Query psy15460
Match_columns 123
No_of_seqs 127 out of 1014
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 21:40:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mq4_A Mglur7, metabotropic gl 99.8 9.7E-20 3.3E-24 137.5 5.5 108 3-114 235-342 (481)
2 3sm9_A Mglur3, metabotropic gl 99.8 6.7E-19 2.3E-23 133.0 9.8 105 4-114 232-336 (479)
3 3ks9_A Mglur1, metabotropic gl 99.8 9.8E-19 3.4E-23 132.6 9.5 110 3-118 243-353 (496)
4 2e4u_A Metabotropic glutamate 99.7 9.2E-16 3.1E-20 117.5 11.5 106 3-114 232-337 (555)
5 1dp4_A Atrial natriuretic pept 98.0 1.3E-05 4.3E-10 59.0 5.8 97 4-113 197-299 (435)
6 1jdp_A NPR-C, atrial natriuret 97.7 3.3E-05 1.1E-09 57.0 3.8 87 3-95 201-298 (441)
7 3qel_B Glutamate [NMDA] recept 97.4 0.00017 5.7E-09 52.5 5.0 71 4-80 183-254 (364)
8 3qek_A NMDA glutamate receptor 97.2 0.00092 3.2E-08 48.3 6.5 63 20-86 216-279 (384)
9 3o21_A Glutamate receptor 3; p 96.9 0.0026 8.9E-08 46.3 6.7 75 20-95 186-261 (389)
10 3om0_A Glutamate receptor, ion 96.5 0.011 3.9E-07 42.7 7.5 84 4-93 181-265 (393)
11 3kg2_A Glutamate receptor 2; I 96.4 0.013 4.6E-07 46.2 8.2 75 20-95 180-255 (823)
12 4f11_A Gamma-aminobutyric acid 96.0 0.017 5.8E-07 42.2 6.4 77 5-86 197-289 (433)
13 3hsy_A Glutamate receptor 2; l 96.0 0.021 7.2E-07 41.1 6.7 75 19-94 179-254 (376)
14 4gpa_A Glutamate receptor 4; P 95.5 0.028 9.7E-07 40.0 5.9 74 20-94 185-259 (389)
15 3saj_A Glutamate receptor 1; r 95.5 0.027 9.1E-07 40.6 5.7 75 18-93 181-256 (384)
16 3h6g_A Glutamate receptor, ion 86.3 4.4 0.00015 28.8 8.0 81 5-93 182-265 (395)
17 1usg_A Leucine-specific bindin 78.9 6.3 0.00021 27.2 6.3 81 4-92 183-264 (346)
18 4eyg_A Twin-arginine transloca 78.0 3.7 0.00013 28.7 4.9 83 5-93 185-270 (368)
19 3i45_A Twin-arginine transloca 74.0 4.6 0.00016 28.6 4.5 73 20-93 200-274 (387)
20 4evq_A Putative ABC transporte 65.3 13 0.00044 25.9 5.2 70 20-93 207-278 (375)
21 1pea_A Amidase operon; gene re 64.4 9.8 0.00033 26.9 4.5 83 5-93 188-272 (385)
22 3ipc_A ABC transporter, substr 61.0 19 0.00064 24.9 5.4 83 4-94 183-266 (356)
23 3lop_A Substrate binding perip 45.5 55 0.0019 22.6 5.8 72 20-94 197-273 (364)
24 3h5l_A Putative branched-chain 42.8 25 0.00084 25.1 3.7 82 4-93 209-292 (419)
25 3td9_A Branched chain amino ac 42.4 52 0.0018 22.7 5.2 82 4-93 194-278 (366)
26 3n0w_A ABC branched chain amin 40.6 40 0.0014 23.5 4.4 72 20-93 198-271 (379)
27 3eaf_A ABC transporter, substr 38.7 45 0.0015 23.4 4.5 56 20-78 200-256 (391)
28 3i09_A Periplasmic branched-ch 37.9 65 0.0022 22.3 5.2 82 4-93 185-268 (375)
29 3hut_A Putative branched-chain 35.8 64 0.0022 22.1 4.8 71 20-93 195-267 (358)
30 4gnr_A ABC transporter substra 33.0 41 0.0014 23.1 3.5 47 4-57 186-232 (353)
31 3lkb_A Probable branched-chain 29.8 1.3E+02 0.0044 20.9 5.6 56 20-78 199-254 (392)
32 3snr_A Extracellular ligand-bi 29.3 1E+02 0.0036 20.9 5.0 37 20-58 191-227 (362)
33 1oi7_A Succinyl-COA synthetase 25.4 82 0.0028 21.8 3.9 35 20-56 65-99 (288)
34 3sg0_A Extracellular ligand-bi 24.3 1.4E+02 0.0047 20.5 5.0 37 20-58 215-251 (386)
35 3d0w_A YFLH protein; GRAM-posi 22.3 23 0.00079 21.0 0.4 26 85-110 59-84 (104)
36 2yv1_A Succinyl-COA ligase [AD 21.5 89 0.003 21.7 3.4 35 20-56 71-105 (294)
37 3iab_A Ribonucleases P/MRP pro 20.2 1.8E+02 0.0061 18.5 4.7 21 18-38 74-94 (158)
No 1
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.78 E-value=9.7e-20 Score=137.47 Aligned_cols=108 Identities=34% Similarity=0.682 Sum_probs=69.2
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ 82 (123)
++..+.+++++++ |+|||+++....+..++..+.+.++.++++||+++.|+............++|+|+|.++..+
T Consensus 235 ~~~~l~~i~~~s~----a~vIi~~~~~~~~~~l~~~~~~~g~~~~~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ 310 (481)
T 3mq4_A 235 FDRIIKQLLDTPN----SRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRAT 310 (481)
T ss_dssp CSHHHHCCCCC--------CEEECCCSSHHHHHC----------CCCEEEC-----------------CCCEEEEECCCC
T ss_pred HHHHHHHHHhcCC----CEEEEEEEChHHHHHHHHHHHHccCCcceEEEEECccccccccccccchhhccEEEEecCcCc
Confidence 4455666555667 999999999999999988888888876469999999976543333345679999999999999
Q ss_pred CCChhhhhhhhcCCCCCCChhHHHHHHHhcCC
Q psy15460 83 VRGFDEYFLNLTVENNRRDPWFIEAKQNSKTS 114 (123)
Q Consensus 83 ip~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~ 114 (123)
+|||++|+++++|.++|+|+|++++|+..|+|
T Consensus 311 ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C 342 (481)
T 3mq4_A 311 VEGFDAYFTSRTLENNRRNVWFAEYWEENFNC 342 (481)
T ss_dssp CHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTC
T ss_pred cccHHHHhhcCCcCcCCCCHHHHHHHHHhcCC
Confidence 99999999999999999999999999999983
No 2
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.78 E-value=6.7e-19 Score=133.04 Aligned_cols=105 Identities=34% Similarity=0.648 Sum_probs=89.5
