Query psy15462
Match_columns 71
No_of_seqs 129 out of 1029
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 21:41:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1368|consensus 99.9 6.6E-25 1.4E-29 153.6 1.7 71 1-71 174-244 (384)
2 COG2008 GLY1 Threonine aldolas 99.9 3.7E-24 7.9E-29 150.8 4.6 71 1-71 149-219 (342)
3 PF01212 Beta_elim_lyase: Beta 99.9 2.1E-24 4.5E-29 149.0 2.2 69 2-70 145-213 (290)
4 TIGR02617 tnaA_trp_ase tryptop 99.8 3.2E-21 7E-26 140.1 5.9 67 1-67 203-281 (467)
5 PF03841 SelA: L-seryl-tRNA se 99.7 5.4E-17 1.2E-21 115.5 3.9 69 3-71 158-232 (367)
6 TIGR02618 tyr_phenol_ly tyrosi 99.7 1.3E-16 2.8E-21 116.1 4.9 70 2-71 191-273 (450)
7 PRK13237 tyrosine phenol-lyase 99.5 6.4E-15 1.4E-19 107.5 4.6 69 2-70 198-279 (460)
8 COG1921 SelA Selenocysteine sy 99.5 1.3E-14 2.9E-19 104.2 4.8 66 3-71 175-242 (395)
9 COG0520 csdA Selenocysteine ly 99.4 1.8E-13 3.8E-18 98.3 6.0 65 2-71 179-244 (405)
10 PRK04311 selenocysteine syntha 99.4 2.9E-13 6.3E-18 98.7 5.9 68 3-70 238-311 (464)
11 TIGR00474 selA seryl-tRNA(sec) 99.4 3.1E-13 6.8E-18 98.3 5.8 68 3-70 233-306 (454)
12 cd00617 Tnase_like Tryptophana 99.4 4.8E-13 1E-17 96.8 5.1 69 2-70 173-254 (431)
13 PLN02590 probable tyrosine dec 99.4 7.2E-13 1.6E-17 98.2 6.1 64 1-66 303-371 (539)
14 PLN02721 threonine aldolase 99.4 9.6E-13 2.1E-17 89.9 5.4 69 2-70 158-226 (353)
15 PF00282 Pyridoxal_deC: Pyrido 99.3 1.2E-12 2.6E-17 93.0 5.1 66 1-68 210-280 (373)
16 PLN03032 serine decarboxylase; 99.3 1.6E-12 3.4E-17 92.7 5.5 70 1-70 177-253 (374)
17 TIGR03799 NOD_PanD_pyr putativ 99.3 2E-12 4.3E-17 95.4 5.9 66 1-68 281-351 (522)
18 TIGR01437 selA_rel uncharacter 99.3 4.1E-12 8.9E-17 89.3 6.2 61 2-70 166-227 (363)
19 PRK13238 tnaA tryptophanase/L- 99.3 3.2E-12 6.8E-17 92.9 5.3 69 2-70 198-279 (460)
20 PRK02769 histidine decarboxyla 99.3 2.5E-12 5.3E-17 91.6 4.6 70 1-70 176-250 (380)
21 PLN02880 tyrosine decarboxylas 99.3 3.3E-12 7.3E-17 93.4 5.4 61 1-63 255-319 (490)
22 cd06502 TA_like Low-specificit 99.3 3.5E-12 7.7E-17 86.7 5.1 69 2-70 146-214 (338)
23 COG3033 TnaA Tryptophanase [Am 99.2 1.5E-11 3.2E-16 88.6 4.3 67 1-67 205-283 (471)
24 COG0076 GadB Glutamate decarbo 99.2 2.6E-11 5.7E-16 88.5 5.4 67 1-67 223-293 (460)
25 PTZ00094 serine hydroxymethylt 99.2 2.9E-11 6.3E-16 87.1 5.0 66 2-69 197-262 (452)
26 TIGR01788 Glu-decarb-GAD gluta 99.2 5.1E-11 1.1E-15 86.2 6.1 66 1-66 202-276 (431)
27 COG1104 NifS Cysteine sulfinat 99.2 5.2E-11 1.1E-15 85.6 5.1 59 1-66 157-217 (386)
28 PLN02263 serine decarboxylase 99.1 1.1E-10 2.4E-15 85.6 5.9 68 1-68 244-318 (470)
29 PLN02651 cysteine desulfurase 99.1 1.2E-10 2.5E-15 81.1 5.5 62 2-69 155-217 (364)
30 PLN03226 serine hydroxymethylt 99.1 1E-10 2.2E-15 85.5 5.2 65 3-69 199-263 (475)
31 cd01494 AAT_I Aspartate aminot 99.1 2.8E-10 6E-15 69.6 5.4 61 3-65 110-170 (170)
32 cd06453 SufS_like Cysteine des 99.1 2.6E-10 5.5E-15 78.9 5.1 64 2-70 156-219 (373)
33 PRK09331 Sep-tRNA:Cys-tRNA syn 99.0 5.6E-10 1.2E-14 78.6 5.8 65 1-70 174-239 (387)
34 TIGR03531 selenium_SpcS O-phos 99.0 5.2E-10 1.1E-14 81.5 5.6 64 1-70 221-293 (444)
35 KOG1549|consensus 99.0 3.7E-10 8.1E-15 82.0 4.6 61 1-66 197-257 (428)
36 PRK13034 serine hydroxymethylt 99.0 4.4E-10 9.5E-15 80.4 4.5 65 3-69 184-248 (416)
37 PRK10534 L-threonine aldolase; 99.0 4.1E-10 9E-15 77.1 4.1 69 2-70 147-215 (333)
38 PRK13580 serine hydroxymethylt 99.0 5.3E-10 1.1E-14 82.5 4.6 68 2-70 235-304 (493)
39 TIGR03235 DNA_S_dndA cysteine 99.0 1E-09 2.2E-14 75.8 5.6 62 2-68 155-216 (353)
40 TIGR02326 transamin_PhnW 2-ami 99.0 8.1E-10 1.8E-14 76.5 5.0 64 2-70 146-210 (363)
41 TIGR03812 tyr_de_CO2_Arch tyro 99.0 1.6E-09 3.6E-14 74.8 6.1 69 2-70 170-245 (373)
42 PRK05968 hypothetical protein; 99.0 6.6E-10 1.4E-14 78.9 4.2 63 2-70 164-229 (389)
43 PF00266 Aminotran_5: Aminotra 99.0 7.4E-10 1.6E-14 77.0 4.4 63 2-70 156-219 (371)
44 TIGR01814 kynureninase kynuren 98.9 1.3E-09 2.8E-14 77.0 5.2 60 2-66 188-248 (406)
45 cd06452 SepCysS Sep-tRNA:Cys-t 98.9 2.8E-09 6.2E-14 74.0 6.1 64 2-70 156-220 (361)
46 PRK06767 methionine gamma-lyas 98.9 1.4E-09 3E-14 77.1 4.5 63 2-70 163-228 (386)
47 TIGR01979 sufS cysteine desulf 98.9 2.2E-09 4.8E-14 75.1 5.5 64 2-70 176-239 (403)
48 TIGR02006 IscS cysteine desulf 98.9 2.3E-09 5.1E-14 75.6 5.5 62 2-68 159-220 (402)
49 TIGR01328 met_gam_lyase methio 98.9 1.3E-09 2.8E-14 77.6 4.3 63 2-70 161-226 (391)
50 PRK05613 O-acetylhomoserine am 98.9 2.6E-09 5.6E-14 77.4 5.8 60 2-67 172-234 (437)
51 TIGR01977 am_tr_V_EF2568 cyste 98.9 2.9E-09 6.2E-14 73.6 5.7 61 2-67 154-216 (376)
52 cd06451 AGAT_like Alanine-glyo 98.9 1.4E-09 3.1E-14 74.7 4.1 63 2-70 141-205 (356)
53 TIGR03811 tyr_de_CO2_Ent tyros 98.9 2.7E-09 5.9E-14 80.3 5.7 66 1-68 294-401 (608)
54 TIGR01976 am_tr_V_VC1184 cyste 98.9 2.4E-09 5.3E-14 74.7 5.2 63 2-70 173-235 (397)
55 TIGR01822 2am3keto_CoA 2-amino 98.9 1.8E-09 3.9E-14 75.2 4.5 69 2-70 187-258 (393)
56 PRK13520 L-tyrosine decarboxyl 98.9 3.5E-09 7.6E-14 72.9 5.6 69 2-70 168-240 (371)
57 cd06450 DOPA_deC_like DOPA dec 98.9 1.8E-09 4E-14 73.7 4.1 58 1-60 164-224 (345)
58 PLN02271 serine hydroxymethylt 98.9 2.7E-09 5.9E-14 80.0 5.1 63 3-67 314-376 (586)
59 cd00613 GDC-P Glycine cleavage 98.9 3.7E-09 8.1E-14 73.6 5.5 63 3-70 177-244 (398)
60 PRK00011 glyA serine hydroxyme 98.9 1.8E-09 3.9E-14 76.2 3.9 67 2-70 180-247 (416)
61 cd00378 SHMT Serine-glycine hy 98.9 3.1E-09 6.6E-14 74.4 4.8 67 2-70 176-243 (402)
62 PRK04366 glycine dehydrogenase 98.9 2.2E-09 4.8E-14 78.1 4.2 64 2-70 225-295 (481)
63 TIGR03392 FeS_syn_CsdA cystein 98.9 5E-09 1.1E-13 73.5 5.4 64 2-70 174-237 (398)
64 TIGR03301 PhnW-AepZ 2-aminoeth 98.9 3.7E-09 8.1E-14 72.1 4.6 64 2-70 142-206 (355)
65 PRK08574 cystathionine gamma-s 98.9 3.5E-09 7.6E-14 75.3 4.6 62 3-70 155-220 (385)
66 cd00614 CGS_like CGS_like: Cys 98.8 3.6E-09 7.9E-14 74.3 4.4 63 2-70 142-208 (369)
67 PRK07504 O-succinylhomoserine 98.8 4.6E-09 1E-13 74.9 4.8 62 3-70 168-232 (398)
68 TIGR01324 cysta_beta_ly_B cyst 98.8 3.3E-09 7.3E-14 75.4 4.1 63 2-70 152-217 (377)
69 PRK10874 cysteine sulfinate de 98.8 6.1E-09 1.3E-13 73.1 5.3 64 2-70 177-240 (401)
70 TIGR03403 nifS_epsilon cystein 98.8 8.1E-09 1.8E-13 72.1 5.7 61 2-67 157-217 (382)
71 PRK09295 bifunctional cysteine 98.8 5.6E-09 1.2E-13 73.6 4.9 64 2-70 181-244 (406)
72 PLN02855 Bifunctional selenocy 98.8 7.9E-09 1.7E-13 73.3 5.3 64 2-70 190-253 (424)
73 TIGR01325 O_suc_HS_sulf O-succ 98.8 5.8E-09 1.3E-13 73.8 4.6 63 2-70 156-221 (380)
74 PRK03080 phosphoserine aminotr 98.8 2E-09 4.3E-14 75.9 2.0 60 2-70 153-213 (378)
75 PRK13479 2-aminoethylphosphona 98.8 7.9E-09 1.7E-13 71.6 4.9 63 2-70 148-212 (368)
76 PRK07050 cystathionine beta-ly 98.8 6.6E-09 1.4E-13 74.1 4.5 63 2-70 167-233 (394)
77 PLN02724 Molybdenum cofactor s 98.8 7.5E-09 1.6E-13 79.4 5.1 64 2-70 209-281 (805)
78 PLN02409 serine--glyoxylate am 98.8 5.3E-09 1.1E-13 74.2 3.8 63 2-70 154-220 (401)
79 TIGR03402 FeS_nifS cysteine de 98.8 1E-08 2.2E-13 71.4 5.0 61 2-68 153-214 (379)
80 PRK08134 O-acetylhomoserine am 98.8 1.4E-08 3E-13 73.5 5.9 58 2-65 166-226 (433)
81 PRK07503 methionine gamma-lyas 98.8 7E-09 1.5E-13 74.1 4.2 63 2-70 167-232 (403)
82 PRK14012 cysteine desulfurase; 98.8 1.2E-08 2.6E-13 71.9 5.3 60 2-67 161-221 (404)
83 PRK08249 cystathionine gamma-s 98.8 1.1E-08 2.3E-13 73.2 4.6 63 2-70 166-231 (398)
84 PRK07811 cystathionine gamma-s 98.8 1.1E-08 2.4E-13 72.7 4.5 62 2-69 163-228 (388)
85 PRK09028 cystathionine beta-ly 98.7 7.7E-09 1.7E-13 74.2 3.6 62 2-69 163-227 (394)
86 PRK08133 O-succinylhomoserine 98.7 1.2E-08 2.7E-13 72.5 4.5 63 2-70 163-228 (390)
87 TIGR01329 cysta_beta_ly_E cyst 98.7 1.4E-08 3E-13 72.0 4.6 61 2-68 148-212 (378)
88 cd00615 Orn_deC_like Ornithine 98.7 4.3E-09 9.3E-14 71.8 2.0 65 2-67 170-236 (294)
89 PLN03227 serine palmitoyltrans 98.7 1.6E-08 3.4E-13 71.9 4.7 67 3-70 156-227 (392)
90 PRK07810 O-succinylhomoserine 98.7 1.8E-08 3.8E-13 72.2 4.9 62 3-70 173-237 (403)
91 PLN02414 glycine dehydrogenase 98.7 2.4E-08 5.1E-13 78.6 6.0 64 2-70 683-753 (993)
92 cd06454 KBL_like KBL_like; thi 98.7 1.4E-08 2.9E-13 69.3 4.0 68 2-70 149-219 (349)
93 PRK07269 cystathionine gamma-s 98.7 1.6E-08 3.4E-13 71.6 4.2 63 2-70 153-219 (364)
94 PRK08114 cystathionine beta-ly 98.7 2.3E-08 5E-13 72.0 4.8 62 2-69 164-230 (395)
95 KOG0629|consensus 98.7 1E-08 2.2E-13 75.1 2.8 60 1-62 269-332 (510)
96 PRK06939 2-amino-3-ketobutyrat 98.7 2.8E-08 6E-13 68.9 4.6 69 2-70 191-262 (397)
97 PRK07812 O-acetylhomoserine am 98.7 5.3E-08 1.1E-12 70.7 5.9 59 2-66 172-233 (436)
98 PRK06176 cystathionine gamma-s 98.7 2.3E-08 5E-13 71.0 3.8 62 2-69 151-216 (380)
99 PRK07671 cystathionine beta-ly 98.7 3.8E-08 8.3E-13 69.8 4.9 63 2-70 151-217 (377)
100 TIGR02539 SepCysS Sep-tRNA:Cys 98.7 7.1E-08 1.5E-12 67.5 6.0 65 2-71 163-228 (370)
101 PRK06460 hypothetical protein; 98.6 3.8E-08 8.3E-13 69.7 4.6 62 3-70 148-212 (376)
102 PRK05994 O-acetylhomoserine am 98.6 6.7E-08 1.5E-12 69.6 5.9 57 3-65 166-225 (427)
103 PLN02242 methionine gamma-lyas 98.6 6.1E-08 1.3E-12 69.8 5.5 62 2-70 180-244 (418)
104 PRK07179 hypothetical protein; 98.6 5.1E-08 1.1E-12 68.8 4.9 68 2-70 198-268 (407)
105 PLN02509 cystathionine beta-ly 98.6 5.8E-08 1.3E-12 71.1 5.0 60 2-67 234-296 (464)
106 PF00464 SHMT: Serine hydroxym 98.6 6.8E-08 1.5E-12 69.9 5.0 61 3-65 185-245 (399)
107 COG3977 Alanine-alpha-ketoisov 98.6 3.6E-08 7.9E-13 70.2 3.3 60 2-70 199-268 (417)
108 PRK05367 glycine dehydrogenase 98.6 1.1E-07 2.3E-12 74.7 6.2 62 2-68 657-725 (954)
109 PRK08248 O-acetylhomoserine am 98.6 1.5E-07 3.2E-12 68.1 6.4 60 2-67 166-228 (431)
110 PRK02948 cysteine desulfurase; 98.6 8.6E-08 1.9E-12 66.8 5.0 62 2-68 155-216 (381)
111 TIGR01326 OAH_OAS_sulfhy OAH/O 98.6 1.2E-07 2.7E-12 67.9 5.7 61 2-68 159-222 (418)
112 PRK11658 UDP-4-amino-4-deoxy-L 98.6 4.8E-08 1E-12 69.0 3.4 66 2-70 135-201 (379)
113 PRK08776 cystathionine gamma-s 98.6 7.5E-08 1.6E-12 69.0 4.3 63 2-70 162-228 (405)
114 PRK06084 O-acetylhomoserine am 98.6 1.6E-07 3.5E-12 67.7 5.9 58 3-66 161-221 (425)
115 PRK07582 cystathionine gamma-l 98.6 8.5E-08 1.9E-12 67.6 4.3 63 2-70 149-215 (366)
116 PRK06234 methionine gamma-lyas 98.6 9.2E-08 2E-12 68.2 4.5 63 2-70 166-233 (400)
117 PRK12566 glycine dehydrogenase 98.5 1.3E-07 2.9E-12 74.2 5.2 52 2-58 658-710 (954)
118 TIGR03588 PseC UDP-4-keto-6-de 98.5 1.4E-07 3.1E-12 66.1 4.6 66 2-69 135-203 (380)
119 PRK08861 cystathionine gamma-s 98.5 1.5E-07 3.2E-12 67.4 4.7 60 3-68 156-219 (388)
120 cd00616 AHBA_syn 3-amino-5-hyd 98.5 1.4E-07 3.1E-12 64.4 4.0 64 2-69 120-186 (352)
121 COG2873 MET17 O-acetylhomoseri 98.5 2.9E-07 6.3E-12 66.6 5.5 56 3-64 165-223 (426)
122 PRK08064 cystathionine beta-ly 98.5 1.9E-07 4.1E-12 66.4 4.2 63 2-70 155-221 (390)
123 PRK08045 cystathionine gamma-s 98.5 2E-07 4.4E-12 66.4 4.2 62 3-70 155-220 (386)
124 PLN02483 serine palmitoyltrans 98.5 2.8E-07 6.1E-12 67.5 5.0 68 2-70 257-328 (489)
125 PRK08247 cystathionine gamma-s 98.5 1.9E-07 4.2E-12 65.7 3.9 63 2-70 153-219 (366)
126 TIGR00461 gcvP glycine dehydro 98.4 4.6E-07 1E-11 71.2 6.0 63 3-69 646-714 (939)
127 PRK05367 glycine dehydrogenase 98.4 5.1E-07 1.1E-11 71.0 5.9 64 2-70 222-290 (954)
128 TIGR03576 pyridox_MJ0158 pyrid 98.4 4.9E-07 1.1E-11 63.6 4.9 67 2-70 155-222 (346)
129 PRK05939 hypothetical protein; 98.4 6E-07 1.3E-11 64.3 4.9 58 2-65 148-208 (397)
130 TIGR00858 bioF 8-amino-7-oxono 98.4 6E-07 1.3E-11 61.2 4.5 68 2-70 163-234 (360)
131 COG0112 GlyA Glycine/serine hy 98.4 3.5E-07 7.7E-12 66.3 3.4 64 3-68 182-246 (413)
132 KOG0628|consensus 98.3 1.8E-07 4E-12 68.9 1.7 64 1-66 251-319 (511)
133 cd00609 AAT_like Aspartate ami 98.3 3.4E-07 7.4E-12 61.6 2.8 67 2-70 152-225 (350)
134 TIGR02080 O_succ_thio_ly O-suc 98.3 7.8E-07 1.7E-11 63.3 4.5 62 3-70 154-219 (382)
135 PRK06434 cystathionine gamma-l 98.3 1.4E-06 3.1E-11 62.4 5.2 59 2-68 165-227 (384)
136 PRK09064 5-aminolevulinate syn 98.3 1.4E-06 3.1E-11 61.4 4.7 68 2-70 195-265 (407)
137 TIGR01366 serC_3 phosphoserine 98.3 4.4E-07 9.5E-12 63.9 2.0 58 3-70 146-204 (361)
138 PLN02414 glycine dehydrogenase 98.3 2.3E-06 5.1E-11 67.6 6.1 63 2-70 250-318 (993)
139 TIGR01825 gly_Cac_T_rel pyrido 98.3 1.2E-06 2.5E-11 60.9 3.9 68 2-70 180-250 (385)
140 PRK06702 O-acetylhomoserine am 98.2 3.6E-06 7.7E-11 61.3 6.5 55 3-65 165-224 (432)
141 PRK05958 8-amino-7-oxononanoat 98.2 1.6E-06 3.5E-11 59.8 4.5 68 2-70 185-256 (385)
142 PRK05967 cystathionine beta-ly 98.2 1.4E-06 3.1E-11 62.7 4.3 62 2-69 166-230 (395)
143 TIGR01821 5aminolev_synth 5-am 98.2 1.9E-06 4.2E-11 60.7 4.4 68 2-70 194-264 (402)
144 PLN02822 serine palmitoyltrans 98.2 2.8E-06 6.1E-11 62.1 5.0 68 2-70 262-333 (481)
145 PRK13392 5-aminolevulinate syn 98.2 1.6E-06 3.5E-11 61.3 3.4 67 3-70 196-265 (410)
146 PF01053 Cys_Met_Meta_PP: Cys/ 98.2 3E-06 6.5E-11 60.9 4.6 62 2-69 157-224 (386)
147 PRK05937 8-amino-7-oxononanoat 98.2 3.9E-06 8.4E-11 58.8 4.9 63 2-68 160-227 (370)
148 PRK06225 aspartate aminotransf 98.1 5.1E-06 1.1E-10 58.1 4.6 66 2-70 177-245 (380)
149 PRK00451 glycine dehydrogenase 98.1 1.7E-06 3.6E-11 61.8 2.2 62 2-70 220-288 (447)
150 TIGR02379 ECA_wecE TDP-4-keto- 98.1 6.5E-06 1.4E-10 58.4 4.4 65 2-70 133-201 (376)
151 KOG0053|consensus 98.0 6.3E-06 1.4E-10 60.0 4.3 60 2-69 179-244 (409)
152 PRK13393 5-aminolevulinate syn 98.0 8.5E-06 1.8E-10 57.6 4.6 68 2-70 194-264 (406)
153 cd00611 PSAT_like Phosphoserin 98.0 6.9E-06 1.5E-10 57.5 3.4 56 9-71 157-212 (355)
154 PRK11706 TDP-4-oxo-6-deoxy-D-g 98.0 8.3E-06 1.8E-10 57.4 3.7 65 2-70 133-200 (375)
155 PF01276 OKR_DC_1: Orn/Lys/Arg 97.9 3.3E-06 7.2E-11 61.5 0.7 64 3-68 185-257 (417)
156 TIGR01364 serC_1 phosphoserine 97.9 7.1E-06 1.5E-10 57.8 2.3 56 9-71 149-204 (349)
157 PF01041 DegT_DnrJ_EryC1: DegT 97.8 2.7E-05 5.8E-10 54.6 4.4 62 2-67 127-190 (363)
158 COG0626 MetC Cystathionine bet 97.8 4.3E-05 9.3E-10 55.5 5.0 62 2-69 166-230 (396)
159 PRK05355 3-phosphoserine/phosp 97.8 1.5E-05 3.3E-10 56.3 2.4 51 14-71 165-215 (360)
160 PRK05764 aspartate aminotransf 97.8 3.7E-05 7.9E-10 53.7 4.2 67 2-70 184-258 (393)
161 PRK07777 aminotransferase; Val 97.8 3.2E-05 6.9E-10 54.2 3.7 67 2-70 179-252 (387)
162 PRK12414 putative aminotransfe 97.8 3E-05 6.4E-10 54.5 3.5 67 2-70 182-255 (384)
163 TIGR01140 L_thr_O3P_dcar L-thr 97.7 2.8E-05 6E-10 53.7 3.1 66 2-70 145-214 (330)
164 PRK07337 aminotransferase; Val 97.7 3.8E-05 8.2E-10 53.8 3.5 67 2-70 183-252 (388)
165 cd00610 OAT_like Acetyl ornith 97.7 4.9E-05 1.1E-09 53.1 4.0 63 3-70 213-279 (413)
166 PRK08361 aspartate aminotransf 97.7 2.4E-05 5.3E-10 54.9 2.2 67 2-70 186-257 (391)
167 PRK07049 methionine gamma-lyas 97.7 6.3E-05 1.4E-09 54.4 4.3 62 3-70 192-262 (427)
168 PRK08175 aminotransferase; Val 97.7 4.8E-05 1E-09 53.6 3.6 67 2-70 184-257 (395)
169 PRK08912 hypothetical protein; 97.7 4.5E-05 9.7E-10 53.5 3.3 67 2-70 179-252 (387)
170 PLN02482 glutamate-1-semialdeh 97.7 7.5E-05 1.6E-09 54.9 4.6 61 2-70 267-333 (474)
171 PLN02955 8-amino-7-oxononanoat 97.7 8E-05 1.7E-09 55.2 4.7 68 2-70 266-336 (476)
172 PF00155 Aminotran_1_2: Aminot 97.7 0.00012 2.5E-09 50.4 5.2 66 2-70 168-241 (363)
173 COG0156 BioF 7-keto-8-aminopel 97.6 8.4E-05 1.8E-09 53.8 4.6 69 1-70 187-259 (388)
174 PRK09276 LL-diaminopimelate am 97.6 4.8E-05 1E-09 53.2 3.2 67 2-70 186-259 (385)
175 PRK07550 hypothetical protein; 97.6 5.7E-05 1.2E-09 52.9 3.6 67 2-70 183-256 (386)
176 PRK06108 aspartate aminotransf 97.6 5.8E-05 1.3E-09 52.4 3.5 67 2-70 178-252 (382)
177 PRK07309 aromatic amino acid a 97.6 9.5E-05 2.1E-09 52.1 4.5 67 2-70 186-257 (391)
178 TIGR03540 DapC_direct LL-diami 97.6 6.6E-05 1.4E-09 52.5 3.7 67 2-70 184-257 (383)
179 TIGR03539 DapC_actino succinyl 97.6 8.6E-05 1.9E-09 51.7 4.2 67 2-70 162-237 (357)
180 PRK09082 methionine aminotrans 97.6 2.6E-05 5.7E-10 54.8 1.5 67 2-70 183-256 (386)
181 COG0399 WecE Predicted pyridox 97.6 9.2E-05 2E-09 53.4 4.3 63 2-66 136-198 (374)
182 TIGR03537 DapC succinyldiamino 97.6 8.8E-05 1.9E-09 51.4 3.9 66 2-70 156-226 (350)
183 PRK07568 aspartate aminotransf 97.6 8.4E-05 1.8E-09 52.0 3.9 67 2-70 182-256 (397)
184 PRK00854 rocD ornithine--oxo-a 97.6 0.0002 4.3E-09 50.4 5.7 64 3-70 209-276 (401)
185 PRK05942 aspartate aminotransf 97.6 0.0001 2.2E-09 52.0 3.9 67 2-70 190-263 (394)
186 PRK08960 hypothetical protein; 97.6 0.00012 2.7E-09 51.3 4.3 65 2-70 185-254 (387)
187 PRK15029 arginine decarboxylas 97.5 8.1E-05 1.8E-09 57.7 3.6 62 2-65 328-400 (755)
188 PRK04073 rocD ornithine--oxo-a 97.5 8.2E-05 1.8E-09 52.6 3.3 64 3-70 208-275 (396)
189 PRK05957 aspartate aminotransf 97.5 0.00011 2.4E-09 51.7 3.7 67 2-70 180-253 (389)
190 PRK07865 N-succinyldiaminopime 97.5 0.00014 3E-09 50.6 4.0 67 2-70 168-243 (364)
191 PRK07324 transaminase; Validat 97.5 0.00013 2.9E-09 51.2 3.9 65 2-70 173-242 (373)
192 PTZ00125 ornithine aminotransf 97.5 0.00013 2.7E-09 51.2 3.7 64 3-70 200-267 (400)
193 PRK15407 lipopolysaccharide bi 97.5 0.00011 2.5E-09 53.3 3.5 62 2-67 173-236 (438)
194 PRK03244 argD acetylornithine 97.5 0.00015 3.2E-09 51.1 3.9 63 3-70 205-271 (398)
195 COG1103 Archaea-specific pyrid 97.5 0.00018 3.9E-09 51.1 4.3 60 2-69 173-236 (382)
196 PF00202 Aminotran_3: Aminotra 97.4 0.00055 1.2E-08 48.0 6.3 60 2-69 198-264 (339)
197 PRK09148 aminotransferase; Val 97.4 0.00018 4E-09 51.0 3.9 67 2-70 185-258 (405)
198 PRK08056 threonine-phosphate d 97.4 0.00018 3.9E-09 50.0 3.6 67 2-70 162-233 (356)
199 PRK02936 argD acetylornithine 97.4 0.00024 5.2E-09 49.6 4.0 64 2-70 188-255 (377)
200 PLN00175 aminotransferase fami 97.4 0.00022 4.7E-09 51.0 3.8 67 2-70 207-279 (413)
201 PRK07683 aminotransferase A; V 97.4 0.00029 6.2E-09 49.6 4.1 67 2-70 181-253 (387)
202 PRK06207 aspartate aminotransf 97.3 0.00023 5E-09 50.6 3.5 67 2-70 198-271 (405)
203 PLN02760 4-aminobutyrate:pyruv 97.3 0.00028 6E-09 52.3 4.0 61 2-70 281-349 (504)
204 PRK07682 hypothetical protein; 97.3 0.00014 2.9E-09 50.8 2.2 67 2-70 174-246 (378)
205 PRK07366 succinyldiaminopimela 97.3 0.00024 5.2E-09 49.8 3.5 67 2-70 185-259 (388)
206 PRK03715 argD acetylornithine 97.3 0.0003 6.5E-09 50.3 3.9 62 2-68 200-265 (395)
207 PRK07681 aspartate aminotransf 97.3 0.00041 8.9E-09 49.0 4.5 67 2-70 186-259 (399)
