG4440|consensus 95.0 0.068 1.5E-06 42.8 5.4 55 18-79 223-278 (993)
20 cd06269 PBP1_glutamate_recepto 94.7 0.3 6.6E-06 34.1 7.9 39 20-59 196-235 (298)
21 cd06352 PBP1_NPR_GC_like Ligan 94.4 0.2 4.3E-06 37.2 6.6 75 20-94 195-282 (389)
22 cd06384 PBP1_NPR_B Ligand-bind 93.8 0.57 1.2E-05 35.2 8.1 49 3-57 192-241 (399)
23 cd06373 PBP1_NPR_like Ligand b 93.3 0.52 1.1E-05 35.2 7.2 86 3-94 191-289 (396)
24 cd06382 PBP1_iGluR_Kainate N-t 92.0 1.5 3.3E-05 31.7 8.0 86 3-94 170-256 (327)
25 cd06371 PBP1_sensory_GC_DEF_li 91.6 0.72 1.6E-05 34.5 6.1 50 3-56 176-231 (382)
26 cd06385 PBP1_NPR_A Ligand-bind 91.6 1.1 2.4E-05 33.6 7.1 38 20-57 203-241 (405)
27 cd06372 PBP1_GC_G_like Ligand- 91.5 0.65 1.4E-05 34.7 5.7 35 19-53 196-231 (391)
28 cd06369 PBP1_GC_C_enterotoxin_ 91.4 0.83 1.8E-05 34.6 6.0 61 18-81 207-267 (380)
29 cd06387 PBP1_iGluR_AMPA_GluR3 91.1 2.3 4.9E-05 32.1 8.3 71 20-94 180-254 (372)
30 cd06351 PBP1_iGluR_N_LIVBP_lik 91.1 2 4.3E-05 30.7 7.8 73 20-93 186-260 (328)
31 cd06383 PBP1_iGluR_AMPA_Like N 90.2 2.2 4.7E-05 32.0 7.5 35 20-54 185-221 (368)
32 cd06386 PBP1_NPR_C_like Ligand 89.6 1.9 4.1E-05 32.3 6.8 37 20-56 195-232 (387)
33 cd04509 PBP1_ABC_transporter_G 89.5 1.5 3.2E-05 30.5 5.9 80 3-88 180-259 (299)
34 KOG1053|consensus 88.4 1.2 2.7E-05 37.3 5.3 48 5-56 221-269 (1258)
35 cd06368 PBP1_iGluR_non_NMDA_li 84.5 8.8 0.00019 27.6 7.7 35 20-54 181-216 (324)
36 cd06370 PBP1_Speract_GC_like L 84.3 6.2 0.00013 29.7 7.0 36 20-55 198-235 (404)
37 cd06380 PBP1_iGluR_AMPA N-term 81.2 11 0.00024 27.9 7.3 35 20-54 184-219 (382)
38 cd06392 PBP1_iGluR_delta_1 N-t 74.2 13 0.00027 28.5 5.8 51 21-75 201-252 (400)
39 cd06346 PBP1_ABC_ligand_bindin 73.5 15 0.00033 26.3 6.0 82 3-92 181-262 (312)
40 cd06394 PBP1_iGluR_Kainate_KA1 70.3 23 0.0005 26.3 6.4 36 19-54 186-222 (333)
41 cd06340 PBP1_ABC_ligand_bindin 69.6 15 0.00032 26.9 5.3 45 3-53 188-232 (347)
42 cd06389 PBP1_iGluR_AMPA_GluR2 66.7 50 0.0011 24.6 7.6 74 19-94 176-251 (370)
43 cd06393 PBP1_iGluR_Kainate_Glu 65.9 53 0.0012 24.5 8.0 72 20-94 193-267 (384)
44 cd06342 PBP1_ABC_LIVBP_like Ty 64.8 25 0.00055 25.2 5.6 83 3-93 179-263 (334)
45 PF04208 MtrA: Tetrahydrometha 63.7 8.3 0.00018 26.1 2.6 38 3-44 55-95 (176)
46 PRK14053 methyltransferase; Pr 62.5 9.3 0.0002 26.1 2.7 48 3-55 52-103 (194)
47 cd06388 PBP1_iGluR_AMPA_GluR4 60.9 60 0.0013 24.3 7.1 69 19-92 178-251 (371)
48 cd01391 Periplasmic_Binding_Pr 60.4 41 0.00088 22.4 5.8 38 20-58 183-221 (269)
49 PRK00964 tetrahydromethanopter 59.6 11 0.00023 26.6 2.7 49 3-55 59-110 (225)
50 TIGR01111 mtrA N5-methyltetrah 59.1 11 0.00024 26.6 2.7 48 3-55 59-110 (238)
51 cd06338 PBP1_ABC_ligand_bindin 55.5 39 0.00085 24.4 5.3 46 3-54 185-230 (345)
52 cd06347 PBP1_ABC_ligand_bindin 55.3 37 0.00081 24.2 5.1 68 3-78 180-247 (334)
53 PF05339 DUF739: Protein of un 50.5 15 0.00032 23.9 2.1 37 21-57 69-105 (138)
54 cd06268 PBP1_ABC_transporter_L 50.2 52 0.0011 22.6 5.1 67 4-78 180-246 (298)
55 cd06330 PBP1_Arsenic_SBP_like 47.5 62 0.0013 23.4 5.3 49 3-56 184-232 (346)
56 COG3925 N-terminal domain of t 47.1 17 0.00037 22.1 1.8 30 18-55 39-68 (103)
57 cd06344 PBP1_ABC_ligand_bindin 44.1 1.2E+02 0.0026 21.9 6.7 78 5-90 182-259 (332)
58 PF03807 F420_oxidored: NADP o 42.4 61 0.0013 18.7 3.9 32 20-53 62-93 (96)
59 cd06332 PBP1_aromatic_compound 41.4 97 0.0021 22.1 5.4 83 4-92 176-260 (333)
60 cd06359 PBP1_Nba_like Type I p 37.0 1.4E+02 0.0031 21.5 5.8 84 3-92 175-260 (333)
61 cd06360 PBP1_alkylbenzenes_lik 36.8 1.1E+02 0.0025 21.8 5.2 49 3-56 178-226 (336)
62 PF13458 Peripla_BP_6: Peripla 35.3 1.5E+02 0.0032 21.2 5.6 47 3-54 179-225 (343)
63 PRK07742 phosphate butyryltran 35.0 1.3E+02 0.0028 22.0 5.3 49 1-54 1-49 (299)
64 PF11588 DUF3243: Protein of u 33.9 13 0.00029 21.9 -0.0 25 86-110 38-62 (81)
65 cd06336 PBP1_ABC_ligand_bindin 33.7 1.8E+02 0.004 21.1 5.9 37 5-46 184-221 (347)
66 KOG3045|consensus 32.6 96 0.0021 22.9 4.0 37 18-55 227-266 (325)
67 cd06327 PBP1_SBP_like_1 Peripl 32.1 1.3E+02 0.0029 21.6 5.0 44 3-52 179-222 (334)
68 PF01113 DapB_N: Dihydrodipico 30.4 1.4E+02 0.003 18.5 4.6 35 20-57 68-102 (124)
69 COG4063 MtrA Tetrahydromethano 29.9 61 0.0013 22.5 2.6 39 3-45 58-99 (238)
70 PRK11890 phosphate acetyltrans 29.8 1.6E+02 0.0034 22.0 4.9 47 2-53 9-55 (312)
71 PF07494 Reg_prop: Two compone 29.6 42 0.00091 14.5 1.3 9 45-54 15-23 (24)
72 COG4471 Uncharacterized protei 28.0 1.2E+02 0.0027 18.2 3.3 28 19-46 34-61 (90)
73 cd06343 PBP1_ABC_ligand_bindin 27.9 2.4E+02 0.0052 20.5 6.6 46 4-56 189-234 (362)
74 KOG0073|consensus 26.6 1.1E+02 0.0023 21.0 3.2 42 67-113 41-82 (185)
75 COG3560 FMR2 Predicted oxidore 24.8 58 0.0013 22.3 1.8 15 16-30 46-60 (200)
76 COG3562 KpsS Capsule polysacch 24.4 2.2E+02 0.0047 21.9 4.8 49 3-57 69-117 (403)
77 PHA00006 D external scaffoldin 23.4 52 0.0011 20.8 1.3 31 44-78 36-66 (151)
78 cd06348 PBP1_ABC_ligand_bindin 22.6 2.5E+02 0.0054 20.2 5.0 46 4-56 182-227 (344)
79 PF13380 CoA_binding_2: CoA bi 22.5 1.8E+02 0.0038 17.9 3.6 35 20-56 56-90 (116)
80 cd06377 PBP1_iGluR_NMDA_NR3 N- 21.9 1.4E+02 0.003 22.9 3.5 32 18-54 209-241 (382)
81 PF05148 Methyltransf_8: Hypot 20.0 1.6E+02 0.0036 20.8 3.3 37 18-55 121-160 (219)
No 1
>KOG1056|consensus
Probab=99.82 E-value=4.7e-20 Score=146.05 Aligned_cols=112 Identities=34% Similarity=0.668 Sum_probs=102.9
Q ss_pred ChhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCC
Q psy15460 2 PIDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN 81 (123)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~ 81 (123)
.||+++++++++++ |+|||+|++..+++.++.++.+.+++|+++||+|++|+..........+..+|++++.+++.