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCcC
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPV 83 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~i 83 (123)
...+.+++.+++ |+|||+++....+..++..+.+.++. ++||+++.|+............++|+|+|+++..++
T Consensus 232 ~~~l~~~i~~s~----a~vIi~~~~~~~~~~l~~~~~~~g~~--~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~i 305 (479)
T 3sm9_A 232 DSVIRELLQKPN----ARVVVLFMRSDDSRELIAAASRANAS--FTWVASDGWGAQESIIKGSEHVAYGAITLELASQPV 305 (479)
T ss_dssp HHHHHHHHTCTT----CCEEEEECCHHHHHHHHHHHHHTTCC--CEEEECTTTTTCHHHHTTCTTTTTTCEEEEECCCCC
T ss_pred HHHHHHHHhcCC----CeEEEEEcChHHHHHHHHHHHHhCCE--EEEEEechhhcCccccccccccCceEEEEEeccCCC
Confidence 345556677788 99999999999999999998888876 699999999865322222346789999999999999
Q ss_pred CChhhhhhhhcCCCCCCChhHHHHHHHhcCC
Q psy15460 84 RGFDEYFLNLTVENNRRDPWFIEAKQNSKTS 114 (123)
Q Consensus 84 p~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~ 114 (123)
|||++|+++++|.++|+|+|++++|+..|+|
T Consensus 306 pgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C 336 (479)
T 3sm9_A 306 RQFDRYFQSLNPYNNHRNPWFRDFWEQKFQC 336 (479)
T ss_dssp HHHHHHHHTCCTTTCTTCTTHHHHHHHHHTC
T ss_pred cchhhHhhccCcCcCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999999999984
No 3
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.77 E-value=9.8e-19 Score=132.61 Aligned_cols=110 Identities=35% Similarity=0.661 Sum_probs=91.8
Q ss_pred hhHHHHhhccC-CCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCC
Q psy15460 3 IDKCIYDVFPT-TNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN 81 (123)
Q Consensus 3 ~~~~i~~~~~~-~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~ 81 (123)
+..++.++.++ +. |+|||+|++...+..++..+.+.++.++++||++++|+............++|+++|+++..
T Consensus 243 ~~~~l~~i~~~~~~----a~vii~~~~~~~~~~l~~~~~~~g~~~k~~~i~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~ 318 (496)
T 3ks9_A 243 FDRLLRKLRERLPK----ARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSP 318 (496)
T ss_dssp HHHHHHHHHTTTTT----TCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTCHHHHTTCHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHhccCc----eEEEEEecChHHHHHHHHHHHHhCCCCcEEEEEechhccccccccccccccCceEEEeccCC
Confidence 34566666664 66 99999999998888899999999998834799999997654322233467899999999999
Q ss_pred cCCChhhhhhhhcCCCCCCChhHHHHHHHhcCCCccC
Q psy15460 82 PVRGFDEYFLNLTVENNRRDPWFIEAKQNSKTSNVDY 118 (123)
Q Consensus 82 ~ip~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~~c~~ 118 (123)
++|||++|+++++|.++|+|+|++++|+..|+ |.+
T Consensus 319 ~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~--C~~ 353 (496)
T 3ks9_A 319 EVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQ--CRL 353 (496)
T ss_dssp CCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTT--CBC
T ss_pred cCcchHhHhccCCcCCCCCCHHHHHHHHHHcC--CCC
Confidence 99999999999999999999999999999998 543
No 4
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.65 E-value=9.2e-16 Score=117.46 Aligned_cols=106 Identities=34% Similarity=0.649 Sum_probs=90.1
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ 82 (123)
++.++.+++.+++ |+|||+++....+..++..+.+.++ + ++||+++.|.............++|++++.++..+
T Consensus 232 ~~~~l~~i~~~s~----a~vIi~~~~~~~~~~~~~~~~~~g~-~-~~~i~s~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ 305 (555)
T 2e4u_A 232 YDSVIRELLQKPN----ARVVVLFMRSDDSRELIAAANRVNA-S-FTWVASDGWGAQESIVKGSEHVAYGAITLELASHP 305 (555)
T ss_dssp HHHHHHHHHTCTT----CCEEEEECCHHHHHHHHHHHHHTTC-C-CEEEECTTTTTCGGGTTTCHHHHTTCEEEEECCCC
T ss_pred HHHHHHHHhccCC----CCEEEEEcCHHHHHHHHHHHHHhcC-C-eEEEEeccccccchhhccchhhcceEEEEEeccCC
Confidence 3456777777778 9999999999888888888888777 7 89999999976543332234568999999999999
Q ss_pred CCChhhhhhhhcCCCCCCChhHHHHHHHhcCC
Q psy15460 83 VRGFDEYFLNLTVENNRRDPWFIEAKQNSKTS 114 (123)
Q Consensus 83 ip~f~~fl~~l~p~~~~~~~~~~~~w~~~f~~ 114 (123)
+|+|++|+.+++|.++|+++++.++|+..|+|
T Consensus 306 ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c 337 (555)
T 2e4u_A 306 VRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQC 337 (555)
T ss_dssp CHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTC
T ss_pred CCcHHHHHhhCCcccCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999984
No 5
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=97.96 E-value=1.3e-05 Score=58.95 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=66.9
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccceEEEeecC--
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA-- 80 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~-- 80 (123)
...++++.. + ++|||+++.......++..+.+.++.+ +++||+++.|..... ..++|+|++..+.
