RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15460
(123 letters)
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 87.6 bits (217), Expect = 1e-21
Identities = 33/84 (39%), Positives = 53/84 (63%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V++F +D+++ ++ A +R + G+F WVGSD W ++ E EG +++QP+
Sbjct: 251 VVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRAT 310
Query: 83 VRGFDEYFLNLTVENNRRDPWFIE 106
V GFD YF + T+ENNRR+ WF E
Sbjct: 311 VEGFDAYFTSRTLENNRRNVWFAE 334
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 87.2 bits (216), Expect = 1e-21
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V+ F V G++ A+RR+ G FS +GSDGW+ R V +G E E G ++++ Q+
Sbjct: 260 VVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPE 319
Query: 83 VRGFDEYFLNLTVENNRRDPWFIE 106
VR FD+YFL L ++ N R+PWF E
Sbjct: 320 VRSFDDYFLKLRLDTNTRNPWFPE 343
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 83.7 bits (207), Expect = 2e-20
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V++F + ++ A R NA+ F+WV SDGW A+ + GSE G ++L+ + P
Sbjct: 247 VVLFMRSDDSRELIAAASRANAS--FTWVASDGWGAQESIIKGSEHVAYGAITLELASQP 304
Query: 83 VRGFDEYFLNLTVENNRRDPWFIE 106
VR FD YF +L NN R+PWF +
Sbjct: 305 VRQFDRYFQSLNPYNNHRNPWFRD 328
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 83.7 bits (207), Expect = 3e-20
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V++F + ++ A R+NA+ F+WV SDGW A+ + GSE G ++L+ ++P
Sbjct: 248 VVLFMRSDDSRELIAAANRVNAS--FTWVASDGWGAQESIVKGSEHVAYGAITLELASHP 305
Query: 83 VRGFDEYFLNLTVENNRRDPWFIE 106
VR FD YF +L NN R+PWF +
Sbjct: 306 VRQFDRYFQSLNPYNNHRNPWFRD 329
>3lop_A Substrate binding periplasmic protein; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.55A
{Ralstonia solanacearum}
Length = 364
Score = 34.2 bits (79), Expect = 0.006
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 2/60 (3%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
+ + + + A +R R +G L V G NP
Sbjct: 200 IFLGATAEPAAQFVRQYRARGGEAQL--LGLSSIDPGILQKVAGLDAVRGYSLALVMPNP 257
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION
channel, NMDA receptor, allosteri modulation,
phenylethanolamine, polyamine; HET: NAG BMA; 2.00A
{Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Length = 384
Score = 33.9 bits (77), Expect = 0.008
Identities = 5/36 (13%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 22 GVIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGW 56
+I+ S+ + + ++ ++ TG + W+ +
Sbjct: 218 VIILSASEDDATAVYKSAAMLDMTGAGYVWLVGERE 253
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein
fold, dimer, hormone/growth FACT receptor, lyase
complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP:
c.93.1.1 PDB: 1t34_A* 3a3k_A*
Length = 435
Score = 33.6 bits (76), Expect = 0.009
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 4/101 (3%)
Query: 22 GVIVFGSDQEVAGMMRAVRRMNAT-GNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQA 80
+ + S +M T ++ + D + + G +
Sbjct: 209 VIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDR 268
Query: 81 NPVRGFDEYFLNLTVENNRRDPWFIE-AKQNSKTSNVDYNI 120
+ + F + +P ++E KQ ++ +N
Sbjct: 269 SARQAFQAAKII--TYKEPDNPEYLEFLKQLKLLADKKFNF 307
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid
binding protein; branched amino acid, PSI-II, NYSGXRC,
structural genomics; 2.40A {Thermus thermophilus}
Length = 392
Score = 33.2 bits (76), Expect = 0.012
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V+ VA +++ +R+ +G+ L++ +A EG L
Sbjct: 202 VVHQNVAGPVANILKDAKRLGLKMRH--LGAHYTGGPDLIALAGDA-AEGFLWATSFYMA 258
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 30.9 bits (69), Expect = 0.081
Identities = 10/99 (10%), Positives = 30/99 (30%), Gaps = 9/99 (9%)
Query: 24 IVFGSDQEVAGMMRAVRRMNAT-GNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
I+ S + +M R T G++++ + +++ + + + +
Sbjct: 216 IMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSS 275
Query: 83 VRGFDEYFLNLTVENNRRDPWFIEAKQNSKTSNVDYNIE 121
++ P F + K+S +
Sbjct: 276 LQTVTLL--------RTVKPEFEKFSMEVKSSVEKQGLN 306
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC,
substrate binding P structural genomics, protein
structure initiative; 2.00A {Aeropyrum pernix}
Length = 391
Score = 30.1 bits (68), Expect = 0.15
Identities = 5/60 (8%), Positives = 14/60 (23%), Gaps = 3/60 (5%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDGWSARGLVSDGSEAEVEGTLSLQPQANP 82
V + + + RA+ ++ + + E G +
Sbjct: 203 VWCGNTISSCSLLGRAMAKVGLDAFL--LTNVWGFDERSPQLIGEG-GYGKVFGISPFIY 259
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 26.7 bits (58), Expect = 2.3
Identities = 4/35 (11%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 23 VIVFGSDQEVAGMMRAVRRMNATG-NFSWVGSDGW 56
++++ + +E + + TG ++W+
Sbjct: 198 ILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLV 232
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor,
periplasmic binding prote signaling protein; HET: PE4;
2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Length = 304
Score = 24.7 bits (54), Expect = 9.8
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 13 TTNLLLLIPGVIVFGSDQEVAGMMRAVRRMNATGNFSWVGSDG 55
++ + + GS + + +R + T + V
Sbjct: 186 VQRVIDMGNIDYIVGSAVAIEAAISELRSADKTHDIGLVSVYL 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.410
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,893,531
Number of extensions: 101592
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 19
Length of query: 123
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 41
Effective length of database: 4,412,271
Effective search space: 180903111
Effective search space used: 180903111
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)