208 COG1003 GcvP Glycine cleavage 97.3 0.00024 5.1E-09 52.6 3.2 62 2-68 221-289 (496)
209 PRK08068 transaminase; Reviewe 97.3 0.00032 6.9E-09 49.3 3.8 67 2-70 187-260 (389)
210 TIGR00707 argD acetylornithine 97.3 0.00038 8.2E-09 48.3 4.1 65 2-70 191-258 (379)
211 PRK12389 glutamate-1-semialdeh 97.3 0.00042 9.2E-09 49.9 4.4 60 3-70 222-287 (428)
212 PRK05964 adenosylmethionine--8 97.3 0.00028 6.1E-09 50.5 3.4 64 2-70 221-289 (423)
213 PRK08363 alanine aminotransfer 97.3 0.00054 1.2E-08 48.3 4.7 66 2-69 186-258 (398)
214 COG0436 Aspartate/tyrosine/aro 97.3 0.00036 7.8E-09 50.1 3.7 67 2-70 183-257 (393)
215 PRK08636 aspartate aminotransf 97.2 0.00047 1E-08 48.8 4.1 67 2-70 195-268 (403)
216 PLN02624 ornithine-delta-amino 97.2 0.00043 9.3E-09 50.7 4.0 63 3-70 246-313 (474)
217 PRK07505 hypothetical protein; 97.2 0.00081 1.8E-08 47.6 5.2 67 3-70 197-269 (402)
218 PRK00950 histidinol-phosphate 97.2 0.00037 8E-09 48.1 3.4 64 3-70 176-243 (361)
219 PRK06290 aspartate aminotransf 97.2 0.00045 9.7E-09 49.4 3.8 67 2-70 199-271 (410)
220 PF02347 GDC-P: Glycine cleava 97.2 0.0011 2.3E-08 48.8 5.4 63 1-70 212-281 (429)
221 PRK07036 hypothetical protein; 97.2 0.00089 1.9E-08 49.0 5.0 60 2-69 241-309 (466)
222 TIGR01885 Orn_aminotrans ornit 97.1 0.00069 1.5E-08 47.9 4.2 63 3-70 208-275 (401)
223 PRK02627 acetylornithine amino 97.1 0.00064 1.4E-08 47.5 3.9 64 2-70 203-270 (396)
224 PRK09264 diaminobutyrate--2-ox 97.1 0.0012 2.6E-08 47.5 5.3 62 2-68 219-285 (425)
225 PRK12403 putative aminotransfe 97.1 0.00074 1.6E-08 49.3 4.1 63 2-69 243-310 (460)
226 KOG1359|consensus 97.1 0.00038 8.3E-09 49.9 2.5 66 2-70 210-281 (417)
227 COG0075 Serine-pyruvate aminot 97.1 0.00085 1.8E-08 48.7 4.3 61 1-68 147-210 (383)
228 PRK07590 L,L-diaminopimelate a 97.1 0.0013 2.9E-08 46.6 5.3 67 2-70 196-269 (409)
229 PRK06541 hypothetical protein; 97.1 0.0011 2.3E-08 48.5 4.8 60 2-65 242-306 (460)
230 PRK06062 hypothetical protein; 97.1 0.00062 1.3E-08 49.6 3.3 63 2-69 235-302 (451)
231 PF05889 SLA_LP_auto_ag: Solub 97.1 0.00047 1E-08 50.1 2.7 56 2-65 172-237 (389)
232 TIGR02407 ectoine_ectB diamino 97.0 0.0013 2.8E-08 47.2 4.9 59 2-64 215-278 (412)
233 PRK06348 aspartate aminotransf 97.0 0.00079 1.7E-08 47.3 3.7 67 2-70 182-254 (384)
234 TIGR03542 DAPAT_plant LL-diami 97.0 0.0017 3.7E-08 45.9 5.0 66 2-69 193-265 (402)
235 TIGR01141 hisC histidinol-phos 97.0 0.0012 2.7E-08 45.3 4.0 65 3-70 160-230 (346)
236 PRK07480 putative aminotransfe 97.0 0.0014 3E-08 47.9 4.5 57 2-68 240-306 (456)
237 PRK06836 aspartate aminotransf 97.0 0.0012 2.5E-08 46.7 3.9 65 2-68 188-262 (394)
238 PRK06107 aspartate aminotransf 96.9 0.00067 1.5E-08 48.0 2.6 67 2-70 186-261 (402)
239 PRK05093 argD bifunctional N-s 96.9 0.0015 3.3E-08 46.2 4.4 64 2-70 205-272 (403)
240 KOG2467|consensus 96.9 0.0013 2.7E-08 48.3 3.8 62 3-66 205-266 (477)
241 PRK06425 histidinol-phosphate 96.9 0.0013 2.8E-08 45.5 3.6 67 2-70 142-213 (332)
242 PLN02376 1-aminocyclopropane-1 96.9 0.0034 7.4E-08 46.3 6.0 64 2-67 219-296 (496)
243 PRK07481 hypothetical protein; 96.9 0.0016 3.5E-08 47.4 4.1 60 2-69 234-301 (449)
244 PRK13360 omega amino acid--pyr 96.9 0.0019 4.1E-08 47.0 4.5 63 2-69 236-303 (442)
245 PRK00615 glutamate-1-semialdeh 96.8 0.0015 3.2E-08 47.6 3.8 63 2-70 222-288 (433)
246 PRK01278 argD acetylornithine 96.8 0.0018 3.9E-08 45.5 3.9 64 2-70 196-263 (389)
247 PLN02656 tyrosine transaminase 96.8 0.0018 3.9E-08 46.0 3.9 61 2-64 189-255 (409)
248 TIGR01264 tyr_amTase_E tyrosin 96.8 0.0031 6.8E-08 44.4 5.0 62 2-65 188-255 (401)
249 PRK06358 threonine-phosphate d 96.8 0.0019 4.2E-08 45.0 3.8 67 2-70 161-234 (354)
250 PRK08593 4-aminobutyrate amino 96.8 0.0017 3.7E-08 47.2 3.6 66 2-70 228-295 (445)
251 TIGR03246 arg_catab_astC succi 96.8 0.0023 5E-08 45.5 4.2 64 2-70 200-267 (397)
252 COG0160 GabT 4-aminobutyrate a 96.8 0.0021 4.5E-08 47.5 4.0 65 2-69 243-309 (447)
253 PRK07482 hypothetical protein; 96.8 0.0026 5.7E-08 46.5 4.6 57 2-65 241-305 (461)
254 PRK09440 avtA valine--pyruvate 96.8 0.0027 5.9E-08 44.9 4.5 65 2-70 199-268 (416)
255 PRK06209 glutamate-1-semialdeh 96.7 0.0023 4.9E-08 46.3 4.1 64 2-70 204-270 (431)
256 PRK13578 ornithine decarboxyla 96.7 0.0013 2.8E-08 51.0 2.9 67 2-69 298-373 (720)
257 KOG1383|consensus 96.7 0.0018 3.9E-08 48.2 3.6 69 1-69 234-308 (491)
258 PRK09792 4-aminobutyrate trans 96.7 0.0027 5.9E-08 45.7 4.4 64 2-70 219-286 (421)
259 PRK08360 4-aminobutyrate amino 96.7 0.0028 6E-08 46.1 4.5 63 3-70 226-292 (443)
260 PRK04260 acetylornithine amino 96.7 0.0024 5.2E-08 44.7 4.1 64 2-70 186-253 (375)
261 PRK00062 glutamate-1-semialdeh 96.7 0.0008 1.7E-08 48.4 1.7 63 2-70 218-284 (426)
262 PRK09221 beta alanine--pyruvat 96.7 0.0025 5.5E-08 46.4 4.2 65 2-69 239-306 (445)
263 TIGR01265 tyr_nico_aTase tyros 96.7 0.0053 1.1E-07 43.5 5.8 61 2-64 189-255 (403)
264 PRK09147 succinyldiaminopimela 96.7 0.0025 5.4E-08 44.9 4.0 67 2-70 186-265 (396)
265 PRK03321 putative aminotransfe 96.7 0.0014 3E-08 45.3 2.6 66 3-70 163-236 (352)
266 TIGR00709 dat 2,4-diaminobutyr 96.7 0.0041 8.8E-08 45.1 5.0 59 2-66 227-291 (442)
267 PRK04612 argD acetylornithine 96.7 0.003 6.4E-08 45.5 4.1 63 2-69 208-274 (408)
268 PRK13355 bifunctional HTH-doma 96.6 0.0053 1.2E-07 45.1 5.5 64 2-67 301-372 (517)
269 PRK05965 hypothetical protein; 96.6 0.0039 8.4E-08 45.6 4.7 62 2-69 236-303 (459)
270 TIGR00713 hemL glutamate-1-sem 96.6 0.0011 2.4E-08 47.1 1.8 63 2-70 216-282 (423)
271 PRK11522 putrescine--2-oxoglut 96.6 0.0026 5.7E-08 46.6 3.7 60 2-65 252-316 (459)
272 PLN02452 phosphoserine transam 96.6 0.002 4.3E-08 46.0 2.9 49 16-71 171-219 (365)
273 PRK04013 argD acetylornithine/ 96.6 0.0067 1.5E-07 43.3 5.5 59 3-64 184-244 (364)
274 PRK09265 aminotransferase AlaT 96.6 0.0064 1.4E-07 43.0 5.3 60 2-63 188-253 (404)
275 TIGR03538 DapC_gpp succinyldia 96.6 0.0037 8.1E-08 44.0 4.1 67 2-70 185-264 (393)
276 PRK06943 adenosylmethionine--8 96.5 0.0046 9.9E-08 45.2 4.6 60 2-69 243-310 (453)
277 COG0001 HemL Glutamate-1-semia 96.5 0.0019 4.2E-08 47.5 2.5 62 3-70 222-287 (432)
278 PTZ00376 aspartate aminotransf 96.5 0.0029 6.3E-08 44.8 3.3 66 2-69 196-273 (404)
279 PTZ00433 tyrosine aminotransfe 96.5 0.0029 6.3E-08 45.0 3.3 60 2-63 197-262 (412)
280 PLN00145 tyrosine/nicotianamin 96.5 0.0059 1.3E-07 44.0 4.9 61 2-64 210-276 (430)
281 TIGR00700 GABAtrnsam 4-aminobu 96.5 0.005 1.1E-07 44.2 4.4 63 3-70 219-285 (420)
282 TIGR00461 gcvP glycine dehydro 96.5 0.0084 1.8E-07 47.8 5.8 63 2-70 210-278 (939)
283 PRK05630 adenosylmethionine--8 96.5 0.0025 5.3E-08 46.1 2.7 63 2-69 222-289 (422)
284 PRK06917 hypothetical protein; 96.4 0.0064 1.4E-07 44.3 4.7 63 2-69 221-288 (447)
285 PRK05839 hypothetical protein; 96.4 0.0042 9.2E-08 43.6 3.6 67 2-70 175-252 (374)
286 PRK08742 adenosylmethionine--8 96.4 0.0052 1.1E-07 45.2 4.2 58 2-68 258-324 (472)
287 PRK06082 4-aminobutyrate amino 96.4 0.0065 1.4E-07 44.4 4.6 59 2-64 249-312 (459)
288 PRK07678 aminotransferase; Val 96.4 0.01 2.2E-07 43.2 5.6 60 2-69 234-301 (451)
289 PRK05769 4-aminobutyrate amino 96.4 0.0062 1.4E-07 44.2 4.5 63 2-69 242-308 (441)
290 TIGR03372 putres_am_tran putre 96.4 0.0057 1.2E-07 44.7 4.3 63 2-69 245-312 (442)
291 PRK06938 diaminobutyrate--2-ox 96.3 0.0063 1.4E-07 44.6 4.3 58 2-64 252-314 (464)
292 PRK06918 4-aminobutyrate amino 96.3 0.0076 1.6E-07 43.7 4.6 63 3-70 241-307 (451)
293 PLN00143 tyrosine/nicotianamin 96.3 0.0069 1.5E-07 43.1 4.3 61 2-64 190-256 (409)
294 PLN02368 alanine transaminase 96.3 0.0087 1.9E-07 43.1 4.8 67 2-70 230-315 (407)
295 PLN00144 acetylornithine trans 96.3 0.0094 2E-07 42.4 4.9 63 3-70 189-255 (382)
296 PRK12381 bifunctional succinyl 96.2 0.007 1.5E-07 43.1 4.0 64 2-70 204-271 (406)
297 PRK05664 threonine-phosphate d 96.2 0.0073 1.6E-07 41.7 3.9 65 2-70 144-212 (330)
298 PLN02187 rooty/superroot1 96.2 0.0097 2.1E-07 43.4 4.5 61 2-64 224-290 (462)
299 PRK06058 4-aminobutyrate amino 96.2 0.011 2.3E-07 42.9 4.7 60 2-70 240-307 (443)
300 PLN02397 aspartate transaminas 96.2 0.007 1.5E-07 43.4 3.7 65 2-68 214-290 (423)
301 PLN02231 alanine transaminase 96.2 0.015 3.2E-07 43.5 5.5 67 2-70 291-375 (534)
302 PRK07046 aminotransferase; Val 96.2 0.0077 1.7E-07 44.0 4.0 66 2-70 239-304 (453)
303 PRK06777 4-aminobutyrate amino 96.1 0.0097 2.1E-07 42.9 4.3 64 2-70 219-286 (421)
304 PRK08117 4-aminobutyrate amino 96.1 0.0083 1.8E-07 43.1 4.0 64 2-70 228-295 (433)
305 PLN02974 adenosylmethionine-8- 96.1 0.011 2.4E-07 46.4 4.9 57 2-65 606-670 (817)
306 PLN02450 1-aminocyclopropane-1 96.1 0.008 1.7E-07 43.9 3.9 65 2-68 211-290 (468)
307 PRK08297 L-lysine aminotransfe 96.1 0.0065 1.4E-07 44.2 3.3 59 2-66 246-306 (443)
308 PRK07483 hypothetical protein; 96.1 0.0083 1.8E-07 43.7 3.8 59 2-68 221-287 (443)
309 PRK05387 histidinol-phosphate 96.0 0.011 2.5E-07 40.6 4.1 63 4-70 163-230 (353)
310 TIGR03251 LAT_fam L-lysine 6-t 96.0 0.0092 2E-07 43.2 3.6 56 2-66 239-299 (431)
311 PRK03158 histidinol-phosphate 95.9 0.012 2.6E-07 40.7 4.0 65 4-70 170-242 (359)
312 PTZ00377 alanine aminotransfer 95.9 0.02 4.2E-07 41.8 5.1 67 2-70 238-323 (481)
313 PRK07495 4-aminobutyrate amino 95.9 0.01 2.2E-07 42.9 3.7 64 2-70 219-286 (425)
314 PRK06855 aminotransferase; Val 95.9 0.033 7.1E-07 40.1 6.1 61 2-64 191-257 (433)
315 PRK09105 putative aminotransfe 95.9 0.0098 2.1E-07 41.9 3.4 65 2-70 185-253 (370)
316 PLN02607 1-aminocyclopropane-1 95.9 0.013 2.9E-07 42.6 4.0 66 2-69 220-299 (447)
317 PRK07030 adenosylmethionine--8 95.9 0.016 3.5E-07 42.5 4.5 60 2-69 236-303 (466)
318 PRK06931 diaminobutyrate--2-ox 95.8 0.014 3.1E-07 42.6 4.1 60 2-67 246-310 (459)
319 PRK02731 histidinol-phosphate 95.8 0.015 3.2E-07 40.3 4.0 65 4-70 173-245 (367)
320 PRK08153 histidinol-phosphate 95.8 0.0075 1.6E-07 42.3 2.5 65 2-70 175-243 (369)
321 PRK14807 histidinol-phosphate 95.8 0.024 5.1E-07 39.4 4.9 64 3-70 166-233 (351)
322 PF06838 Met_gamma_lyase: Meth 95.7 0.0083 1.8E-07 43.8 2.5 60 2-71 175-244 (403)
323 PRK14809 histidinol-phosphate 95.7 0.01 2.2E-07 41.2 2.7 65 2-70 174-242 (357)
324 PRK06105 aminotransferase; Pro 95.7 0.024 5.1E-07 41.5 4.7 63 2-69 239-306 (460)
325 PRK03317 histidinol-phosphate 95.6 0.014 3E-07 40.7 3.2 66 3-70 178-248 (368)
326 PRK08088 4-aminobutyrate amino 95.6 0.021 4.6E-07 41.0 4.1 64 2-70 220-287 (425)
327 PRK06916 adenosylmethionine--8 95.5 0.018 4E-07 42.1 3.7 65 2-69 245-312 (460)
328 PRK07908 hypothetical protein; 95.5 0.029 6.4E-07 38.8 4.5 62 4-70 158-224 (349)
329 KOG1357|consensus 95.5 0.0063 1.4E-07 45.4 1.1 68 2-70 293-364 (519)
330 COG4992 ArgD Ornithine/acetylo 95.4 0.048 1E-06 40.0 5.6 58 2-64 205-267 (404)
331 PRK15481 transcriptional regul 95.3 0.021 4.5E-07 40.8 3.3 66 2-70 232-301 (431)
332 PRK05639 4-aminobutyrate amino 95.3 0.024 5.1E-07 41.6 3.6 63 2-69 243-309 (457)
333 TIGR00508 bioA adenosylmethion 95.2 0.032 7E-07 40.4 4.2 64 2-69 229-296 (427)
334 KOG1360|consensus 95.2 0.0089 1.9E-07 44.5 1.1 65 2-70 320-390 (570)
335 PRK06148 hypothetical protein; 95.1 0.048 1.1E-06 43.6 5.1 63 2-69 805-872 (1013)
336 PRK04781 histidinol-phosphate 95.1 0.027 5.9E-07 39.4 3.4 64 3-70 173-240 (364)
337 KOG3843|consensus 95.1 0.003 6.5E-08 45.0 -1.5 54 1-62 173-235 (432)
338 KOG0257|consensus 95.0 0.027 5.9E-07 41.4 3.2 66 2-69 192-264 (420)
339 PRK06959 putative threonine-ph 95.0 0.037 7.9E-07 38.6 3.7 65 2-70 150-218 (339)
340 KOG1401|consensus 94.8 0.045 9.7E-07 40.4 3.9 59 2-66 227-291 (433)
341 PRK03967 histidinol-phosphate 94.8 0.048 1E-06 37.8 3.9 62 4-70 159-224 (337)
342 COG1168 MalY Bifunctional PLP- 94.8 0.041 8.8E-07 40.2 3.5 65 2-68 178-251 (388)
343 PRK09257 aromatic amino acid a 94.7 0.035 7.7E-07 39.1 3.2 53 2-57 192-251 (396)
344 TIGR01365 serC_2 phosphoserine 94.7 0.019 4E-07 41.3 1.7 50 14-70 154-204 (374)
345 PRK12462 phosphoserine aminotr 94.6 0.026 5.5E-07 40.7 2.2 53 12-71 165-217 (364)
346 PRK07986 adenosylmethionine--8 94.6 0.025 5.5E-07 41.1 2.2 63 2-69 226-293 (428)
347 TIGR03801 asp_4_decarbox aspar 94.5 0.039 8.5E-07 41.4 3.1 64 2-67 260-327 (521)
348 PRK08354 putative aminotransfe 94.5 0.069 1.5E-06 36.6 4.1 58 2-64 137-196 (311)
349 PRK06149 hypothetical protein; 94.5 0.079 1.7E-06 42.1 4.9 63 2-69 765-832 (972)
350 PRK06173 adenosylmethionine--8 94.3 0.054 1.2E-06 39.4 3.4 62 2-68 228-294 (429)
351 PRK09275 aspartate aminotransf 94.2 0.043 9.3E-07 41.2 2.8 64 2-67 261-328 (527)
352 KOG0256|consensus 94.1 0.13 2.8E-06 38.2 5.0 64 2-67 246-320 (471)
353 KOG2040|consensus 93.9 0.048 1.1E-06 42.8 2.6 62 2-68 697-765 (1001)
354 PRK04635 histidinol-phosphate 93.9 0.021 4.6E-07 39.7 0.5 64 4-70 166-234 (354)
355 PRK01688 histidinol-phosphate 93.7 0.017 3.7E-07 40.2 -0.2 65 2-70 165-233 (351)
356 PRK12566 glycine dehydrogenase 93.6 0.17 3.6E-06 40.7 5.1 63 2-70 224-292 (954)
357 PRK05166 histidinol-phosphate 93.4 0.075 1.6E-06 37.2 2.6 65 3-70 180-252 (371)
358 PRK14808 histidinol-phosphate 92.9 0.29 6.2E-06 34.0 5.0 62 4-70 157-222 (335)
359 KOG2862|consensus 92.8 0.092 2E-06 38.0 2.4 57 4-66 162-220 (385)
360 PRK02610 histidinol-phosphate 92.5 0.13 2.9E-06 36.0 2.9 64 2-70 188-254 (374)
361 PRK07392 threonine-phosphate d 92.4 0.31 6.8E-06 33.9 4.6 64 4-70 167-236 (360)
362 PRK15399 lysine decarboxylase 92.2 0.3 6.5E-06 38.2 4.6 61 3-66 314-382 (713)
363 PRK08637 hypothetical protein; 92.1 0.2 4.3E-06 35.3 3.3 60 2-63 166-240 (388)
364 PLN03026 histidinol-phosphate 92.0 0.32 6.9E-06 34.3 4.3 64 3-70 193-260 (380)
365 PLN02672 methionine S-methyltr 91.7 0.16 3.5E-06 41.3 2.8 67 2-70 849-931 (1082)
366 PRK04870 histidinol-phosphate 91.7 0.072 1.6E-06 36.9 0.8 60 3-70 174-237 (356)
367 PRK01533 histidinol-phosphate 91.4 0.086 1.9E-06 37.1 0.9 66 2-70 171-242 (366)
368 COG4100 Cystathionine beta-lya 90.9 0.13 2.8E-06 37.3 1.3 62 2-71 186-255 (416)
369 COG1167 ARO8 Transcriptional r 90.7 0.36 7.8E-06 35.4 3.6 64 4-70 249-318 (459)
370 PF00128 Alpha-amylase: Alpha 90.7 0.22 4.9E-06 32.8 2.3 22 2-23 52-73 (316)
371 COG1982 LdcC Arginine/lysine/o 89.6 0.39 8.5E-06 36.7 3.1 59 3-65 183-246 (557)
372 smart00642 Aamy Alpha-amylase 89.5 0.3 6.6E-06 31.3 2.2 22 2-23 70-91 (166)
373 COG3844 Kynureninase [Amino ac 89.4 0.45 9.7E-06 34.8 3.1 58 3-65 184-244 (407)
374 PRK15400 lysine decarboxylase 89.1 0.58 1.3E-05 36.7 3.7 57 2-62 313-378 (714)
375 KOG3974|consensus 88.0 0.32 6.8E-06 34.4 1.5 26 2-27 119-144 (306)
376 TIGR00699 GABAtrns_euk 4-amino 86.3 0.6 1.3E-05 34.6 2.3 20 2-21 272-291 (464)
377 TIGR00789 flhB_rel flhB C-term 85.6 0.92 2E-05 26.3 2.4 17 5-21 30-46 (82)
378 COG0403 GcvP Glycine cleavage 85.5 2.6 5.6E-05 31.6 5.2 64 2-70 227-295 (450)
379 COG0161 BioA Adenosylmethionin 85.5 0.75 1.6E-05 34.3 2.5 57 2-66 236-301 (449)
380 KOG1405|consensus 85.5 0.72 1.6E-05 34.2 2.3 48 3-52 293-344 (484)
381 cd00287 ribokinase_pfkB_like r 84.4 1.4 3E-05 27.4 3.1 22 2-23 71-92 (196)
382 PRK09441 cytoplasmic alpha-amy 84.0 0.92 2E-05 33.3 2.4 27 2-30 81-107 (479)
383 PRK10785 maltodextrin glucosid 81.9 1.2 2.6E-05 33.8 2.4 22 2-23 226-247 (598)
384 KOG1404|consensus 81.0 0.5 1.1E-05 35.1 0.0 63 2-66 233-297 (442)
385 PLN00196 alpha-amylase; Provis 80.9 1.5 3.2E-05 32.3 2.4 22 2-23 92-113 (428)
386 COG0079 HisC Histidinol-phosph 80.6 1.2 2.7E-05 31.8 1.9 64 2-70 165-232 (356)
387 PRK12313 glycogen branching en 79.2 1.4 3.1E-05 33.6 1.9 22 2-23 220-241 (633)
388 TIGR02402 trehalose_TreZ malto 78.7 1.5 3.3E-05 33.0 1.9 22 2-23 160-181 (542)
389 COG0041 PurE Phosphoribosylcar 78.0 1.5 3.2E-05 28.6 1.5 28 2-29 44-71 (162)
390 cd05564 PTS_IIB_chitobiose_lic 77.5 9.1 0.0002 22.2 4.7 24 4-27 16-39 (96)
391 TIGR02104 pulA_typeI pullulana 77.3 1.7 3.8E-05 33.0 1.9 22 2-23 229-250 (605)
392 TIGR01305 GMP_reduct_1 guanosi 76.5 4.1 8.9E-05 29.5 3.5 41 3-49 200-241 (343)
393 TIGR02403 trehalose_treC alpha 76.4 2.3 4.9E-05 32.0 2.3 22 2-23 75-96 (543)
394 cd05565 PTS_IIB_lactose PTS_II 76.1 11 0.00025 22.3 4.9 39 4-50 17-55 (99)
395 COG1932 SerC Phosphoserine ami 75.9 5.5 0.00012 29.1 4.1 31 41-71 189-219 (365)
396 PRK05402 glycogen branching en 75.9 2 4.3E-05 33.4 1.9 22 2-23 315-336 (726)
397 TIGR01515 branching_enzym alph 75.4 2.1 4.5E-05 32.7 1.9 22 2-23 206-227 (613)
398 PRK09505 malS alpha-amylase; R 75.0 2.6 5.6E-05 32.9 2.4 22 2-23 292-313 (683)
399 cd01167 bac_FRK Fructokinases 74.2 3.3 7.2E-05 27.5 2.5 20 4-23 140-159 (295)
400 PRK03705 glycogen debranching 74.0 2.4 5.2E-05 32.9 1.9 22 2-23 242-263 (658)
401 PRK10933 trehalose-6-phosphate 73.6 3 6.4E-05 31.5 2.3 22 2-23 81-102 (551)
402 PLN02361 alpha-amylase 73.5 3.1 6.6E-05 30.5 2.3 22 2-23 76-97 (401)
403 TIGR02456 treS_nterm trehalose 73.2 3.1 6.7E-05 31.1 2.3 22 2-23 76-97 (539)
404 COG2257 Uncharacterized homolo 72.0 3.1 6.7E-05 24.8 1.7 18 5-22 35-52 (92)
405 PLN02681 proline dehydrogenase 72.0 2.9 6.3E-05 31.1 1.9 23 2-24 220-242 (455)
406 COG0366 AmyA Glycosidases [Car 72.0 3 6.4E-05 29.8 1.9 22 2-23 77-98 (505)
407 PF02638 DUF187: Glycosyl hydr 71.7 3.8 8.3E-05 28.8 2.4 18 2-19 70-87 (311)
408 TIGR02100 glgX_debranch glycog 71.7 2.9 6.2E-05 32.6 1.9 22 2-23 245-266 (688)
409 PF00150 Cellulase: Cellulase 71.6 2.8 6E-05 27.6 1.6 23 2-24 62-84 (281)
410 PRK12721 secretion system appa 70.8 3.8 8.3E-05 29.5 2.3 31 5-35 292-324 (349)
411 PRK13109 flhB flagellar biosyn 70.7 3.8 8.3E-05 29.6 2.3 31 5-35 301-333 (358)
412 PLN02447 1,4-alpha-glucan-bran 70.3 3.4 7.5E-05 32.7 2.1 21 2-22 300-320 (758)
413 KOG0259|consensus 69.9 6.5 0.00014 29.4 3.3 61 3-65 220-287 (447)
414 PF00478 IMPDH: IMP dehydrogen 69.7 11 0.00023 27.4 4.4 40 4-49 200-240 (352)
415 cd00958 DhnA Class I fructose- 69.6 4.6 0.0001 26.6 2.3 21 2-22 109-129 (235)
416 COG1180 PflA Pyruvate-formate 69.4 7.3 0.00016 26.7 3.3 45 2-51 99-143 (260)
417 COG2870 RfaE ADP-heptose synth 69.0 4.9 0.00011 30.2 2.5 20 2-21 158-177 (467)
418 PRK05096 guanosine 5'-monophos 68.5 14 0.00031 26.9 4.7 41 3-49 201-242 (346)
419 KOG1769|consensus 67.8 17 0.00038 21.9 4.3 42 7-53 47-94 (99)
420 cd01940 Fructoselysine_kinase_ 67.3 8.9 0.00019 25.1 3.4 42 3-49 126-167 (264)
421 TIGR01404 FlhB_rel_III type II 67.0 4.9 0.00011 28.8 2.2 31 5-35 291-323 (342)