T Consensus 239 ~~~~~l~kl~~~~~----a~vvV~F~~~~~~r~~~~aa~~~n~~g~~~wiaSd~W~~~~~~~~~~e~~a~g~i~i~l~~~ 314 (878)
T KOG1056|consen 239 EFDCVLRKLLETPN----ARVVVVFCRGEDARRLLKAARRANLTGEFLWIASDGWASQNSPTEAPEREAEGAITIKLASP 314 (878)
T ss_pred HHHHHHHHHhhcCC----CeEEEEecCcchHHHHHHHHHHhCCCcceEEEecchhhccCChhhhhhhhhceeEEEEecCC
Confidence 48999999999999 99999999999999999999999999888999999999876665444458899999999999
Q ss_pred cCCChhhhhhhhcCCCCCCChhHHHHHHHhcCCCccCC
Q psy15460 82 PVRGFDEYFLNLTVENNRRDPWFIEAKQNSKTSNVDYN 119 (123)
Q Consensus 82 ~ip~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~~c~~~ 119 (123)
.+|+|++|+++++|.++.+|+|++|||++.|+ |.++
T Consensus 315 ~v~~F~~y~~s~~p~nn~~n~w~~e~w~~~f~--C~l~ 350 (878)
T KOG1056|consen 315 QVPGFDRYFQSLHPENNRRNPWFAEFWEDKFN--CSLP 350 (878)
T ss_pred cchhHHHHHHhcCccccccCcccchhhhhccc--CCCC
Confidence 99999999999999999999999999999998 7776
No 2
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=99.78 E-value=1.4e-18 Score=132.02 Aligned_cols=109 Identities=32% Similarity=0.672 Sum_probs=92.7
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ 82 (123)
++.++.+++..++ |+|||+++....+..++.++.+.++. ++||++++|.............++|+++|.++..+
T Consensus 220 ~~~~l~~l~~~~~----a~vVvl~~~~~~~~~ll~~a~~~g~~--~~wigs~~~~~~~~~~~~~~~~~~G~i~~~~~~~~ 293 (458)
T cd06375 220 YDSVIRKLLQKPN----ARVVVLFTRSEDARELLAAAKRLNAS--FTWVASDGWGAQESIVKGSEDVAEGAITIELASHP 293 (458)
T ss_pred HHHHHHHHhccCC----CEEEEEecChHHHHHHHHHHHHcCCc--EEEEEeccccccchhhhccchhhceEEEEEecccc
Confidence 4567777777677 99999999999999999999988876 69999999975433333344678999999999999
Q ss_pred CCChhhhhhhhcCCCCCCChhHHHHHHHhcCCCccCC
Q psy15460 83 VRGFDEYFLNLTVENNRRDPWFIEAKQNSKTSNVDYN 119 (123)
Q Consensus 83 ip~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~~c~~~ 119 (123)
+|+|++|+++++|.++++|+|+.+||+..|+ |..+
T Consensus 294 i~~f~~yl~~l~p~~~~~n~w~~e~w~~~f~--c~~~ 328 (458)
T cd06375 294 IPDFDRYFQSLTPETNTRNPWFKDFWEQKFQ--CSLQ 328 (458)
T ss_pred chhHHHHHHhCCcCcCCCCcHHHHHHHHHcC--CCCC
Confidence 9999999999999999999999999999998 6653
No 3
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=99.77 E-value=3.5e-18 Score=130.16 Aligned_cols=105 Identities=13% Similarity=0.245 Sum_probs=89.0
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCcCC
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVR 84 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip 84 (123)
..++++ ..++ |+|||+++....+..++.++.+.+..+ ++||++++|...........+.++|++++.++..++|
T Consensus 222 ~~l~~i-~~~~----arvIvl~~~~~~~~~l~~~~~~~~~~~-~~wi~s~~w~~~~~~~~~~~~~~~G~lg~~~~~~~~~ 295 (469)
T cd06365 222 KYYNQI-MTSS----AKVIIIYGDTDSLLEVSFRLWQYLLIG-KVWITTSQWDVTTSPKDFTLNSFHGTLIFSHHHSEIP 295 (469)
T ss_pred HHHHHh-hcCC----CeEEEEEcCcHHHHHHHHHHHHhccCc-eEEEeeccccccccccccccceeeEEEEEEeccCcCc
Confidence 344444 4466 999999999888888888888888888 8999999997655444445677999999999999999
Q ss_pred ChhhhhhhhcCCCCCCChhHHHHHHHhcCCC
Q psy15460 85 GFDEYFLNLTVENNRRDPWFIEAKQNSKTSN 115 (123)
Q Consensus 85 ~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~~ 115 (123)
+|++|+.+++|.++++|+|+.+||+..|+|.
T Consensus 296 ~f~~fl~~l~~~~~~~npw~~efwe~~f~c~ 326 (469)
T cd06365 296 GFKDFLQTVNPSKYPEDIFLEKLWWIYFNCS 326 (469)
T ss_pred chHHHhhccCcccCCCccHHHhhHhHhcCcc
Confidence 9999999999999999999999999999843
No 4
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=99.72 E-value=7.3e-17 Score=124.13 Aligned_cols=106 Identities=17% Similarity=0.380 Sum_probs=91.6
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccC-CCccccccceEEEeecCCcC
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVS-DGSEAEVEGTLSLQPQANPV 83 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~-~~~~~~~~gsL~f~~~~~~i 83 (123)
.++.++ ..++ ++|||+++....+..++.++.+.++.+ ++||++++|....... ......++|++++.++..++
T Consensus 235 ~~l~kl-k~~~----a~vVvl~~~~~~~~~ll~qa~~~g~~~-~iwI~s~~w~~~~~~~~~~~~~~~gg~lg~~~~~~~i 308 (510)
T cd06364 235 RVVEVI-QNST----AKVIVVFSSGPDLEPLIKEIVRRNITG-KIWLASEAWASSSLIAMPEYFDVMGGTIGFALKAGQI 308 (510)
T ss_pred HHHHHH-HhcC----CeEEEEEeCcHHHHHHHHHHHHhCCCC-cEEEEEchhhcccccccCCccceeeEEEEEEECCCcC
Confidence 455555 3466 999999999999999999999999999 8999999997655443 34567899999999999999
Q ss_pred CChhhhhhhhcCCCCCCChhHHHHHHHhcCCCccC
Q psy15460 84 RGFDEYFLNLTVENNRRDPWFIEAKQNSKTSNVDY 118 (123)
Q Consensus 84 p~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~~c~~ 118 (123)
++|++|+.+++|.++++++|+.++|+..|+ |.+
T Consensus 309 ~~f~~~l~~l~p~~~~~~~~~~~~we~~f~--c~~ 341 (510)
T cd06364 309 PGFREFLQKVHPKKSSHNGFAKEFWEETFN--CYL 341 (510)
T ss_pred ccHHHHHHhCCcccCCCChHHHHHHHHhcC--CCC
Confidence 999999999999999999999999999998 654
No 5
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.72 E-value=9.1e-17 Score=122.09 Aligned_cols=109 Identities=35% Similarity=0.658 Sum_probs=92.2
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCcC
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPV 83 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~i 83 (123)
...+.++..+++ ++|||+++....+..++.++.+.++.++++||+++.|+............++|++++.++..++
T Consensus 220 ~~~l~~ik~~~~----~~vIvl~~~~~~~~~ll~~a~~~~~~g~~~wig~d~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 295 (463)
T cd06376 220 DKIIKRLLETPN----ARAVIIFANEDDIRRVLEAAKRANQVGHFLWVGSDSWGAKISPILQQEDVAEGAITILPKRASI 295 (463)
T ss_pred HHHHHHHhccCC----CeEEEEecChHHHHHHHHHHHhcCCcCceEEEEeccccccccccccCcceeeeEEEEEeccccc
Confidence 456666666567 9999999999999999999988888775799999999754433333456789999999999999
Q ss_pred CChhhhhhhhcCCCCCCChhHHHHHHHhcCCCccC
Q psy15460 84 RGFDEYFLNLTVENNRRDPWFIEAKQNSKTSNVDY 118 (123)
Q Consensus 84 p~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~~c~~ 118 (123)
+||++|+.+++|.++++++|+.++|+..|+ |.+
T Consensus 296 ~~F~~~~~~l~~~~~~~~~~~~~~w~~~f~--c~~ 328 (463)
T cd06376 296 EGFDAYFTSRTLENNRRNVWFAEFWEENFN--CKL 328 (463)
T ss_pred hhHHHHHHhCCcccCCCCcHHHHHHHHhCC--Ccc
Confidence 999999999999999999999999999998 554
No 6
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.66 E-value=1.1e-15 Score=116.42 Aligned_cols=110 Identities=34% Similarity=0.623 Sum_probs=91.4
Q ss_pred hhHHHHhhcc-CCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCC
Q psy15460 3 IDKCIYDVFP-TTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN 81 (123)
Q Consensus 3 ~~~~i~~~~~-~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~ 81 (123)
++..+.++.. .+. |+|||+++....+..++.++.+.++.++++||+++.|..............+|++++.++..
T Consensus 232 ~~~~l~~lk~~~~d----a~vvv~~~~~~~~~~~l~~a~~~g~~~~~~wi~s~~~~~~~~~~~~~~~~~~G~l~~~~~~~ 307 (472)
T cd06374 232 FDRLLRKLRSRLPK----ARVVVCFCEGMTVRGLLMAMRRLGVGGEFQLIGSDGWADRDDVVEGYEEEAEGGITIKLQSP 307 (472)
T ss_pred HHHHHHHHHhcCCC----cEEEEEEechHHHHHHHHHHHHhcCCCceEEEEecccccchHhhhcchhhhheeEEEEecCC
Confidence 4556777766 366 99999999888888889999888887647999999997543233334566799999999999
Q ss_pred cCCChhhhhhhhcCCCCCCChhHHHHHHHhcCCCccC
Q psy15460 82 PVRGFDEYFLNLTVENNRRDPWFIEAKQNSKTSNVDY 118 (123)
Q Consensus 82 ~ip~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~~c~~ 118 (123)
++|+|++|+++++|..+++++|+.++|+..|+ |.+
T Consensus 308 ~~~~F~~~l~~l~~~~~~~~~~~~~~w~~~f~--c~~ 342 (472)
T cd06374 308 EVPSFDDYYLKLRPETNTRNPWFREFWQHRFQ--CRL 342 (472)
T ss_pred CCccHHHHHHhCCcccCCCChHHHHHHHHhcC--CCc
Confidence 99999999999999999999999999999998 664
No 7
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=99.60 E-value=1.4e-14 Score=109.60 Aligned_cols=110 Identities=39% Similarity=0.765 Sum_probs=92.2
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ 82 (123)
+..++.++..++. |+|||+++....+..++..+.+.++.++++||+++.|..............+|++++.++..+
T Consensus 218 ~~~~l~~l~~~~~----a~viil~~~~~~~~~~~~~a~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 293 (452)
T cd06362 218 FDNIIRKLLSKPN----ARVVVLFCREDDIRGLLAAAKRLNAEGHFQWIASDGWGARNSVVEGLEDVAEGAITIELQSAE 293 (452)
T ss_pred HHHHHHHHhhcCC----CeEEEEEcChHHHHHHHHHHHHcCCcCceEEEEeccccccchhhcccccccceEEEEEecccc
Confidence 4556777776677 999999999999999999999888875479999999975433323345678999999999999
Q ss_pred CCChhhhhhhhcCCCCCCChhHHHHHHHhcCCCccC
Q psy15460 83 VRGFDEYFLNLTVENNRRDPWFIEAKQNSKTSNVDY 118 (123)
Q Consensus 83 ip~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~~c~~ 118 (123)
+++|++|++.++|.++++++|+.++|+..|+ |..
T Consensus 294 i~~f~~~l~~l~~~~~~~~~~~~~~w~~~~~--c~~ 327 (452)
T cd06362 294 VPGFDEYFLSLTPENNSRNPWFREFWEQKFN--CKL 327 (452)
T ss_pred cccHHHHhhhCCcCcCCCChHHHHHHHHhcC--CCc
Confidence 9999999999999999999999999999887 543
No 8
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=99.01 E-value=2.6e-09 Score=80.35 Aligned_cols=83 Identities=16% Similarity=0.332 Sum_probs=69.9
Q ss_pred HHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccC-CCccccccceEEEeecCCcCC
Q psy15460 6 CIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVS-DGSEAEVEGTLSLQPQANPVR 84 (123)
Q Consensus 6 ~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~-~~~~~~~~gsL~f~~~~~~ip 84 (123)
.+.+++..++ |+|||+++....+..++.++.+.++ + ++||++++|....... .......+|.+++.++..+++
T Consensus 225 ~~~~~ik~~~----a~vVvv~~~~~~~~~l~~~a~~~g~-~-~~wigs~~w~~~~~~~~~~~~~~~~g~ig~~~~~~~~~ 298 (403)
T cd06361 225 TTEKIIEENK----VNVIVVFARQFHVFLLFNKAIERNI-N-KVWIASDNWSTAKKILTDPNVKKIGKVVGFTFKSGNIS 298 (403)
T ss_pred HHHHHHhcCC----CeEEEEEeChHHHHHHHHHHHHhCC-C-eEEEEECcccCccccccCCcccccceEEEEEecCCccc
Confidence 4556677778 9999999999999999999999998 7 8999999997644333 234467889999999999999
Q ss_pred Chhhhhhhhc
Q psy15460 85 GFDEYFLNLT 94 (123)
Q Consensus 85 ~f~~fl~~l~ 94 (123)
+|.+|++++.
