BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15462
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 12 QEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71
+EH I VH+DGAR+FNA+ G+P+ E D+VMFCLS GL APVGS++ G +FI++
Sbjct: 171 KEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIER 230
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 12 QEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71
+EH I VH+DGAR+FNA+ G+P+ E D+VMFCLS GL APVGS++ G +FI++
Sbjct: 163 KEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIER 222
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 72.4 bits (176), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 12 QEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71
+EH I VH+DGAR+FNA+ G+P+ E D+V FCLS GL APVGS++ G +FI++
Sbjct: 163 KEHGINVHIDGARIFNASIASGVPVKEYAGYADSVXFCLSXGLCAPVGSVVVGDRDFIER 222
>pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|B Chain B, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|C Chain C, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|D Chain D, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|E Chain E, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|F Chain F, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 357
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 11 CQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70
C+E I +H+DGAR+F Y AE+ D++ GLG G+ILAGP F Q
Sbjct: 165 CRERGIRLHLDGARLFEXLPYYEKTAAEIAGLFDSIYISFYXGLGGIAGAILAGPAAFCQ 224
>pdb|3PJ0|A Chain A, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|B Chain B, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|C Chain C, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|D Chain D, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
Length = 359
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTV 46
++ C E I +H+DGAR++ + E+CA D+V
Sbjct: 162 KISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSV 202
>pdb|1V72|A Chain A, Crystal Structure Of Phenylserine Aldolase From
Pseudomonas Putida
Length = 356
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 11 CQEHNIPVHMDGARVFNAASYLGLPLAEVC--ASVDTVMFCLSK 52
C+ ++ +HMDG+R NA LG AE+ A VD + F +K
Sbjct: 169 CKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATK 212
>pdb|1TVM|A Chain A, Nmr Structure Of Enzyme Gatb Of The Galactitol-Specific
Phosphoenolpyruvate-Dependent Phosphotransferase System
Length = 113
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYL-GLPLAEVCASVD 44
++K CQ HNIPV + RV +Y+ G+ L A VD
Sbjct: 41 EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVD 80
>pdb|1SVV|A Chain A, Initial Stuctural Analysis Of Leishmania Major Threonine
Aldolase
pdb|1SVV|B Chain B, Initial Stuctural Analysis Of Leishmania Major Threonine
Aldolase
Length = 359
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 7 LKARCQEHNIPVHMDGARVFNAAS 30
+ A C+EH + + +DGAR+ +A S
Sbjct: 169 ISASCKEHGLYLFLDGARLASALS 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,091,006
Number of Sequences: 62578
Number of extensions: 65003
Number of successful extensions: 160
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 8
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)