T Consensus 197 ~~~l~~i~~--~----~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~------~~~~g~l~~~~~~~~ 264 (435)
T 1dp4_A 197 PKLLRAVRR--K----GRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLK------SAQGLVPQKPWERGD 264 (435)
T ss_dssp HHHHHHHHH--H----CSEEEEESCHHHHHHHHHHHHHTTCCTTTCEEEEECTTCTTSC------SSCTTSCBCTTCCSS
T ss_pred HHHHHHHHh--h----CceEEEecChHHHHHHHHHHHHcCCCCCCEEEEEEeccccccc------ccccccccCCcccCC
Confidence 445666554 6 899999999988888888888887754 269999998864321 1236777554332
Q ss_pred CcCCChhhhhhh---hcCCCCCCChhHHHHHHHhcC
Q psy15460 81 NPVRGFDEYFLN---LTVENNRRDPWFIEAKQNSKT 113 (123)
Q Consensus 81 ~~ip~f~~fl~~---l~p~~~~~~~~~~~~w~~~f~ 113 (123)
..++++.+++.. ..| .+|++++.++||+..+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~ 299 (435)
T 1dp4_A 265 GQDRSARQAFQAAKIITY-KEPDNPEYLEFLKQLKL 299 (435)
T ss_dssp SCHHHHHHHGGGEEEEEE-CCCCSHHHHHHHHHHHH
T ss_pred cchHHHHHHhheeEEEec-CCCCChhHHHHHHHHHH
Confidence 345667666665 455 56788999999986543
No 6
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=97.65 E-value=3.3e-05 Score=56.96 Aligned_cols=87 Identities=9% Similarity=0.218 Sum_probs=58.3
Q ss_pred hhHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeec----------CcccccccCCCcccccc
Q psy15460 3 IDKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSD----------GWSARGLVSDGSEAEVE 71 (123)
Q Consensus 3 ~~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~----------~w~~~~~~~~~~~~~~~ 71 (123)
+...++++. ++ ++|||+++....+..++..+.+.++.++ .+||+++ .|...............
T Consensus 201 ~~~~l~~i~--~~----~~vii~~~~~~~~~~~~~~~~~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 274 (441)
T 1jdp_A 201 LEDIVRNIQ--AS----ERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYS 274 (441)
T ss_dssp HHHHHHHHH--HH----CSEEEEESCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGG
T ss_pred HHHHHHHhh--cC----CcEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEeccccccccCCCCccCCcccHHHHHHHH
Confidence 344555554 66 8999999999888888888888887652 4677888 66533211100001234
Q ss_pred ceEEEeecCCcCCChhhhhhhhcC
Q psy15460 72 GTLSLQPQANPVRGFDEYFLNLTV 95 (123)
Q Consensus 72 gsL~f~~~~~~ip~f~~fl~~l~p 95 (123)
+..++.++...+|+|++|....++
T Consensus 275 ~~~g~~~~~~~~p~~~~F~~~~~~ 298 (441)
T 1jdp_A 275 SLQTVTLLRTVKPEFEKFSMEVKS 298 (441)
T ss_dssp GEEEEEECCCCCHHHHHHHHHHHH
T ss_pred hheEEeecCCCCchHHHHHHHHHH
Confidence 455577777789999999988654
No 7
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=97.44 E-value=0.00017 Score=52.47 Aligned_cols=71 Identities=13% Similarity=0.231 Sum_probs=50.3
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecCcccccccCCCccccccceEEEeecC
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA 80 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~ 80 (123)
...+.+.+.+++ |+|||++++...+..++..+.+.++.++ ++||+++.|.......+ .....|.+++.++.
T Consensus 183 ~~~l~~~i~~~~----a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t~~~~~~~~~~~--~~~~~g~~~~~~~~ 254 (364)
T 3qel_B 183 DSKIQNQLKKLQ----SPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVP--SEFPTGLISVSYDE 254 (364)
T ss_dssp SCHHHHHHTTCC----CSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECHHHHCSTTCCC--TTSCTTCEECCBCT
T ss_pred HHHHHHHHHccC----CcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEecccccCccccc--ccCCCceEEEeecc
Confidence 345545666777 9999999999999999999998888772 49999998743222211 12346778776643
No 8
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=97.19 E-value=0.00092 Score=48.30 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=50.1
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccceEEEeecCCcCCCh
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVRGF 86 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f 86 (123)
++|||+++.......++..+.+.++.+ .++||+++.|..... .....+|.+++.++..+++..
T Consensus 216 ~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~----~~~~~~g~lg~~~~~~~~~~~ 279 (384)
T 3qek_A 216 ARVIILSASEDDATAVYKSAAMLDMTGAGYVWLVGEREISGSA----LRYAPDGIIGLQLINGKNESA 279 (384)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCSSTTCEEECCSGGGSGGG----GSSCCTTCEEEEETTTTCHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCccCCeEEEEecccccccc----ccccCCccEEEEEcCCCchhH
Confidence 899999999999999999999888864 279999999863322 224578999999988776643
No 9
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=96.91 E-value=0.0026 Score=46.29 Aligned_cols=75 Identities=5% Similarity=-0.009 Sum_probs=55.2
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccceEEEeecCCcCCChhhhhhhhcC
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVRGFDEYFLNLTV 95 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~l~p 95 (123)
++|||+++.......++..+.+.++.+ .++||.++.|...... ........|.+++.+.....|++++|+....-
T Consensus 186 ~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~ 261 (389)
T 3o21_A 186 EKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILL-ERVMHGGANITGFQIVNNENPMVQQFIQRWVR 261 (389)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC-HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccccH-HHHhcCCcceEEEEEecCCChhHHHHHHHHHh
Confidence 899999999998888999998888754 1699999877543321 11122345678888777778999999988653
No 10
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=96.48 E-value=0.011 Score=42.66 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=56.5
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecCcccccccCCCccccccceEEEeecCCc
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ 82 (123)
...+.++. .++ ++|||+++.......++..+.+.++.++ ++||.++.+..... .........|.+++......