T Consensus 299 ~F~~~~~~~~ 308 (403)
T cd06361 299 SFHQFLKNLL 308 (403)
T ss_pred hHHHHHHHhh
Confidence 9999999974
No 9
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=97.75 E-value=0.00011 Score=53.26 Aligned_cols=77 Identities=14% Similarity=0.302 Sum_probs=61.6
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhcc-CCceEEEeecCccccc-ccCCCccccccceEEEeecCCcCCChhhhhhhhcCC
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNA-TGNFSWVGSDGWSARG-LVSDGSEAEVEGTLSLQPQANPVRGFDEYFLNLTVE 96 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~-~~~kvwI~s~~w~~~~-~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~l~p~ 96 (123)
++|||++++...+..++..+.+.++ .+.++||.++.|.... .........+.|.+++.++....+.+.+|..++++.
T Consensus 180 ~rvvil~~~~~~~~~~l~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 258 (348)
T PF01094_consen 180 ARVVILCSSPEDARQFLEAAYELGMTSGDYVWILTDLDNSSFWQNNEDFREAFQGVLGFTPPPPSSPEFEDFMKKWKES 258 (348)
T ss_dssp TSEEEEESBHHHHHHHHHHHHHTTTSSTTSEEEEETTTTTTHTSTHCHHHCCHTTEEEEEESTTTSHHHHHHHHHHHTT
T ss_pred ceeeeeecccccccccccchhhhhccccceeEEeecccccccccccccccccccceeeeeeecccccchhhhhcccChh
Confidence 8999999999999999999887765 3338999999886543 111234566789999999888899999999998864
No 10
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=97.55 E-value=0.00097 Score=50.22 Aligned_cols=82 Identities=21% Similarity=0.452 Sum_probs=60.3
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCC-CccccccceEEEeecCCcC
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSD-GSEAEVEGTLSLQPQANPV 83 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~-~~~~~~~gsL~f~~~~~~i 83 (123)
..+.++ ..+. ++|||+.+.......+++.+.+.++.+ ++||++..|........ ......++.+++.......
T Consensus 225 ~~l~~i-~~~~----~dvIil~~~~~~~~~il~qa~~~g~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (410)
T cd06363 225 QILKQI-NQTK----VNVIVVFASRQPAEAFFNSVIQQNLTG-KVWIASEAWSLNDELPSLPGIRNIGTVLGVAQQTVTI 298 (410)
T ss_pred HHHHHH-hcCC----CeEEEEEcChHHHHHHHHHHHhcCCCC-CEEEEeCcccccccccCCccceeeccEEEEEeCCCCC
Confidence 445544 3445 899999999999999999999888878 79999999864432221 1223455778887777788
Q ss_pred CChhhhhhh
Q psy15460 84 RGFDEYFLN 92 (123)
Q Consensus 84 p~f~~fl~~ 92 (123)
|++++|++.
T Consensus 299 ~~~~~f~~~ 307 (410)
T cd06363 299 PGFSDFIYS 307 (410)
T ss_pred ccHHHHHHH
Confidence 999999865
No 11
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=97.51 E-value=0.0012 Score=48.08 Aligned_cols=82 Identities=15% Similarity=0.379 Sum_probs=57.4
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeec---CC
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQ---AN 81 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~---~~ 81 (123)
..+.++.. +. ++|||+++.......++..+.+.++.+ +.|++++.|..............+|.++.... ..
T Consensus 208 ~~l~~l~~-~~----~~vvv~~~~~~~~~~~~~~a~~~g~~~-~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 281 (348)
T cd06350 208 RILKKLKS-ST----ARVIVVFGDEDDALRLFCEAYKLGMTG-KYWIISTDWDTSTCLLLFTLDAFQGVLGFSGHAPRSG 281 (348)
T ss_pred HHHHHHHh-CC----CcEEEEEeCcHHHHHHHHHHHHhCCCC-eEEEEEccccCccccccCCcceeeeEEEEEEEeecCC
Confidence 44444443 44 799999999999999999999888866 78889988975421222223445666666543 35
Q ss_pred cCCChhhhhhh
Q psy15460 82 PVRGFDEYFLN 92 (123)
Q Consensus 82 ~ip~f~~fl~~ 92 (123)
+.++|.+|+..
T Consensus 282 ~~~~f~~~~~~ 292 (348)
T cd06350 282 EIPGFKDFLRK 292 (348)
T ss_pred cCCChHHHHHH
Confidence 68899998876
No 12
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=97.07 E-value=0.0029 Score=47.27 Aligned_cols=60 Identities=7% Similarity=-0.002 Sum_probs=48.0
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccC--CceEEEeecCcccccccCCCccccccceEEEeecC
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNAT--GNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA 80 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~--~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~ 80 (123)
.++||+.++...+..++..+.+.++. + +.|+.++.|+..............|..+|.+..
T Consensus 200 ~~~vIl~~~~~~~~~~l~~a~~~gm~~~~-~~wi~~~~l~~~~~~l~~~~~~~~nitgfrl~~ 261 (363)
T cd06381 200 LRRALLLLSPNGAYTFIDASVETNLAIKD-SHWFLINEEISDTEIDELVRYAHGRMTVIRQTF 261 (363)
T ss_pred ceEEEEEcCcHHHHHHHHHHHHcCCCcCc-eEEEEeccccccchhhHHHhhcCccEEEEEEec
Confidence 77999999999999999999999876 6 899999999875544433345567888888653
No 13
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=96.69 E-value=0.012 Score=43.68 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=48.8
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecCcccccccCCCccccccceEEEeecC
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA 80 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~ 80 (123)
++..+.++.+ .+ ++|||+++....+..++..+.+.++.++ ++||.++.|... .....|.+++.+..
T Consensus 202 ~~~~l~~ik~-~~----~~vIvl~~~~~~~~~l~~qa~~~g~~~~~~~wi~t~~~~~~-------~~~~~g~~g~~~~~ 268 (377)
T cd06379 202 VTSLLQEAKE-LT----SRVILLSASEDDAAVIYRNAGMLNMTGEGYVWIVSEQAGAA-------RNAPDGVLGLQLIN 268 (377)
T ss_pred HHHHHHHHhh-cC----CeEEEEEcCHHHHHHHHHHHHHcCCCCCCEEEEEecccccc-------ccCCCceEEEEECC
Confidence 3445555533 45 8999999999999999999998887542 799999998432 12346888888754
No 14
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=96.61 E-value=0.0054 Score=45.81 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=38.1
Q ss_pred HHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecCc
Q psy15460 6 CIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDGW 56 (123)
Q Consensus 6 ~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~w 56 (123)
.+.+.+.... ++|||++++...+..++..+.+.++.++ ++||+++.-
T Consensus 184 ~~l~~lk~~~----arViVl~~s~~~a~~if~~A~~~gm~g~~yvWI~t~~~ 231 (362)
T cd06378 184 RTQRQLKKLE----SQVILLYCSKEEAEYIFRAARSAGLTGPGYVWIVPSLV 231 (362)
T ss_pred HHHHHHHhcC----CCEEEEECCHHHHHHHHHHHHHcCCcCCCeEEEecccc
Confidence 4445555566 9999999999999999999999887653 799999853
No 15
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=96.54 E-value=0.014 Score=43.05 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=44.7
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecCcccccccCCCccccccceEEEeecC
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA 80 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~ 80 (123)
++|||+++.......++..+.+.++.++ ++||+++.|..... ......+|.+++.+..
T Consensus 195 ~~vivl~~~~~~~~~il~~a~~~g~~~~~~~wI~~~~~~~~~~---~~~~~~~G~~g~~~~~ 253 (362)
T cd06367 195 SRVILLYCSKEEAERIFEAAASLGLTGPGYVWIVGELALGSGL---APEGLPVGLLGVGLDT 253 (362)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCCCCCcEEEECcccccccC---CccCCCCeeEEEEecc
Confidence 8999999999999999999988886432 79999999964221 2234567899998764
No 16
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=96.47 E-value=0.014 Score=43.64 Aligned_cols=74 Identities=4% Similarity=0.047 Sum_probs=49.5
Q ss_pred cceEEEEEeCchhHHHHHHHHHHhc--cCCceEEEeecCcccccccCCCccccccceEEEeecCCcCCChhhhhhhhc
Q psy15460 19 LIPGVIVFGSDQEVAGMMRAVRRMN--ATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVRGFDEYFLNLT 94 (123)
Q Consensus 19 ~A~VIVl~~~~~~~~~l~~~~~~~~--~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~l~ 94 (123)
+++|||+.++...+..++..+.+.. ..+ ++||.++ .+..............|.++|.+....-+.+++|...+.
T Consensus 171 ~~rvIVl~~~~~~~~~~L~~a~~~~~~~~g-y~wI~t~-l~~~~~~~~~~~~~~~nitg~r~~~~~~~~~~~~~~~w~ 246 (364)
T cd06390 171 KERLIVVDCESERLNAILNQIIKLEKNGIG-YHYILAN-LGFMDIDLTKFRESGANVTGFQLVNYTDTTVSRIMQQWK 246 (364)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhhccCCc-eEEEecC-CCcccccHHHHhcCCcCceEEEEecCCCHHHHHHHHHHH
Confidence 3899999998888877777664433 456 8999998 222111111123345688999988777777788877753
No 17
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=95.89 E-value=0.04 Score=41.76 Aligned_cols=73 Identities=7% Similarity=0.056 Sum_probs=47.2
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccceEEEeecCCcCCChhhhhhh
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVRGFDEYFLN 92 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~ 92 (123)
++|||++++...+..++.++.+.++.+ +++||.++.-....+........++|..++.++....+.+.++..+
T Consensus 200 ~rviVl~~~~~~~~~ll~~a~~~gm~~~~y~wi~t~~~~~~~dl~~~~~~~~~~v~~~r~~~~~~~~~~~~~~r 273 (400)
T cd06391 200 LRRAILVMNPATAKSFITEVVETNLVAFDCHWIIINEEISDMDVQELVRRSIGRLTIIRQTFPLPQNISQRCFR 273 (400)
T ss_pred ccEEEEECCcHHHHHHHHHHHHcCCCCCCeEEEEeCccccccccchHHhcccceEEEeccCCchHHHHHHHHHH
Confidence 899999999999999999999888643 2799999853322222222223345555566544444555555443
No 18
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=95.75 E-value=0.061 Score=39.35 Aligned_cols=86 Identities=10% Similarity=0.171 Sum_probs=56.9
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCccccc----ccC-CCccccccceEEE
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARG----LVS-DGSEAEVEGTLSL 76 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~----~~~-~~~~~~~~gsL~f 76 (123)
+...+.++.. +. +++||+++.......++..+.+.++.+ ..+||.++.+.... ... ........|.+++
T Consensus 181 ~~~~l~~i~~-~~----~dvvi~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 255 (350)
T cd06366 181 ITDALKKLKE-KD----SRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSSSDCTDEEMLEAMQGVIGV 255 (350)
T ss_pred HHHHHHHHhc-CC----CeEEEEECChHHHHHHHHHHHHcCCcCCCEEEEECcchhhhhccCCCCChHHHHHhhceEEEE
Confidence 3445555443 44 899999999999998999988888743 26899987654321 111 1122446788888
Q ss_pred eecCCc-CCChhhhhhhh
Q psy15460 77 QPQANP-VRGFDEYFLNL 93 (123)
Q Consensus 77 ~~~~~~-ip~f~~fl~~l 93 (123)
.+...+ .|..++|....