422 PLN02765 pyruvate kinase 67.0 14 0.00029 28.3 4.6 45 5-51 296-348 (526)
423 PRK14706 glycogen branching en 66.5 4.3 9.4E-05 31.4 1.9 22 2-23 217-238 (639)
424 PTZ00314 inosine-5'-monophosph 66.4 8.8 0.00019 28.8 3.5 42 3-50 332-374 (495)
425 PRK13762 tRNA-modifying enzyme 66.2 12 0.00025 26.5 3.9 41 3-51 146-188 (322)
426 PF05670 DUF814: Domain of unk 66.1 1.2 2.6E-05 25.7 -0.9 65 5-70 20-89 (90)
427 COG0296 GlgB 1,4-alpha-glucan 65.9 4.8 0.0001 31.3 2.1 23 1-23 213-235 (628)
428 PRK06739 pyruvate kinase; Vali 65.7 16 0.00034 26.5 4.5 47 4-51 253-307 (352)
429 PLN02341 pfkB-type carbohydrat 65.7 5.8 0.00013 29.2 2.4 19 4-22 243-261 (470)
430 COG1535 EntB Isochorismate hyd 65.5 4.7 0.0001 27.3 1.7 20 2-21 58-77 (218)
431 COG0352 ThiE Thiamine monophos 65.4 5.5 0.00012 26.8 2.1 20 3-22 53-72 (211)
432 KOG2550|consensus 64.9 7.3 0.00016 29.4 2.8 40 4-48 343-382 (503)
433 PRK06298 type III secretion sy 64.7 5.8 0.00012 28.7 2.2 31 5-35 293-325 (356)
434 TIGR03849 arch_ComA phosphosul 64.5 13 0.00028 25.6 3.8 46 3-50 42-92 (237)
435 TIGR01302 IMP_dehydrog inosine 63.9 13 0.00027 27.4 3.8 41 3-49 315-356 (450)
436 PF03851 UvdE: UV-endonuclease 63.8 6.9 0.00015 27.4 2.4 21 3-23 191-211 (275)
437 cd01174 ribokinase Ribokinase 63.1 21 0.00046 23.6 4.6 21 3-23 143-163 (292)
438 PF14871 GHL6: Hypothetical gl 62.9 9.5 0.00021 23.7 2.7 22 2-23 44-67 (132)
439 PRK13397 3-deoxy-7-phosphohept 62.7 18 0.0004 25.0 4.3 22 2-23 66-87 (250)
440 PLN03244 alpha-amylase; Provis 62.7 5.6 0.00012 32.1 1.9 22 2-23 441-462 (872)
441 PRK09108 type III secretion sy 62.5 7.4 0.00016 28.1 2.4 22 5-26 294-317 (353)
442 KOG1402|consensus 62.5 13 0.00029 27.4 3.7 62 2-65 228-292 (427)
443 PRK12468 flhB flagellar biosyn 62.2 7 0.00015 28.6 2.3 31 5-35 299-331 (386)
444 PRK12568 glycogen branching en 61.8 6 0.00013 31.3 1.9 21 2-22 319-339 (730)
445 PLN02379 pfkB-type carbohydrat 61.6 19 0.0004 25.7 4.3 21 3-23 192-212 (367)
446 PF07498 Rho_N: Rho terminatio 61.2 6.9 0.00015 19.7 1.6 15 3-17 6-20 (43)
447 TIGR02103 pullul_strch alpha-1 61.1 6.6 0.00014 31.8 2.1 27 2-30 404-430 (898)
448 TIGR02152 D_ribokin_bact ribok 61.1 21 0.00046 23.7 4.3 19 4-22 139-157 (293)
449 TIGR00853 pts-lac PTS system, 61.1 31 0.00066 20.1 4.7 22 5-26 21-42 (95)
450 PRK08156 type III secretion sy 61.0 7.8 0.00017 28.1 2.3 31 5-35 287-319 (361)
451 PRK05773 3,4-dihydroxy-2-butan 60.6 11 0.00023 25.7 2.8 25 3-28 192-216 (219)
452 cd00288 Pyruvate_Kinase Pyruva 60.6 23 0.00049 26.7 4.7 48 4-52 261-316 (480)
453 PRK05702 flhB flagellar biosyn 60.0 8.4 0.00018 27.9 2.3 23 5-27 299-323 (359)
454 PRK09206 pyruvate kinase; Prov 59.9 23 0.00051 26.6 4.7 48 4-52 260-315 (470)
455 TIGR01949 AroFGH_arch predicte 59.8 8.2 0.00018 26.1 2.2 20 2-21 123-142 (258)
456 TIGR01361 DAHP_synth_Bsub phos 59.7 21 0.00047 24.5 4.2 22 2-23 76-97 (260)
457 cd03315 MLE_like Muconate lact 59.6 18 0.0004 24.2 3.8 48 2-56 167-216 (265)
458 PLN02543 pfkB-type carbohydrat 59.5 10 0.00022 28.5 2.8 47 4-50 286-335 (496)
459 TIGR00328 flhB flagellar biosy 59.5 8.2 0.00018 27.8 2.2 22 5-26 292-315 (347)
460 PRK08227 autoinducer 2 aldolas 59.4 6.7 0.00014 27.3 1.7 19 2-20 127-145 (264)
461 PF00224 PK: Pyruvate kinase, 59.0 18 0.0004 25.8 3.9 45 5-50 264-316 (348)
462 PF02571 CbiJ: Precorrin-6x re 58.9 12 0.00027 25.5 2.9 22 3-24 54-75 (249)
463 PTZ00247 adenosine kinase; Pro 58.7 16 0.00034 25.4 3.4 46 3-50 176-222 (345)
464 PF02679 ComA: (2R)-phospho-3- 58.6 24 0.00052 24.4 4.3 46 3-50 55-105 (244)
465 PRK12772 bifunctional flagella 58.5 8.4 0.00018 29.7 2.2 31 5-35 555-587 (609)
466 PLN02274 inosine-5'-monophosph 58.4 17 0.00037 27.4 3.8 41 3-49 339-380 (505)
467 PRK07226 fructose-bisphosphate 58.3 8.9 0.00019 26.1 2.1 20 2-21 126-145 (267)
468 PRK07807 inosine 5-monophospha 58.1 12 0.00027 28.0 3.0 41 3-49 318-359 (479)
469 cd01171 YXKO-related B.subtili 58.1 10 0.00022 25.1 2.3 23 3-25 92-114 (254)
470 TIGR02102 pullulan_Gpos pullul 58.0 7.4 0.00016 32.2 1.9 22 2-23 555-576 (1111)
471 COG1377 FlhB Flagellar biosynt 57.6 8.3 0.00018 28.2 1.9 22 5-26 299-322 (363)
472 PRK10076 pyruvate formate lyas 57.5 19 0.00041 24.0 3.5 43 4-51 56-98 (213)
473 PLN02960 alpha-amylase 57.1 8 0.00017 31.4 1.9 22 2-23 466-487 (897)
474 PRK14510 putative bifunctional 56.9 9.4 0.0002 31.8 2.4 22 2-23 247-268 (1221)
475 PRK14705 glycogen branching en 56.7 8 0.00017 32.3 1.9 21 2-22 815-835 (1224)
476 KOG0630|consensus 56.5 8.1 0.00017 30.1 1.8 61 2-62 309-371 (838)
477 PF02037 SAP: SAP domain; Int 56.3 13 0.00027 17.8 2.0 15 4-18 6-20 (35)
478 PLN02813 pfkB-type carbohydrat 56.2 18 0.00038 26.4 3.5 21 4-24 244-264 (426)
479 PRK08057 cobalt-precorrin-6x r 56.0 17 0.00037 24.9 3.2 22 3-24 53-74 (248)
480 PRK06852 aldolase; Validated 56.0 8.2 0.00018 27.4 1.7 19 2-20 154-172 (304)
481 COG1448 TyrB Aspartate/tyrosin 55.8 8.9 0.00019 28.4 1.9 56 2-61 192-258 (396)
482 TIGR03278 methan_mark_10 putat 55.8 17 0.00037 26.7 3.3 45 2-51 89-137 (404)
483 PF01619 Pro_dh: Proline dehyd 55.4 8.3 0.00018 26.9 1.6 22 2-23 92-113 (313)
484 PF01312 Bac_export_2: FlhB Hr 55.4 11 0.00023 27.1 2.2 32 5-36 294-327 (343)
485 PF05913 DUF871: Bacterial pro 55.4 11 0.00023 27.3 2.2 22 2-23 47-68 (357)
486 PRK11142 ribokinase; Provision 55.4 25 0.00053 23.6 3.9 20 4-23 147-166 (306)
487 cd02742 GH20_hexosaminidase Be 55.2 9.6 0.00021 26.4 1.9 19 2-20 72-90 (303)
488 PRK05567 inosine 5'-monophosph 54.6 16 0.00035 27.1 3.1 41 3-49 319-360 (486)
489 PF11020 DUF2610: Domain of un 54.3 5.9 0.00013 23.1 0.6 17 2-18 52-68 (82)
490 PLN02967 kinase 54.2 15 0.00032 28.4 2.9 47 3-49 354-403 (581)
491 COG1830 FbaB DhnA-type fructos 54.1 9.1 0.0002 26.8 1.6 19 2-20 130-148 (265)
492 KOG1358|consensus 54.1 20 0.00043 27.0 3.4 64 2-66 250-317 (467)
493 COG0108 RibB 3,4-dihydroxy-2-b 54.0 14 0.0003 25.0 2.4 18 2-19 172-189 (203)
494 PF00728 Glyco_hydro_20: Glyco 53.9 9.7 0.00021 26.3 1.8 20 2-21 73-92 (351)
495 KOG0186|consensus 53.8 10 0.00022 28.9 1.9 22 2-23 270-291 (506)
496 PTZ00300 pyruvate kinase; Prov 53.6 36 0.00078 25.5 4.8 48 4-52 234-289 (454)
497 PRK05985 cytosine deaminase; P 53.3 9.5 0.00021 26.9 1.7 21 2-22 191-213 (391)
498 PLN02784 alpha-amylase 52.9 12 0.00026 30.4 2.3 22 2-23 568-589 (894)
499 PF01791 DeoC: DeoC/LacD famil 52.6 7.5 0.00016 25.8 1.0 51 2-53 112-170 (236)
500 cd06565 GH20_GcnA-like Glycosy 52.5 11 0.00024 26.2 1.9 19 2-20 60-78 (301)
No 1
>KOG1368|consensus
Probab=99.90 E-value=6.6e-25 Score=153.59 Aligned_cols=71 Identities=48% Similarity=0.911 Sum_probs=68.6
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
++++.++.++|++||+++|+||||+||++.+.|+|+++|++.+|+|++|+||++|+|.|++|||+++||++
T Consensus 174 le~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~k 244 (384)
T KOG1368|consen 174 LEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDK 244 (384)
T ss_pred HHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999974
No 2
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.89 E-value=3.7e-24 Score=150.82 Aligned_cols=71 Identities=45% Similarity=0.805 Sum_probs=68.2
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
+++|++|+++||+||+|||+||||+||++++++++.+++++++|+++||++|++++|.|++|+|+++++++
T Consensus 149 l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~ 219 (342)
T COG2008 149 LDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKR 219 (342)
T ss_pred HHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999864
No 3
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.89 E-value=2.1e-24 Score=149.01 Aligned_cols=69 Identities=46% Similarity=0.694 Sum_probs=64.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+++++|+++||+||++||+||||+||++...+.+++|+++++|+++||++|++|+|.|++|++++++|+
T Consensus 145 ~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~ 213 (290)
T PF01212_consen 145 EELRAISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIA 213 (290)
T ss_dssp HHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHH
T ss_pred HHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEechHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999875
No 4
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=99.84 E-value=3.2e-21 Score=140.11 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=62.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhh--------hCCCCHHHHh----cCCcEEEEcCCCCCccceeEEEEeccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAAS--------YLGLPLAEVC----ASVDTVMFCLSKGLGAPVGSILAGPEE 67 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~--------~~~~~~~~~~----~~~D~v~~s~~K~lg~p~gg~l~g~~~ 67 (71)
++++++++++|++|||++|+||||+|||++ +.+.+++|++ +++|++++|++|++|+|+||+|+|+++
T Consensus 203 lenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg~Lag~d~ 281 (467)
T TIGR02617 203 LANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGGLLCFKDD 281 (467)
T ss_pred HHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccceEEecch
Confidence 468999999999999999999999998774 6899988774 999999999999999999999999987
No 5
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=99.66 E-value=5.4e-17 Score=115.54 Aligned_cols=69 Identities=36% Similarity=0.548 Sum_probs=50.3
Q ss_pred cHHHHHHHHHhcCCcEEEe-cccchHHhhhCCCC----HHHH-hcCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 3 IDPQLKARCQEHNIPVHMD-GARVFNAASYLGLP----LAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~D-gAr~~~~~~~~~~~----~~~~-~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
+++++.++||+||+|+++| ||+.+.....+|.+ ++++ ..++|+|+|||+|.+|+|++|+|+|++++|++
T Consensus 158 ~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~ 232 (367)
T PF03841_consen 158 SLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIEK 232 (367)
T ss_dssp ---HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHHH
T ss_pred cHHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHHH
Confidence 5789999999999999999 88888777777654 3444 58899999999999999999999999999974
No 6
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.65 E-value=1.3e-16 Score=116.09 Aligned_cols=70 Identities=21% Similarity=0.333 Sum_probs=61.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhh--------hCCCCH----HHHhcCCcEEEEcCCCCCccceeEEEE-ecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAAS--------YLGLPL----AEVCASVDTVMFCLSKGLGAPVGSILA-GPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~--------~~~~~~----~~~~~~~D~v~~s~~K~lg~p~gg~l~-g~~~~ 68 (71)
++++++.++|++||+++|+||||+++|++ +.+.++ +|+.+++|++++|++|..++|+||+|+ +++++
T Consensus 191 ~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~~d~~l 270 (450)
T TIGR02618 191 ANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCMNDDEM 270 (450)
T ss_pred HHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEeCCHHH
Confidence 57899999999999999999999996555 568888 566799999999999999999999998 88888
Q ss_pred ccC
Q psy15462 69 IQK 71 (71)
Q Consensus 69 i~~ 71 (71)
+++
T Consensus 271 ~~k 273 (450)
T TIGR02618 271 FQS 273 (450)
T ss_pred HHH
Confidence 753
No 7
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.54 E-value=6.4e-15 Score=107.49 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=58.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhh--------hCCCCHH----HHhcCCcEEEEcCCCCCccceeEEE-Eecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAAS--------YLGLPLA----EVCASVDTVMFCLSKGLGAPVGSIL-AGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~--------~~~~~~~----~~~~~~D~v~~s~~K~lg~p~gg~l-~g~~~~ 68 (71)
+++++|.++|++||++||+||||+++|++ +.+.++. |+.+++|.++||++|.+++|.||+| ++++++
T Consensus 198 ~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~D~eL 277 (460)
T PRK13237 198 ANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMNDEEL 277 (460)
T ss_pred HhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEECCHHH
Confidence 57899999999999999999999999886 5677765 5579999999999999999987755 666666
Q ss_pred cc
Q psy15462 69 IQ 70 (71)
Q Consensus 69 i~ 70 (71)
++
T Consensus 278 ~~ 279 (460)
T PRK13237 278 FD 279 (460)
T ss_pred HH
Confidence 54
No 8
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=99.52 E-value=1.3e-14 Score=104.16 Aligned_cols=66 Identities=29% Similarity=0.400 Sum_probs=53.2
Q ss_pred cHHHHHHHHHhcCCcEEEe-cccchHHhhhCCCCHHHH-hcCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 3 IDPQLKARCQEHNIPVHMD-GARVFNAASYLGLPLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~D-gAr~~~~~~~~~~~~~~~-~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
+++++.++||++|+|+++| ||...- -.-..++++ ..++|+|+||++|.+|+|++|+|+|++|+|++
T Consensus 175 ~~~~l~~ia~~~~lpvivD~aSg~~v---~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~ 242 (395)
T COG1921 175 SEEELVEIAHEKGLPVIVDLASGALV---DKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEK 242 (395)
T ss_pred cHHHHHHHHHHcCCCEEEecCCcccc---ccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHHH
Confidence 4678999999999999999 442110 023446665 58899999999999999999999999999863
No 9
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.8e-13 Score=98.34 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce-eEEEEeccccccC
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFIQK 71 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i~~ 71 (71)
.++++|.++||++|+++++|||+-+ .+...++++ .++|.+.||+|||+++|. .|+|+++++++++
T Consensus 179 ~pv~~I~~la~~~ga~v~VDaaq~~---~h~~idv~~--l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~ 244 (405)
T COG0520 179 NPVKEIAELAHEHGALVLVDAAQAA---GHLPIDVQE--LGCDFLAFSGHKWLLGPTGIGVLYVRKELLEE 244 (405)
T ss_pred chHHHHHHHHHHcCCEEEEECcccc---CccCCCchh--cCCCEEEEcccccccCCCceEEEEEchHHHhh
Confidence 5799999999999999999999544 445555666 489999999999999995 5899999998763
No 10
>PRK04311 selenocysteine synthase; Provisional
Probab=99.42 E-value=2.9e-13 Score=98.67 Aligned_cols=68 Identities=34% Similarity=0.429 Sum_probs=53.1
Q ss_pred cHHHHHHHHHhcCCcEEEec-ccchHHhhhCC----CCHHH-HhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDG-ARVFNAASYLG----LPLAE-VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~Dg-Ar~~~~~~~~~----~~~~~-~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
++++|+++||+||+++++|+ ++.+.....++ ..+.+ +..++|+++||+||++|+|++|++++++++|+
T Consensus 238 dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~ 311 (464)
T PRK04311 238 SLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIA 311 (464)
T ss_pred CHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHH
Confidence 68999999999999999994 44432222222 22333 24799999999999999999999999999886
No 11
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.42 E-value=3.1e-13 Score=98.29 Aligned_cols=68 Identities=37% Similarity=0.521 Sum_probs=52.2
Q ss_pred cHHHHHHHHHhcCCcEEEe-cccchHHhhhCC---CC-HHH-HhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMD-GARVFNAASYLG---LP-LAE-VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~D-gAr~~~~~~~~~---~~-~~~-~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
++++|+++||+||+++++| |++.+.....++ .+ +.+ +..++|+++||+||++|+|++|++++++++|+
T Consensus 233 dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~~i~ 306 (454)
T TIGR00474 233 SIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKELIE 306 (454)
T ss_pred CHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHHHHH
Confidence 6899999999999999999 444432221111 11 222 24789999999999999999999999999885
No 12
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.39 E-value=4.8e-13 Score=96.78 Aligned_cols=69 Identities=22% Similarity=0.272 Sum_probs=59.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhh--------CCCCHHHH----hcCCcEEEEcCCCCCccceeEEEEecc-cc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASY--------LGLPLAEV----CASVDTVMFCLSKGLGAPVGSILAGPE-EF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~--------~~~~~~~~----~~~~D~v~~s~~K~lg~p~gg~l~g~~-~~ 68 (71)
+++++|+++|++||++++.|+||+++++.. .+.++.++ .+.+|++++|++|.+++|.||+++++. ++
T Consensus 173 ~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l 252 (431)
T cd00617 173 ANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALRDDEL 252 (431)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccceEEEeCcHHH
Confidence 468999999999999999999999987763 46677664 578999999999999999999999987 47
Q ss_pred cc
Q psy15462 69 IQ 70 (71)
Q Consensus 69 i~ 70 (71)
++
T Consensus 253 ~~ 254 (431)
T cd00617 253 YE 254 (431)
T ss_pred HH
Confidence 64
No 13
>PLN02590 probable tyrosine decarboxylase
Probab=99.39 E-value=7.2e-13 Score=98.20 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=48.8
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCcccee-E-EEEecc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVG-S-ILAGPE 66 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~g-g-~l~g~~ 66 (71)
+|++++|+++|++||+|+||||| +...+......+++ .+.+|++++++|||++.|.+ | +++.++
T Consensus 303 iDpl~~Ia~i~~~~g~WlHVDaA--~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~ 371 (539)
T PLN02590 303 VDPLVPLGNIAKKYGIWLHVDAA--YAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDR 371 (539)
T ss_pred cCCHHHHHHHHHHhCCeEEEecc--hhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCH
Confidence 48999999999999999999998 33333333334444 36789999999999999984 3 556554
No 14
>PLN02721 threonine aldolase
Probab=99.37 E-value=9.6e-13 Score=89.95 Aligned_cols=69 Identities=42% Similarity=0.832 Sum_probs=57.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|+|+.+......+.++.+...++|++++|+||++++|.|+++++++++++
T Consensus 158 ~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~ 226 (353)
T PLN02721 158 EYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIR 226 (353)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHH
Confidence 358899999999999999999976654333466666666789999999999999999988889998875
No 15
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.35 E-value=1.2e-12 Score=92.96 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCcccee-E-EEEecccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVG-S-ILAGPEEF 68 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~g-g-~l~g~~~~ 68 (71)
+|++++|+++|+++++|+||||| +..........++. .+.+|++++++|||++.|.+ | +++.+++.