T Consensus 181 ~~~l~~i~-~~~----~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~-l~~~~~~~~~~~g~~~~~~~ 254 (393)
T 3om0_A 181 TPLLKEIR-DDK----VSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILH-LDGIVEDSSNILGFSMFNTS 254 (393)
T ss_dssp HHHHHHHH-HHT----CSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCC-CTTTCCSSCSEEEEECCCTT
T ss_pred HHHHHHHH-hcC----CeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccc-hhhhhccCCcEEEEEEecCC
Confidence 34455443 345 8999999999999999999988887542 69998864322211 11112334578888877777
Q ss_pred CCChhhhhhhh
Q psy15460 83 VRGFDEYFLNL 93 (123)
Q Consensus 83 ip~f~~fl~~l 93 (123)
.|++++|....
T Consensus 255 ~~~~~~f~~~~ 265 (393)
T 3om0_A 255 HPFYPEFVRSL 265 (393)
T ss_dssp STTHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 88888887654
No 11
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=96.43 E-value=0.013 Score=46.24 Aligned_cols=75 Identities=8% Similarity=-0.023 Sum_probs=54.8
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccceEEEeecCCcCCChhhhhhhhcC
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVRGFDEYFLNLTV 95 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~l~p 95 (123)
++|||+++.......++..+.+.++.+ .++||.++.+...... ........|.+++.+.....|++++|......
T Consensus 180 ~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 255 (823)
T 3kg2_A 180 ERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL-LKIQFGGAEVSGFQIVDYDDSLVSKFIERWST 255 (823)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-HHhhcCCCCceEeeeecCCchHHHHHHHHHHh
Confidence 899999999999999999888888643 1699999854322211 11223345688888888788999999888653
No 12
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=96.03 E-value=0.017 Score=42.23 Aligned_cols=77 Identities=10% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecC----cccc-------cccC-CCcccccc
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDG----WSAR-------GLVS-DGSEAEVE 71 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~----w~~~-------~~~~-~~~~~~~~ 71 (123)
..+.++.. +. ++|||+++....+..++..+.+.++.++ ++||+++. |... .... ......++
T Consensus 197 ~~l~~i~~-~~----~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (433)
T 4f11_A 197 TSVKKLKG-ND----VRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAME 271 (433)
T ss_dssp HHHHHHHH-TT----CCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESCSCTTTTTCC------CCSCHHHHHHHHT
T ss_pred HHHHHHhh-CC----CeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHh
Confidence 44554443 55 8999999999999999999998887652 59999998 7421 0111 11235578
Q ss_pred ceEEEeecC---CcCCCh
Q psy15460 72 GTLSLQPQA---NPVRGF 86 (123)
Q Consensus 72 gsL~f~~~~---~~ip~f 86 (123)
|.+++.+.. ..+|+|
T Consensus 272 G~~~~~~~~~~~~~~~~~ 289 (433)
T 4f11_A 272 GYIGVDFEPLSSKQIKTI 289 (433)
T ss_dssp TCEEEEECSSCCCCCCCT
T ss_pred CEEEEEEeecCCCCCccc
Confidence 999988754 355665
No 13
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=95.99 E-value=0.021 Score=41.12 Aligned_cols=75 Identities=7% Similarity=-0.052 Sum_probs=48.7
Q ss_pred cceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccceEEEeecCCcCCChhhhhhhhc
Q psy15460 19 LIPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVRGFDEYFLNLT 94 (123)
Q Consensus 19 ~A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~l~ 94 (123)
+++|||+++.......++..+.+.++.+ .++||.++ |+..............+..++.+.....|.+++|.....
T Consensus 179 ~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~ 254 (376)
T 3hsy_A 179 KERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIAN-LGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWS 254 (376)
T ss_dssp --CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECS-SBTTSTTGGGSCCTTCEEEEEESCCTTSHHHHHHHHHHT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcC-CCccccchHHhhcCCcCceEEEEecCCchHHHHHHHHHH
Confidence 3899999999999888999998888743 16999986 322211111111112236677766666788888888765
No 14
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=95.54 E-value=0.028 Score=40.03 Aligned_cols=74 Identities=1% Similarity=-0.114 Sum_probs=52.2
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccceEEEeecCCcCCChhhhhhhhc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVRGFDEYFLNLT 94 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~l~ 94 (123)
++|||+++.......++..+.+.++.+ .++||.++.|....... .......|..++.......|.+++|.....
T Consensus 185 ~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~ 259 (389)
T 4gpa_A 185 EKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISLE-RFIHGGANVTGFQLVDFNTPMVTKLMDRWK 259 (389)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCCH-HHHHHBCEEEEEECSCTTSHHHHHHHHHHT
T ss_pred CcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchhhh-hhhhcccceEEEEeecCCChHHHHHHHHHH
Confidence 899999999999999999988887643 26999998775433221 112234567778777777788777776543
No 15
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=95.53 E-value=0.027 Score=40.64 Aligned_cols=75 Identities=5% Similarity=-0.056 Sum_probs=50.7
Q ss_pred CcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecCcccccccCCCccccccceEEEeecCCcCCChhhhhhhh
Q psy15460 18 LLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANPVRGFDEYFLNL 93 (123)
Q Consensus 18 ~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~ip~f~~fl~~l 93 (123)
+.++|||+++.......++..+.+.++.++ ++||.++.+...... ........|.+++.+.....|.+++|....
T Consensus 181 ~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~ 256 (384)
T 3saj_A 181 KKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL-NKFKESGANVTGFQLVNYTDTIPARIMQQW 256 (384)
T ss_dssp CSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH-HHHHHTTCCEEEEECCCTTSHHHHHHHHHH
T ss_pred cCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH-HHhhCCCcceEEEEeecCCChHHHHHHHHH
Confidence 349999999999999999999998887651 589998754322111 111112235777777666677777777664
No 16
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=86.32 E-value=4.4 Score=28.85 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=48.0
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCC-ceEEEeecCcccccccCCCccccccc--eEEEeecCC
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGWSARGLVSDGSEAEVEG--TLSLQPQAN 81 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~-~kvwI~s~~w~~~~~~~~~~~~~~~g--sL~f~~~~~ 81 (123)
..+.++.. ++ ++||++++.......++..+.+.++.+ ..+||.+.. +........ . ...| ..++.+...