T Consensus 256 ~~~~~~~~~~~~~f~~~~ 273 (350)
T cd06366 256 RSYVPNSSMTLQEFTSRW 273 (350)
T ss_pred eecccccCccHHHHHHHH
Confidence 776555 67777777664
No 19
>KOG4440|consensus
Probab=94.98 E-value=0.068 Score=42.80 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=42.6
Q ss_pred CcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecCcccccccCCCccccccceEEEeec
Q psy15460 18 LLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQ 79 (123)
Q Consensus 18 ~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~ 79 (123)
.+|+|+++.++.+++..++..+...+.+|+ +|||.++.-... ...-+|+|++++.
T Consensus 223 ~~~rv~~~~as~dDA~~ifr~Ag~lnmTG~G~VWiV~E~a~~~-------nn~PdG~LGlqL~ 278 (993)
T KOG4440|consen 223 LEARVIILSASEDDAATIFRAAGMLNMTGSGYVWIVGERAISG-------NNLPDGILGLQLI 278 (993)
T ss_pred hhheeEEeecccchHHHHHHhhhhhcccCceEEEEEecccccc-------CCCCCceeeeEee
Confidence 669999999999999999999888876542 799999865322 2235788888764
No 20
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=94.69 E-value=0.3 Score=34.07 Aligned_cols=39 Identities=21% Similarity=0.576 Sum_probs=33.7
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhcc-CCceEEEeecCcccc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNA-TGNFSWVGSDGWSAR 59 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~-~~~kvwI~s~~w~~~ 59 (123)
++|||+++....+..++..+.+.++ .+ ++||.++.|...
T Consensus 196 ~~viv~~~~~~~~~~~l~~a~~~g~~~~-~~~i~~~~~~~~ 235 (298)
T cd06269 196 ARVIVVFSSEEDALRLLEEAVELGMMTG-YHWIITDLWLTS 235 (298)
T ss_pred CcEEEEEechHHHHHHHHHHHHcCCCCC-eEEEEEChhhcc
Confidence 6999999998889999999888887 56 899999999654
No 21
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=94.37 E-value=0.2 Score=37.23 Aligned_cols=75 Identities=13% Similarity=0.248 Sum_probs=51.8
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccC-CceEEEeecCcccccc-----------c-CCCccccccceEEEeecCCcCCCh
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNAT-GNFSWVGSDGWSARGL-----------V-SDGSEAEVEGTLSLQPQANPVRGF 86 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~-~~kvwI~s~~w~~~~~-----------~-~~~~~~~~~gsL~f~~~~~~ip~f 86 (123)
.+|||+++.......++..+.+.++. ++.+||+++.|..... . ........+|.+.+.+.....|.+
T Consensus 195 ~~vii~~~~~~~~~~~l~q~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 274 (389)
T cd06352 195 SRIIIMCGSSEDVRELLLAAHDLGLTSGDYVFILIDLFNYSLPYQNSYPWERGDGDDEKAKEAYDAVLTITLRPPDNPEY 274 (389)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEEehhccccccCCCCCcccCCcccHHHHHHHHhheEEEecCCCCchH
Confidence 48999999888888888888888875 2278999877653311 0 011224467888887766667788
Q ss_pred hhhhhhhc
Q psy15460 87 DEYFLNLT 94 (123)
Q Consensus 87 ~~fl~~l~ 94 (123)
++|.....
T Consensus 275 ~~f~~~~~ 282 (389)
T cd06352 275 EEFSEEVK 282 (389)
T ss_pred HHHHHHHH
Confidence 88877754
No 22
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=93.78 E-value=0.57 Score=35.16 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=36.3
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWS 57 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~ 57 (123)
+..++.++.. + ++|||+++.......++..+.+.++.+ .++||+.+.+.
T Consensus 192 ~~~~l~~ik~--~----~~vIi~~~~~~~~~~i~~qa~~~g~~~~~y~~i~~d~~~ 241 (399)
T cd06384 192 IIEIIQFIKQ--N----GRIVYICGPLETFLEIMLQAQREGLTPGDYVFFYLDVFG 241 (399)
T ss_pred HHHHHHHHhh--c----ccEEEEeCCchHHHHHHHHHHHcCCCCCcEEEEEehhcc
Confidence 3456666642 5 899999999999999999988887643 26898876543
No 23
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=93.30 E-value=0.52 Score=35.21 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=53.1
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccC-CceEEEeecCccccc----cc----C----CCcccc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNAT-GNFSWVGSDGWSARG----LV----S----DGSEAE 69 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~-~~kvwI~s~~w~~~~----~~----~----~~~~~~ 69 (123)
+...++++.. + ++|||+++.......++..+.+.++. ++++||..+..+... .. . ......
T Consensus 191 ~~~~l~~ik~--~----~~vii~~~~~~~~~~~~~qa~~~g~~~~~yv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (396)
T cd06373 191 YKELLRDISK--K----GRVVIMCASPDTVREIMLAAHRLGLTSGEYVFFNIDLFGSSLYGGGPWWWERGDEDDEKAKEA 264 (396)
T ss_pred HHHHHHHHHh--c----CcEEEEecCHHHHHHHHHHHHHcCCCCCcEEEEEEccchhhhccCCCCcCCCCCcccHHHHHH
Confidence 3445555542 3 58999999998888888888888764 337898865432110 00 0 001122
Q ss_pred ccceEEEeecCCcCCChhhhhhhhc
Q psy15460 70 VEGTLSLQPQANPVRGFDEYFLNLT 94 (123)
Q Consensus 70 ~~gsL~f~~~~~~ip~f~~fl~~l~ 94 (123)
.+|.+.+.......|.+++|....+
T Consensus 265 ~~~v~~~~~~~~~~~~~~~F~~~~~ 289 (396)
T cd06373 265 YQALMTITLREPDNPEYKEFSLEVK 289 (396)
T ss_pred HHHheEEecCCCCChHHHHHHHHHH
Confidence 4577777666556677787776654
No 24
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=92.05 E-value=1.5 Score=31.73 Aligned_cols=86 Identities=6% Similarity=0.000 Sum_probs=50.8
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecCcccccccCCCccccccceEEEeecCC
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN 81 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~ 81 (123)
+...+.++.. .+ +++||+++.......++..+.+.++.+. .+|+.+............ .....+..++.+...
T Consensus 170 ~~~~l~~i~~-~~----~d~vv~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~ 243 (327)
T cd06382 170 YRPLLKEIKN-SG----DNRIIIDCSADILIELLKQAQQVGMMSEYYHYIITNLDLHTLDLEDY-RYSGVNITGFRLVDP 243 (327)
T ss_pred HHHHHHHHHh-cC----ceEEEEECCHHHHHHHHHHHHHhCccccceEEEEecCCccccchhhh-ccCceeEEEEEEecC
Confidence 3444555433 45 7999999999999999999988887552 478885543222111111 111124555555554
Q ss_pred cCCChhhhhhhhc
Q psy15460 82 PVRGFDEYFLNLT 94 (123)
Q Consensus 82 ~ip~f~~fl~~l~ 94 (123)
+-|..++|.....
T Consensus 244 ~~~~~~~f~~~~~ 256 (327)
T cd06382 244 DSPEVKEVIRSLE 256 (327)
T ss_pred CchhHHHHHHHHH
Confidence 5566666666544
No 25
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=91.64 E-value=0.72 Score=34.52 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=37.2
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCc-----hhHHHHHHHHHHhccC-CceEEEeecCc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSD-----QEVAGMMRAVRRMNAT-GNFSWVGSDGW 56 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~-----~~~~~l~~~~~~~~~~-~~kvwI~s~~w 56 (123)
++.+++++..+.. ++|||+++.. .....++..+.+.++. ++.+||+++..
T Consensus 176 ~~~~L~~lk~~~~----~~viv~~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~~d~~ 231 (382)
T cd06371 176 AREALKKVRSADR----VRVVIMCMHSVLIGGEEQRLLLETALEMGMTDGRYVFIPYDTL 231 (382)
T ss_pred HHHHHHHHhcCCC----cEEEEEEeeccccCcHHHHHHHHHHHHcCCcCCcEEEEEeccc
Confidence 4567777776666 7999998876 5667788888888865 33699998743
No 26
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=91.59 E-value=1.1 Score=33.62 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=31.0
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccC-CceEEEeecCcc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNAT-GNFSWVGSDGWS 57 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~-~~kvwI~s~~w~ 57 (123)
++|||+++.......++..+.+.++. ++++||+++.|.
T Consensus 203 ~~iii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~~~~~ 241 (405)
T cd06385 203 GRVIYVCCSPDIFRRLMLQFWREGLPSEDYVFFYIDLFG 241 (405)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCCCCcEEEEEeecch
Confidence 69999999999999999888888763 237999987654
No 27
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=91.48 E-value=0.65 Score=34.66 Aligned_cols=35 Identities=11% Similarity=0.275 Sum_probs=29.7
Q ss_pred cceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEee
Q psy15460 19 LIPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGS 53 (123)
Q Consensus 19 ~A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s 53 (123)
.++|||+++.......++..+.+.++.+ +++||.+
T Consensus 196 ~~~vii~~~~~~~~~~i~~~a~~~g~~~~~y~~i~~ 231 (391)
T cd06372 196 VARVIILICSSEDAKAILQAAEKLGLMKGKFVFFLL 231 (391)
T ss_pred cceEEEEEcChHHHHHHHHHHHHcCCCCCCEEEEEe
Confidence 3999999999999999999999888744 3899994
No 28
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C. Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.
Probab=91.36 E-value=0.83 Score=34.61 Aligned_cols=61 Identities=10% Similarity=0.062 Sum_probs=40.2
Q ss_pred CcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCC
Q psy15460 18 LLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN 81 (123)
Q Consensus 18 ~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~ 81 (123)
.++||||+||+...++.+..... ..+..++|.-+.+..+...-......++..|.+.++..
T Consensus 207 ~~sRIiImCG~p~~ir~lm~~~~---~~gDYVf~~IDlF~~sy~~d~~a~~amqsVLvIT~~~p 267 (380)
T cd06369 207 RKSNVIIMCGTPEDIVNLKGDRA---VAEDIVIILIDLFNDVYYENTTSPPYMRNVLVLTLPPR 267 (380)
T ss_pred cCccEEEEeCCHHHHHHHHhcCc---cCCCEEEEEEecccchhccCcchHHHHhceEEEecCCC
Confidence 34899999999999998876522 23448999998875332111123345777888875543
No 29
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=91.14 E-value=2.3 Score=32.07 Aligned_cols=71 Identities=7% Similarity=0.041 Sum_probs=49.4
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccc---eEEEeecCCcCCChhhhhhhhc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEG---TLSLQPQANPVRGFDEYFLNLT 94 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~g---sL~f~~~~~~ip~f~~fl~~l~ 94 (123)
.++||+-++.+.+..++..+.+.++.+ .+.||.+.--.... ...+..+| ..+|.+....-|..++|.....
