BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15462
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13427|GLY1_CANAX Low-specificity L-threonine aldolase OS=Candida albicans GN=GLY1
PE=3 SV=1
Length = 374
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 47/61 (77%)
Query: 11 CQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70
C+E++I +H+DGAR++NA+ G+ + E C+ D+V CLSK LGAP+GS+L G E+FI+
Sbjct: 172 CRENDIRLHLDGARLWNASVATGISIKEYCSYFDSVSLCLSKSLGAPIGSVLVGDEKFIR 231
Query: 71 K 71
K
Sbjct: 232 K 232
>sp|Q21890|YF64_CAEEL Uncharacterized protein R102.4 OS=Caenorhabditis elegans GN=R102.4
PE=2 SV=3
Length = 413
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 45/65 (69%)
Query: 7 LKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPE 66
+K + ++ VHMDGAR++NAA ++++ + DTV C SKGLGAPVGSI+ GP+
Sbjct: 220 VKQLAERRDLKVHMDGARIYNAAVASNCSVSKIASFADTVQMCFSKGLGAPVGSIVVGPK 279
Query: 67 EFIQK 71
+FI +
Sbjct: 280 DFIDR 284
>sp|O74267|GLY1_ASHGO Low-specificity L-threonine aldolase OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=GLY1 PE=3 SV=3
Length = 382
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 48/66 (72%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65
++KA C E+++ +H DGAR++NA++ G+PL + D++ CLSK +GAP+GSIL G
Sbjct: 168 RIKAWCMENDLRLHCDGARIWNASAESGVPLKQYGELFDSISICLSKSMGAPMGSILVGS 227
Query: 66 EEFIQK 71
+FI+K
Sbjct: 228 HKFIKK 233
>sp|O13940|GLY1_SCHPO Probable low-specificity L-threonine aldolase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gly1 PE=3 SV=1
Length = 376
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 12 QEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71
+ H IP+H DGAR+++AA + + E C+ D+V CLSKGL APVGSI+ GP +FI K
Sbjct: 186 KAHKIPLHCDGARLWDAAVASNVSIKEYCSYFDSVSLCLSKGLAAPVGSIIVGPRDFIAK 245
>sp|P37303|GLY1_YEAST Low specificity L-threonine aldolase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GLY1 PE=1 SV=2
Length = 387
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 47/66 (71%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65
++KA C E+ + +H DGAR++NAA+ G+PL + D++ CLSK +GAP+GS+L G
Sbjct: 167 RIKAWCMENGLKLHCDGARIWNAAAQSGVPLKQYGEIFDSISICLSKSMGAPIGSVLVGN 226
Query: 66 EEFIQK 71
+F++K
Sbjct: 227 LKFVKK 232
>sp|O07051|LTAA_AERJA L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1
Length = 338
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65
+++ EH + +H+DGAR+FNA G + E+ A D+V CLSKGLGAPVGS+L G
Sbjct: 153 EMRELVDEHGLQLHLDGARLFNAVVASGHTVRELVAPFDSVSICLSKGLGAPVGSLLVGS 212
Query: 66 EEFIQK 71
FI +
Sbjct: 213 HAFIAR 218
>sp|P75823|LTAE_ECOLI Low specificity L-threonine aldolase OS=Escherichia coli (strain
K12) GN=ltaE PE=1 SV=1
Length = 333
Score = 65.9 bits (159), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 12 QEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71
+E N+ +H+DGAR+FNA G L E+ D+ CLSKGLG PVGS+L G ++I++
Sbjct: 157 RERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKR 216
>sp|P58319|LTAE_ECO57 Low specificity L-threonine aldolase OS=Escherichia coli O157:H7
GN=ltaE PE=3 SV=1
Length = 333
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 12 QEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71
+E N+ +H+DGAR+FNA G L E+ D+ CLSKGLG PVGS+L G ++I++
Sbjct: 157 RERNLALHVDGARIFNAVVAYGSELKELTQYCDSFTICLSKGLGTPVGSLLVGNRDYIKR 216
>sp|Q9UW18|TOXG_COCCA Alanine racemase TOXG OS=Cochliobolus carbonum GN=TOXG PE=3 SV=1
Length = 389
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 12 QEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71
+++N+ H+DGAR+F A + L E C+ +D V SK LGAP+G+++ G ++ IQ+
Sbjct: 195 KQNNVRTHLDGARLFEAVATGAGTLKEYCSLIDLVSVDFSKNLGAPMGAMILGDKKLIQQ 254
>sp|Q9HTF1|LTAE_PSEAE Low specificity L-threonine aldolase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=ltaE PE=3 SV=1
Length = 346
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 7 LKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC--ASVDTVMFCLSKGLGAPVGSIL 62