T Consensus 182 ~~l~~i~~-~~----~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~-~~~~~~~~~-~-~~~g~~~~~~~~~~~ 253 (395)
T 3h6g_A 182 PLLKEMKR-GK----EFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTL-DLFALDVEP-Y-RYSGVNMTGFRILNT 253 (395)
T ss_dssp HHHHHHHH-TT----CCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCT-TGGGBCCTT-T-TTSCCEEEEEECSCT
T ss_pred HHHHHHhh-cC----CeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecC-ceeEechHH-h-ccCccceEEEEEecC
Confidence 34444433 45 899999999999999999998888643 168887742 211100110 0 1223 345555444
Q ss_pred cCCChhhhhhhh
Q psy15460 82 PVRGFDEYFLNL 93 (123)
Q Consensus 82 ~ip~f~~fl~~l 93 (123)
.-|..++|....
T Consensus 254 ~~~~~~~f~~~~ 265 (395)
T 3h6g_A 254 ENTQVSSIIEKW 265 (395)
T ss_dssp TSHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 556677776654
No 17
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=78.94 E-value=6.3 Score=27.17 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=47.9
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeec-CCc
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQ-ANP 82 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~-~~~ 82 (123)
...+.+++. .. +++|++++.......++..+.+.++.. . |++++.|...... .......+|.+...+. ...
T Consensus 183 ~~~~~~l~~-~~----~d~i~~~~~~~~a~~~~~~~~~~g~~~-~-~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 254 (346)
T 1usg_A 183 SALIARLKK-EN----IDFVYYGGYYPEMGQMLRQARSVGLKT-Q-FMGPEGVGNASLS-NIAGDAAEGMLVTMPKRYDQ 254 (346)
T ss_dssp HHHHHHHHH-TT----CCEEEEESCHHHHHHHHHHHHHTTCCC-E-EEECGGGCCTTHH-HHHGGGGTTCEEEECCCGGG
T ss_pred HHHHHHHHh-cC----CCEEEEcCcchHHHHHHHHHHHcCCCC-e-EEecCCCCcHHHH-HHhhHhhCCeEEecCCCCCC
Confidence 345556554 34 789988886666777888888877765 3 8998888543211 1111235677665543 123
Q ss_pred CCChhhhhhh
Q psy15460 83 VRGFDEYFLN 92 (123)
Q Consensus 83 ip~f~~fl~~ 92 (123)
.|..++|...
T Consensus 255 ~~~~~~f~~~ 264 (346)
T 1usg_A 255 DPANQGIVDA 264 (346)
T ss_dssp SGGGHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4555555544
No 18
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=77.99 E-value=3.7 Score=28.69 Aligned_cols=83 Identities=8% Similarity=0.101 Sum_probs=48.4
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCc-eEEEeecCcccccccCCCccccccceEEEeecCC--
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGN-FSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN-- 81 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~-kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~-- 81 (123)
..+.++.. .. +++|++++.......++..+.+.++.++ ..|++++.|.... .........+|.+...+...
T Consensus 185 ~~~~~l~~-~~----~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~g~~~~g~~~~~~~~~~~ 258 (368)
T 4eyg_A 185 PFLQRMKD-AK----PDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDD-LLNSMGDAALGVVTAHMYSAAH 258 (368)
T ss_dssp HHHHHHHH-HC----CSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHH-HHTTCCGGGTTCEEEESCCTTC
T ss_pred HHHHHHHh-cC----CCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHH-HHHhhhhhhCCeEEeeecCCCC
Confidence 44455443 34 7899998887788888888888887652 2467766443221 11111234567776654432
Q ss_pred cCCChhhhhhhh
Q psy15460 82 PVRGFDEYFLNL 93 (123)
Q Consensus 82 ~ip~f~~fl~~l 93 (123)
..|..++|....
T Consensus 259 ~~~~~~~f~~~~ 270 (368)
T 4eyg_A 259 PSAMNKEFVAAY 270 (368)
T ss_dssp CSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 345666665544
No 19
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=73.95 E-value=4.6 Score=28.59 Aligned_cols=73 Identities=10% Similarity=-0.082 Sum_probs=42.0
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEee--cCCcCCChhhhhhhh
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQP--QANPVRGFDEYFLNL 93 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~--~~~~ip~f~~fl~~l 93 (123)
+++|++++.......++..+.+.++.+ .+++.+..+..............+|.+.... .....|..++|....
T Consensus 200 ~d~v~~~~~~~~~~~~~~~~~~~g~~~-~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~ 274 (387)
T 3i45_A 200 PEGLFNVLFGADLPKFVREGRVRGLFA-GRQVVSMLTGEPEYLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAY 274 (387)
T ss_dssp CSEEEECCCTTHHHHHHHHHHHHTSST-TCEEEEEEEESHHHHGGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHH
T ss_pred CCEEEEcCccHHHHHHHHHHHHcCCCC-CCeEEeecCCChHHHHHhhhhccCceEEecccccCCCCHHHHHHHHHH
Confidence 789999988888888888888888876 4666654432111111111122455554321 223456666666554
No 20
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=65.34 E-value=13 Score=25.92 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=43.0
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCC--cCCChhhhhhhh
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQAN--PVRGFDEYFLNL 93 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~--~ip~f~~fl~~l 93 (123)
+++|+++++......++..+.+.++.. -|+++. |... ..........+|.+...+... ..|..++|....