T Consensus 180 ~r~iIld~s~~~~~~il~~a~e~gM~~~~y~~ilt~ld~~~~----dl~~~~~g~~NItg~rl~~~~~~~~~~f~~~w~ 254 (372)
T cd06387 180 EKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDI----SLERVMHGGANITGFQIVNNENPMVQQFLQRWV 254 (372)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCccccceEEEEecCCcccc----cHHHhccCCcceeEEEEecCCCchHHHHHHHHH
Confidence 799999999999999998888887632 27999996321111 11223344 7888887777777777776653
No 30
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=91.11 E-value=2 Score=30.72 Aligned_cols=73 Identities=4% Similarity=0.040 Sum_probs=45.5
Q ss_pred c-eEEEEEeCchhHHHHHHHHHHhccC-CceEEEeecCcccccccCCCccccccceEEEeecCCcCCChhhhhhhh
Q psy15460 20 I-PGVIVFGSDQEVAGMMRAVRRMNAT-GNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVRGFDEYFLNL 93 (123)
Q Consensus 20 A-~VIVl~~~~~~~~~l~~~~~~~~~~-~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~l 93 (123)
+ +||++++....+..++..+.+.++. ..++||.++.-...... ......-.|.++|.+....-+.+.++....
T Consensus 186 ~~~vil~~~~~~~~~~~l~~a~~~gm~~~~~~~i~~~~~~~~~d~-~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~ 260 (328)
T cd06351 186 SRRIILDCSSEEEAKEILEQAVELGMMGYGYHWILTNLDLSDIDL-EPFQYGPANITGFRLVDPDSPDVSQFLQRW 260 (328)
T ss_pred cceEEEECCcHHHHHHHHHHHHHhccccCCcEEEEecCCccccch-hhhccCCcceEEEEEeCCCchHHHHHHHhh
Confidence 5 7777666657888888888887763 22799998743221111 112233467888887666556666666553
No 31
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=90.23 E-value=2.2 Score=32.02 Aligned_cols=35 Identities=14% Similarity=0.402 Sum_probs=26.3
Q ss_pred ceEEEEEeCc-hhHHHHHHHHHHhccCC-ceEEEeec
Q psy15460 20 IPGVIVFGSD-QEVAGMMRAVRRMNATG-NFSWVGSD 54 (123)
Q Consensus 20 A~VIVl~~~~-~~~~~l~~~~~~~~~~~-~kvwI~s~ 54 (123)
+++||+.+.. ..+..++..+.+.++.+ ..+||.+.
T Consensus 185 ~~rIIi~~s~~~~~~~il~qA~~lgm~~~~y~wilt~ 221 (368)
T cd06383 185 IKNIFILGSTEEIIRYVLDQALAEGFMGRKYAWFLGN 221 (368)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHHcCCcCCceEEEEcC
Confidence 6566666664 88999999998888754 26899886
No 32
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=89.55 E-value=1.9 Score=32.31 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=30.8
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccC-CceEEEeecCc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNAT-GNFSWVGSDGW 56 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~-~~kvwI~s~~w 56 (123)
.+|||++++...+..++..+.+.++. ++++||..+..
T Consensus 195 ~rvii~~~~~~~~~~ll~~A~~~gm~~~~yv~i~~d~~ 232 (387)
T cd06386 195 ERVVIMCAGADTIRSIMLAAHRRGLTSGDYIFFNIELF 232 (387)
T ss_pred CcEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Confidence 49999999999999999998888753 44899999754
No 33
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=89.51 E-value=1.5 Score=30.52 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=50.6
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ 82 (123)
+...++++.. .. +++|+++++......++..+.+.++.++..||+.+.|...... ........|.++..+....
T Consensus 180 ~~~~~~~l~~-~~----~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~ 253 (299)
T cd04509 180 FTSLLQKLKA-AK----PDVIVLCGSGEDAATILKQAAEAGLTGGYPILGITLGLSDVLL-EAGGEAAEGVLTGTPYFPG 253 (299)
T ss_pred HHHHHHHHHh-cC----CCEEEEcccchHHHHHHHHHHHcCCCCCCcEEecccccCHHHH-HHhHHhhcCcEEeeccCCC
Confidence 3455666543 33 6899988887788888888888776543689998887543221 1122446778877765554
Q ss_pred CCChhh
Q psy15460 83 VRGFDE 88 (123)
Q Consensus 83 ip~f~~ 88 (123)
.++...
T Consensus 254 ~~~~~~ 259 (299)
T cd04509 254 DPPPES 259 (299)
T ss_pred CCChHH
Confidence 444433
No 34
>KOG1053|consensus
Probab=88.38 E-value=1.2 Score=37.33 Aligned_cols=48 Identities=13% Similarity=0.315 Sum_probs=38.1
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCc
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGW 56 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w 56 (123)
.....+++.-+ |.||++||+.+.+..++.++.+.+++| +.+||.+..-
T Consensus 221 a~~q~qLkki~----a~VillyC~~eea~~IF~~A~q~Gl~g~~y~Wi~pqlv 269 (1258)
T KOG1053|consen 221 AKLQAQLKKIQ----APVILLYCSREEAERIFEEAEQAGLTGPGYVWIVPQLV 269 (1258)
T ss_pred HHHHHHHHhcC----CcEEEEEecHHHHHHHHHHHHhcCCcCCceEEEeehhc
Confidence 34556666666 999999999999999999999998643 2799997544
No 35
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=84.45 E-value=8.8 Score=27.57 Aligned_cols=35 Identities=6% Similarity=0.156 Sum_probs=28.4
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeec
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSD 54 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~ 54 (123)
+++||+.+.......++..+.+.++.+ ...||.+.
T Consensus 181 ~d~Vi~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~ 216 (324)
T cd06368 181 ERRIILDCSPERLKEFLEQAVEVGMMSEYYHYILTN 216 (324)
T ss_pred CceEEEECCHHHHHHHHHHHHHhccccCCcEEEEcc
Confidence 789999999999999999988888632 26898764
No 36
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=84.28 E-value=6.2 Score=29.68 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=27.7
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccC--CceEEEeecC
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNAT--GNFSWVGSDG 55 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~--~~kvwI~s~~ 55 (123)
++++|+++.......++..+.+.++. ++++||+.+.
T Consensus 198 ~~~~v~~~~~~~~~~~l~qa~~~g~~~~~~y~~i~~~~ 235 (404)
T cd06370 198 TRIYVFIGEANELRQFLMSMLDEGLLESGDYMVLGVDI 235 (404)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEEEch
Confidence 78899988877788888888888764 4357888653
No 37
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=81.18 E-value=11 Score=27.89 Aligned_cols=35 Identities=0% Similarity=0.185 Sum_probs=27.6
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeec
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSD 54 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~ 54 (123)
+++||+.+....+..++..+.+.++.+ +.+||.+.
T Consensus 184 ~~~iil~~~~~~~~~i~~qa~~~gm~~~~y~~i~~~ 219 (382)
T cd06380 184 EKRIVLDCESERLNKILEQIVDVGKNRKGYHYILAN 219 (382)
T ss_pred ceEEEEECCHHHHHHHHHHHHHhhhcccceEEEEcc
Confidence 789999999988989998888877532 26887764
No 38
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=74.18 E-value=13 Score=28.49 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=35.1
Q ss_pred eEEEEEeCchhHHHHHHHHHHhccC-CceEEEeecCcccccccCCCccccccceEE
Q psy15460 21 PGVIVFGSDQEVAGMMRAVRRMNAT-GNFSWVGSDGWSARGLVSDGSEAEVEGTLS 75 (123)
Q Consensus 21 ~VIVl~~~~~~~~~l~~~~~~~~~~-~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~ 75 (123)
++||+-++...+..++..+.+.++. ..++||.++. +.... ......+|+++
T Consensus 201 r~iVv~~s~~~~~~il~qA~~lgM~~~~y~wI~t~~-~~~~~---dl~~~~~g~~~ 252 (400)
T cd06392 201 RRAILLLSPRGAQTFINEAVETNLASKDSHWVFVNE-EISDT---EILELVHSALG 252 (400)
T ss_pred eEEEEEcCcHHHHHHHHHHHHhCcccCCeEEEEecC-Ccccc---cHHHHhccccc
Confidence 7888899999999999988888753 2279999974 33221 12334566665
No 39
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=73.52 E-value=15 Score=26.35 Aligned_cols=82 Identities=12% Similarity=0.238 Sum_probs=46.6
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ 82 (123)
|...|.++.. .. +++|++.+.......++..+.+.++.. .|++++.+..............+|.++..+....
T Consensus 181 ~~~~v~~l~~-~~----pd~v~~~~~~~~~~~~~~~~~~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 253 (312)
T cd06346 181 YSSEVAAAAA-GG----PDALVVIGYPETGSGILRSAYEQGLFD--KFLLTDGMKSDSFLPADGGYILAGSYGTSPGAGG 253 (312)
T ss_pred HHHHHHHHHh-cC----CCEEEEecccchHHHHHHHHHHcCCCC--ceEeeccccChHHHHhhhHHHhCCcEEccCCCCc
Confidence 3445555554 44 799999988878888888888887754 4677665543221111111234566655443222
Q ss_pred CCChhhhhhh
Q psy15460 83 VRGFDEYFLN 92 (123)
Q Consensus 83 ip~f~~fl~~ 92 (123)
|..++|...
T Consensus 254 -~~~~~f~~~ 262 (312)
T cd06346 254 -PGLEAFTSA 262 (312)
T ss_pred -hhHHHHHHH
Confidence 545555443
No 40
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=70.28 E-value=23 Score=26.26 Aligned_cols=36 Identities=6% Similarity=0.126 Sum_probs=28.6
Q ss_pred cceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeec
Q psy15460 19 LIPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSD 54 (123)
Q Consensus 19 ~A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~ 54 (123)
.+++||+-+....+..++..+.+.++.+ ...||.+.
T Consensus 186 ~~~~iVv~~~~~~a~~il~qa~~lGm~~~~y~~i~T~ 222 (333)
T cd06394 186 KTATIIIDANASMSHTILLKASELGMTSAFYKYILTT 222 (333)
T ss_pred CCCEEEEECChHHHHHHHHHHHHcCCCCCceEEEEec
Confidence 3899999999999999998888887532 16788664
No 41
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=69.58 E-value=15 Score=26.87 Aligned_cols=45 Identities=4% Similarity=0.062 Sum_probs=31.8
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEee
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGS 53 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s 53 (123)
|...|+++.. .. +++|++.+.......+++.+.+.+... +.+.+.
T Consensus 188 ~~~~i~~l~~-~~----~d~v~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~ 232 (347)
T cd06340 188 LTSEVLKLKA-AN----PDAILPASYTNDAILLVRTMKEQRVEP-KAVYSV 232 (347)
T ss_pred hHHHHHHHHh-cC----CCEEEEcccchhHHHHHHHHHHcCCCC-cEEEec
Confidence 3455665533 44 799999999888888888888888876 444443
No 42
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=66.71 E-value=50 Score=24.64 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=42.8
Q ss_pred cceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeec-CcccccccCCCccccccceEEEeecCCcCCChhhhhhhhc
Q psy15460 19 LIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSD-GWSARGLVSDGSEAEVEGTLSLQPQANPVRGFDEYFLNLT 94 (123)
Q Consensus 19 ~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~-~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~l~ 94 (123)
..++||+-+....+..++..+.+.++.++ ..||.+. .|.... .... ...-.+..+|......-|..++|.....