T Consensus 210 ~D~l~~i~~i~~~~~~wlHVDaA--~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~ 280 (373)
T PF00282_consen 210 IDPLEEIADICEKYNIWLHVDAA--YGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSD 280 (373)
T ss_dssp B-SHHHHHHHHHHCT-EEEEEET--TGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGG
T ss_pred ccCHHHHhhhccccceeeeeccc--ccccccccccccccccccccccccccchhhhhcCCccceeEEeecccc
Confidence 48999999999999999999988 32222222233333 47899999999999999984 3 55666544
No 16
>PLN03032 serine decarboxylase; Provisional
Probab=99.34 E-value=1.6e-12 Score=92.73 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHhcCC-----cEEEecccchHHhhhCCC-CHHHHhcCCcEEEEcCCCCCcccee-EEEEecccccc
Q psy15462 1 MSIDPQLKARCQEHNI-----PVHMDGARVFNAASYLGL-PLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 70 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi-----~l~~DgAr~~~~~~~~~~-~~~~~~~~~D~v~~s~~K~lg~p~g-g~l~g~~~~i~ 70 (71)
++++++|+++|+++|+ |+|+|||.-......... +.-+...++|++++|+||++|+|.| |+++.++++++
T Consensus 177 idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~ 253 (374)
T PLN03032 177 VDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVK 253 (374)
T ss_pred CCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhH
Confidence 4899999999999975 899999965543333221 1112335799999999999888986 67777776653
No 17
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.34 E-value=2e-12 Score=95.41 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh---cCCcEEEEcCCCCCcccee-EEE-Eecccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC---ASVDTVMFCLSKGLGAPVG-SIL-AGPEEF 68 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~---~~~D~v~~s~~K~lg~p~g-g~l-~g~~~~ 68 (71)
++++++|+++|+++|+|+|+|||.-. ........++.. +++|++++|+|||+++|.| |++ +.++++
T Consensus 281 iDpl~eIa~i~~~~g~~lHVDaA~gg--~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~ 351 (522)
T TIGR03799 281 IDPLDEMADIAQELGCHFHVDAAWGG--ATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPAL 351 (522)
T ss_pred cCCHHHHHHHHHHcCCeEEEEchhhh--HHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHH
Confidence 47999999999999999999999322 111122233332 5789999999999999985 555 555544
No 18
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.31 E-value=4.1e-12 Score=89.29 Aligned_cols=61 Identities=23% Similarity=0.384 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH-hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~-~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|+++||+||+++++|+|+ +.++... ..++|+++||+||++++|.+|++++++++++
T Consensus 166 ~~~~~i~~~a~~~gi~vivD~a~--------~~~~~~~~~~g~D~~~~S~~K~l~gp~~G~l~~~~~~i~ 227 (363)
T TIGR01437 166 LSVEDAAQVAQEHNLPLIVDAAA--------EEDLQKYYRLGADLVIYSGAKAIEGPTSGLVLGKKKYIE 227 (363)
T ss_pred CCHHHHHHHHHHcCCeEEEECCC--------CCchHHHHHcCCCEEEEeCCcccCCCceEEEEEcHHHHH
Confidence 36899999999999999999995 2334332 2368999999999999999999999988875
No 19
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.31 E-value=3.2e-12 Score=92.88 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=57.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhh--------CCCCHHHH----hcCCcEEEEcCCCCCccceeEEEEec-ccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASY--------LGLPLAEV----CASVDTVMFCLSKGLGAPVGSILAGP-EEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~--------~~~~~~~~----~~~~D~v~~s~~K~lg~p~gg~l~g~-~~~ 68 (71)
+++++|+++|++||++++.|+||+++++.+ .+.++.++ .+.+|+++||++|++.+|.||+++.+ +++
T Consensus 198 ~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l 277 (460)
T PRK13238 198 ANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDL 277 (460)
T ss_pred HHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHH
Confidence 468999999999999999999999876543 35666655 37899999999999999999999988 466
Q ss_pred cc
Q psy15462 69 IQ 70 (71)
Q Consensus 69 i~ 70 (71)
++
T Consensus 278 ~~ 279 (460)
T PRK13238 278 FT 279 (460)
T ss_pred HH
Confidence 54
No 20
>PRK02769 histidine decarboxylase; Provisional
Probab=99.30 E-value=2.5e-12 Score=91.59 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHHhcC---CcEEEecccchHHhhhCCCC-HHHHhcCCcEEEEcCCCCCcccee-EEEEecccccc
Q psy15462 1 MSIDPQLKARCQEHN---IPVHMDGARVFNAASYLGLP-LAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 70 (71)
Q Consensus 1 ~~~l~~i~~~a~~~g---i~l~~DgAr~~~~~~~~~~~-~~~~~~~~D~v~~s~~K~lg~p~g-g~l~g~~~~i~ 70 (71)
++++++|+++|+++| +++|+|||.-.....+.... .-+...++|++++|+||++|+|.| |+++.+++.++
T Consensus 176 idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~ 250 (380)
T PRK02769 176 IDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVE 250 (380)
T ss_pred cCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhhh
Confidence 478999999999998 69999999533221111110 112234899999999999998984 57766666543
No 21
>PLN02880 tyrosine decarboxylase
Probab=99.30 E-value=3.3e-12 Score=93.41 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=45.4
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCccceeE-EEE
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVGS-ILA 63 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~gg-~l~ 63 (71)
+|++++|+++|++||+|+||||| +......-...++. .+.+|++++++|||+++|.++ +++
T Consensus 255 iDpl~eI~~i~~~~~iwlHVDaA--~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~ll 319 (490)
T PLN02880 255 VDPLLELGKIAKSNGMWFHVDAA--YAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLW 319 (490)
T ss_pred cCcHHHHHHHHHHcCCEEEEehh--hHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEE
Confidence 48999999999999999999998 32222222222333 267999999999999999853 444
No 22
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.30 E-value=3.5e-12 Score=86.73 Aligned_cols=69 Identities=45% Similarity=0.761 Sum_probs=57.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|+|+........+.++..+..++|++++|+||+++.|.|+++++++++++
T Consensus 146 ~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~ 214 (338)
T cd06502 146 DELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIA 214 (338)
T ss_pred HHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHH
Confidence 468899999999999999999976654444555666555789999999999999998888889988765
No 23
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=99.21 E-value=1.5e-11 Score=88.59 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=60.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhh--------CCCCHHHH----hcCCcEEEEcCCCCCccceeEEEEeccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASY--------LGLPLAEV----CASVDTVMFCLSKGLGAPVGSILAGPEE 67 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~--------~~~~~~~~----~~~~D~v~~s~~K~lg~p~gg~l~g~~~ 67 (71)
+++++++.++|++|+||+++|++|+++|+++ .++++++| .+++|.+++|+.|..-+|+||+|+-+.+
T Consensus 205 m~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~ 283 (471)
T COG3033 205 MANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDD 283 (471)
T ss_pred HHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccccEEEecCc
Confidence 4689999999999999999999999999986 46777655 6999999999999999999999988765
No 24
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.20 E-value=2.6e-11 Score=88.49 Aligned_cols=67 Identities=24% Similarity=0.134 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-hcCCcEEEEcCCCCCcccee--EEEEeccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-CASVDTVMFCLSKGLGAPVG--SILAGPEE 67 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-~~~~D~v~~s~~K~lg~p~g--g~l~g~~~ 67 (71)
+|++++|+++|+++++|+|+|||-=...+.+...... .. .+++|++++|+||++.+|.| .+++.+++
T Consensus 223 iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e 293 (460)
T COG0076 223 IDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEE 293 (460)
T ss_pred cCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHH
Confidence 5899999999999999999998811111111111112 22 47899999999999999984 47777773
No 25
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.18 E-value=2.9e-11 Score=87.06 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i 69 (71)
.++++|+++||++|+++|+|+|+.+........+ ..+ .++|++++|+|||+++|.||+++.+++++
T Consensus 197 ~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~-~~~-~~~D~l~~S~hK~l~GP~Gg~l~~~~~~~ 262 (452)
T PTZ00094 197 IDYKRFREICDSVGAYLMADIAHTSGLVAAGVLP-SPF-PYADVVTTTTHKSLRGPRSGLIFYRKKVK 262 (452)
T ss_pred cCHHHHHHHHHHcCCEEEEeccchhccccCCCCC-CCC-CCCcEEEcCCccCCCCCCceEEEEecccc
Confidence 4789999999999999999999755322211111 111 37999999999999999999888776543
No 26
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.18 E-value=5.1e-11 Score=86.19 Aligned_cols=66 Identities=17% Similarity=0.019 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHhc------CCcEEEecccchHHhhh-CCCCHHHH-hcCCcEEEEcCCCCCcccee-EEEEecc
Q psy15462 1 MSIDPQLKARCQEH------NIPVHMDGARVFNAASY-LGLPLAEV-CASVDTVMFCLSKGLGAPVG-SILAGPE 66 (71)
Q Consensus 1 ~~~l~~i~~~a~~~------gi~l~~DgAr~~~~~~~-~~~~~~~~-~~~~D~v~~s~~K~lg~p~g-g~l~g~~ 66 (71)
++++++|+++|+++ |+|+|+|||.-...... .+....++ ..++|++++|+|||+++|.| |+++.++
T Consensus 202 idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~ 276 (431)
T TIGR01788 202 YEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRD 276 (431)
T ss_pred cCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeC
Confidence 47999999999999 99999999965332221 12111222 47899999999999878875 6665443
No 27
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.15 E-value=5.2e-11 Score=85.59 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=44.8
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh-cCCcEEEEcCCCCCcccee-EEEEecc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC-ASVDTVMFCLSKGLGAPVG-SILAGPE 66 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~-~~~D~v~~s~~K~lg~p~g-g~l~g~~ 66 (71)
++++++|.++|+++|+++|+|+++ ..|.-+-++. .++|+++||+|| +++|.| |+|+-++
T Consensus 157 IQpI~ei~~i~k~~~i~fHvDAvQ------a~Gkipi~~~~~~vD~ls~SaHK-~~GpkGiGaLyv~~ 217 (386)
T COG1104 157 IQPIAEIGEICKERGILFHVDAVQ------AVGKIPIDLEELGVDLLSFSAHK-FGGPKGIGALYVRP 217 (386)
T ss_pred cccHHHHHHHHHHcCCeEEEehhh------hcCceeccccccCcceEEeehhh-ccCCCceEEEEECC
Confidence 478999999999999999999994 3443333332 369999999999 788864 5655444
No 28
>PLN02263 serine decarboxylase
Probab=99.13 E-value=1.1e-10 Score=85.62 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=46.1
Q ss_pred CCcHHHHHHHHHhcCC-----cEEEecccchHHhhhCCC-CHHHHhcCCcEEEEcCCCCCcccee-EEEEecccc
Q psy15462 1 MSIDPQLKARCQEHNI-----PVHMDGARVFNAASYLGL-PLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEF 68 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi-----~l~~DgAr~~~~~~~~~~-~~~~~~~~~D~v~~s~~K~lg~p~g-g~l~g~~~~ 68 (71)
+|++++|+++|+++|+ |+|+|||---....+... +.-+....+|++++++|||++.|.+ |+++-++..
T Consensus 244 iDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~ 318 (470)
T PLN02263 244 VDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH 318 (470)
T ss_pred CCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhh
Confidence 4899999999999997 999999821111111111 1112234599999999999999984 455544443
No 29
>PLN02651 cysteine desulfurase
Probab=99.12 E-value=1.2e-10 Score=81.09 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce-eEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i 69 (71)
.++++|.++||++|+++|+|+++.+. ....++.+ .++|++++|+||| ++|. .|+++.++++.
T Consensus 155 ~~l~~I~~~~~~~g~~~~vD~a~~~g---~~~~~~~~--~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~ 217 (364)
T PLN02651 155 QPVEEIGELCREKKVLFHTDAAQAVG---KIPVDVDD--LGVDLMSISGHKI-YGPKGVGALYVRRRPR 217 (364)
T ss_pred ccHHHHHHHHHHcCCEEEEEcchhhC---CcccCccc--CCCCEEEechhhh-CCCCceEEEEEcCCCC
Confidence 57899999999999999999995431 12233333 4789999999998 5565 46777676654
No 30
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.12 E-value=1e-10 Score=85.46 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=51.8
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 69 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i 69 (71)
++++|+++|+++|.++++|+|+.+......+.+ .-..++|++++++||||++|.||+|+++++++
T Consensus 199 D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~--~p~~~~Div~~t~hK~L~GP~Gg~I~~~~~~~ 263 (475)
T PLN03226 199 DYARMRKIADKVGALLMCDMAHISGLVAAQEAA--SPFEYCDVVTTTTHKSLRGPRGGMIFFRKGPK 263 (475)
T ss_pred CHHHHHHHHHHcCCEEEEEchhhhCcccCCCCC--CCCCCCeEEEecCcccccCCCceEEEEchhhc
Confidence 588999999999999999999877544433322 11247999999999999889999999887654
No 31
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.08 E-value=2.8e-10 Score=69.56 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=46.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEec
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~ 65 (71)
++++|.++|+++|+++|+|+++............. ..++|+++.|+||++++|.+|++++|
T Consensus 110 ~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~--~~~~d~~~~s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 110 PLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIP--EGGADVVTFSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred CHHHHHHHHHHcCCEEEEecccccccccccccccc--cccCCEEEEEcccccCCCceEEEEeC
Confidence 46899999999999999999865432221111122 35799999999999999999988765
No 32
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.06 E-value=2.6e-10 Score=78.89 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++|+|++..+. ....++.+ .++|++++|+||++++|..|+++.++++++
T Consensus 156 ~~~~~i~~~~~~~~~~li~D~a~~~~---~~~~~~~~--~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~ 219 (373)
T cd06453 156 NPVKEIGEIAHEAGVPVLVDGAQSAG---HMPVDVQD--LGCDFLAFSGHKMLGPTGIGVLYGKEELLE 219 (373)
T ss_pred CCHHHHHHHHHHcCCEEEEEhhhhcC---ceeeeccc--cCCCEEEeccccccCCCCcEEEEEchHHhh
Confidence 57899999999999999999884221 11112222 378999999999999876689999988775
No 33
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.03 E-value=5.6e-10 Score=78.61 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=50.9
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce-eEEEEecccccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ 70 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i~ 70 (71)
+.++++|.++||++|+++|+|+|.... ..+.+..+ .++|++++|+||++++|. +|++++++++++
T Consensus 174 ~~~l~~I~~la~~~g~~livD~a~~~g---~~~~~~~~--~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~ 239 (387)
T PRK09331 174 LADAKKVAKVAHEYGIPFLLNGAYTVG---RMPVDGKK--LGADFIVGSGHKSMAASAPSGVLATTEEYAD 239 (387)
T ss_pred cccHHHHHHHHHHcCCEEEEECCcccC---CcCCCHHH--cCCCEEEeeCcccccCCCCEEEEEECHHHHh
Confidence 357999999999999999999984321 12234444 478999999999998774 679999998876
No 34
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.02 E-value=5.2e-10 Score=81.53 Aligned_cols=64 Identities=27% Similarity=0.346 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCC-CHHHH-----hc-CCcEEEEcCCCCCccce-eEEEEe-cccccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGL-PLAEV-----CA-SVDTVMFCLSKGLGAPV-GSILAG-PEEFIQ 70 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~-~~~~~-----~~-~~D~v~~s~~K~lg~p~-gg~l~g-~~~~i~ 70 (71)
++++++|+++|++||||+|+|+|.-+ +. ...++ .. .+|++++|+||++.+|. |++++. ++++++
T Consensus 221 ~ddL~eIa~la~k~gI~lIvDaAyg~------~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~ 293 (444)
T TIGR03531 221 PDDIEEIAKICANYDIPHIVNNAYGL------QSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQ 293 (444)
T ss_pred hhCHHHHHHHHHHcCCEEEEECcCcC------cChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHH
Confidence 37899999999999999999988321 11 11222 12 47999999999999986 667755 666653
No 35
>KOG1549|consensus
Probab=99.01 E-value=3.7e-10 Score=82.01 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPE 66 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~ 66 (71)
+.+++||.++||++||.+|+|+|+-. -....++++ .++|.+++|+|||+|.|.-|+|+.++
T Consensus 197 ~~Pv~EI~~icr~~~v~v~~DaAQav---G~i~vDV~e--ln~D~~s~s~HK~ygp~~iGaLYvr~ 257 (428)
T KOG1549|consen 197 LQPVKEIVKICREEGVQVHVDAAQAV---GKIPVDVQE--LNADFLSISAHKIYGPPGIGALYVRR 257 (428)
T ss_pred cccHHHHHHHhCcCCcEEEeehhhhc---CCccccHHH--cCchheeeecccccCCCcceEEEEcc
Confidence 36899999999999999999999321 122334556 48999999999999999666776664
No 36
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.00 E-value=4.4e-10 Score=80.41 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=50.4
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 69 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i 69 (71)
++++|.++|+++|+++++|+|+.+.... .|.....+ ..+|++++|+||++++|.||+++++++.+
T Consensus 184 dl~~l~~la~~~g~~livD~Aha~G~~~-~g~~~~~~-~~~Di~~~s~~K~l~g~~GG~v~~~~~~~ 248 (416)
T PRK13034 184 DFARFREIADEVGALLMVDMAHIAGLVA-AGEHPNPF-PHAHVVTTTTHKTLRGPRGGMILTNDEEI 248 (416)
T ss_pred CHHHHHHHHHHcCCEEEEeCcccccCcc-cCCCCCCC-CCceEEEEeCcccCCCCCCeEEEECcHHH
Confidence 7899999999999999999997663222 33322223 46999999999999889999888876543
No 37
>PRK10534 L-threonine aldolase; Provisional
Probab=99.00 E-value=4.1e-10 Score=77.07 Aligned_cols=69 Identities=42% Similarity=0.708 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+++++|.++|+++++++++|.|.++......+.++..+....|.+++|+||.++.+.|+.+++++++|+
T Consensus 147 ~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~ 215 (333)
T PRK10534 147 EYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIK 215 (333)
T ss_pred HHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCHHHHH
Confidence 467888999999999999999987754433456666665667888899999999888888899999875
No 38
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=98.99 E-value=5.3e-10 Score=82.50 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHH--HhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAE--VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~--~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
-++++|+++|+++|..+++|.|+.+.-.. .+.-..+ ...++|++++|+||++++|.||++++++++++
T Consensus 235 ~dl~~i~eia~~~gA~L~VD~AH~~Glig-g~~~~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~ 304 (493)
T PRK13580 235 VNFAKLREIADEVGAVLMVDMAHFAGLVA-GKVFTGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYAD 304 (493)
T ss_pred cCHHHHHHHHHHcCCEEEEECchhhceec-cccchhhcCCCCCCcEEEeCChhhccCCCeEEEEecHHHHH
Confidence 47899999999999999999987664222 1211111 13579999999999998899999999998764
No 39
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.98 E-value=1e-09 Score=75.78 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~ 68 (71)
.++++|.++||++|+++++|+++.+.. ...++.+ .++|++++|+||++|.|..|+++.+++.
T Consensus 155 ~~~~~I~~l~~~~~~~~ivD~a~~~g~---~~~~~~~--~~~D~~~~s~~K~~gp~g~g~l~~~~~~ 216 (353)
T TIGR03235 155 QPIREIAEVLEAHEAFFHVDAAQVVGK---ITVDLSA--DRIDLISCSGHKIYGPKGIGALVIRKRG 216 (353)
T ss_pred cCHHHHHHHHHHcCCEEEEEchhhcCC---ccccccc--cCCCEEEeehhhcCCCCceEEEEEccCc
Confidence 468999999999999999999853321 1222222 4799999999998664445777777764
No 40
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=98.98 E-value=8.1e-10 Score=76.50 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCcccee-EEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~g-g~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|++.-+. ....++.+ -++|++++|+|||+++|.| |+++.+++.++
T Consensus 146 ~~i~~I~~l~~~~g~~livD~~~~~g---~~~~~~~~--~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~ 210 (363)
T TIGR02326 146 NPIEAVAKLAHRHGKVTIVDAMSSFG---GIPIDIAE--LHIDYLISSANKCIQGVPGFGFVIARQAELA 210 (363)
T ss_pred CcHHHHHHHHHHcCCEEEEEcccccc---Ccccchhh--cCccEEEecCccccccCCcceEEEECHHHHH
Confidence 46899999999999999999874321 11223333 3689999999999987766 89988887764
No 41
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=98.97 E-value=1.6e-09 Score=74.75 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhC--CCC--HHHH-hcCCcEEEEcCCCCCccc--eeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYL--GLP--LAEV-CASVDTVMFCLSKGLGAP--VGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~--~~~--~~~~-~~~~D~v~~s~~K~lg~p--~gg~l~g~~~~i~ 70 (71)
.++++|.++||++|+++|+|+|......... +.. .-++ ..++|++++|+|||+.+| .|+++++++++++
T Consensus 170 ~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~ 245 (373)
T TIGR03812 170 DDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLK 245 (373)
T ss_pred CCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHh
Confidence 5799999999999999999998643221111 111 1112 248899999999986655 5778888888764
No 42
>PRK05968 hypothetical protein; Provisional
Probab=98.97 E-value=6.6e-10 Score=78.93 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i~ 70 (71)
.++++|+++||++|+++++|++... .....+ +..++|++.+|++|++++| .||++++++++++
T Consensus 164 ~dl~~i~~la~~~gi~vivD~a~a~---~~~~~p---~~~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~ 229 (389)
T PRK05968 164 QDVAALAALAKRHGVVTMIDNSWAS---PVFQRP---ITLGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIA 229 (389)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcc---hhccCc---hhcCCcEEEeeccccccCCCCeEEEEEEECHHHHH
Confidence 5789999999999999999998321 111222 2347899999999999986 5889999988765
No 43
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=98.96 E-value=7.4e-10 Score=77.02 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=46.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce-eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|++..+. ....++.+ .++|++++|+|| +++|. .|+|+.++++++
T Consensus 156 ~pi~~I~~~~~~~~~~~~vD~~~~~g---~~~id~~~--~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~ 219 (371)
T PF00266_consen 156 NPIEEIAKLAHEYGALLVVDAAQSAG---CVPIDLDE--LGADFLVFSSHK-LGGPPGLGFLYVRPEAIE 219 (371)
T ss_dssp SSHHHHHHHHHHTTSEEEEE-TTTTT---TSS--TTT--TTESEEEEESTS-TTSSSTEEEEEEEHHHHH
T ss_pred eeeceehhhhhccCCceeEechhccc---cccccccc--cccceeeecccc-cCCCCchhhheehhhhhh
Confidence 57999999999999999999995431 12233333 489999999999 55565 578888887764
No 44
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=98.95 E-value=1.3e-09 Score=77.04 Aligned_cols=60 Identities=20% Similarity=0.141 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEE-Eecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSIL-AGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l-~g~~ 66 (71)
.++++|+++||++|+++++|+++.+. ....++.+ .++|++++|+|||+++|.|+.+ +.++
T Consensus 188 ~~~~~i~~~~~~~g~~~~vD~aq~~G---~~~id~~~--~gvD~~~~s~hK~l~g~pG~~l~v~~~ 248 (406)
T TIGR01814 188 FDMAAITRAAHAKGALVGFDLAHAVG---NVPLDLHD--WGVDFACWCTYKYLNAGPGAGAFVHEK 248 (406)
T ss_pred cCHHHHHHHHHHcCCEEEEEcccccC---Cccccccc--CCCCEEEEcCccccCCCCCeEEEEehh
Confidence 47899999999999999999995441 12223333 4899999999999854435544 4443
No 45
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=98.92 E-value=2.8e-09 Score=73.97 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=50.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce-eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|+|..+. ....+..+ .++|++++|+||++++|. +|++++++++++
T Consensus 156 ~~~~~i~~~~~~~~~~vivD~a~~~g---~~~~~~~~--~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~ 220 (361)
T cd06452 156 HDAKKIAKVCHEYGVPLLLNGAYTVG---RMPVSGKE--LGADFIVGSGHKSMAASAPIGVLATTEEWAD 220 (361)
T ss_pred ccHHHHHHHHHHcCCeEEEECCcccC---CcCCCHHH--cCCCEEEecCCccccCCCCeEEEEECHHHHH
Confidence 57899999999999999999995321 12334444 368999999999998764 679999988775
No 46
>PRK06767 methionine gamma-lyase; Provisional
Probab=98.92 E-value=1.4e-09 Score=77.08 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~~~~i~ 70 (71)
-++++|.++|+++|+++++|++.. ....+.+ +..++|++++|++|+++++. ||++++++++|+
T Consensus 163 ~dl~~I~~la~~~g~~vivD~a~a---~~~~~~p---l~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~ 228 (386)
T PRK06767 163 IDLKQVIRVAKRNGLLVIVDNTFC---SPYLQRP---LELGCDAVVHSATKYIGGHGDVVAGVTICKTRALA 228 (386)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCc---ccccCCc---hhcCCcEEEecCcceecCCCCceeEEEEeChHHHH
Confidence 368999999999999999999831 1222333 33589999999999988874 889999988774
No 47
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=98.92 E-value=2.2e-09 Score=75.11 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=47.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|++..+. ....++.+ .++|++++|+||++|.+..|+++.++++++
T Consensus 176 ~~~~~i~~~~~~~~~~~ivD~a~~~g---~~~~~~~~--~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~ 239 (403)
T TIGR01979 176 NPVEEIAKLAHQVGAKVLVDGAQAVP---HMPVDVQA--LDCDFYVFSGHKMYGPTGIGVLYGKEELLE 239 (403)
T ss_pred CCHHHHHHHHHHcCCEEEEEchhhcC---ccccCccc--cCCCEEEEecccccCCCCceEEEEchHHHh
Confidence 46899999999999999999984321 12222333 378999999999876443478888888764
No 48
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=98.92 E-value=2.3e-09 Score=75.62 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~ 68 (71)
.++++|.++|+++|+++|+|+++.+. ....++.+ .++|++++|+||++|.+..|+++.+++.