T Consensus 207 ~dai~~~~~~~~a~~~~~~~~~~g~~v--p~~~~~-~~~~-~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~ 278 (375)
T 4evq_A 207 PDCVYAFFSGGGALKFIKDYAAANLGI--PLWGPG-FLTD-GVEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSF 278 (375)
T ss_dssp CSEEEEECCTHHHHHHHHHHHHTTCCC--CEEEEG-GGTT-TTHHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHH
T ss_pred CCEEEEecCcchHHHHHHHHHHcCCCc--eEEecC-cCCH-HHHHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHH
Confidence 788998888888888888888877653 355554 6322 111111234677777665433 346677776654
No 21
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=64.40 E-value=9.8 Score=26.88 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=46.4
Q ss_pred HHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecC--Cc
Q psy15460 5 KCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA--NP 82 (123)
Q Consensus 5 ~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~--~~ 82 (123)
..+.+++. .. +++|++.++...+..++..+.+.++.++++++.+..|.... .........+|.+...+.. ..
T Consensus 188 ~~~~~l~~-~~----pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 261 (385)
T 1pea_A 188 RAVERIYQ-AR----ADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAE-VAKMESDVAEGQVVVAPYFSSID 261 (385)
T ss_dssp HHHHHHHH-HT----CSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHHH-HTTSCHHHHTTCEEEESCCTTCS
T ss_pred HHHHHHHH-CC----CCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchHH-HHhcCchhhCCeEEecccccccC
Confidence 34555544 24 78888877666777888888888876424555555564321 1111112456777665432 23
Q ss_pred CCChhhhhhhh
Q psy15460 83 VRGFDEYFLNL 93 (123)
Q Consensus 83 ip~f~~fl~~l 93 (123)
.|..++|....
T Consensus 262 ~~~~~~f~~~~ 272 (385)
T 1pea_A 262 TPASRAFVQAC 272 (385)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 45556665554
No 22
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=61.04 E-value=19 Score=24.89 Aligned_cols=83 Identities=17% Similarity=0.120 Sum_probs=49.9
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecC-Cc
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA-NP 82 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~-~~ 82 (123)
...+.++.. .. +++|++++....+..++..+.+.++.. -|++++.|...... ........|.+...+.. ..
T Consensus 183 ~~~~~~l~~-~~----~d~v~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~~~~~~~~-~~~g~~~~g~~~~~~~~~~~ 254 (356)
T 3ipc_A 183 SALISKMKE-AG----VSIIYWGGLHTEAGLIIRQAADQGLKA--KLVSGDGIVSNELA-SIAGDAVEGTLNTFGPDPTL 254 (356)
T ss_dssp HHHHHHHHH-TT----CCEEEEESCHHHHHHHHHHHHHHTCCC--EEEECGGGCSHHHH-HHHGGGGTTCEEEESCCGGG
T ss_pred HHHHHHHHh-cC----CCEEEEccCchHHHHHHHHHHHCCCCC--cEEEeccccCHHHH-HHhhHHhCCEEEEecCCCCC
Confidence 334444443 44 789999998888888888888888765 57888776532211 11112355655554322 34
Q ss_pred CCChhhhhhhhc
Q psy15460 83 VRGFDEYFLNLT 94 (123)
Q Consensus 83 ip~f~~fl~~l~ 94 (123)
.|..++|.....
T Consensus 255 ~~~~~~f~~~~~ 266 (356)
T 3ipc_A 255 RPENKELVEKFK 266 (356)
T ss_dssp CGGGHHHHHHHH
T ss_pred ChhHHHHHHHHH
Confidence 566777766543
No 23
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=45.54 E-value=55 Score=22.61 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=44.5
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCcc-ccccceEEEee----cCCcCCChhhhhhhhc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSE-AEVEGTLSLQP----QANPVRGFDEYFLNLT 94 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~-~~~~gsL~f~~----~~~~ip~f~~fl~~l~ 94 (123)
+++|+++++......++..+.+.++.. . |++.+.|...... .... ....|.+.... .....|..++|.....
T Consensus 197 ~d~v~~~~~~~~a~~~~~~~~~~g~~~-~-~i~~~~~~~~~~~-~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~ 273 (364)
T 3lop_A 197 VQAIFLGATAEPAAQFVRQYRARGGEA-Q-LLGLSSIDPGILQ-KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARA 273 (364)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCCC-E-EEECTTSCHHHHH-HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHH
T ss_pred CCEEEEecCcHHHHHHHHHHHHcCCCC-e-EEEeccCChHHHH-HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 789999888888888888888888765 3 7787766532211 1111 33566665431 1245566666666543
No 24
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=42.84 E-value=25 Score=25.07 Aligned_cols=82 Identities=11% Similarity=-0.100 Sum_probs=45.7
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeC-chhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeec-CC
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGS-DQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQ-AN 81 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~-~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~-~~ 81 (123)
...+.++.. .+ +++|++.+. ......++..+.+.++ . ..|++++.|...... .......+|.+..... ..
T Consensus 209 ~~~l~~i~~-~~----~d~v~~~~~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~-~~~g~~~~G~~~~~~~~~~ 280 (419)
T 3h5l_A 209 GPTLAKLRA-DP----PAVIVVTHFYPQDQALFMNQFMTDPT-N-SLVYLQYGASLAAFR-DIAGDNSVGVTYATVLGTL 280 (419)
T ss_dssp HHHHHHHHH-SC----CSEEEECCCCHHHHHHHHHHHTTSCC-S-CEEEECSGGGSHHHH-HHHGGGGTTCEEEESSCCC
T ss_pred HHHHHHHHh-cC----CCEEEEccccCchHHHHHHHHHHcCC-C-ceEEecCCCCcHHHH-HhhhhhcCceEEeecCCCC
Confidence 344555443 34 789988865 3567777888777777 4 588888888543211 1111234565544322 22
Q ss_pred cCCChhhhhhhh
Q psy15460 82 PVRGFDEYFLNL 93 (123)
Q Consensus 82 ~ip~f~~fl~~l 93 (123)
..|..++|....
T Consensus 281 ~~~~~~~f~~~~ 292 (419)
T 3h5l_A 281 QDEMGDAFAKAY 292 (419)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 335555565543
No 25
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=42.36 E-value=52 Score=22.72 Aligned_cols=82 Identities=20% Similarity=0.170 Sum_probs=48.7
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecCCc-
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP- 82 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~~~- 82 (123)
...+.++.. .. +++|++.+.......++..+.+.++.. .|++.+.|...... ........|.+........