T Consensus 176 ~~~~Iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~-l~~~-~~~~~nitg~~~~~~~~~~v~~f~~~~~ 251 (370)
T cd06389 176 KERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGD-LSKI-QFGGANVSGFQIVDYDDPLVSKFIQRWS 251 (370)
T ss_pred cceEEEEECCHHHHHHHHHHHHHhCccccceEEEEccCCccccc-hhhh-ccCCcceEEEEEecCCCchHHHHHHHHH
Confidence 38999999999999999999888886431 5776654 343211 1000 0001123444444334555666665543
No 43
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=65.91 E-value=53 Score=24.47 Aligned_cols=72 Identities=10% Similarity=0.001 Sum_probs=41.7
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccce--EEEeecCCcCCChhhhhhhhc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEGT--LSLQPQANPVRGFDEYFLNLT 94 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~gs--L~f~~~~~~ip~f~~fl~~l~ 94 (123)
+++||+.+....+..++..+.+.++.+ ...|+.+.. +........ ...+|. .++.......+..++|....+
T Consensus 193 ~~~iil~~~~~~~~~il~qa~~~gm~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~it~~~~~~~~~~~~~~f~~~~~ 267 (384)
T cd06393 193 EFRIIFDCSHQMAAQILKQAMAMGMMTEYYHFIFTTL-DLYALDLEP--YRYSGVNLTGFRILNVDNPHVSSIVEKWS 267 (384)
T ss_pred ceEEEEECCHHHHHHHHHHHHHhccccCceEEEEccC-ccccccchh--hhcCcceEEEEEecCCCcHHHHHHHHHHH
Confidence 788999999888888888888887643 145664432 111100000 012222 455555555667777776653
No 44
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=64.84 E-value=25 Score=25.17 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=48.1
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCC-
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN- 81 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~- 81 (123)
+...+.++.. +. +++|++.+.......++..+.+.+... .|++++.|.... .........+|.+...+...
T Consensus 179 ~~~~l~~i~~-~~----~~~vi~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ 250 (334)
T cd06342 179 FSAILTKIKA-AN----PDAVFFGGYYPEAGPLVRQMRQLGLKA--PFMGGDGLCDPE-FIKIAGDAAEGTYATFPGGPL 250 (334)
T ss_pred HHHHHHHHHh-cC----CCEEEEcCcchhHHHHHHHHHHcCCCC--cEEecCccCCHH-HHHHhhHhhCCcEEEecCCCC
Confidence 3445555433 44 789999888878888888888877754 578877654221 11111233566666544321
Q ss_pred -cCCChhhhhhhh
Q psy15460 82 -PVRGFDEYFLNL 93 (123)
Q Consensus 82 -~ip~f~~fl~~l 93 (123)
..|..++|....
T Consensus 251 ~~~~~~~~f~~~~ 263 (334)
T cd06342 251 EKMPAGKAFVARY 263 (334)
T ss_pred CCChHHHHHHHHH
Confidence 345555555544
No 45
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=63.65 E-value=8.3 Score=26.08 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=29.9
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchh--H-HHHHHHHHHhcc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQE--V-AGMMRAVRRMNA 44 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~--~-~~l~~~~~~~~~ 44 (123)
++++|.+.+..|| .|-+|+||.... + -.-+.++.+.++
T Consensus 55 IEKvI~NvisNpn----IRflilcG~Ev~GH~~Gqsl~aLh~NGi 95 (176)
T PF04208_consen 55 IEKVIANVISNPN----IRFLILCGSEVKGHLTGQSLLALHENGI 95 (176)
T ss_pred HHHHHHHHhcCCC----ceEEEEecCccCCCcchHHHHHHHHcCC
Confidence 7899999999999 999999998653 2 234556676766
No 46
>PRK14053 methyltransferase; Provisional
Probab=62.46 E-value=9.3 Score=26.14 Aligned_cols=48 Identities=27% Similarity=0.424 Sum_probs=33.4
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCch--hHH-HHHHHHHHhccC-CceEEEeecC
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQ--EVA-GMMRAVRRMNAT-GNFSWVGSDG 55 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~--~~~-~l~~~~~~~~~~-~~kvwI~s~~ 55 (123)
++|+|.+.+..|| .|-+|+||... ++. .-+.++.+.++. +.+ -|++..
T Consensus 52 IEKvI~NvisNpN----IRflilcG~Ev~GHltGqsL~aL~~NGide~gr-IiGa~G 103 (194)
T PRK14053 52 VEKIIVNVISNSN----IRYVLLCGGESRGHLAGHSLLAIHANGIDEKGR-IVGSEG 103 (194)
T ss_pred HHHHHHHhhcCCC----ceEEEEecCccCCccccHHHHHHHHcCCCCCCC-CccCCC
Confidence 7899999999999 99999999865 222 234556666663 213 455543
No 47
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=60.90 E-value=60 Score=24.31 Aligned_cols=69 Identities=6% Similarity=0.082 Sum_probs=42.0
Q ss_pred cceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeec-CcccccccCCCccccccc---eEEEeecCCcCCChhhhhhh
Q psy15460 19 LIPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSD-GWSARGLVSDGSEAEVEG---TLSLQPQANPVRGFDEYFLN 92 (123)
Q Consensus 19 ~A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~-~w~~~~~~~~~~~~~~~g---sL~f~~~~~~ip~f~~fl~~ 92 (123)
..++||+-+....+..++..+.+.++.+ ...||.+. .|.... .....+| ..+|.+....-|..++|+..
T Consensus 178 ~~~~iil~~~~~~~~~il~qa~~~gm~~~~y~~il~~~~~~~~~-----l~~~~~g~~nitg~~~~~~~~~~v~~~~~~ 251 (371)
T cd06388 178 QEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDIS-----LERFMHGGANVTGFQLVDFNTPMVTKLMQR 251 (371)
T ss_pred ccEEEEEECCHHHHHHHHHHHHhcCccccceEEEEccCcccccc-----HHHHhccCCceEEEEeecCCChhHHHHHHH
Confidence 4799999999999999999888887643 16787764 232211 1111123 45555544344666665444
No 48
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=60.40 E-value=41 Score=22.41 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=27.4
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccC-CceEEEeecCccc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNAT-GNFSWVGSDGWSA 58 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~-~~kvwI~s~~w~~ 58 (123)
+++|+++++ .....++..+.+.+.. ++..|++.+.+..
T Consensus 183 ~~~i~~~~~-~~a~~~~~~~~~~g~~~~~~~ii~~~~~~~ 221 (269)
T cd01391 183 PDAIFACND-EMAAGALKAAREAGLTPGDISIIGFDGSPA 221 (269)
T ss_pred CCEEEEcCc-hHHHHHHHHHHHcCCCCCCCEEEecccccc
Confidence 788888877 6777888888877764 3256777776643
No 49
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=59.57 E-value=11 Score=26.60 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=33.6
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCch--hHH-HHHHHHHHhccCCceEEEeecC
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQ--EVA-GMMRAVRRMNATGNFSWVGSDG 55 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~--~~~-~l~~~~~~~~~~~~kvwI~s~~ 55 (123)
++|+|.+.+..|| .|-+|+||... ++. .-+..+.+.++..+.=-|++..
T Consensus 59 IEKvI~NvisNpN----IRflilcG~Ev~GH~tGqsl~aL~~NGvd~~grIiGa~G 110 (225)
T PRK00964 59 IEKVIANVISNPN----IRFLILCGSEVQGHITGQSLKALHENGVDDDGRIIGAKG 110 (225)
T ss_pred HHHHHHHHhcCCC----ceEEEEecCccCCccccHHHHHHHHcCCCCCCCCccCCC
Confidence 7899999999999 99999999864 332 2355666666621122455543
No 50
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=59.08 E-value=11 Score=26.57 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=33.5
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCch--hHH-HHHHHHHHhccC-CceEEEeecC
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQ--EVA-GMMRAVRRMNAT-GNFSWVGSDG 55 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~--~~~-~l~~~~~~~~~~-~~kvwI~s~~ 55 (123)
++|+|.+.+..|| .|-+|+||... ++. .-+..+.+.++. +.+ -|++..
T Consensus 59 IEKvIaNvisNpN----IRflilcG~Ev~GHltGqsL~aLh~NGi~e~gr-IiGa~G 110 (238)
T TIGR01111 59 IEKVVANIISNPN----IRFLILCGSEVQGHITGQSFKALHENGVDDDGR-IIGALG 110 (238)
T ss_pred HHHHHHHHhcCCC----ceEEEEecCcccCccccHHHHHHHHcCCCCCCc-EecCCC
Confidence 7899999999999 99999999865 222 234556666664 213 455543
No 51
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=55.54 E-value=39 Score=24.41 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=33.0
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeec
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSD 54 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~ 54 (123)
|+..|.++.. .. +++|++.+.......++..+.+.++.. ++...+.
T Consensus 185 ~~~~v~~l~~-~~----~d~i~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 230 (345)
T cd06338 185 LSPLISKAKA-AG----PDAVVVAGHFPDAVLLVRQMKELGYNP-KALYMTV 230 (345)
T ss_pred hHHHHHHHHh-cC----CCEEEECCcchhHHHHHHHHHHcCCCC-CEEEEec
Confidence 4556666644 45 799999999888888888888888776 4443333
No 52
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=55.29 E-value=37 Score=24.24 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=42.3
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEee
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQP 78 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~ 78 (123)
++..+.++.. .. +++|++.+.......+...+.+.+.. ..|++++.|..... .........|.....+
T Consensus 180 ~~~~~~~~~~-~~----~d~i~~~~~~~~~~~~~~~~~~~g~~--~~i~~~~~~~~~~~-~~~~~~~~~g~~~~~~ 247 (334)
T cd06347 180 FSAQLTKIKA-KN----PDVIFLPGYYTEVGLIAKQARELGIK--VPILGGDGWDSPKL-EEAGGAAAEGVYFTTH 247 (334)
T ss_pred HHHHHHHHHh-cC----CCEEEEcCchhhHHHHHHHHHHcCCC--CcEEecccccCHHH-HHHHHHHhCCcEEecc
Confidence 3455666544 34 78999999888888788777777664 46888888864322 1111233455555443
No 53
>PF05339 DUF739: Protein of unknown function (DUF739); InterPro: IPR008003 This entry is represented by Bacteriophage bIL285, Orf5. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several bacteriophage proteins. Three of the proteins in this family have been labelled putative cro repressor proteins.; PDB: 2PH7_A.
Probab=50.55 E-value=15 Score=23.87 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=23.7
Q ss_pred eEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcc
Q psy15460 21 PGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWS 57 (123)
Q Consensus 21 ~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~ 57 (123)
+||+++++......++.-..+....|+++|+......