T Consensus 159 ~~~~~I~~l~~~~g~~livD~a~a~g---~~~~~~~~--~~~D~~~~s~~K~~gp~G~G~l~~~~~~ 220 (402)
T TIGR02006 159 QDIAAIGEICRERKVFFHVDAAQSVG---KIPINVNE--LKVDLMSISGHKIYGPKGIGALYVRRKP 220 (402)
T ss_pred ccHHHHHHHHHHcCCEEEEEcchhcC---CcccCccc--cCCCEEEEehhhhcCCCceEEEEEccCC
Confidence 57899999999999999999995331 12222333 4899999999997764444566555543
No 49
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=98.92 E-value=1.3e-09 Score=77.55 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=49.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~~~~i~ 70 (71)
-++++|.++|+++|+++++|++... ...+.+ +..++|++++|++|++++|. ||++++++++++
T Consensus 161 ~dl~~I~~la~~~gi~livD~a~a~---~~~~~~---~~~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~ 226 (391)
T TIGR01328 161 IDMERVCRDAHSQGVKVIVDNTFAT---PMLTNP---VALGVDVVVHSATKYIGGHGDVVAGLICGKAELLQ 226 (391)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCch---hccCCc---hhcCCCEEEccccccccCCCCceEEEEEcCHHHHH
Confidence 3689999999999999999998321 112222 33589999999999998764 789999998875
No 50
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.92 E-value=2.6e-09 Score=77.44 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~~~ 67 (71)
.++++|+++||++|+++++|++.... ....+.+ .++|++++|+||+++++. ||+++++++
T Consensus 172 ~di~~I~~la~~~gi~livD~t~a~g----~~~~p~~--~GaDivv~S~~K~l~G~gd~~gG~vv~~~~ 234 (437)
T PRK05613 172 LDIPAVAEVAHRNQVPLIVDNTIATA----ALVRPLE--LGADVVVASLTKFYTGNGSGLGGVLIDGGK 234 (437)
T ss_pred cCHHHHHHHHHHcCCeEEEECCCccc----cccChHH--hCCCEEEeeccceecCCCcceeEEEEecCc
Confidence 57999999999999999999994221 1122233 589999999999999873 788886544
No 51
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=98.91 E-value=2.9e-09 Score=73.62 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCcccee--EEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVG--SILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~g--g~l~g~~~ 67 (71)
.++++|.++||++|+++++|+++-+.. ...++.+ .++|++++|+|||+++|.| ++++.++.
T Consensus 154 ~~~~~i~~l~~~~~~~livD~a~~~g~---~~~~~~~--~~~D~~~~s~~K~l~~p~g~g~l~~~~~~ 216 (376)
T TIGR01977 154 LPIEEIGELAQENGIFFILDAAQTAGV---IPIDMTE--LAIDMLAFTGHKGLLGPQGTGGLYIREGI 216 (376)
T ss_pred CCHHHHHHHHHHcCCEEEEEhhhccCc---cCCCchh--cCCCEEEecccccccCCCCceEEEEcCCc
Confidence 468999999999999999999853311 1122222 5899999999999999864 45555554
No 52
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=98.91 E-value=1.4e-09 Score=74.74 Aligned_cols=63 Identities=22% Similarity=0.206 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH-hcCCcEEEEcCCCCCcccee-EEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV-CASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~-~~~~D~v~~s~~K~lg~p~g-g~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|++.-+ |..+-++ ..++|++++|+||++++|.| |+++.++++++
T Consensus 141 ~~~~~i~~~a~~~~~~li~D~~~~~------g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~ 205 (356)
T cd06451 141 NPLEGIGALAKKHDALLIVDAVSSL------GGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALE 205 (356)
T ss_pred cCHHHHHHHHHhcCCEEEEeeehhc------cCccccccccCccEEEecCchhccCCCCcceeEECHHHHH
Confidence 4689999999999999999998432 3221112 24789999999999999865 78888888764
No 53
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=98.90 E-value=2.7e-09 Score=80.30 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=46.1
Q ss_pred CCcHHHHHHHH---HhcCC--cEEEecccchHHhh---hCC-----------------------------CCHHHH---h
Q psy15462 1 MSIDPQLKARC---QEHNI--PVHMDGARVFNAAS---YLG-----------------------------LPLAEV---C 40 (71)
Q Consensus 1 ~~~l~~i~~~a---~~~gi--~l~~DgAr~~~~~~---~~~-----------------------------~~~~~~---~ 40 (71)
+|++++|+++| +++|+ |+|+||| +.... ... ...++. .
T Consensus 294 iDpl~eI~~l~~~~~~~gl~~~lHVDAA--yGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gl 371 (608)
T TIGR03811 294 VDGIDKIVALRNKLMKEGIYFYLHVDAA--YGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAI 371 (608)
T ss_pred cCCHHHHHHHHHHHHHcCCceeEeeecc--ccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcC
Confidence 58899999998 77999 5999988 22211 111 001111 4
Q ss_pred cCCcEEEEcCCCCCccce--eEEEEecccc
Q psy15462 41 ASVDTVMFCLSKGLGAPV--GSILAGPEEF 68 (71)
Q Consensus 41 ~~~D~v~~s~~K~lg~p~--gg~l~g~~~~ 68 (71)
+.+|++++++||+++.|. |++++.++++
T Consensus 372 e~ADSItvDpHK~g~~Py~~G~ll~Rd~~~ 401 (608)
T TIGR03811 372 SEAESVTIDPHKMGYIPYSAGGIVIQDIRM 401 (608)
T ss_pred cCceEEEeCcccccccCCCeEEEEEeCHHH
Confidence 789999999999999997 4467776653
No 54
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=98.90 E-value=2.4e-09 Score=74.66 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|++.... ....++.+ .++|++++|+||++|.+ .|++++++++++
T Consensus 173 ~~~~~i~~~~~~~~~~~ivD~a~~~~---~~~~~~~~--~~~d~~~~s~~K~~g~~-~G~l~~~~~~~~ 235 (397)
T TIGR01976 173 VDLAAITELVHAAGALVVVDAVHYAP---HGLIDVQA--TGADFLTCSAYKFFGPH-MGILWGRPELLM 235 (397)
T ss_pred CCHHHHHHHHHHcCCEEEEehhhhcc---ccCCCHHH--cCCCEEEEechhhcCCc-eEEEEEcHHHHh
Confidence 47899999999999999999985321 11223333 47899999999998755 778888888764
No 55
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=98.90 E-value=1.8e-09 Score=75.23 Aligned_cols=69 Identities=17% Similarity=0.176 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|++||+++++|.+.-+......+.++.+. ...+|+++.|+||+++++.+|.+++++++++
T Consensus 187 ~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~~~~ 258 (393)
T TIGR01822 187 APLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKEVVE 258 (393)
T ss_pred CCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHHHHH
Confidence 57899999999999999999885321111112222222 2368999999999999888999999988765
No 56
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=98.89 E-value=3.5e-09 Score=72.94 Aligned_cols=69 Identities=26% Similarity=0.255 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC-HHHH-hcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP-LAEV-CASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-~~~~-~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++|+|+|............ .-++ ..++|++++|+|||+++ |.|+++++++++++
T Consensus 168 ~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~ 240 (371)
T PRK13520 168 DPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLD 240 (371)
T ss_pred CCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHH
Confidence 5799999999999999999998543221111110 0111 25789999999998765 45677777776643
No 57
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=98.89 E-value=1.8e-09 Score=73.70 Aligned_cols=58 Identities=14% Similarity=0.017 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCccceeE
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVGS 60 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~gg 60 (71)
++++++|+++|+++|+++|+|+|..+.... ....... ..++|++++|+||++++|.|+
T Consensus 164 ~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~--~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~ 224 (345)
T cd06450 164 IDPLEEIADLAEKYDLWLHVDAAYGGFLLP--FPEPRHLDFGIERVDSISVDPHKYGLVPLGC 224 (345)
T ss_pred CCCHHHHHHHHHHhCCeEEEechhhHHHhh--ChhhHHHhcCccccCEEEEchhHhhCCCcch
Confidence 368999999999999999999995432211 1111111 247999999999999988753
No 58
>PLN02271 serine hydroxymethyltransferase
Probab=98.88 E-value=2.7e-09 Score=80.01 Aligned_cols=63 Identities=14% Similarity=0.068 Sum_probs=48.8
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEE 67 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~ 67 (71)
++++++++|+++|+.+++|+|+.+.-.+ .+.-+.. ..++|++++++||||.+|.||+|+.+++
T Consensus 314 D~~~i~eIAdevGA~LmvD~AH~aGLIa-~g~~~sP-~~~aDvvt~TTHKtLrGPrGG~I~~r~~ 376 (586)
T PLN02271 314 DYARFRQIADKCGAVLMCDMAHISGLVA-AKECVNP-FDYCDIVTSTTHKSLRGPRGGIIFYRKG 376 (586)
T ss_pred CHHHHHHHHHHcCCEEEEECcccccccc-cCcCCCC-CcCCcEEEeCCcccCCCCCceEEEeccc
Confidence 5889999999999999999997664322 2211111 2479999999999999999998877764
No 59
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=98.88 E-value=3.7e-09 Score=73.65 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=47.0
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCC-----ccceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGL-----GAPVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~l-----g~p~gg~l~g~~~~i~ 70 (71)
.+++|+++|++||+++++|+++... .......+ .++|++++|+||++ |+|.+|+++.++++++
T Consensus 177 ~l~~i~~la~~~g~~livD~~~~~~---~~~~~~~~--~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~ 244 (398)
T cd00613 177 LIKEIADIAHSAGALVYVDGDNLNL---TGLKPPGE--YGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVR 244 (398)
T ss_pred hHHHHHHHHHhcCCEEEEEeccccc---cCCCChHH--cCCCEEEeeccccCCCCCCCCCceeEEEEhhhhHh
Confidence 3699999999999999999874221 11112222 47999999999997 3467889999888764
No 60
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=98.88 E-value=1.8e-09 Score=76.19 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEec-ccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP-EEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~-~~~i~ 70 (71)
.++++|.++|+++|+++++|+|+.+.... .|..+..+. ++|++++|+||++++|.||.++++ +++++
T Consensus 180 ~~~~~I~~la~~~~~~livD~a~~~g~~~-~g~~~~~~~-~~di~~~S~~K~l~g~~gg~i~~~~~~~~~ 247 (416)
T PRK00011 180 IDFKRFREIADEVGAYLMVDMAHIAGLVA-AGVHPSPVP-HADVVTTTTHKTLRGPRGGLILTNDEELAK 247 (416)
T ss_pred cCHHHHHHHHHHcCCEEEEECcchhcccc-cCccCCCCC-CCcEEEecCCcCCCCCCceEEEeCCHHHHH
Confidence 36899999999999999999986542111 121111222 789999999999988988888885 56654
No 61
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=98.87 E-value=3.1e-09 Score=74.40 Aligned_cols=67 Identities=18% Similarity=0.117 Sum_probs=48.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecc-cccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPE-EFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~-~~i~ 70 (71)
.++++|.++|+++|+++++|+++.... ...|.....+. ++|+++.|+||++.+|.||.+++++ ++++
T Consensus 176 ~~~~~I~~l~~~~~~~li~D~a~~~g~-~~~g~~~~~~~-~~dv~~~s~sK~l~G~~gg~i~~~~~~~~~ 243 (402)
T cd00378 176 IDFKRFREIADEVGAYLLVDMAHVAGL-VAGGVFPNPLP-GADVVTTTTHKTLRGPRGGLILTRKGELAK 243 (402)
T ss_pred cCHHHHHHHHHhcCCEEEEEccchhhh-hhcccCCCccc-CCcEEEeccccCCCCCCceEEEeccHHHHH
Confidence 478999999999999999999863321 11221111122 6799999999999888888887776 6654
No 62
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=98.87 E-value=2.2e-09 Score=78.15 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC-CCHHHHhcCCcEEEEcCCCCCccce------eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKGLGAPV------GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~-~~~~~~~~~~D~v~~s~~K~lg~p~------gg~l~g~~~~i~ 70 (71)
+++++|+++||++|.++++|+|.... ..+ .++.+ .++|++++|+||++|+|. +|+++.++++++
T Consensus 225 ~dl~eI~~~a~~~gal~iVD~a~~~~---~~g~~~~~~--~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~ 295 (481)
T PRK04366 225 RNILEIAEIVHEAGGLLYYDGANLNA---ILGKARPGD--MGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAP 295 (481)
T ss_pred hHHHHHHHHHHHcCCEEEEEecChhh---hcccCCccc--cCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHh
Confidence 47899999999999999999996432 122 23444 489999999999998774 358877776653
No 63
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=98.86 E-value=5e-09 Score=73.47 Aligned_cols=64 Identities=17% Similarity=0.095 Sum_probs=47.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|++.-. .....++.+ .++|++++|+||.+|.+..|++++++++++
T Consensus 174 ~~~~~i~~~~~~~~~~~ivD~a~~~---~~~~~~~~~--~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 237 (398)
T TIGR03392 174 PDLARAITLAHQYGAVVVVDGAQGV---VHGPPDVQA--LDIDFYAFSGHKLYGPTGIGVLYGKTELLE 237 (398)
T ss_pred CCHHHHHHHHHHcCCEEEEEhhhhc---CCCCCChhh--cCCCEEEEecccccCCCceEEEEEcHHHHh
Confidence 4689999999999999999998522 112233333 368999999999766444578889988764
No 64
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=98.85 E-value=3.7e-09 Score=72.06 Aligned_cols=64 Identities=14% Similarity=0.216 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce-eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i~ 70 (71)
.++++|.++|++||+++++|++.-+.. ...++.+ -++|++++|++|++++|. .|++++++++++
T Consensus 142 ~~~~~i~~l~~~~~~~livD~~~s~g~---~~~~~~~--~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~ 206 (355)
T TIGR03301 142 NPLEAIAKVARSHGAVLIVDAMSSFGA---IPIDIEE--LDVDALIASANKCLEGVPGFGFVIARRDLLE 206 (355)
T ss_pred hHHHHHHHHHHHcCCEEEEEeccccCC---cccchhh--cCccEEEecCCcccccCCceeEEEECHHHHH
Confidence 368999999999999999998743321 1233333 378999999999986654 489999988765
No 65
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=98.85 E-value=3.5e-09 Score=75.29 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=46.6
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeE-EEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGS-ILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg-~l~g~~~~i~ 70 (71)
++++|.++||++|+++++|.+... +...+.+..++|++++|++|++++| .|| ++++++++++
T Consensus 155 dl~~I~~la~~~gi~livD~t~a~------~~~~~~l~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~ 220 (385)
T PRK08574 155 DVPEVAKAAKELGAILVVDNTFAT------PLLYRPLRHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLE 220 (385)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCc------cccCChhhhCCcEEEeeCceeecCCCCceeEEEEECcHHHHH
Confidence 589999999999999999998321 2111222357999999999999987 466 6677777654
No 66
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=98.84 E-value=3.6e-09 Score=74.30 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecc-cccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPE-EFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~-~~i~ 70 (71)
.++++|+++||++|+++++|++.... .... + +..++|++++|++|+++++ .||++++++ ++++
T Consensus 142 ~dl~~i~~la~~~g~~livD~t~~~~---~~~~-~--~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~ 208 (369)
T cd00614 142 VDIEAIAELAHEHGALLVVDNTFATP---YLQR-P--LELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQ 208 (369)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCcch---hcCC-h--hhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHH
Confidence 46899999999999999999883211 1111 1 2247999999999999875 488888877 7654
No 67
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=98.84 E-value=4.6e-09 Score=74.89 Aligned_cols=62 Identities=11% Similarity=0.145 Sum_probs=48.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i~ 70 (71)
++++|.++|+++|+++++|++.... ....+.+ .++|++++|+||+++++ .||++++++++++
T Consensus 168 dl~~I~~la~~~gi~lvvD~a~a~~----~~~~~~~--~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~ 232 (398)
T PRK07504 168 DIAAVAKIANQAGAKLVVDNVFATP----LFQKPLE--LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIE 232 (398)
T ss_pred CHHHHHHHHHHcCCEEEEECCcccc----ccCCchh--hCCCEEEeeccccccCCccceEEEEEeCcHHHH
Confidence 6899999999999999999983211 1112223 37999999999999875 5889999988764
No 68
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.84 E-value=3.3e-09 Score=75.36 Aligned_cols=63 Identities=14% Similarity=0.102 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i~ 70 (71)
.++++|+++||++|+++++|.+.-. +...+.+..++|++..|++|+++++ .||+++++++.++
T Consensus 152 ~dl~~I~~la~~~g~~livD~t~a~------g~~~~pl~~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~ 217 (377)
T TIGR01324 152 QDIPAIAKAARNPGIVIMIDNTWAA------GLLFKPLEHGVDISIQAGTKYLVGHSDIMIGTVVANARTWD 217 (377)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcc------ccccCccccCceEEEecCceeccCCCCceEEEEEeCHHHHH
Confidence 4789999999999999999988322 2211223358999999999999987 4788898887654
No 69
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=98.83 E-value=6.1e-09 Score=73.10 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|++..+. ....++.+ .++|.+++|+||++|.+..|++++++++++
T Consensus 177 ~~~~~i~~l~~~~g~~~ivD~a~~~g---~~~~~~~~--~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 240 (401)
T PRK10874 177 PDLARAITLAHQAGMVVMVDGAQGAV---HFPADVQA--LDIDFYAFSGHKLYGPTGIGVLYGKSELLE 240 (401)
T ss_pred CCHHHHHHHHHHcCCEEEEECCcccc---cccCCchh--cCCCEEEEecccccCCCccEEEEEchHHHh
Confidence 47899999999999999999995321 12233333 369999999999666444589999998875
No 70
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=98.83 E-value=8.1e-09 Score=72.06 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~ 67 (71)
.++++|.++|+++|+++|+|++.-+ .....++.+ .++|++++|+||++|.|..|+++.+++
T Consensus 157 ~~~~~I~~la~~~g~~~ivD~a~~~---g~~~~~~~~--~~~D~~~~s~~K~~gp~G~g~l~vr~~ 217 (382)
T TIGR03403 157 FPIKEIGEICKERGVLFHTDAVQAI---GKIPVDVQK--AGVDFLSFSAHKFHGPKGVGGLYIRKG 217 (382)
T ss_pred cCHHHHHHHHHHcCCEEEEechhhc---CCCccCccc--cCCCEEEEcchhhCCCCceEEEEECCC
Confidence 4689999999999999999998422 111122222 579999999999877664456654443
No 71
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=98.83 E-value=5.6e-09 Score=73.59 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|++... .....++.+ .++|++++|+||++|.+..|+++.++++++
T Consensus 181 ~~~~~i~~~~~~~~~~vivD~a~~~---g~~~~~~~~--~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~ 244 (406)
T PRK09295 181 NPLAEMIALAHQHGAKVLVDGAQAV---MHHPVDVQA--LDCDFYVFSGHKLYGPTGIGILYVKEALLQ 244 (406)
T ss_pred CCHHHHHHHHHHcCCEEEEEccccc---CccccCchh--cCCCEEEeehhhccCCCCcEEEEEchHhHh
Confidence 4689999999999999999998532 112223333 478999999999666443478888887754
No 72
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=98.81 E-value=7.9e-09 Score=73.27 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|++..+. ....++.+ .++|++.+|+||++|.+..|+++.++++++
T Consensus 190 ~~~~~I~~l~~~~g~~vivD~a~~~g---~~~~~~~~--~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 253 (424)
T PLN02855 190 LPVEDIVHWAHAVGAKVLVDACQSVP---HMPVDVQT--LGADFLVASSHKMCGPTGIGFLWGKSDLLE 253 (424)
T ss_pred CCHHHHHHHHHHcCCEEEEEhhhhcC---CcCCCchh--cCCCEEEeecccccCCCccEEEEEchhhhh
Confidence 46899999999999999999995321 12223333 368999999999655333478988888765
No 73
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=98.81 E-value=5.8e-09 Score=73.77 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|.+... .....++ ..++|++++|++|+++++ .||++++++++++
T Consensus 156 ~dl~~I~~la~~~gi~livD~a~~~---~~~~~pl---~~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~ 221 (380)
T TIGR01325 156 VDIAALAELAHAIGALLVVDNVFAT---PVLQQPL---KLGADVVVYSATKHIDGQGRVMGGVIAGSEELMA 221 (380)
T ss_pred eCHHHHHHHHHHcCCEEEEECCCcc---cccCCch---hhCCCEEEeeccceecCCCCeEEEEEEeCHHHHH
Confidence 3689999999999999999988321 1112222 247899999999999876 5789999988765
No 74
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=98.81 E-value=2e-09 Score=75.94 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=46.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce-eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i~ 70 (71)
.++++|++ |++|+++++||++.+ .....++.+ +|.+++|+|||+++|. .|+++.++++++
T Consensus 153 ~pi~~I~~--~~~g~~~vVDa~qs~---G~~pidv~~----iD~~~~s~~K~l~~P~G~g~l~v~~~~~~ 213 (378)
T PRK03080 153 VPVARWIG--ADREGLTICDATSAA---FALPLDWSK----LDVYTFSWQKVLGGEGGHGMAILSPRAVE 213 (378)
T ss_pred ccchhhcc--ccCCCeEEEeccccc---ccCCCCHHH----CcEEEEehhhhCCCCCceEEEEECHHHHH
Confidence 46788888 899999999999544 223333443 6999999999999875 579999988875
No 75
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=98.80 E-value=7.9e-09 Score=71.58 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh-cCCcEEEEcCCCCCcccee-EEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC-ASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~-~~~D~v~~s~~K~lg~p~g-g~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|++.- .|..+-++. .++|++.+|+||++++|.| |+++.++++++
T Consensus 148 ~~~~~i~~l~~~~~~~livDa~~~------~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~ 212 (368)
T PRK13479 148 NPLDEIAAVAKRHGKRLIVDAMSS------FGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELE 212 (368)
T ss_pred cCHHHHHHHHHHcCCEEEEEcccc------cCCccccccccCceEEEecCccccccCCCceEEEECHHHHH
Confidence 468999999999999999997732 232222222 3789999999999877655 88888888764
No 76
>PRK07050 cystathionine beta-lyase; Provisional
Probab=98.80 E-value=6.6e-09 Score=74.09 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=47.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc----eeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP----VGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p----~gg~l~g~~~~i~ 70 (71)
.++++|+++|+++|+++++|++.. .+...+.+..++|++..|++|++++. .|+++++++++++
T Consensus 167 ~di~~I~~ia~~~gi~livD~a~a------~~~~~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~ 233 (394)
T PRK07050 167 PDVPAITAAARARGVVTAIDNTYS------AGLAFKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHA 233 (394)
T ss_pred hhHHHHHHHHHHcCCEEEEECCcc------cccccCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHH
Confidence 578999999999999999999821 22222334458999999999988653 4557777887765
No 77
>PLN02724 Molybdenum cofactor sulfurase
Probab=98.80 E-value=7.5e-09 Score=79.42 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHhc--------CCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCcccee-EEEEecccccc
Q psy15462 2 SIDPQLKARCQEH--------NIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~--------gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~g-g~l~g~~~~i~ 70 (71)
.++++|.++++.+ ++++++|||+.+ .+...+++++ ++|+++||+|||+|+|.| |+|+.++++++
T Consensus 209 ~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~---g~~piDv~~~--~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~~ 281 (805)
T PLN02724 209 FPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC---GTSPPDLSRY--PADFVVVSFYKIFGYPTGLGALLVRRDAAK 281 (805)
T ss_pred CCHHHHHHHHHhcccccccCcceEEEeehhhhc---CCCCCChhhc--CCCEEEEecceeccCCCCceEEEEehhhhh
Confidence 3566665544432 368999999544 3344556653 799999999999998974 78888877653
No 78
>PLN02409 serine--glyoxylate aminotransaminase
Probab=98.79 E-value=5.3e-09 Score=74.18 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=47.8
Q ss_pred CcHHHHHHH--HHhcCCcEEEecccchHHhhhCCCCHHHHh-cCCcEEEEcCCCCCccce-eEEEEecccccc
Q psy15462 2 SIDPQLKAR--CQEHNIPVHMDGARVFNAASYLGLPLAEVC-ASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~--a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~-~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i~ 70 (71)
-++++|.++ ||++|+++++|++.. .|..+-++. .++|++++|+|||+++|. .|+++.++++++
T Consensus 154 ~~~~~i~~l~~~~~~g~~~vvD~v~s------~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~ 220 (401)
T PLN02409 154 NDLAGVRKLLDCAQHPALLLVDGVSS------IGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALE 220 (401)
T ss_pred CCHHHHHHHHhhhccCcEEEEEcccc------cCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHH
Confidence 368889999 999999999999842 222222221 379999999999998876 578888887764
No 79
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=98.79 E-value=1e-08 Score=71.42 Aligned_cols=61 Identities=15% Similarity=0.090 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce-eEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~ 68 (71)
.++++|.++||++|+++|+|+++.+. ....++.+ .++|++++|+||+ ++|. .|+++.++++
T Consensus 153 ~~~~~I~~l~~~~g~~vivD~~~~~g---~~~~~~~~--~~~D~~~~s~~K~-~gp~G~g~l~v~~~~ 214 (379)
T TIGR03402 153 FPIEEIGEIAKERGALFHTDAVQAVG---KIPIDLKE--MNIDMLSLSGHKL-HGPKGVGALYIRKGT 214 (379)
T ss_pred ccHHHHHHHHHHcCCEEEEECccccc---ccccCccc--CCCCEEEEcHHHc-CCCCceEEEEECCCC
Confidence 46889999999999999999985331 11222233 5899999999995 5565 4677666654
No 80
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.78 E-value=1.4e-08 Score=73.49 Aligned_cols=58 Identities=26% Similarity=0.305 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~ 65 (71)
.++++|+++||++|+++++|++... .....++ .-++|++++|+||+++++. ||+++.+
T Consensus 166 ~Di~~I~~la~~~gi~livD~t~a~---~~~~~pl---~~GaD~vv~S~tK~l~g~g~~~gG~v~~~ 226 (433)
T PRK08134 166 LDIPTVAAIAHEAGVPLLVDSTFTT---PYLLRPF---EHGADLVYHSATKFLGGHGTAIGGVLVDG 226 (433)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCcc---cccCCch---hcCCCEEEeccccccCCCCCceEEEEEec
Confidence 4789999999999999999998422 1122222 3589999999999999874 6777643
No 81
>PRK07503 methionine gamma-lyase; Provisional
Probab=98.78 E-value=7e-09 Score=74.06 Aligned_cols=63 Identities=19% Similarity=0.212 Sum_probs=49.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|.+... ...+.++ ..++|++++|++|+++++. ||++++++++++
T Consensus 167 ~di~~I~~la~~~gi~lIvD~a~a~---~~~~~~l---~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~ 232 (403)
T PRK07503 167 VDIAAVAEIAHGAGAKVVVDNTYCT---PYLQRPL---ELGADLVVHSATKYLGGHGDITAGLVVGGKALAD 232 (403)
T ss_pred eCHHHHHHHHHHcCCEEEEECCCcc---cccCCch---hhCCCEEEccccccccCCCceeEEEEEcCHHHHH
Confidence 3689999999999999999998421 1123333 2488999999999999874 788889888764
No 82
>PRK14012 cysteine desulfurase; Provisional
Probab=98.78 E-value=1.2e-08 Score=71.94 Aligned_cols=60 Identities=25% Similarity=0.346 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCcccee-EEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~g-g~l~g~~~ 67 (71)
.++++|.++||++|+++++|+|+.+. ....++.+ .++|+++||+||.+| |.| |+++.+++
T Consensus 161 ~~~~~I~~la~~~g~~vivD~a~~~g---~~~~~~~~--~~~D~~~~s~~K~~g-p~g~G~l~~~~~ 221 (404)
T PRK14012 161 QDIAAIGEICRERGIIFHVDAAQSVG---KVPIDLSK--LKVDLMSFSAHKIYG-PKGIGALYVRRK 221 (404)
T ss_pred hhHHHHHHHHHHcCCEEEEEcchhcC---CcccCccc--CCCCEEEEehhhccC-CCceEEEEEecC
Confidence 46899999999999999999995331 11122332 469999999999665 543 55555444
No 83
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=98.76 E-value=1.1e-08 Score=73.17 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=48.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i~ 70 (71)
-++++|.++||++|+++++|.+... .....+ +..++|++.+|++|+++++ +||++++++++++
T Consensus 166 ~dl~~I~~la~~~gi~livD~t~a~---~~~~~~---l~~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~ 231 (398)
T PRK08249 166 VDIERLAAAAKKVGALVVVDNTFAT---PINQNP---LALGADLVIHSATKFLSGHADALGGVVCGSKELME 231 (398)
T ss_pred CCHHHHHHHHHHcCCEEEEECCcCc---cccCCc---hhhCCCEEeccCceecCCCCCceEEEEECCHHHHH
Confidence 3589999999999999999988321 111222 2358999999999999875 5889999988765
No 84
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=98.75 E-value=1.1e-08 Score=72.65 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEe-ccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAG-PEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g-~~~~i 69 (71)
.++++|.++|+++|+++++|.+.-. .....++ ..++|++++|++|++++| .||+++. +++++
T Consensus 163 ~dl~~I~~la~~~gi~lIvD~a~a~---~~~~~p~---~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~ 228 (388)
T PRK07811 163 TDIAALAELAHDAGAKVVVDNTFAS---PYLQQPL---ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELD 228 (388)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCc---cccCCch---hhCCcEEEecCceeecCCCCcEEEEEEECCHHHH
Confidence 5789999999999999999987211 1122222 348999999999999998 3665554 56554
No 85
>PRK09028 cystathionine beta-lyase; Provisional
Probab=98.75 E-value=7.7e-09 Score=74.21 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i 69 (71)
.++++|+++||++|+++++|.+.- .+...+-+.-++|++..|+|||++++ ++|++++++++.