T Consensus 194 ~~~~~~l~~-~~----~d~v~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 265 (366)
T 3td9_A 194 SAQLSVAMS-FN----PDAIYITGYYPEIALISRQARQLGFTG--YILAGDGADAPELI-EIGGEAVEGLLFTTHYHPKA 265 (366)
T ss_dssp HHHHHHHHH-TC----CSEEEECSCHHHHHHHHHHHHHTTCCS--EEEECGGGCSTHHH-HHHGGGGTTCEEEESCCGGG
T ss_pred HHHHHHHHh-cC----CCEEEEccchhHHHHHHHHHHHcCCCc--eEEeeCCcCCHHHH-HHHhHHhCCeEEEEeeCCCC
Confidence 344555543 34 789998888888888888888887754 57888877543211 1112235666655533221
Q ss_pred --CCChhhhhhhh
Q psy15460 83 --VRGFDEYFLNL 93 (123)
Q Consensus 83 --ip~f~~fl~~l 93 (123)
.|..++|....
T Consensus 266 ~~~~~~~~f~~~~ 278 (366)
T 3td9_A 266 ASNPVAKKFVEVY 278 (366)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 45556665543
No 26
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=40.60 E-value=40 Score=23.54 Aligned_cols=72 Identities=10% Similarity=-0.014 Sum_probs=43.1
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCce-EEEeecCcccccccCCCccccccceEEEeecC-CcCCChhhhhhhh
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNF-SWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA-NPVRGFDEYFLNL 93 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~k-vwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~-~~ip~f~~fl~~l 93 (123)
+++|++.+.......++..+.+.++.. + +++++..|.... .........+|.....+.. ...|..++|....
T Consensus 198 ~d~v~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~ 271 (379)
T 3n0w_A 198 AQLIVSTSGGAANINIMKQAREFGLPS-KTQKVGGMIDILTD-VKSAGLRVMQGQEYATSFYWNMDDRTRAFAKRF 271 (379)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHTTCSC-SSCEEECCBCCHHH-HHHHCHHHHTTCEEEESCCTTSSHHHHHHHHHH
T ss_pred CCEEEEecccchHHHHHHHHHHcCCCC-CCcEEEecccchHH-HHhhCHHhhCCeEEEeeecCCCCHHHHHHHHHH
Confidence 789999888777778888888888766 4 577776554221 1111113356666554322 2245566665543
No 27
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=38.73 E-value=45 Score=23.43 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=34.1
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccc-eEEEee
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEG-TLSLQP 78 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~g-sL~f~~ 78 (123)
+++|++.++......++..+.+.++.. -+++++ |..............+| .+...+
T Consensus 200 ~dav~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~-~~~~~~~~~~~g~~~~g~~~~~~~ 256 (391)
T 3eaf_A 200 PDYVWCGNTISSCSLLGRAMAKVGLDA--FLLTNV-WGFDERSPQLIGEGGYGKVFGISP 256 (391)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHTCCC--EEEECG-GGCSTTHHHHHCGGGTTSEEEEES
T ss_pred CCEEEEecCcHHHHHHHHHHHHCCCCc--eEEEec-cCCCHHHHHhhhhhccCcEEEEEE
Confidence 899999988778888888888888765 345554 43222221111233677 554443
No 28
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=37.90 E-value=65 Score=22.33 Aligned_cols=82 Identities=6% Similarity=0.002 Sum_probs=45.8
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCce-EEEeecCcccccccCCCccccccceEEEeecC-C
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNF-SWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA-N 81 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~k-vwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~-~ 81 (123)
...+.++.. +. +++|++.+.......++..+.+.++.. . .+++.+.|... .........+|.....+.. .
T Consensus 185 ~~~l~~i~~-~~----~d~v~~~~~~~~~~~~~~~~~~~g~~~-~~~i~g~~~~~~~--~~~~~~~~~~g~~~~~~~~~~ 256 (375)
T 3i09_A 185 SSFLLQAQS-SK----AQILGLANAGGDTVNAIKAAKEFGITK-TMKLAALLMFIND--VHALGLETTQGLVLTDSWYWN 256 (375)
T ss_dssp HHHHHHHHH-TC----CSEEEEECCHHHHHHHHHHHHHTTGGG-TCEEEESSCCHHH--HHHHCHHHHTTCEEEESCCTT
T ss_pred HHHHHHHHh-CC----CCEEEEecCchhHHHHHHHHHHcCCCc-CceEEecccchhh--HhhhChhhhCCeeeeeeecCC
Confidence 344444443 34 799999888877888888888888766 4 55655544321 1111112355665544322 2
Q ss_pred cCCChhhhhhhh
Q psy15460 82 PVRGFDEYFLNL 93 (123)
Q Consensus 82 ~ip~f~~fl~~l 93 (123)
..|..++|....
T Consensus 257 ~~~~~~~f~~~~ 268 (375)
T 3i09_A 257 RDQASRQWAQRY 268 (375)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 235555555543
No 29
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=35.82 E-value=64 Score=22.12 Aligned_cols=71 Identities=15% Similarity=0.114 Sum_probs=43.9
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEeecC--CcCCChhhhhhhh
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA--NPVRGFDEYFLNL 93 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~~~--~~ip~f~~fl~~l 93 (123)
+++|+++++...+..++..+.+.++.. -|++++.|...... ........|.+...+.. ...|..++|....
T Consensus 195 ~d~i~~~~~~~~a~~~~~~~~~~g~~~--p~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~ 267 (358)
T 3hut_A 195 PQAIYLAMAYEDAAPFLRALRARGSAL--PVYGSSALYSPKFI-DLGGPAVEGVRLATAFVLGASDPVVVEFVSAY 267 (358)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCCC--CEEECGGGCSHHHH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHH
T ss_pred CCEEEEccCchHHHHHHHHHHHcCCCC--cEEecCcccCHHHH-HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHH
Confidence 688988888878888888888888754 58888877533211 11113356666655432 2345566665554
No 30
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=32.98 E-value=41 Score=23.13 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=33.5
Q ss_pred hHHHHhhccCCCCCCcceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcc
Q psy15460 4 DKCIYDVFPTTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWS 57 (123)
Q Consensus 4 ~~~i~~~~~~~~~~~~A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~ 57 (123)
...+.++.. +. +++|++.+.......++..+.+.++.. .+++.+.|.