T Consensus 69 ~Vv~vvpte~~~~pfm~ff~~~k~~~~~iWv~de~~k 105 (138)
T PF05339_consen 69 SVVVVVPTEKNPAPFMNFFREHKINGKKIWVADEIEK 105 (138)
T ss_dssp SSEEEEE--SSSHHHHHHHHHHHHHT-EEEEEETTTT
T ss_pred ceEEEecccccccHHHHHHHHhcccccceeecchHhh
Confidence 5678888877766665555555666668999987664
No 54
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=50.20 E-value=52 Score=22.59 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=40.9
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEee
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQP 78 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~ 78 (123)
...+.+++.. . +++|++.++......++..+.+.+. + ..|++.+.|...... ........|.+...+
T Consensus 180 ~~~~~~l~~~-~----~~~vi~~~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~ 246 (298)
T cd06268 180 SPLIAKLKAA-G----PDAVFLAGYGGDAALFLKQAREAGL-K-VPIVGGDGAAAPALL-ELAGDAAEGVLGTTP 246 (298)
T ss_pred HHHHHHHHhc-C----CCEEEEccccchHHHHHHHHHHcCC-C-CcEEecCccCCHHHH-HhhhHhhCCcEEecc
Confidence 3445555442 4 6888888887777788888887776 3 578888877543221 111233456666554
No 55
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=47.50 E-value=62 Score=23.42 Aligned_cols=49 Identities=6% Similarity=-0.082 Sum_probs=33.5
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGW 56 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w 56 (123)
++..|.+++. .+ +++|++++.......++..+.+.++.++..|+++...
T Consensus 184 ~~~~v~~i~~-~~----~d~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 232 (346)
T cd06330 184 YGSEITALLA-AK----PDAIFSSLWGGDLVTFVRQANARGLFDGTTVVLTLTG 232 (346)
T ss_pred cHHHHHHHHh-cC----CCEEEEecccccHHHHHHHHHhcCcccCceEEeeccc
Confidence 4566666654 44 6888888877777788888888776432467766543
No 56
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=47.08 E-value=17 Score=22.13 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=19.2
Q ss_pred CcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecC
Q psy15460 18 LLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDG 55 (123)
Q Consensus 18 ~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~ 55 (123)
..|+.||+||+.-.-. ..+.|||+||+-..
T Consensus 39 ~dAeLviV~G~sipnd--------~~l~GKkv~i~d~~ 68 (103)
T COG3925 39 NDAELVIVFGSSIPND--------SALNGKKVWIGDIE 68 (103)
T ss_pred CcccEEEEeccccCCC--------ccccCceEEEecHH
Confidence 4688899999852110 12567789988643
No 57
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=44.14 E-value=1.2e+02 Score=21.86 Aligned_cols=78 Identities=8% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCcCC
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVR 84 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip 84 (123)
..|.+++. .. +++|++.+....+..+...+...+. + ..++++..+..... .........|.....+....-|
T Consensus 182 ~~v~~i~~-~~----~d~v~~~~~~~~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~~~ 253 (332)
T cd06344 182 TAVSQAIN-NG----ATVLVLFPDTDTLDKALEVAKANKG-R-LTLLGGDSLYTPDT-LLDGGKDLEGLVLAVPWHPLAS 253 (332)
T ss_pred HHHHHHHh-cC----CCEEEEeCChhHHHHHHHHHHhcCC-C-ceEEecccccCHHH-HHhchhhhcCeEEEEecccccc
Confidence 34566555 35 7899988877666666666555443 3 45667666543321 1111123456666555433333
Q ss_pred Chhhhh
Q psy15460 85 GFDEYF 90 (123)
Q Consensus 85 ~f~~fl 90 (123)
.-++|.
T Consensus 254 ~~~~f~ 259 (332)
T cd06344 254 PNSPFA 259 (332)
T ss_pred cchHHH
Confidence 334444
No 58
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=42.43 E-value=61 Score=18.71 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=21.6
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEee
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGS 53 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s 53 (123)
++||+++..+..+..+...+ .....+ ++.|..
T Consensus 62 advvilav~p~~~~~v~~~i-~~~~~~-~~vis~ 93 (96)
T PF03807_consen 62 ADVVILAVKPQQLPEVLSEI-PHLLKG-KLVISI 93 (96)
T ss_dssp TSEEEE-S-GGGHHHHHHHH-HHHHTT-SEEEEE
T ss_pred CCEEEEEECHHHHHHHHHHH-hhccCC-CEEEEe
Confidence 78999999988888888777 444556 566543
No 59
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=41.36 E-value=97 Score=22.05 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=45.2
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCC--
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN-- 81 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~-- 81 (123)
...+.++. .+. +++|+++........++..+.+.++.++..++++..|.... ..........|.+...+...
T Consensus 176 ~~~i~~l~-~~~----~d~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~ 249 (333)
T cd06332 176 SAELAQIR-AAK----PDAVFVFLPGGMAVNFVKQYDQAGLKKKIPLYGPGFLTDQD-TLPAQGDAAVGVLTALHWAPDL 249 (333)
T ss_pred HHHHHHHH-hcC----CCEEEEecccchHHHHHHHHHHcCcccCCceeccCCCCCHH-HHHhhchhhcCeeeeeccCCCC
Confidence 34566643 344 78898887766777888888888875423577766554321 11111233456665443322
Q ss_pred cCCChhhhhhh
Q psy15460 82 PVRGFDEYFLN 92 (123)
Q Consensus 82 ~ip~f~~fl~~ 92 (123)
.-|..++|...
T Consensus 250 ~~~~~~~f~~~ 260 (333)
T cd06332 250 DNPANKRFVAA 260 (333)
T ss_pred CCHHHHHHHHH
Confidence 22444444443
No 60
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=37.04 E-value=1.4e+02 Score=21.48 Aligned_cols=84 Identities=7% Similarity=-0.002 Sum_probs=44.8
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecC--
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA-- 80 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~-- 80 (123)
|...|.++. .+. +++|++.+.......+...+...++.++..++++..+... ...........|.+......
T Consensus 175 ~~~~i~~l~-~~~----pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~~~g~~~~g~~~~~~~~~~ 248 (333)
T cd06359 175 FSAELAQIR-AAK----PDAVFVFLPGGMGVNFVKQYRQAGLKKDIPLYSPGFSDEE-DTLPAVGDAALGLYNTAQWAPD 248 (333)
T ss_pred hHHHHHHHH-hCC----CCEEEEEccCccHHHHHHHHHHcCcccCCeeeccCcccCH-HHHHhcchhhcCeeeccccCCC
Confidence 444555543 355 7999988777667777888888877442346655544321 11111112345655544322
Q ss_pred CcCCChhhhhhh
Q psy15460 81 NPVRGFDEYFLN 92 (123)
Q Consensus 81 ~~ip~f~~fl~~ 92 (123)
..-|..++|...
T Consensus 249 ~~~~~~~~f~~~ 260 (333)
T cd06359 249 LDNPANKKFVAD 260 (333)
T ss_pred CCCHHHHHHHHH
Confidence 133555555544
No 61
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=36.77 E-value=1.1e+02 Score=21.79 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=33.2
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGW 56 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w 56 (123)
|...|.++.+ .. +.+|++.+.......+...+...++.++..+++++.+
T Consensus 178 ~~~~v~~~~~-~~----pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 226 (336)
T cd06360 178 FASYLAQIPD-DV----PDAVFVFFAGGDAIKFVKQYDAAGLKAKIPLIGSGFL 226 (336)
T ss_pred hHHHHHHHHh-cC----CCEEEEecccccHHHHHHHHHHcCCccCCeEEecccc
Confidence 4556666554 34 6888888777777888888888887552356666544
No 62
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=35.34 E-value=1.5e+02 Score=21.22 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=33.6
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeec
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSD 54 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~ 54 (123)
++..+.++.. .+ +.+|++.+.......++..+.+.+...+.+++...
T Consensus 179 ~~~~~~~l~~-~~----~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (343)
T PF13458_consen 179 FSALVQQLKS-AG----PDVVVLAGDPADAAAFLRQLRQLGLKPPRIPLFGT 225 (343)
T ss_dssp HHHHHHHHHH-TT----TSEEEEESTHHHHHHHHHHHHHTTGCSCTEEEEEG
T ss_pred chHHHHHHhh-cC----CCEEEEeccchhHHHHHHHHHhhccccccceeecc
Confidence 3445666554 45 78999999998899999998888776523666653
No 63
>PRK07742 phosphate butyryltransferase; Validated
Probab=35.03 E-value=1.3e+02 Score=22.01 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=30.3
Q ss_pred CChhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeec
Q psy15460 1 MPIDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSD 54 (123)
Q Consensus 1 ~~~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~ 54 (123)
|+|+.++.+...... .+|++..+....+..-...+.+.+... -+.++..
T Consensus 1 ~~~~~l~~~~~~~~~----~ri~~~~~~d~~vl~Aa~~a~~e~~~~-~iLvG~~ 49 (299)
T PRK07742 1 MKLEHLIDQAAGQPK----KTVAVAVAEDEEVIEAVAKAIELQLAR-FRLYGNQ 49 (299)
T ss_pred CCHHHHHHHHhcCCC----CeEEEeCCCCHHHHHHHHHHHHcCCce-EEEECCH
Confidence 788999888775555 678887877655433333344444444 5666654
No 64
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=33.93 E-value=13 Score=21.87 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=16.3
Q ss_pred hhhhhhhhcCCCCCCChhHHHHHHH
Q psy15460 86 FDEYFLNLTVENNRRDPWFIEAKQN 110 (123)
Q Consensus 86 f~~fl~~l~p~~~~~~~~~~~~w~~ 110 (123)
.-+||..--.+++++..+++++|+.
T Consensus 38 iGdyLA~~vdP~N~EerlLkELW~v 62 (81)
T PF11588_consen 38 IGDYLAKNVDPKNPEERLLKELWDV 62 (81)
T ss_dssp HHHHHHT-----SHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 4567877777788899999999973
No 65
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.72 E-value=1.8e+02 Score=21.11 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=27.7
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCch-hHHHHHHHHHHhccCC
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQ-EVAGMMRAVRRMNATG 46 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~-~~~~l~~~~~~~~~~~ 46 (123)
..+.++. .+. +++|++++... ....++..+.+.++.+
T Consensus 184 ~~i~~i~-~~~----~d~v~~~~~~~~~~~~~~~~~~~~g~~~ 221 (347)
T cd06336 184 PIVTKLL-AEK----PDVIFLGGPSPAPAALVIKQARELGFKG 221 (347)
T ss_pred HHHHHHH-hcC----CCEEEEcCCCchHHHHHHHHHHHcCCCc
Confidence 3445544 344 89999998877 8888889888888766
No 66
>KOG3045|consensus
Probab=32.65 E-value=96 Score=22.89 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=26.3
Q ss_pred CcceEEEEEeCch--hHHHHHHHHHHhc-cCCceEEEeecC
Q psy15460 18 LLIPGVIVFGSDQ--EVAGMMRAVRRMN-ATGNFSWVGSDG 55 (123)
Q Consensus 18 ~~A~VIVl~~~~~--~~~~l~~~~~~~~-~~~~kvwI~s~~ 55 (123)
.++.|+|.|.+.. ++..++.++.+-. +.| -+||+-..
T Consensus 227 ~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG-~l~IAEv~ 266 (325)
T KOG3045|consen 227 ESVDVAVFCLSLMGTNLADFIKEANRILKPGG-LLYIAEVK 266 (325)
T ss_pred CcccEEEeeHhhhcccHHHHHHHHHHHhccCc-eEEEEehh
Confidence 3488998888743 5677788887765 455 78988754
No 67
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=32.06 E-value=1.3e+02 Score=21.60 Aligned_cols=44 Identities=2% Similarity=0.070 Sum_probs=31.5
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEe
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVG 52 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~ 52 (123)
++..|.++.+ .. +++|++.+.......++.++.+.++.+ ++++.