T Consensus 163 ~dl~~I~~la~~~g~~lvvD~t~a------~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~ 227 (394)
T PRK09028 163 QDVPTLSRIAHEHDIVVMLDNTWA------SPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHW 227 (394)
T ss_pred HHHHHHHHHHHHcCCEEEEECCcc------ccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHH
Confidence 468999999999999999998821 12111112358999999999999999 366778777654
No 86
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=98.74 E-value=1.2e-08 Score=72.47 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i~ 70 (71)
.++++|.++||++|+++++|.+... .....++ ..++|++++|+||+++++ .||++++++++++
T Consensus 163 ~dl~~I~~la~~~gi~livD~t~~~---~~~~~pl---~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~ 228 (390)
T PRK08133 163 ADIAALAEIAHAAGALLVVDNCFCT---PALQQPL---KLGADVVIHSATKYLDGQGRVLGGAVVGSKELME 228 (390)
T ss_pred CCHHHHHHHHHHcCCEEEEECCCcc---cccCCch---hhCCcEEEeecceeecCCcceEeEEEEcCHHHHH
Confidence 3689999999999999999987311 1112222 247899999999999876 5889999887654
No 87
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=98.74 E-value=1.4e-08 Score=71.99 Aligned_cols=61 Identities=25% Similarity=0.213 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEe-cccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAG-PEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g-~~~~ 68 (71)
-++++|+++||++|+++++|++... .....++ + .++|++.+|++|++++|. +|+++. ++++
T Consensus 148 ~dl~~I~~la~~~g~~vivD~a~~~---~~~~~~l-~--~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~ 212 (378)
T TIGR01329 148 VDIRKISEMAHAQNALVVVDNTMMS---PLLCNPL-E--LGADIVYHSATKFLAGHSDVMAGVLAVKGEEI 212 (378)
T ss_pred ecHHHHHHHHHHcCCEEEEECCCcc---cccCChh-h--cCCcEEEEecceeccCCccceeEEEEeCcHHH
Confidence 3689999999999999999998421 1122222 3 489999999999999873 677766 4443
No 88
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=98.74 E-value=4.3e-09 Score=71.80 Aligned_cols=65 Identities=22% Similarity=0.226 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC-CCHHHHhcCCcEEEEcCCCCCccc-eeEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKGLGAP-VGSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~-~~~~~~~~~~D~v~~s~~K~lg~p-~gg~l~g~~~ 67 (71)
.++++|.++||++|+++++|+|.-... .+.+ .+......++|+++.|+||++++| +|+++..+.+
T Consensus 170 ~dl~~I~~~~~~~g~~livDeA~~~~~-~~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~ 236 (294)
T cd00615 170 YNLRKIVEEAHHRGLPVLVDEAHGAHF-RFHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGD 236 (294)
T ss_pred cCHHHHHHHHHhcCCeEEEECcchhhh-ccCcccCcchhhcCCcEEEEchhcccchHhHHHHHHhCCC
Confidence 478999999999999999998843210 0111 122222358999999999999886 4677766554
No 89
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=98.73 E-value=1.6e-08 Score=71.89 Aligned_cols=67 Identities=24% Similarity=0.309 Sum_probs=50.4
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH-----hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV-----CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~-----~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+++++.++|++||+.+++|.++-+......|....+. ..++|++++|.+|++| |.||++++++++++
T Consensus 156 ~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~gg~v~~~~~~~~ 227 (392)
T PLN03227 156 PLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SVGGMTVGSEEVVD 227 (392)
T ss_pred CHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-ccCcEEecCHHHHH
Confidence 5889999999999999999886543222223333332 2467999999999766 88889999988764
No 90
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=98.73 E-value=1.8e-08 Score=72.16 Aligned_cols=62 Identities=16% Similarity=0.218 Sum_probs=47.3
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i~ 70 (71)
++++|+++||++|+++++|.+.-. .....+ +..++|++.+|++|+++++ .||+++++++++.
T Consensus 173 dl~~I~~la~~~g~~vivD~a~a~---~~~~~~---~~~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~ 237 (403)
T PRK07810 173 DIAAVSELAHAAGAKVVLDNVFAT---PLLQRG---LPLGADVVVYSGTKHIDGQGRVLGGAILGDREYID 237 (403)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCc---cccCCh---hhcCCcEEEccCCceecCCcCceeEEEEeChHHHH
Confidence 689999999999999999988311 111122 2348999999999999875 4889999887653
No 91
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.73 E-value=2.4e-08 Score=78.59 Aligned_cols=64 Identities=16% Similarity=0.103 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC-CCHHHHhcCCcEEEEcCCCCCccce------eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKGLGAPV------GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~-~~~~~~~~~~D~v~~s~~K~lg~p~------gg~l~g~~~~i~ 70 (71)
+++++|+++||++|+.+++|||... ...+ .++.+ .++|++.||+||++++|. .|+++.+++++.
T Consensus 683 ~~I~eI~~iah~~Galv~vDgAq~~---a~~~l~~p~~--~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p 753 (993)
T PLN02414 683 EGIDEICDIIHDNGGQVYMDGANMN---AQVGLTSPGF--IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAP 753 (993)
T ss_pred chHHHHHHHHHHcCCEEEEEecCHH---hccCcCCccc--cCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcc
Confidence 5699999999999999999999533 2222 22345 489999999999888886 478888887653
No 92
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=98.72 E-value=1.4e-08 Score=69.28 Aligned_cols=68 Identities=26% Similarity=0.341 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|+++.+......+..+..+ ..+.|++..|+||+++.+ ||.+++++++++
T Consensus 149 ~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-gG~i~~~~~~~~ 219 (349)
T cd06454 149 APLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAV-GGYIAGSKELID 219 (349)
T ss_pred cCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhccc-CCEEECCHHHHH
Confidence 57899999999999999999986432111111111111 246899999999998875 678888887653
No 93
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=98.71 E-value=1.6e-08 Score=71.57 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEe-cccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAG-PEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g-~~~~i~ 70 (71)
.++++|+++||++|+++++|.+-. ......+ +..++|++.+|++|+++++. ||+++. ++++++
T Consensus 153 ~di~~I~~la~~~gi~vvvD~t~~---~~~~~~p---l~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~ 219 (364)
T PRK07269 153 FDIEKVAKLAHAKGAKVIVDNTFY---SPIYQRP---IELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYE 219 (364)
T ss_pred eCHHHHHHHHHHcCCEEEEECCCc---ccccCCc---hhhCCcEEEecCceeccCCCcccceEEEeCcHHHHH
Confidence 368999999999999999998821 1112333 33689999999999999864 777765 555543
No 94
>PRK08114 cystathionine beta-lyase; Provisional
Probab=98.70 E-value=2.3e-08 Score=71.95 Aligned_cols=62 Identities=11% Similarity=0.026 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHhcC--CcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHN--IPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~g--i~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i 69 (71)
.++++|+++||++| +++++|++... . +...+.+ -++|++.+|+||+++++ .+|++++++++.
T Consensus 164 ~DI~~Ia~ia~~~g~g~~lvVDnT~a~---p-~~~~pl~--~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~ 230 (395)
T PRK08114 164 HDVPAIVAAVRSVNPDAVIMIDNTWAA---G-VLFKALD--FGIDISIQAGTKYLVGHSDAMIGTAVANARCW 230 (395)
T ss_pred ecHHHHHHHHHHhCCCCEEEEECCCcc---c-cccCHHH--cCCcEEEEcCcccccCCCcceeEEEEcCHHHH
Confidence 47899999999985 99999998322 1 2244555 48999999999999999 678888877653
No 95
>KOG0629|consensus
Probab=98.69 E-value=1e-08 Score=75.06 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHH-H--hcCCcEEEEcCCCCCccce-eEEE
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAE-V--CASVDTVMFCLSKGLGAPV-GSIL 62 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~-~--~~~~D~v~~s~~K~lg~p~-gg~l 62 (71)
.|+|..|+++|.+|++|+|+||| |..........+. + .+.+|+|+.++||++|+|+ .+++
T Consensus 269 FDdL~~iadiC~k~~lWmHvDAA--wGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~ 332 (510)
T KOG0629|consen 269 FDDLNGIADICEKHKLWMHVDAA--WGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAF 332 (510)
T ss_pred cCcHHHHHHHHHhcCEEEEeecc--cccccccChhhHhhccCccccCceeecHHHhhcCcchhhHH
Confidence 47899999999999999999998 2211111111122 2 4889999999999999996 4443
No 96
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=98.68 E-value=2.8e-08 Score=68.91 Aligned_cols=69 Identities=25% Similarity=0.277 Sum_probs=49.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHH---HhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAE---VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~---~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|.+.-+.-....+.+..+ +....|+++.|+||+++++.+|.+++++++++
T Consensus 191 ~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~ 262 (397)
T PRK06939 191 APLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVID 262 (397)
T ss_pred CCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHHHH
Confidence 5789999999999999999988421100001111222 22357899999999997778899999988765
No 97
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.67 E-value=5.3e-08 Score=70.66 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~ 66 (71)
.++++|+++||++|+++++|++... +.-...+..++|++.+|+||++|++ +||++++++
T Consensus 172 ~Dl~~I~~la~~~gi~liVD~t~a~------~~~~~pl~~GaDivv~S~tK~lgg~G~~i~G~vv~~~ 233 (436)
T PRK07812 172 LDIPGVAEVAHEAGVPLIVDNTIAT------PYLIRPLEHGADIVVHSATKYLGGHGTAIAGVIVDGG 233 (436)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCcc------cccCCchhcCCCEEEEecccccCCCCCeEEEEEEcCC
Confidence 4789999999999999999998321 1111223358999999999999987 467777644
No 98
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=98.66 E-value=2.3e-08 Score=71.05 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEe-ccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAG-PEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g-~~~~i 69 (71)
.++++|+++||++|+++++|.+.-. ...+.++ ..++|++.+|++|++++|. ||+++. ++++.
T Consensus 151 ~di~~I~~la~~~gi~vivD~t~a~---~~~~~p~---~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~ 216 (380)
T PRK06176 151 TDLAQCASVAKDHGLLTIVDNTFAT---PYYQNPL---LLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALA 216 (380)
T ss_pred cCHHHHHHHHHHcCCEEEEECCccc---cccCCcc---ccCCCEEEecCceeccCCccceeeEEEecHHHHH
Confidence 3689999999999999999988321 1223332 3589999999999999873 787766 44543
No 99
>PRK07671 cystathionine beta-lyase; Provisional
Probab=98.66 E-value=3.8e-08 Score=69.79 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEE-Eecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSIL-AGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l-~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|.+... ...+.+ +..++|++++|++|++++| .+|++ ++++++++
T Consensus 151 ~dl~~I~~la~~~g~~lvvD~a~~~---~~~~~p---~~~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~ 217 (377)
T PRK07671 151 TDIKKISTIAKEKGLLTIVDNTFMT---PYWQSP---ISLGADIVLHSATKYLGGHSDVVAGLVVVNSPELAE 217 (377)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCc---cccCCh---hhhCCeEEEecCcccccCCccceeEEEEeCcHHHHH
Confidence 4789999999999999999988311 112222 2358899999999999988 46655 45666654
No 100
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=98.65 E-value=7.1e-08 Score=67.55 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce-eEEEEeccccccC
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFIQK 71 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i~~ 71 (71)
.++++|.++|+++|+++++|.|.... ..+.+..+ .+.|+++.|+||+++++. .|++++++++|++
T Consensus 163 ~~l~~i~~la~~~~~~livDea~~~g---~~~~~~~~--~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~ 228 (370)
T TIGR02539 163 PDAGKVAKVCREKGVPLLLNCAYTVG---RMPVSAKE--IGADFIVGSGHKSMAASGPCGVLGMSEEWEDI 228 (370)
T ss_pred cCHHHHHHHHHHcCCeEEEECccccC---CcCCCHHH--cCCCEEEeeCcccccCCCCEEEEEECHHHHhh
Confidence 57899999999999999999986542 12333333 368999999999988543 3788999998763
No 101
>PRK06460 hypothetical protein; Provisional
Probab=98.65 E-value=3.8e-08 Score=69.68 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=47.8
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i~ 70 (71)
++++|.++|+++|+++++|.+.. .+.....+..++|++..|+||+++++ .+|++++++++++
T Consensus 148 d~~~I~~la~~~g~~vivDea~~------~~~~~~~l~~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~ 212 (376)
T PRK06460 148 DITELSKVCKENGSILIVDATFS------TPINQKPLELGADIVVHSASKFLAGHNDVIAGLAAGYGKLLN 212 (376)
T ss_pred CHHHHHHHHHHcCCEEEEECCcC------ccccCChhhcCCCEEEeecceeccCCCCceEEEEecCHHHHH
Confidence 57899999999999999998731 11222223346899999999999875 5889999988765
No 102
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.65 E-value=6.7e-08 Score=69.63 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=44.0
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEec
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGP 65 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~ 65 (71)
++++|.++||++|+++++|.+... +.....+..++|++++|+||++|++ +||+++..
T Consensus 166 dl~~I~~la~~~gi~livD~a~a~------~~~~~pl~~gaDivv~S~tK~lgg~~~~~gG~v~~~ 225 (427)
T PRK05994 166 DIAAIAEVAHRAGLPLIVDNTLAS------PYLIRPIEHGADIVVHSLTKFLGGHGNSMGGIIVDG 225 (427)
T ss_pred CHHHHHHHHHHcCCEEEEECCccc------cccCCccccCCcEEEEcCccccCCCCCcEEEEEEeC
Confidence 689999999999999999988421 1111222358999999999999986 58888753
No 103
>PLN02242 methionine gamma-lyase
Probab=98.64 E-value=6.1e-08 Score=69.79 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i~ 70 (71)
.++++|+++||++|+++++|.+.- ....++.++ ++|++..|++|+++++ +||++++++++++
T Consensus 180 ~dl~~I~~la~~~gi~livDea~~-----~~~~~~~~~--g~divv~S~SK~l~g~g~~~gG~iv~~~~li~ 244 (418)
T PLN02242 180 ADIPELARIAHEKGVTVVVDNTFA-----PMVLSPARL--GADVVVHSISKFISGGADIIAGAVCGPAELVN 244 (418)
T ss_pred cCHHHHHHHHHHhCCEEEEECCCC-----ccCCCHHHc--CCcEEEEeCccccCCCCCceEEEEEcCHHHHH
Confidence 368999999999999999998731 122334443 6999999999999776 3789999998875
No 104
>PRK07179 hypothetical protein; Provisional
Probab=98.63 E-value=5.1e-08 Score=68.85 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=48.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC-HHHH--hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP-LAEV--CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-~~~~--~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|.++.+......|.+ +..+ ...+|++++|+||++|++ +|++++++++++
T Consensus 198 ~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~-~G~l~~~~~~~~ 268 (407)
T PRK07179 198 APLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGR-AGIITCPRELAE 268 (407)
T ss_pred ccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhcc-CeEEEeCHHHHH
Confidence 4689999999999999999988643211111222 2222 235799999999999866 778888887753
No 105
>PLN02509 cystathionine beta-lyase
Probab=98.62 E-value=5.8e-08 Score=71.08 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~ 67 (71)
.++++|+++||++|+++++|.|... ...+.++ ..++|++.+|++|++++| +||+++.+.+
T Consensus 234 ~Dl~~I~~lAk~~g~~lIVD~A~a~---~~~~~pl---~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~ 296 (464)
T PLN02509 234 SDIRKIAEMAHAQGALVLVDNSIMS---PVLSRPL---ELGADIVMHSATKFIAGHSDVMAGVLAVKGE 296 (464)
T ss_pred HHHHHHHHHHHHcCCEEEEECCccc---cccCChh---hcCCcEEEecCcccccCCCccceeEEEeccH
Confidence 4689999999999999999998322 1123322 358999999999999986 4788876544
No 106
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=98.61 E-value=6.8e-08 Score=69.88 Aligned_cols=61 Identities=18% Similarity=0.095 Sum_probs=45.0
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEec
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~ 65 (71)
++++++++|++.|..++.|.|++..-.+ .|.-+.-+ .+||++++|.||.|.+|+||+|+.+
T Consensus 185 d~~~~reIad~vga~l~~D~sH~~GLIa-~g~~~~P~-~~ADvvt~sThKtl~GPrggiI~~~ 245 (399)
T PF00464_consen 185 DFKRFREIADEVGAYLMADISHIAGLIA-GGLFPNPF-PYADVVTGSTHKTLRGPRGGIILTN 245 (399)
T ss_dssp -HHHHHHHHHHTT-EEEEE-TTTHHHHH-TTSS--GC-CTSSEEEEESSGGG-SSS-EEEEES
T ss_pred CHHHHHHHHHhcCcEEEeccccccccee-hheecCcc-ccceEEEeeccccccccCceEEEEc
Confidence 6789999999999999999998765433 34333323 5699999999999999999999888
No 107
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=98.60 E-value=3.6e-08 Score=70.15 Aligned_cols=60 Identities=32% Similarity=0.467 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH-----hcCC---cEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV-----CASV---DTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~-----~~~~---D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++.++.++|++||||+++|.| ||+|+..+ ...+ =++|+|.|| +|.|. .|++++++++|+
T Consensus 199 eE~~kldalA~~~giPliIDnA--------Yg~PFP~iifsd~~~~w~~NiilC~SLSK-~GLPG~R~GIiIane~viq 268 (417)
T COG3977 199 EELAKLDALARQHGIPLIIDNA--------YGVPFPGIIFSDATPLWNENIILCMSLSK-LGLPGSRCGIIIANEKVIQ 268 (417)
T ss_pred HHHHHHHHHhhhcCCcEEEecc--------cCCCCCceecccccccCCCCEEEEeehhh-cCCCCcceeEEEccHHHHH
Confidence 5789999999999999999999 88887543 2222 289999999 89995 789999999875
No 108
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.60 E-value=1.1e-07 Score=74.70 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC-CHHHHhcCCcEEEEcCCCCCcccee------EEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL-PLAEVCASVDTVMFCLSKGLGAPVG------SILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~-~~~~~~~~~D~v~~s~~K~lg~p~g------g~l~g~~~~ 68 (71)
+++++|+++||++|+++|+|||... ...+. ++.+ .++|++++|+|||++.|.| |.+..++.+
T Consensus 657 ~~I~eI~~i~h~~G~~v~VDgA~~~---al~~l~~pg~--~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l 725 (954)
T PRK05367 657 ETIREICEIVHEHGGQVYLDGANMN---AQVGLARPGD--IGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHL 725 (954)
T ss_pred CCHHHHHHHHHHcCCEEEEECcChh---hccCCCChhh--cCCCEEEecCcccCCCCcCCCCCceEEEeecccc
Confidence 5799999999999999999999532 11222 2334 5899999999999877763 466655544
No 109
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.59 E-value=1.5e-07 Score=68.11 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~ 67 (71)
-++++|+++||++|+++++|++.. .+.....+..++|++..|+||++|+| .||+++.+.+
T Consensus 166 ~di~~I~~la~~~gi~vIvD~t~a------~~~~~~pl~~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~ 228 (431)
T PRK08248 166 LDIEAVAAIAHEHGIPLIVDNTFA------SPYLLRPIEHGADIVVHSATKFIGGHGTSIGGVIVDSGK 228 (431)
T ss_pred cCHHHHHHHHHHcCCEEEEeCCCC------ccccCChhHcCCCEEEEcCccccCCCCCceEEEEEeCCc
Confidence 368999999999999999998821 11111223358999999999999988 5788886543
No 110
>PRK02948 cysteine desulfurase; Provisional
Probab=98.59 E-value=8.6e-08 Score=66.80 Aligned_cols=62 Identities=16% Similarity=0.136 Sum_probs=45.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~ 68 (71)
.++++|.++|+++|+++|+|++.-+. ..+.++.+ .++|++++|+||++|.|..|+++.++++
T Consensus 155 ~~~~~I~~l~~~~~~~vivD~~~~~g---~~~~~~~~--~~~d~~~~s~~K~~gp~G~G~l~~~~~~ 216 (381)
T PRK02948 155 QPIAEIGALLKKYNVLFHSDCVQTFG---KLPIDVFE--MGIDSLSVSAHKIYGPKGVGAVYINPQV 216 (381)
T ss_pred hhHHHHHHHHHHcCCEEEEEChhhcc---ccccCccc--CCCCEEEecHHhcCCCCcEEEEEEcCCC
Confidence 46899999999999999999874331 12222333 4799999999998775545677666653
No 111
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=98.58 E-value=1.2e-07 Score=67.91 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~ 68 (71)
.++++|.++|+++|+++++|.+... .....+ +..++|+++.|++|+++++ +|+++++++++
T Consensus 159 ~dl~~I~~la~~~~i~livD~t~~~---~~~~~~---l~~g~Divv~S~sK~l~g~G~~lGg~v~~~~~~ 222 (418)
T TIGR01326 159 PDIEAIAEVAHAHGVPLIVDNTFAT---PYLCRP---IDHGADIVVHSATKYIGGHGTAIGGVIVDGGKF 222 (418)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCch---hhcCCc---hhcCCeEEEECccccccCCccceEEEEEecccc
Confidence 3689999999999999999988421 111122 2357999999999999876 58888876543
No 112
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=98.57 E-value=4.8e-08 Score=68.95 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEe-cccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAG-PEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g-~~~~i~ 70 (71)
.++++|.++|+++|+++++|+|+.+... +.+..+.+ .+.++++|+.+|.+.++.||+++. ++++++
T Consensus 135 ~d~~~i~~~a~~~gi~vi~D~a~a~g~~-~~~~~~g~--~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~ 201 (379)
T PRK11658 135 ADLDAIRAIGERYGIPVIEDAAHAVGTY-YKGRHIGA--RGTAIFSFHAIKNITCAEGGLVVTDDDELAD 201 (379)
T ss_pred CCHHHHHHHHHHcCCeEEEECCCccCCe-ECCeecCC--CCCEEEeCCCCCcCcccCceEEEECCHHHHH
Confidence 4689999999999999999999654321 23333333 356889999999998888887776 466654
No 113
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=98.57 E-value=7.5e-08 Score=69.04 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEe-cccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAG-PEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g-~~~~i~ 70 (71)
.++++|.++|+++|+++++|.+.... ....++ .-++|++.+|++|++++|. ||+++. ++++.+
T Consensus 162 ~dl~~I~~la~~~gi~vIvD~a~a~~---~~~~pl---~~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~ 228 (405)
T PRK08776 162 TDLRFVIEAAHKVGALTVVDNTFLSP---ALQKPL---EFGADLVLHSTTKYINGHSDVVGGAVVARDAELHQ 228 (405)
T ss_pred CCHHHHHHHHHHcCCEEEEECCCccc---ccCCcc---cccCCEEEecCceeecCCCCceEEEEEeCCHHHHH
Confidence 57899999999999999999884221 111122 2488999999999999873 565554 565543
No 114
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.56 E-value=1.6e-07 Score=67.72 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=44.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEecc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPE 66 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~ 66 (71)
++++|.++|+++|+++++|.+.-. +...+.+.-++|++.+|++|+++++ .||+++.++
T Consensus 161 dl~~I~~la~~~~i~vVvD~a~a~------~~~~~p~~~gaDivv~S~tK~l~G~g~~~gG~v~~~~ 221 (425)
T PRK06084 161 DIQALADAAHRHGVPLIVDNTVAT------PVLCRPFEHGADIVVHSLTKYIGGHGTSIGGIVVDSG 221 (425)
T ss_pred CHHHHHHHHHHcCCEEEEECCCcc------cccCChhhcCCCEEEECchhcccccccceeEEEEeCC
Confidence 589999999999999999988321 1111222358999999999999876 488888654
No 115
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.56 E-value=8.5e-08 Score=67.64 Aligned_cols=63 Identities=21% Similarity=0.143 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEe-cccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAG-PEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g-~~~~i~ 70 (71)
.++++|+++||++|+++++|++... ..+..+-+ .++|++..|+||++++|. +|.+++ ++++++
T Consensus 149 ~di~~I~~~a~~~g~~lvVD~t~~~----~~~~~p~~--~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~ 215 (366)
T PRK07582 149 CDLAALAAAAHAAGALLVVDNTTAT----PLGQRPLE--LGADLVVASDTKALTGHSDLLLGYVAGRDPELMA 215 (366)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCCC----ccccCchh--cCCcEEEecccccccCCCCeeEEEEEcCcHHHHH
Confidence 4789999999999999999998421 12333323 478999999999998864 466665 566543
No 116
>PRK06234 methionine gamma-lyase; Provisional
Probab=98.56 E-value=9.2e-08 Score=68.23 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHhc--CCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEH--NIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~--gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~~~~i~ 70 (71)
.++++|.++|+++ |+++++|.+-.. ...+.++ ..++|++.+|++|+++++. ||++++++++++
T Consensus 166 ~dl~~I~~la~~~~~~i~livDea~~~---~~~~~~l---~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~ 233 (400)
T PRK06234 166 TDIKAISNIAHENNKECLVFVDNTFCT---PYIQRPL---QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFIN 233 (400)
T ss_pred CCHHHHHHHHHhcCCCCEEEEECCCCc---hhcCCch---hhCCcEEEeeccccccCCCCceeEEEEecHHHHH
Confidence 4689999999997 999999987211 1122222 2479999999999998874 789999988765
No 117
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.53 E-value=1.3e-07 Score=74.18 Aligned_cols=52 Identities=27% Similarity=0.309 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC-HHHHhcCCcEEEEcCCCCCccce
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP-LAEVCASVDTVMFCLSKGLGAPV 58 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-~~~~~~~~D~v~~s~~K~lg~p~ 58 (71)
+++++|+++||++|..+++|||+. + ...+.. +.+ .++|++.+++|||++.|.