T Consensus 186 ~~~l~~i~~-~~----~d~v~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~ 232 (353)
T 4gnr_A 186 QAALTKMKG-KD----FDAIVVPGYYNEAGKIVNQARGMGIDK--PIVGGDGFN 232 (353)
T ss_dssp HHHHHHHHT-SC----CSEEECCSCHHHHHHHHHHHHHTTCCS--CEEECGGGC
T ss_pred HHHHHHHHh-cC----CCEEEEecCcHHHHHHHHHHHHcCCCC--cEEEecccc
Confidence 334555443 45 899999999888888898888888766 356666554
No 31
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=29.79 E-value=1.3e+02 Score=20.93 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=35.3
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCcccccccCCCccccccceEEEee
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQP 78 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~~~~~~~~~~~~~~gsL~f~~ 78 (123)
+++|++++.......++..+.+.++.. -|++++.+.... ..........|.+...+
T Consensus 199 ~dav~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~~~~~~-~~~~~g~~~~g~~~~~~ 254 (392)
T 3lkb_A 199 VEYVVHQNVAGPVANILKDAKRLGLKM--RHLGAHYTGGPD-LIALAGDAAEGFLWATS 254 (392)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCCC--EEEECGGGCSHH-HHHHHGGGGTTCEEEES
T ss_pred CCEEEEecCcchHHHHHHHHHHcCCCc--eEEEecCcccHH-HHHhhhhhhcCeEEEEe
Confidence 789998898888888888888888754 567775543221 11111123566666554
No 32
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=29.34 E-value=1e+02 Score=20.87 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=28.0
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCccc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSA 58 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~ 58 (123)
+++|++++.......++..+.+.++.. . +++...|..
T Consensus 191 ~dav~~~~~~~~a~~~~~~~~~~g~~~-p-~i~~~g~~~ 227 (362)
T 3snr_A 191 PDAILVGASGTAAALPQTTLRERGYNG-L-IYQTHGAAS 227 (362)
T ss_dssp CSEEEEECCHHHHHHHHHHHHHTTCCS-E-EEECGGGCS
T ss_pred CCEEEEecCcchHHHHHHHHHHcCCCc-c-EEeccCcCc
Confidence 788888887777788888888888765 3 477776653
No 33
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=25.36 E-value=82 Score=21.78 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=26.0
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGW 56 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w 56 (123)
++++|+|...........++.+.++. .+|+.+..+
T Consensus 65 ~Dv~Ii~vp~~~~~~~~~ea~~~Gi~--~vVi~t~G~ 99 (288)
T 1oi7_A 65 VDASIIFVPAPAAADAALEAAHAGIP--LIVLITEGI 99 (288)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHTTCS--EEEECCSCC
T ss_pred CCEEEEecCHHHHHHHHHHHHHCCCC--EEEEECCCC
Confidence 78899998888888888887777653 266666554
No 34
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=24.31 E-value=1.4e+02 Score=20.48 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=28.1
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCccc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSA 58 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w~~ 58 (123)
+++|+++++......++..+.+.++.. -+++.+.|..
T Consensus 215 ~dav~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~~~~ 251 (386)
T 3sg0_A 215 PDAVFIASAGTPAVLPQKALRERGFKG--AIYQTHGVAT 251 (386)
T ss_dssp CSEEEEECCSGGGHHHHHHHHHTTCCS--EEECCGGGCS
T ss_pred CCEEEEecCcchHHHHHHHHHHcCCCC--cEEeccccCC
Confidence 789988888777778888888888766 3677766643
No 35
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=22.26 E-value=23 Score=21.02 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=20.9
Q ss_pred ChhhhhhhhcCCCCCCChhHHHHHHH
Q psy15460 85 GFDEYFLNLTVENNRRDPWFIEAKQN 110 (123)
Q Consensus 85 ~f~~fl~~l~p~~~~~~~~~~~~w~~ 110 (123)
..-+||..--.+++++...++++|.-
T Consensus 59 ~iGdyLA~~vdP~N~EerlLkELW~V 84 (104)
T 3d0w_A 59 ILGDYLAKHEEPQNGEEMLLQELWSV 84 (104)
T ss_dssp HHHHHHHTCCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHh
Confidence 34678888777788899999999973
No 36
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=21.54 E-value=89 Score=21.67 Aligned_cols=35 Identities=6% Similarity=-0.107 Sum_probs=24.6
Q ss_pred ceEEEEEeCchhHHHHHHHHHHhccCCceEEEeecCc
Q psy15460 20 IPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGW 56 (123)
Q Consensus 20 A~VIVl~~~~~~~~~l~~~~~~~~~~~~kvwI~s~~w 56 (123)
++++|+|...........++.+.++.. +|+.+..+
T Consensus 71 ~Dv~ii~vp~~~~~~~v~ea~~~Gi~~--vVi~t~G~ 105 (294)
T 2yv1_A 71 ANASVIFVPAPFAKDAVFEAIDAGIEL--IVVITEHI 105 (294)
T ss_dssp CCEEEECCCHHHHHHHHHHHHHTTCSE--EEECCSCC
T ss_pred CCEEEEccCHHHHHHHHHHHHHCCCCE--EEEECCCC
Confidence 788888888888777777777766532 55555544
No 37
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=20.17 E-value=1.8e+02 Score=18.53 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.5
Q ss_pred CcceEEEEEeCchhHHHHHHH
Q psy15460 18 LLIPGVIVFGSDQEVAGMMRA 38 (123)
Q Consensus 18 ~~A~VIVl~~~~~~~~~l~~~ 38 (123)
.+.++|++++-..++..++..
T Consensus 74 ~~~~~V~l~syg~hIQKmLSI 94 (158)
T 3iab_A 74 GLQQVVCIFSYGPHIQKMLSI 94 (158)
T ss_dssp TCEEEEEEEEEGGGHHHHHHH
T ss_pred ccCceEEEEecChHHHHHHHH
Confidence 458999999998888766543
Done!