T Consensus 179 ~~~~v~~l~~-~~----~d~v~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 222 (334)
T cd06327 179 FSSYLLQAQA-SG----ADVLVLANAGADTVNAIKQAAEFGLTK-GQKLA 222 (334)
T ss_pred HHHHHHHHHh-CC----CCEEEEeccchhHHHHHHHHHHhCCcc-CCcEE
Confidence 4556666644 44 799999998888888888888888764 34443
No 68
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=30.43 E-value=1.4e+02 Score=18.54 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=25.3
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWS 57 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~ 57 (123)
+.|||-|+.+..+......+.+.+. .+-+++..|.
T Consensus 68 ~DVvIDfT~p~~~~~~~~~~~~~g~---~~ViGTTG~~ 102 (124)
T PF01113_consen 68 ADVVIDFTNPDAVYDNLEYALKHGV---PLVIGTTGFS 102 (124)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHHT----EEEEE-SSSH
T ss_pred CCEEEEcCChHHhHHHHHHHHhCCC---CEEEECCCCC
Confidence 7899999998888888877776643 5788888885
No 69
>COG4063 MtrA Tetrahydromethanopterin S-methyltransferase, subunit A [Coenzyme metabolism]
Probab=29.87 E-value=61 Score=22.52 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=28.3
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchh--H-HHHHHHHHHhccC
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQE--V-AGMMRAVRRMNAT 45 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~--~-~~l~~~~~~~~~~ 45 (123)
+.|.|-+.+..|| .|-.|+||.... + -+-+.++...++.
T Consensus 58 IEKvianvIsNpN----iRflvvcGaEv~GHitGq~~~alh~NGvd 99 (238)
T COG4063 58 IEKVIANVISNPN----IRFLVVCGAEVQGHITGQSMKALHANGVD 99 (238)
T ss_pred HHHHHHHhccCCC----ceEEEEecchhcceehhHHHHHHHhcCCC
Confidence 6799999999999 999999998653 2 2234445555553
No 70
>PRK11890 phosphate acetyltransferase; Provisional
Probab=29.80 E-value=1.6e+02 Score=22.00 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=34.8
Q ss_pred ChhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEee
Q psy15460 2 PIDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGS 53 (123)
Q Consensus 2 ~~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s 53 (123)
+|+.++........ -+|+|..+....+..-...+.+.++.. -++|+-
T Consensus 9 ~~~~l~~~~~~~~~----~~vava~a~D~~vl~Aa~~a~~~gl~~-piLvG~ 55 (312)
T PRK11890 9 KYERLIARARTLPP----LPTAVAHPCDESSLRGAVEAAQLGLIT-PILVGP 55 (312)
T ss_pred CHHHHHHHHhcCCC----ceEEEECCCCHHHHHHHHHHHHcCCEE-EEEECC
Confidence 58888888887777 789999998776666666666677665 577664
No 71
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.65 E-value=42 Score=14.51 Aligned_cols=9 Identities=33% Similarity=0.889 Sum_probs=6.6
Q ss_pred CCceEEEeec
Q psy15460 45 TGNFSWVGSD 54 (123)
Q Consensus 45 ~~~kvwI~s~ 54 (123)
.| .+||++.
T Consensus 15 ~G-~lWigT~ 23 (24)
T PF07494_consen 15 DG-NLWIGTY 23 (24)
T ss_dssp TS-CEEEEET
T ss_pred Cc-CEEEEeC
Confidence 35 7999884
No 72
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.95 E-value=1.2e+02 Score=18.18 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=22.9
Q ss_pred cceEEEEEeCchhHHHHHHHHHHhccCC
Q psy15460 19 LIPGVIVFGSDQEVAGMMRAVRRMNATG 46 (123)
Q Consensus 19 ~A~VIVl~~~~~~~~~l~~~~~~~~~~~ 46 (123)
..+-+|+|++...+..++..+.+.....
T Consensus 34 k~kY~vlYvn~~~ve~~~~kl~~~kfVK 61 (90)
T COG4471 34 KSKYVVLYVNEQDVEQIVEKLSRLKFVK 61 (90)
T ss_pred ceeEEEEEECHHHHHHHHHHHhhceeee
Confidence 4678999999999999988888776555
No 73
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=27.87 E-value=2.4e+02 Score=20.49 Aligned_cols=46 Identities=11% Similarity=0.021 Sum_probs=32.4
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCc
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGW 56 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w 56 (123)
...+.++.. .. +++|++.+.......++..+.+.++.. + ++....+
T Consensus 189 ~~~v~~i~~-~~----~d~v~~~~~~~~~~~~~~~~~~~g~~~-~-~~~~~~~ 234 (362)
T cd06343 189 DSQVAKLKA-AG----ADVVVLATTPKFAAQAIRKAAELGWKP-T-FLLSSVS 234 (362)
T ss_pred HHHHHHHHh-cC----CCEEEEEcCcHHHHHHHHHHHHcCCCc-e-EEEEecc
Confidence 344555543 34 799999999888888899998888776 4 4555544
No 74
>KOG0073|consensus
Probab=26.59 E-value=1.1e+02 Score=20.95 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=28.1
Q ss_pred cccccceEEEeecCCcCCChhhhhhhhcCCCCCCChhHHHHHHHhcC
Q psy15460 67 EAEVEGTLSLQPQANPVRGFDEYFLNLTVENNRRDPWFIEAKQNSKT 113 (123)
Q Consensus 67 ~~~~~gsL~f~~~~~~ip~f~~fl~~l~p~~~~~~~~~~~~w~~~f~ 113 (123)
.+..++.++|..+..+.++++ ++.-...++.-+++||.+.|.
T Consensus 41 ~~~i~pt~gf~Iktl~~~~~~-----L~iwDvGGq~~lr~~W~nYfe 82 (185)
T KOG0073|consen 41 TDTISPTLGFQIKTLEYKGYT-----LNIWDVGGQKTLRSYWKNYFE 82 (185)
T ss_pred ccccCCccceeeEEEEecceE-----EEEEEcCCcchhHHHHHHhhh
Confidence 345677888888877777763 333333456667889988775
No 75
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=24.78 E-value=58 Score=22.33 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=12.0
Q ss_pred CCCcceEEEEEeCch
Q psy15460 16 LLLLIPGVIVFGSDQ 30 (123)
Q Consensus 16 ~~~~A~VIVl~~~~~ 30 (123)
++-+.||||++|+..
T Consensus 46 NSQssR~ViL~gd~h 60 (200)
T COG3560 46 NSQSSRVVILFGDEH 60 (200)
T ss_pred ccCCceEEEEeccch
Confidence 456689999999865
No 76
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=24.37 E-value=2.2e+02 Score=21.86 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=34.3
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWS 57 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~ 57 (123)
++.-+++.+..-+ .+.||+|++......+-..+...+-. .+|+..++..
T Consensus 69 ~~~~~r~f~~~hs----i~aivlfgd~R~yh~iA~~va~k~~i--~~wvfEegyl 117 (403)
T COG3562 69 FPTFLRKFIAQHS----IDAIVLFGDTRLYHRIAKTVAIKGGI--SFWVFEEGYL 117 (403)
T ss_pred HHHHHHHHHHhcc----CCceEEeccchHHHHHHHHHHHhcCc--eEEEEecccc
Confidence 4556677777777 89999999988766665554444433 4899888754
No 77
>PHA00006 D external scaffolding protein
Probab=23.43 E-value=52 Score=20.82 Aligned_cols=31 Identities=39% Similarity=0.481 Sum_probs=16.7
Q ss_pred cCCceEEEeecCcccccccCCCccccccceEEEee
Q psy15460 44 ATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQP 78 (123)
Q Consensus 44 ~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~ 78 (123)
+++.|+||+++---... -......|.|-|.-
T Consensus 36 lt~dkvwiatdrsrarr----~veacvygtldfvg 66 (151)
T PHA00006 36 LTGDKVWIATDRSRARR----CVEACVYGTLDFVG 66 (151)
T ss_pred hccceeEEeechHHHHH----HHHHHHhccccccc
Confidence 34458999997431100 01234567777753
No 78
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.61 E-value=2.5e+02 Score=20.24 Aligned_cols=46 Identities=17% Similarity=0.378 Sum_probs=31.8
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCc
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGW 56 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w 56 (123)
...|.++. .+. +++|++.+.......++..+.+.+... + ++++..+
T Consensus 182 ~~~v~~i~-~~~----~d~vi~~~~~~~~~~~~~~~~~~g~~~-~-~~~~~~~ 227 (344)
T cd06348 182 QAQITAVL-NSK----PDLIVISALAADGGNLVRQLRELGYNG-L-IVGGNGF 227 (344)
T ss_pred HHHHHHHH-hcC----CCEEEECCcchhHHHHHHHHHHcCCCC-c-eeccccc
Confidence 34555553 334 799999998888888888888888765 3 4555444
No 79
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.45 E-value=1.8e+02 Score=17.91 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=24.8
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGW 56 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w 56 (123)
.++++++........++.++...+.. .+|+.+..+
T Consensus 56 iDlavv~~~~~~~~~~v~~~~~~g~~--~v~~~~g~~ 90 (116)
T PF13380_consen 56 IDLAVVCVPPDKVPEIVDEAAALGVK--AVWLQPGAE 90 (116)
T ss_dssp -SEEEE-S-HHHHHHHHHHHHHHT-S--EEEE-TTS-
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCC--EEEEEcchH
Confidence 89999999999999999998877744 599988744
No 80
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=21.93 E-value=1.4e+02 Score=22.85 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=24.2
Q ss_pred Cc-ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeec
Q psy15460 18 LL-IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSD 54 (123)
Q Consensus 18 ~~-A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~ 54 (123)
+. +++||+.|+.+.+..++..+. .+ ..||.+.
T Consensus 209 ~~~~~~ill~cs~e~~~~il~~~~----~~-y~wIv~~ 241 (382)
T cd06377 209 PPGPAVVLFGCDVARARRVLELTP----PG-PHWILGD 241 (382)
T ss_pred ccCceEEEEECCHHHHHHHHHhhc----cc-eEEEEcC
Confidence 44 789999999887777765543 34 7999987
No 81
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=20.04 E-value=1.6e+02 Score=20.75 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=22.6
Q ss_pred CcceEEEEEeCch--hHHHHHHHHHHhc-cCCceEEEeecC
Q psy15460 18 LLIPGVIVFGSDQ--EVAGMMRAVRRMN-ATGNFSWVGSDG 55 (123)
Q Consensus 18 ~~A~VIVl~~~~~--~~~~l~~~~~~~~-~~~~kvwI~s~~ 55 (123)
.++.|+|.|.+.. +...++.++.|-. ..| ..||+-..
T Consensus 121 ~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G-~L~IAEV~ 160 (219)
T PF05148_consen 121 ESVDVAVFCLSLMGTNWPDFIREANRVLKPGG-ILKIAEVK 160 (219)
T ss_dssp T-EEEEEEES---SS-HHHHHHHHHHHEEEEE-EEEEEEEG
T ss_pred CceeEEEEEhhhhCCCcHHHHHHHHheeccCc-EEEEEEec
Confidence 3488888888743 4566777777765 455 78887643
Done!