T Consensus 658 ~~V~eI~~iah~~Galv~vDgA~~-~--a~~~l~~Pg~--~GADi~~~s~HKtf~~P~ 710 (954)
T PRK12566 658 EGIREICEVVHQHGGQVYMDGANL-N--AQVGLARPAD--IGADVSHMNLHKTFCIPH 710 (954)
T ss_pred chHHHHHHHHHHcCCEEEEEeeCh-h--hccCCCChhh--cCCCEEEecCCcccCcCc
Confidence 469999999999999999999974 2 223333 455 499999999999999886
No 118
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=98.52 E-value=1.4e-07 Score=66.06 Aligned_cols=66 Identities=21% Similarity=0.381 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCC--CCCccceeEEEEe-ccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLS--KGLGAPVGSILAG-PEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~--K~lg~p~gg~l~g-~~~~i 69 (71)
.++++|.++|+++|+++++|+++.+... ..+.++.. +...|..+||+| |++..+.||+++. ++++.
T Consensus 135 ~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~~~~g~-~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~ 203 (380)
T TIGR03588 135 VDMQAIAALAKKHGLKIIEDASHALGAE-YGGKPVGN-CRYADATVFSFHPVKIITTAEGGAVTTNDEELA 203 (380)
T ss_pred CCHHHHHHHHHHcCCEEEEECCCcccCc-cCCEeCCC-ccccceEEEecCCCCcccccCceEEEECCHHHH
Confidence 4689999999999999999999755322 12222111 125699999987 9998888886654 45443
No 119
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=98.52 E-value=1.5e-07 Score=67.39 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=44.7
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEec-ccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAGP-EEF 68 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~-~~~ 68 (71)
++++|.++|+++|+++++|.+.... ....++ .-++|++.+|+||++++|. ||+++++ +++
T Consensus 156 dl~~I~~la~~~gi~vIvDea~~~~---~~~~pl---~~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~ 219 (388)
T PRK08861 156 DIAELCQKAKAVGALVAVDNTFLTP---VLQKPL---ELGADFVIHSTTKYINGHSDVIGGVLITKTKEH 219 (388)
T ss_pred CHHHHHHHHHHcCCEEEEECCcccc---ccCCCc---ccCCCEEEeecceeccCCCcceeEEEEecHHHH
Confidence 5789999999999999999883221 111222 2489999999999999984 7877664 444
No 120
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=98.50 E-value=1.4e-07 Score=64.42 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCC--CCCccceeEEEEec-cccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLS--KGLGAPVGSILAGP-EEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~--K~lg~p~gg~l~g~-~~~i 69 (71)
.++++|.++|+++|+++++|+++.+.... .+.+ +....|..++|++ |+++.+.||+++.+ ++++
T Consensus 120 ~~~~~i~~l~~~~~i~li~D~a~~~g~~~-~~~~---~~~~~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~ 186 (352)
T cd00616 120 ADMDAIMAIAKRHGLPVIEDAAQALGATY-KGRK---VGTFGDAGAFSFHPTKNLTTGEGGAVVTNDEELA 186 (352)
T ss_pred CCHHHHHHHHHHcCCeEEEECCCCCCCeE-CCEE---cccCcceeEEcCCCCCCCcccCceEEEECCHHHH
Confidence 46899999999999999999996543211 1211 1233577777755 99987778866654 4654
No 121
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=98.49 E-value=2.9e-07 Score=66.61 Aligned_cols=56 Identities=23% Similarity=0.474 Sum_probs=43.2
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEe
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAG 64 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g 64 (71)
+++.|+++||+||+|+++|.. + +..++..|+. -++|+|+-|.+||+|+- +||+|+-
T Consensus 165 Die~ia~iAh~~gvpliVDNT--~-atpyl~rP~~---hGADIVvHS~TK~igGhGt~iGG~iVD 223 (426)
T COG2873 165 DIEAIAEIAHRHGVPLIVDNT--F-ATPYLCRPIE---HGADIVVHSATKYIGGHGTAIGGVIVD 223 (426)
T ss_pred CHHHHHHHHHHcCCcEEEecC--C-Ccceecchhh---cCCCEEEEeecccccCCccccceEEEe
Confidence 689999999999999999954 1 0123334444 59999999999999987 4887763
No 122
>PRK08064 cystathionine beta-lyase; Provisional
Probab=98.47 E-value=1.9e-07 Score=66.42 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEe-cccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAG-PEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g-~~~~i~ 70 (71)
.++++|.++||++|+++++|++... .....++ + .++|++.+|+||++++|. +|+++. ++++++
T Consensus 155 ~dl~~I~~la~~~g~~vvvD~a~~~---~~~~~~~-~--~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~ 221 (390)
T PRK08064 155 TDIRGVVKLAKAIGCLTFVDNTFLT---PLLQKPL-D--LGADVVLHSATKFLAGHSDVLAGLAVVKDEELAQ 221 (390)
T ss_pred ccHHHHHHHHHHcCCEEEEECCCCc---ccccCch-h--hCCcEEEeecceeccCCccceeEEEEeCCHHHHH
Confidence 3689999999999999999988321 1111122 3 479999999999998874 576554 456654
No 123
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=98.46 E-value=2e-07 Score=66.39 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=45.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEE-ecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILA-GPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~-g~~~~i~ 70 (71)
++++|.++|+++|+++++|.+... .....+ +..++|++..|++|+++++. +|+++ +++++++
T Consensus 155 di~~I~~ia~~~g~~vivDeay~~---~~~~~p---l~~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~ 220 (386)
T PRK08045 155 DIAKICHLAREAGAVSVVDNTFLS---PALQNP---LALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVT 220 (386)
T ss_pred CHHHHHHHHHHcCCEEEEECCCCc---cccCCc---hhhCCCEEEeecceeccCCCCceeEEEEeCcHHHHH
Confidence 588999999999999999988321 111122 33588999999999998775 56554 4666553
No 124
>PLN02483 serine palmitoyltransferase
Probab=98.46 E-value=2.8e-07 Score=67.46 Aligned_cols=68 Identities=31% Similarity=0.433 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH----hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV----CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~----~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|-+.-+......|..+.++ ....|++..|+||.+|++ ||.+++++++|+
T Consensus 257 ~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~-GG~i~~~~~li~ 328 (489)
T PLN02483 257 CKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSC-GGYIAGSKELIQ 328 (489)
T ss_pred cCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccC-ceEEEcCHHHHH
Confidence 37899999999999999999885322111122223333 145799999999998865 789999998875
No 125
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=98.45 E-value=1.9e-07 Score=65.71 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEec-ccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGP-EEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~-~~~i~ 70 (71)
.++++|.++|+++|+++++|.+... .....++ ..++|++..|++|+++++ .+|+++++ +++++
T Consensus 153 ~dl~~I~~la~~~g~~lIvD~t~~~---~~~~~p~---~~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~ 219 (366)
T PRK08247 153 TDIAAIAKIAKKHGLLLIVDNTFYT---PVLQRPL---EEGADIVIHSATKYLGGHNDVLAGLVVAKGQELCE 219 (366)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCcc---ccccCch---hcCCcEEEeecceeccCCCceeeeEEecChHHHHH
Confidence 4689999999999999999987211 1122222 257999999999999986 67888875 55543
No 126
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.44 E-value=4.6e-07 Score=71.15 Aligned_cols=63 Identities=14% Similarity=0.041 Sum_probs=46.6
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce------eEEEEeccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV------GSILAGPEEFI 69 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~------gg~l~g~~~~i 69 (71)
++++|+++||++|.++++|||.... ...-.++.+ .++|++.+|+||+++.|. .|+++.++++.
T Consensus 646 ~I~eI~~iah~~G~~v~VDgAq~~a--l~~l~~Pg~--~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~ 714 (939)
T TIGR00461 646 TIQHACDIVHSFGGQVYLDGANMNA--QVGLTSPGD--LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLI 714 (939)
T ss_pred cHHHHHHHHHHcCCEEEEEecChhh--CCCCCCccc--cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhch
Confidence 3999999999999999999995331 111122334 489999999999776554 47888887654
No 127
>PRK05367 glycine dehydrogenase; Provisional
Probab=98.42 E-value=5.1e-07 Score=70.95 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCC-----CccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKG-----LGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~-----lg~p~gg~l~g~~~~i~ 70 (71)
+++++|++.||++|+.+++|+..+. .....++.++ +||++..++||| +|+|..|+++.++++++
T Consensus 222 ~d~~~i~~~ah~~Gal~~vda~~~A---l~~l~~pge~--GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r 290 (954)
T PRK05367 222 RDYTALIAAAHARGALVAVAADLLA---LTLLTPPGEM--GADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKR 290 (954)
T ss_pred ccHHHHHHHHHHcCCEEEEEehhhh---ccCCCChhhc--CCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHh
Confidence 5789999999999999999986432 2345567774 999999999998 78887889999988764
No 128
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=98.40 E-value=4.9e-07 Score=63.61 Aligned_cols=67 Identities=21% Similarity=0.284 Sum_probs=49.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC-CHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL-PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~-~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|-|........++. +..+ .+.|++..|+||++.++.+|.+++++++|+
T Consensus 155 ~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~--~~~divv~s~SKalaG~r~G~v~~~~~li~ 222 (346)
T TIGR03576 155 EDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALD--LGADLVVTSTDKLMDGPRGGLLAGRKELVD 222 (346)
T ss_pred HHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHH--cCCcEEEeccchhccccceEEEEeCHHHHH
Confidence 578999999999999999996632210000122 2222 257999999999987788999999999875
No 129
>PRK05939 hypothetical protein; Provisional
Probab=98.38 E-value=6e-07 Score=64.29 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~ 65 (71)
.++++|+++||++|+++++|++.. .+....-...++|++..|+||+++++. ||+++.+
T Consensus 148 ~dl~~I~~la~~~gi~livD~t~a------~~~~~~~~~~gaDivv~S~sK~~~g~g~~igg~v~~~ 208 (397)
T PRK05939 148 ADLAGIGALCRERGLLYVVDNTMT------SPWLFRPKDVGASLVINSLSKYIAGHGNALGGAVTDT 208 (397)
T ss_pred HhHHHHHHHHHHcCCEEEEECCcc------cccccCccccCCEEEEecCeecccCCCCeEEEEEecC
Confidence 468999999999999999998731 111111112489999999999999873 6666643
No 130
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=98.37 E-value=6e-07 Score=61.20 Aligned_cols=68 Identities=28% Similarity=0.228 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH----hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV----CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~----~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|.+.........+.+...+ ....|++..|+||+++++ ||.+++++++++
T Consensus 163 ~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~-gG~~~~~~~~~~ 234 (360)
T TIGR00858 163 APLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSY-GAYVAGSQALID 234 (360)
T ss_pred cCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhcc-CcEEEcCHHHHH
Confidence 47899999999999999999885321101111222222 135789999999988864 678889888764
No 131
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=98.36 E-value=3.5e-07 Score=66.26 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=50.9
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecc-cc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPE-EF 68 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~-~~ 68 (71)
++++++++|++.|..|.+|.|+++.-.+ .|.=+.-+ .+||+|+-+.||.|.+|+||+|..++ ++
T Consensus 182 d~~~~reIad~VGA~L~~DmAHiaGLVA-~G~~p~P~-~~AdvVTtTTHKTlrGPrGG~Il~~~eel 246 (413)
T COG0112 182 DFKRFREIADEVGAYLMVDMAHVAGLIA-GGVHPNPL-PHADVVTTTTHKTLRGPRGGIILTNDEEL 246 (413)
T ss_pred CHHHHHHHHHHhCceEEehHHHHHHHHh-cccCCCCC-CccceEeCCcccCCCCCCceEEEeccHHH
Confidence 6789999999999999999998775433 33222222 46999999999999999999998886 54
No 132
>KOG0628|consensus
Probab=98.35 E-value=1.8e-07 Score=68.91 Aligned_cols=64 Identities=16% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCcccee--EEEEecc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVG--SILAGPE 66 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~g--g~l~g~~ 66 (71)
.|++.++..+|+++|+|+|||+| +...++....++.+ .+.+|++.|..|||+-..+- ++-+.++
T Consensus 251 ~D~l~elg~Vc~~~glWLHVDAA--YAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~ 319 (511)
T KOG0628|consen 251 FDELEELGPVCREEGLWLHVDAA--YAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDG 319 (511)
T ss_pred cccHHHhcchhhhcCEEEEeehh--hccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecC
Confidence 37899999999999999999988 22222244445655 47899999999999988873 3445554
No 133
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.34 E-value=3.4e-07 Score=61.60 Aligned_cols=67 Identities=25% Similarity=0.256 Sum_probs=44.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH---HHH-hcCCcEEEEcCCCCCccc--eeEEEEecc-cccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL---AEV-CASVDTVMFCLSKGLGAP--VGSILAGPE-EFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~---~~~-~~~~D~v~~s~~K~lg~p--~gg~l~g~~-~~i~ 70 (71)
+++++|.++|+++|+++++|+|... ....+... ... ..+.|++..|++|+++.| ..|++++++ ++++
T Consensus 152 ~~l~~l~~~~~~~~~~~ivD~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~ 225 (350)
T cd00609 152 EELEELAELAKKHGILIISDEAYAE--LVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLE 225 (350)
T ss_pred HHHHHHHHHHHhCCeEEEEecchhh--ceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHH
Confidence 3577888999999999999998422 11112211 111 245789999999998733 456777777 6653
No 134
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=98.32 E-value=7.8e-07 Score=63.28 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=44.5
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEe-cccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAG-PEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g-~~~~i~ 70 (71)
++++|.++||++|+++++|.+.... ....+ +..++|++..|++|+++++ .+|+++. ++++++
T Consensus 154 dl~~I~~la~~~g~~vvvD~a~~~~---~~~~p---l~~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~ 219 (382)
T TIGR02080 154 DIAKICHLAKAVGAVVVVDNTFLSP---ALQNP---LALGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAE 219 (382)
T ss_pred CHHHHHHHHHHcCCEEEEECCCccc---ccCCc---hhhCCCEEEeecceeccCCCCceeEEEEeCCHHHHH
Confidence 5789999999999999999883211 01112 2247899999999999876 3676654 566543
No 135
>PRK06434 cystathionine gamma-lyase; Validated
Probab=98.29 E-value=1.4e-06 Score=62.38 Aligned_cols=59 Identities=19% Similarity=0.253 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEe-cccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAG-PEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g-~~~~ 68 (71)
.++++|+++||+++ +++|++. +....+.++. .++|++.+|.+|+++++. ||+++. ++++
T Consensus 165 ~Di~~I~~la~~~~--lvVD~t~---~s~~~~~pl~---~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~ 227 (384)
T PRK06434 165 PDIKNVSSFCHEND--VIVDATF---ASPYNQNPLD---LGADVVIHSATKYISGHSDVVMGVAGTNNKSI 227 (384)
T ss_pred ecHHHHHHHHHHcC--eEEECCC---CCcccCCchh---cCCCEEEeecccccCCCCCceEEEEecCcHHH
Confidence 47899999999998 5679982 2233344443 589999999999998865 787765 4443
No 136
>PRK09064 5-aminolevulinate synthase; Validated
Probab=98.27 E-value=1.4e-06 Score=61.36 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=48.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+++++|.|..+.-....|..+.+. ....|++..+++|.+|.+ ||.+++++++++
T Consensus 195 ~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~-GG~~~~~~~~~~ 265 (407)
T PRK09064 195 APIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM-GGYIAGSAALVD 265 (407)
T ss_pred cCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc-CceEecCHHHHH
Confidence 36899999999999999999885321001122223222 235689999999988765 788899988764
No 137
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=98.26 E-value=4.4e-07 Score=63.95 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=40.3
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCcccee-EEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~g-g~l~g~~~~i~ 70 (71)
++++| +|++|+.+++|++..+ .+...++.+ +|+++||++|++|+|.| ++++.++++++
T Consensus 146 pi~~I---~~~~g~~~iVDavqs~---g~~~idv~~----~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~ 204 (361)
T TIGR01366 146 PVRRP---EGSDDALVVIDATSGA---GGLPVDIAE----TDVYYFAPQKNFASDGGLWLAIMSPAALE 204 (361)
T ss_pred ccccc---cccCCCeEEEEcCccc---cCCCCCHHH----CCEEEEEchhhcCCCCceEEEEECHHHHh
Confidence 44454 6999999999999544 122333332 89999999999999844 34455776654
No 138
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.26 E-value=2.3e-06 Score=67.59 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=50.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC-CHHHHhcCCcEEEEcCCCCC-----ccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL-PLAEVCASVDTVMFCLSKGL-----GAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~-~~~~~~~~~D~v~~s~~K~l-----g~p~gg~l~g~~~~i~ 70 (71)
.++++|+++||++|+.+++ |+... ..... ++.++ +||+++.+++||+ |+|..|+++.++++++
T Consensus 250 ~dv~~I~~~ah~~GaL~iV-aad~l---al~~l~~pge~--GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r 318 (993)
T PLN02414 250 LDYAEFVKNAHANGVKVVM-ATDLL---ALTMLKPPGEW--GADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR 318 (993)
T ss_pred cCHHHHHHHHHHcCCEEEE-EECHH---HhcCCCCHhhc--cCcEEEECCCccccCCCCCCCCeeEEEECHHHHh
Confidence 5789999999999999999 76544 33344 57775 9999999999997 6666699999888753
No 139
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=98.25 E-value=1.2e-06 Score=60.90 Aligned_cols=68 Identities=22% Similarity=0.228 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC-HHH--HhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP-LAE--VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-~~~--~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|++||+++++|.+.........+.+ ... +....|++..|++|+++.+ ||.+++++++++
T Consensus 180 ~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~-gG~~~~~~~~~~ 250 (385)
T TIGR01825 180 APLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGVV-GGYAAGHKELIE 250 (385)
T ss_pred cCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhcC-CCEEecCHHHHH
Confidence 4789999999999999999988522100001111 111 1245788999999999865 678888888764
No 140
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=98.25 E-value=3.6e-06 Score=61.32 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=43.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCccce---eEEEEec
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLGAPV---GSILAGP 65 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~ 65 (71)
++++|+++||++|+++++|.+ +..|+ +-+.-++|++.-|.+|++++.. ||++++.
T Consensus 165 Di~~I~~iA~~~gi~livD~T--------~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~~ 224 (432)
T PRK06702 165 NFKEFSDAAKELEVPFIVDNT--------LATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVIDG 224 (432)
T ss_pred CHHHHHHHHHHcCCEEEEECC--------CCchhhCChhhcCCCEEEEccccccCCCcceeceEEEeC
Confidence 689999999999999999988 22221 1134689999999999999984 6777643
No 141
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=98.24 E-value=1.6e-06 Score=59.77 Aligned_cols=68 Identities=24% Similarity=0.240 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHH---HhcC-CcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAE---VCAS-VDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~---~~~~-~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|++||+++++|.+.........+..... +... -+++..|+||+++.+ ||.+++++++++
T Consensus 185 ~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~-Gg~~~~~~~~~~ 256 (385)
T PRK05958 185 APLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSS-GAAVLGSETLID 256 (385)
T ss_pred CCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccC-CcEEEcCHHHHH
Confidence 5789999999999999999988532100101222221 2122 347789999999754 678888877654
No 142
>PRK05967 cystathionine beta-lyase; Provisional
Probab=98.24 E-value=1.4e-06 Score=62.71 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i 69 (71)
.++++|+++||++|+++++|..-.. . +...+-+ -++|++.-|.+|++++- .+|++++++++.
T Consensus 166 ~dl~~I~~la~~~g~~vvVD~t~a~---p-~~~~pl~--~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~ 230 (395)
T PRK05967 166 QDIPAIAEAAHRHGAIVMMDNTWAT---P-LYFRPLD--FGVDISIHAATKYPSGHSDILLGTVSANEKCW 230 (395)
T ss_pred HHHHHHHHHHHHhCCEEEEECCccC---c-eecChhH--cCCCEEEEecccccCCCCCeeEEEEEcCHHHH
Confidence 4789999999999999999988210 1 1122223 58999999999987763 467788776643
No 143
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=98.21 E-value=1.9e-06 Score=60.66 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHH---HhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAE---VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~---~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|++||+++++|.|+.+.-....|....+ +....|++..+++|.+|.+ ||.+++++++++
T Consensus 194 ~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~-GG~i~~~~~~~~ 264 (402)
T TIGR01821 194 APIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVV-GGYIAASRKLID 264 (402)
T ss_pred cCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccC-CceeecCHHHHH
Confidence 4689999999999999999988542211111221111 2234688888999998865 678888888764
No 144
>PLN02822 serine palmitoyltransferase
Probab=98.19 E-value=2.8e-06 Score=62.14 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh----cCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC----ASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~----~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
-++++|.++|++||+++++|-+.-+...-..|....+.. ...|+++.|++|.+|. .||+++|++++|+
T Consensus 262 ~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~-~GG~i~g~~~ii~ 333 (481)
T PLN02822 262 APLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALAT-EGGFCTGSARVVD 333 (481)
T ss_pred cCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhh-CCeEEEcCHHHHH
Confidence 358999999999999999996643221111122233321 3579999999998874 4789999998875
No 145
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=98.18 E-value=1.6e-06 Score=61.27 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=48.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH---HHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA---EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~---~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
++++|.++|+++|+++++|.|..+......|..+. .+....|+++.|++|.+|.+ ||.+++++++++
T Consensus 196 ~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~-GG~~~~~~~~~~ 265 (410)
T PRK13392 196 PIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCL-GGYIAASADLID 265 (410)
T ss_pred cHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhcc-cchhhcCHHHHH
Confidence 58999999999999999998854221111122222 22346789999999999987 578888888765
No 146
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=98.17 E-value=3e-06 Score=60.90 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHhcC-CcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce---eEEEEecc--ccc
Q psy15462 2 SIDPQLKARCQEHN-IPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV---GSILAGPE--EFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~g-i~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~---gg~l~g~~--~~i 69 (71)
-++++|+++||++| +++++|.. | ......+-+.-++|++..|++|.+++-. ||+++.+. +++
T Consensus 157 ~Dl~~i~~~a~~~g~~~~vVDnT--~----atp~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~ 224 (386)
T PF01053_consen 157 PDLEAIAKLAKEHGDILVVVDNT--F----ATPYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELY 224 (386)
T ss_dssp --HHHHHHHHHHTTT-EEEEECT--T----THTTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHH
T ss_pred ccHHHHHHHHHHhCCceEEeecc--c----cceeeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhh
Confidence 36899999999999 99999976 1 1111112233589999999999998763 78777554 544
No 147
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=98.16 E-value=3.9e-06 Score=58.83 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH----HH-hcCCcEEEEcCCCCCccceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA----EV-CASVDTVMFCLSKGLGAPVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~----~~-~~~~D~v~~s~~K~lg~p~gg~l~g~~~~ 68 (71)
.++++|.++|+++|+++|+|+|+.+.. .+.+.. .. ....+.+.+|++|.+|+ .|+.+++.++.