+ A C+E + +HMDGAR NA ++LG AE+ A VD + F +K G VG +
Sbjct: 160 ISATCKELGLHLHMDGARFSNACAFLGCSPAELSWKAGVDVLCFGGTKN-GMAVGEAI 216
>sp|O50584|LTAE_PSEUN Low specificity L-threonine aldolase OS=Pseudomonas sp. (strain
NCIMB 10558) GN=ltaE PE=1 SV=1
Length = 346
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 7 LKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC--ASVDTVMFCLSKGLGAPVGSIL 62
+ A C+E + +HMDGAR NA ++LG AE+ A +D + F +K G VG +
Sbjct: 160 ISATCKELGLNLHMDGARFSNACAFLGCTPAELTWKAGIDVLCFGGTKN-GMAVGEAI 216
>sp|Q3AB61|SELA_CARHZ L-seryl-tRNA(Sec) selenium transferase OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=selA PE=3
SV=1
Length = 466
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 12 QEHNIPVHMD--GARVFNAASYLGLP----LAEVCAS-VDTVMFCLSKGLGAPVGSILAG 64
+E IPV D + + SY GLP + EV A+ VD V F K LG P I+AG
Sbjct: 248 KEKGIPVMWDLGSGSLVDLTSY-GLPYEPTVQEVLAAGVDVVTFSGDKLLGGPQAGIIAG 306
Query: 65 PEEFIQK 71
+EF+ K
Sbjct: 307 KKEFVAK 313
>sp|Q8RYL1|LCB2B_ORYSJ Long chain base biosynthesis protein 2b OS=Oryza sativa subsp.
japonica GN=Os01g0928600 PE=2 SV=1
Length = 499
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 5 PQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC----ASVDTVMFCLSKGLGAPVGS 60
P++ + C+++ + +MD A A G + E+ A VD +M LSK G+ G
Sbjct: 271 PEIISVCKKYKVYTYMDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTLSKSFGSS-GG 329
Query: 61 ILAGPEEFIQ 70
+A +E IQ
Sbjct: 330 YIAASKEIIQ 339
>sp|Q39ZL4|SELA_GEOMG L-seryl-tRNA(Sec) selenium transferase OS=Geobacter metallireducens
(strain GS-15 / ATCC 53774 / DSM 7210) GN=selA PE=3 SV=1
Length = 462
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 6 QLKARCQEHNIPVHMD-GARVFNAASYLGL---PLAE--VCASVDTVMFCLSKGLGAPVG 59
+L A +EH++PV D G+ S G+ P + V A VD + F K LG P
Sbjct: 240 ELVAIGKEHSVPVMADIGSGCLLDLSPFGIRGEPTVQEFVKAGVDVITFSGDKLLGGPQA 299
Query: 60 SILAGPEEFI 69
I+ G EFI
Sbjct: 300 GIIVGRREFI 309
>sp|A6NE52|K1875_HUMAN WD repeat-containing protein KIAA1875 OS=Homo sapiens GN=KIAA1875
PE=2 SV=2
Length = 1622
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 18 VHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEE 67
+H+ A A ++ LP VCA D ++ LS G V S+L PE+
Sbjct: 426 LHVQVAPALPAPAHQSLPTRLVCACADGSVYLLSAATGRIVSSLLLEPED 475
>sp|P37188|PTKB_ECOLI Galactitol-specific phosphotransferase enzyme IIB component
OS=Escherichia coli (strain K12) GN=gatB PE=1 SV=2
Length = 94
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYL-GLPLAEVCASVD 44
++K CQ HNIPV + RV +Y+ G+ L A VD
Sbjct: 22 EIKELCQNHNIPVELIQCRVNEIETYMDGVHLICTTAKVD 61
>sp|P0A437|PTKB_SHIFL Galactitol-specific phosphotransferase enzyme IIB component
OS=Shigella flexneri GN=gatB PE=3 SV=1
Length = 94
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYL-GLPLAEVCASVD 44
++K CQ HNIPV + RV +Y+ G+ L A VD
Sbjct: 22 EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVD 61
>sp|P0A435|PTKB_ECOL6 Galactitol-specific phosphotransferase enzyme IIB component
OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928
/ UPEC) GN=gatB PE=1 SV=1
Length = 94
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYL-GLPLAEVCASVD 44
++K CQ HNIPV + RV +Y+ G+ L A VD
Sbjct: 22 EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVD 61
>sp|P0A436|PTKB_ECO57 Galactitol-specific phosphotransferase enzyme IIB component
OS=Escherichia coli O157:H7 GN=gatB PE=3 SV=1
Length = 94
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYL-GLPLAEVCASVD 44
++K CQ HNIPV + RV +Y+ G+ L A VD
Sbjct: 22 EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVD 61
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,668,503
Number of Sequences: 539616
Number of extensions: 842817
Number of successful extensions: 1874
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1861
Number of HSP's gapped (non-prelim): 19
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)