T Consensus 160 ~pl~eI~~l~~~~~~~livDea~~~G~---~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~-~G~~vl~~~~~ 227 (370)
T PRK05937 160 APLEQIIALSKKYHAHLIVDEAHAMGI---FGDDGKGFCHSLGYENFYAVLVTYSKALGS-MGAALLSSSEV 227 (370)
T ss_pred cCHHHHHHHHHHcCCEEEEECCccccc---cCCCCCchHHhhCCCCCcEEEEechhhhhc-CceEEEcCHHH
Confidence 478999999999999999999964421 232221 12 12334677888897765 45555555553
No 148
>PRK06225 aspartate aminotransferase; Provisional
Probab=98.10 E-value=5.1e-06 Score=58.10 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC-CHHHHhcCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL-PLAEVCASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~-~~~~~~~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|.+.. ... .+. +..++.....++..|++|++|.|. .|.+++++++++
T Consensus 177 ~~~~~i~~~a~~~~~~ii~De~y~--~~~-~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~ 245 (380)
T PRK06225 177 EEIKEFAEIARDNDAFLLHDCTYR--DFA-REHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIE 245 (380)
T ss_pred HHHHHHHHHHHHCCcEEEEehhHH--HHh-ccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHHH
Confidence 468999999999999999997621 111 122 222332234566678899998663 478888888775
No 149
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=98.10 E-value=1.7e-06 Score=61.84 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=45.9
Q ss_pred CcHHHHHHHHHhcCCcEEE--ecccchHHhhhCCCCHHHHhcCCcEEEEcCCCC-----CccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHM--DGARVFNAASYLGLPLAEVCASVDTVMFCLSKG-----LGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~--DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~-----lg~p~gg~l~g~~~~i~ 70 (71)
+++++|+++||++|+++++ |...+ .... ++.+ .++|++++|++|+ +++|..|+++.++++++
T Consensus 220 ~~l~~I~~~a~~~~~~~iv~~d~~~~----g~~~-~~~~--~~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~ 288 (447)
T PRK00451 220 EDLEEIAEIAHAGGALFIVGVDPVSL----GLLK-PPGE--YGADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVR 288 (447)
T ss_pred CCHHHHHHHHHHCCCEEEEEcChHHh----ccCC-Cccc--CCCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHh
Confidence 6799999999999999998 53310 0011 1222 5899999999996 77888888888888765
No 150
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=98.05 E-value=6.5e-06 Score=58.45 Aligned_cols=65 Identities=20% Similarity=0.227 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCC--CCc-cceeE-EEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSK--GLG-APVGS-ILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K--~lg-~p~gg-~l~g~~~~i~ 70 (71)
-++++|.++|++||++++.|+++-+... +.+.++ ....|..+||+|+ .+. ++-|| +++.++++++
T Consensus 133 ~d~~~I~~la~~~~i~vIeDaa~~~g~~-~~~~~~---g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~ 201 (376)
T TIGR02379 133 CDMDTIMALANKHQLFVIEDAAQGVMST-YKGRAL---GSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIE 201 (376)
T ss_pred cCHHHHHHHHHHCCCEEEEECccccCCc-cCCccc---CCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHH
Confidence 3688999999999999999998543211 123222 2334666666544 333 33455 5666677654
No 151
>KOG0053|consensus
Probab=98.04 E-value=6.3e-06 Score=60.01 Aligned_cols=60 Identities=20% Similarity=0.236 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC-H-HHHhcCCcEEEEcCCCCCccc---eeEEEEec-cccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP-L-AEVCASVDTVMFCLSKGLGAP---VGSILAGP-EEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-~-~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~-~~~i 69 (71)
-+|++++++||++|+.++||.. .+-+ . +-+.-|||+|+-|.+|++++= +||+++.+ +++.
T Consensus 179 ~DI~~l~~la~~~g~~vvVDnT--------f~~p~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~ 244 (409)
T KOG0053|consen 179 PDIEKLARLAHKYGFLVVVDNT--------FGSPYNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELA 244 (409)
T ss_pred ccHHHHHHHHhhCCCEEEEeCC--------cCcccccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHH
Confidence 4689999999999999999976 2222 1 223347999999999999986 58888886 5554
No 152
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=98.02 E-value=8.5e-06 Score=57.65 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHH---HhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAE---VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~---~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|.++|+++|+.+++|.++-+.-....|..+.+ +....|++..+++|.+|.+ ||.+++++++++
T Consensus 194 ~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~-GG~~~~~~~~~~ 264 (406)
T PRK13393 194 APIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVM-GGYITGSAALCD 264 (406)
T ss_pred hCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhccc-CceeeCCHHHHH
Confidence 3689999999999999999988542211112222222 2234688888999998875 678888888754
No 153
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=97.98 E-value=6.9e-06 Score=57.51 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 9 ARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 9 ~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
++++.||+.+++||++.+ .....++.++ |.+.+|+||++|.|..|+++.+++++++
T Consensus 157 ~i~~~~g~~~~VDa~qs~---g~~~idv~~~----~~~~ss~~K~lGP~G~g~l~~~~~~~~~ 212 (355)
T cd00611 157 EVPDTGGVPLVADMSSNI---LSRPIDVSKF----GVIYAGAQKNLGPAGVTVVIVRKDLLGK 212 (355)
T ss_pred eecccCCCeEEEEccccc---cCCCCCHHHh----CEEEeecccccCCCceEEEEECHHHHhh
Confidence 456679999999999644 2234445553 4455669999985556899999988753
No 154
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=97.97 E-value=8.3e-06 Score=57.39 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCC--CCCccceeE-EEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLS--KGLGAPVGS-ILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~--K~lg~p~gg-~l~g~~~~i~ 70 (71)
.++++|.++|+++|++++.|+|+-+... ..+.++ ....|.-+||+| |.++...|| +++.++++++
T Consensus 133 ~~~~~i~~la~~~~i~vIeD~a~a~g~~-~~~~~~---g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~ 200 (375)
T PRK11706 133 CEMDTIMALAKKHNLFVVEDAAQGVMST-YKGRAL---GTIGHIGCFSFHETKNYTAGEGGALLINDPALIE 200 (375)
T ss_pred cCHHHHHHHHHHcCCEEEEECccccccc-cCCeee---ecCcCEEEEeCCCCccccccCCeEEEECCHHHHH
Confidence 4678999999999999999998543211 122222 234577777776 988776555 5566666654
No 155
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=97.90 E-value=3.3e-06 Score=61.51 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=43.3
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCC-CCHHHHhcCCc-------EEEEcCCCCCccc-eeEEEEecccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVD-------TVMFCLSKGLGAP-VGSILAGPEEF 68 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~-~~~~~~~~~~D-------~v~~s~~K~lg~p-~gg~l~g~~~~ 68 (71)
++++|+++||++|++|++|-|+-. ...+. .+...+..++| +++-|.||.+++. |+++|-.+.+.
T Consensus 185 di~~I~~~~h~~~~~llvDEAhGa--h~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~ 257 (417)
T PF01276_consen 185 DIKEIAEICHKHGIPLLVDEAHGA--HFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDR 257 (417)
T ss_dssp -HHHHHHHHCCTECEEEEE-TT-T--TGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCC
T ss_pred CHHHHHHHhcccCCEEEEEccccc--cccCCCCccchhhccCccccccceeeeechhhcccccccceEEEecCCC
Confidence 689999999999999999966322 12222 11122457899 9999999988887 68888655553
No 156
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=97.90 E-value=7.1e-06 Score=57.79 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=41.7
Q ss_pred HHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 9 ARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 9 ~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
++++.+++.+++||+..+ .....++.+ .|.+.+|++|++|.|..|+++.+++++++
T Consensus 149 ~l~~~~~~l~iVDavss~---g~~~id~~~----~d~~~~ssqK~lgP~Glg~l~~s~~~~~~ 204 (349)
T TIGR01364 149 ELPDVKNAPLVADMSSNI---LSRPIDVSK----FGLIYAGAQKNIGPAGLTVVIVRKDLLGR 204 (349)
T ss_pred eecccCCCeEEEEccccc---cCccCCHHH----ccEEEEecccccCCCceEEEEECHHHHhh
Confidence 567788999999998533 222333444 57999999999986656899999988753
No 157
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=97.84 E-value=2.7e-05 Score=54.64 Aligned_cols=62 Identities=24% Similarity=0.343 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcC--CCCCccceeEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCL--SKGLGAPVGSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~--~K~lg~p~gg~l~g~~~ 67 (71)
.++.+|.++|+++||+++.|+|+-+.+.. .|.. .....|+.+||+ +|.+...-||+++.+.+
T Consensus 127 ~d~~~i~~~~~~~~i~lIeD~a~a~g~~~-~g~~---~G~~gd~~~fSf~~~K~i~~geGG~v~~~~~ 190 (363)
T PF01041_consen 127 ADMDAIRAIARKHGIPLIEDAAQAFGARY-KGRP---VGSFGDIAIFSFHPTKIITTGEGGAVVTNDP 190 (363)
T ss_dssp --HHHHHHHHHHTT-EEEEE-TTTTT-EE-TTEE---TTSSSSEEEEESSTTSSS-SSS-EEEEESTH
T ss_pred ccHHHHHHHHHHcCCcEEEccccccCcee-CCEe---ccCCCCceEecCCCCCCCcCCCCeeEEecHH
Confidence 46899999999999999999996553211 2322 224568777776 59887777887776653
No 158
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=97.80 E-value=4.3e-05 Score=55.49 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=46.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccc---eeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p---~gg~l~g~~~~i 69 (71)
-+|++|+++||++|+.++||.. | ..+.-.+-+.-++|+|.-|++|.+++= ++|+++++++.+
T Consensus 166 ~DI~~i~~~A~~~g~~vvVDNT--f----atP~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~ 230 (396)
T COG0626 166 PDIPAIARLAKAYGALVVVDNT--F----ATPVLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEEL 230 (396)
T ss_pred ccHHHHHHHHHhcCCEEEEECC--c----ccccccChhhcCCCEEEEeccccccCCcceeeeEEecChHHH
Confidence 4789999999999999999976 1 111112234458999999999999986 477777666543
No 159
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=97.78 E-value=1.5e-05 Score=56.29 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=37.9
Q ss_pred cCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 14 HNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 14 ~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
+|+.+++|++..+ .....++.+ .|.+++|++|++|.|.-|+++.+++++++
T Consensus 165 ~g~l~vVDavss~---g~~~idv~~----~d~~~~ssqK~lgP~Glg~l~~s~~~l~~ 215 (360)
T PRK05355 165 GDVPLVADMSSDI---LSRPIDVSK----FGLIYAGAQKNIGPAGLTIVIVREDLLGR 215 (360)
T ss_pred CCCcEEEEcCccc---cCccCCHHH----ccEEEEeccccccCCceEEEEECHHHHhh
Confidence 8999999998533 122333443 47999999999985556899999988753
No 160
>PRK05764 aspartate aminotransferase; Provisional
Probab=97.77 E-value=3.7e-05 Score=53.74 Aligned_cols=67 Identities=22% Similarity=0.203 Sum_probs=46.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHh---cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVC---ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~---~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+- ....+.+ .++.++. ..-+++..|++|.++.|. .|.+++++++++
T Consensus 184 ~~~~~l~~~a~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~~~~ 258 (393)
T PRK05764 184 EELEAIADVAVEHDIWVLSDEIY--EKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKELIK 258 (393)
T ss_pred HHHHHHHHHHHHCCcEEEEeccc--cceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHHHHH
Confidence 46899999999999999999552 1111112 2344441 235688889999988774 477888888765
No 161
>PRK07777 aminotransferase; Validated
Probab=97.76 E-value=3.2e-05 Score=54.19 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHh--cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVC--ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~--~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++++++++|.+-. ...+.+ .++.++. ...+++..|+||.+|.|. .|.+++++++++
T Consensus 179 ~~~~~l~~~~~~~~~~li~De~y~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~ 252 (387)
T PRK07777 179 AELAAIAELAVEHDLLVITDEVYE--HLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIA 252 (387)
T ss_pred HHHHHHHHHHHhcCcEEEEeccch--hcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHH
Confidence 468999999999999999997621 111112 2333332 235788999999998773 367888887764
No 162
>PRK12414 putative aminotransferase; Provisional
Probab=97.75 E-value=3e-05 Score=54.54 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCC--cEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASV--DTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~--D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|.+ +....+.+. ++..+.... -++.-|+||.+|.|. -|.+++++++++
T Consensus 182 ~~~~~i~~~a~~~~~~ii~De~--Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~ 255 (384)
T PRK12414 182 ADLARLAQLTRNTDIVILSDEV--YEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMD 255 (384)
T ss_pred HHHHHHHHHHHHCCeEEEEhhh--hhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHH
Confidence 4689999999999999999987 222122221 222221112 388999999988784 578888888775
No 163
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=97.74 E-value=2.8e-05 Score=53.69 Aligned_cols=66 Identities=17% Similarity=-0.000 Sum_probs=46.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh--cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC--ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~--~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+.+++|.++|+++|+++++|.+-..- ....++.++. ..-+++..|+||.+|.|. .|.+++++++++
T Consensus 145 ~~~~~l~~~a~~~~~~ii~De~y~~~---~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~ 214 (330)
T TIGR01140 145 ETLLALAARLRARGGWLVVDEAFIDF---TPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLA 214 (330)
T ss_pred HHHHHHHHHhHhcCCEEEEECccccc---CCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHH
Confidence 45889999999999999999873211 1222333332 234588999999998773 378888888764
No 164
>PRK07337 aminotransferase; Validated
Probab=97.71 E-value=3.8e-05 Score=53.84 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEE-EEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTV-MFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v-~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++++++++|-+- ....+.+.+..-....-+++ ..|+||.+|.|. .|.+++++++++
T Consensus 183 ~~~~~i~~~a~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~ 252 (388)
T PRK07337 183 DELRRIVEAVRARGGFTIVDEIY--QGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVG 252 (388)
T ss_pred HHHHHHHHHHHHCCCEEEEeccc--cccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHHHH
Confidence 46899999999999999999651 11111111111111233555 459999998775 688888887765
No 165
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=97.70 E-value=4.9e-05 Score=53.14 Aligned_cols=63 Identities=27% Similarity=0.411 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
++++|.++|++||+++++|.+.-. ....+.. ........|++++| |++++ |.| .+++++++++
T Consensus 213 ~l~~l~~l~~~~~~~li~Dev~~g--~g~~g~~~~~~~~~~~~d~~t~s--K~l~~g~~~g-~~~~~~~~~~ 279 (413)
T cd00610 213 YLKALRELCRKHGILLIADEVQTG--FGRTGKMFAFEHFGVEPDIVTLG--KGLGGGLPLG-AVLGREEIMD 279 (413)
T ss_pred HHHHHHHHHHHcCCEEEEeccccC--CCcCcchhhHhhcCCCCCeEEEc--ccccCccccE-EEEEcHHHHH
Confidence 489999999999999999976321 0011111 11112245777665 98875 345 5577888765
No 166
>PRK08361 aspartate aminotransferase; Provisional
Probab=97.68 E-value=2.4e-05 Score=54.94 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=46.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+.+++|.++|+++++++++|.+-. .....+ .++.++...-++++.|+||.+|.|. .|.+++++++++
T Consensus 186 ~~~~~l~~~~~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~ 257 (391)
T PRK08361 186 EVAKAIADIAEDYNIYILSDEPYE--HFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIK 257 (391)
T ss_pred HHHHHHHHHHHHcCeEEEEEcccc--cceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHHHH
Confidence 358899999999999999997621 001111 2233332335688899999988884 478888888765
No 167
>PRK07049 methionine gamma-lyase; Validated
Probab=97.68 E-value=6.3e-05 Score=54.38 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=43.1
Q ss_pred cHHHHHHHHHh------cCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCcc-c--eeEEEEecccccc
Q psy15462 3 IDPQLKARCQE------HNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGA-P--VGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~------~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~-p--~gg~l~g~~~~i~ 70 (71)
+++++.+++++ +++++++|.+ +.. ...-.++ ..++|++..|++|.+++ | .+|.+++++++++
T Consensus 192 d~~~l~~la~~~~~~~~~~~~vvvDet--y~~-~~~~~pl---~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~ 262 (427)
T PRK07049 192 DVAAVRRVADAIEARQGHRPIIACDNT--LLG-PVFQKPL---EHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIR 262 (427)
T ss_pred CHHHHHHHHHHhhhcccCCCEEEEECC--ccc-cccCCcc---ccCCCEEEEcCceeecCCCCcEEEEEECCHHHHH
Confidence 45667777766 8999999987 110 0011122 24789999999999985 4 6888899988765
No 168
>PRK08175 aminotransferase; Validated
Probab=97.67 E-value=4.8e-05 Score=53.58 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=45.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+- ....+.+. ++.++....| +++.|++|.+|.|. .|.+++++++++
T Consensus 184 ~~~~~i~~~a~~~~i~ii~De~y--~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~ 257 (395)
T PRK08175 184 EFFEKVVALAKRYDVLVVHDLAY--ADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVS 257 (395)
T ss_pred HHHHHHHHHHHHcCcEEEEecch--HhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHH
Confidence 46789999999999999999763 11121121 2222211123 56799999998884 578889988875
No 169
>PRK08912 hypothetical protein; Provisional
Probab=97.66 E-value=4.5e-05 Score=53.46 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=46.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHh--cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVC--ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~--~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++|++++++|-+- ....+.+ .++.++. ..-+++..|+||.+|.|. -|.+++++++++
T Consensus 179 ~~~~~i~~~~~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~ 252 (387)
T PRK08912 179 EELALLAEFCQRHDAVAICDEVW--EHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPLLR 252 (387)
T ss_pred HHHHHHHHHHHHCCeEEEEhhhh--hhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHHHH
Confidence 46889999999999999999762 1111112 2233331 234689999999888774 578888888765
No 170
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=97.66 E-value=7.5e-05 Score=54.89 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
+.++++.++|++||+.+++| |.|.- .+.....+--..|+++| .|.+|+ |+|++ ++++++++
T Consensus 267 ~fl~~lr~lc~~~g~lLI~DEV~tGfR~g-----~~ga~~~~gv~PDi~t~--gK~lggG~Pigav-~g~~ei~~ 333 (474)
T PLN02482 267 EFLEGLREITKENGALLVFDEVMTGFRIA-----YGGAQEYFGITPDLTTL--GKVIGGGLPVGAY-GGRREIME 333 (474)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCeecC-----cchHhHHhCCCCCEEEe--cchhhCCCceEEE-EEcHHHHH
Confidence 46889999999999999999 44432 11111222235688776 676654 88877 78888764
No 171
>PLN02955 8-amino-7-oxononanoate synthase
Probab=97.66 E-value=8e-05 Score=55.17 Aligned_cols=68 Identities=24% Similarity=0.172 Sum_probs=49.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
-++++|.++|++||..+++|=|+-+...-..|....+. ....|+++-+++|.+|.. ||++++++++++
T Consensus 266 apL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~-GGfi~gs~~~~~ 336 (476)
T PLN02955 266 APMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCH-GGFIACSKKWKQ 336 (476)
T ss_pred CCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhcc-CceeecHHHHHH
Confidence 46899999999999999999554322111223344433 246789999999988765 889999987664
No 172
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=97.65 E-value=0.00012 Score=50.36 Aligned_cols=66 Identities=26% Similarity=0.248 Sum_probs=44.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC-----HHHHhcCCc-EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP-----LAEVCASVD-TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-----~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|-+-.. ...+.+ ...+....+ ++..|++|.+|.|. -|.+++++++++
T Consensus 168 ~~l~~l~~~~~~~~~~ii~De~y~~---~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~ 241 (363)
T PF00155_consen 168 EELRELAELAREYNIIIIVDEAYSD---LIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIE 241 (363)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTTT---GBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHH
T ss_pred ccccchhhhhcccccceeeeeceec---cccCCCccCcccccccccccceeeeeccccccccccccccccchhhhhh
Confidence 4678899999999999999966211 112322 222334444 89999999998884 366666877764
No 173
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=97.65 E-value=8.4e-05 Score=53.79 Aligned_cols=69 Identities=26% Similarity=0.325 Sum_probs=51.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh----cCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC----ASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~----~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+.+|++|.+++++|+.+++||=|+-..-.-..|.-+.|.. ...|++.-+++|.+| -.||.++|++++++
T Consensus 187 iApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlG-s~Gg~v~g~~~~~d 259 (388)
T COG0156 187 IAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALG-SSGGYIAGSAALID 259 (388)
T ss_pred cCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhc-ccCceeeCcHHHHH
Confidence 3589999999999999999994433321122344455442 345899999999998 55999999998875
No 174
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=97.64 E-value=4.8e-05 Score=53.18 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhc--CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCA--SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~--~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+-. ...+.+ .++.++.. .-.++.-|+||.+|.|. .|.+++++++++
T Consensus 186 ~~~~~l~~~~~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~l~~ 259 (385)
T PRK09276 186 EFFEEVVDFAKKYDIIVCHDAAYS--EIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNADLIA 259 (385)
T ss_pred HHHHHHHHHHHHCCcEEEEecchh--heecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHHHHH
Confidence 468999999999999999997721 111112 12333321 22466789999988884 468889988775
No 175
>PRK07550 hypothetical protein; Provisional
Probab=97.64 E-value=5.7e-05 Score=52.90 Aligned_cols=67 Identities=13% Similarity=0.077 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhc----CC-cEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCA----SV-DTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~----~~-D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|.+-. .....+.....+.. .. .++..|++|.+|.|. .|.+++++++++
T Consensus 183 ~~~~~i~~~~~~~~~~iI~Dd~y~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~ 256 (386)
T PRK07550 183 ELLHELYDLARRHGIALILDETYR--DFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIA 256 (386)
T ss_pred HHHHHHHHHHHHcCeEEEEeccch--hhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHHHH
Confidence 358999999999999999998621 11111111111111 11 256789999988674 678888888764
No 176
>PRK06108 aspartate aminotransferase; Provisional
Probab=97.63 E-value=5.8e-05 Score=52.39 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=44.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhC-C---CCHHHHhc--CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYL-G---LPLAEVCA--SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~-~---~~~~~~~~--~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|.+-.. ..+. + .++.++.. .-.++..|+||.+|.|. -|.+++++++++
T Consensus 178 ~~~~~l~~~~~~~~~~li~De~y~~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~ 252 (382)
T PRK06108 178 DDLRAILAHCRRHGLWIVADEVYER--LYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQ 252 (382)
T ss_pred HHHHHHHHHHHHCCcEEEEehhhhh--hccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHH
Confidence 4689999999999999999976211 1111 1 12223322 23477889999887663 478888888775
No 177
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=97.62 E-value=9.5e-05 Score=52.11 Aligned_cols=67 Identities=21% Similarity=0.194 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++|++++++|.+-. ...+.+ .++.++...--++.-|+||.+|.|. -|.+++++++++
T Consensus 186 ~~~~~l~~~~~~~~~~ii~D~~y~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~ 257 (391)
T PRK07309 186 EQIKALADVLKKYDIFVISDEVYS--ELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAEFTA 257 (391)
T ss_pred HHHHHHHHHHHHcCcEEEEEcccc--ceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHHHHH
Confidence 468999999999999999998721 111112 2333332212377889999988784 478889988875
No 178
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=97.62 E-value=6.6e-05 Score=52.48 Aligned_cols=67 Identities=24% Similarity=0.210 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhc--CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCA--SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~--~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+-. ...+.+ .++..+.. .-.++.-|++|.+|.|. -|.+++++++++
T Consensus 184 ~~~~~i~~~a~~~~~~ii~De~y~--~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~l~~ 257 (383)
T TIGR03540 184 KFFKELVEFAKEYNIIVCHDNAYS--EITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNADLIA 257 (383)
T ss_pred HHHHHHHHHHHHcCEEEEEecchh--hhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHHHHH
Confidence 468999999999999999998732 111112 22223211 22366789999998784 578889988875
No 179
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=97.62 E-value=8.6e-05 Score=51.67 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhc-----CC--cEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCA-----SV--DTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~-----~~--D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|.+.. ...+.+.++..+.. .. -++..|++|.+|.|. .|.+++++++++
T Consensus 162 ~~~~~i~~~a~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~~~~ 237 (357)
T TIGR03539 162 DELRAIVAWARERGAVVASDECYL--ELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPALVA 237 (357)
T ss_pred HHHHHHHHHHHHcCeEEEEecchh--hhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHHHHH
Confidence 468899999999999999998732 11111212111110 11 277779999877774 678889888765
No 180
>PRK09082 methionine aminotransferase; Validated
Probab=97.61 E-value=2.6e-05 Score=54.77 Aligned_cols=67 Identities=10% Similarity=-0.057 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhC---CCCHHHHh--cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYL---GLPLAEVC--ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~---~~~~~~~~--~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+- ....+. ..++.++. ..-.++.-|++|.+|.|. .|.+++++++++
T Consensus 183 ~~~~~i~~~a~~~~i~li~De~y--~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~ 256 (386)
T PRK09082 183 ADMRALWQLIAGTDIYVLSDEVY--EHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSA 256 (386)
T ss_pred HHHHHHHHHHHHCCEEEEEehhh--hhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHH
Confidence 57899999999999999999762 111211 12333332 123477789999998884 478888888875
No 181
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=9.2e-05 Score=53.42 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~ 66 (71)
-++++|.++|++||++++.|+|+-+.+.+ .|..+-.+ ..+-++||.++|.+..--||+++.+.
T Consensus 136 ~dm~~i~~la~~~~l~vIEDaAqa~Ga~y-~gk~vGt~-Gd~~~fSF~~~K~ittgEGGav~tnd 198 (374)
T COG0399 136 CDMDAIMALAKRHGLPVIEDAAQAHGATY-KGKKVGSF-GDIGAFSFHATKNLTTGEGGAVVTND 198 (374)
T ss_pred CCHHHHHHHHHHcCCeEEEEcchhccCee-cCcccccc-cceEEEEecCCCCccccCceEEEeCC
Confidence 36899999999999999999995332211 23222221 23457888889988877677665544
No 182
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=97.59 E-value=8.8e-05 Score=51.44 Aligned_cols=66 Identities=29% Similarity=0.314 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC---HHHHhcCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP---LAEVCASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~---~~~~~~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|-+-. ... ++.+ +..+...-.++..|+||.+|.|. .|.+++++++++
T Consensus 156 ~~~~~l~~~a~~~~~~ii~De~y~--~~~-~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~ 226 (350)
T TIGR03537 156 SYLKETIAMCREHGIILCSDECYT--EIY-FGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLIS 226 (350)
T ss_pred HHHHHHHHHHHHcCcEEEEecccc--ccc-cCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHHHHH
Confidence 458999999999999999997721 111 1222 22221111255559999988884 578888887764
No 183
>PRK07568 aspartate aminotransferase; Provisional
Probab=97.59 E-value=8.4e-05 Score=52.01 Aligned_cols=67 Identities=19% Similarity=0.119 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCc--EEEEcCCCCCccce--eEEEE-ecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVD--TVMFCLSKGLGAPV--GSILA-GPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~-g~~~~i~ 70 (71)
+++++|.++|+++|+++++|.+- ....+.+. ++.++....+ ++.-|+||.+|.|. .|.++ .++++++
T Consensus 182 ~~~~~i~~~~~~~~~~ii~De~y--~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~~~~ 256 (397)
T PRK07568 182 EELEMLAEIAKKHDLFLISDEVY--REFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNKELIA 256 (397)
T ss_pred HHHHHHHHHHHHCCcEEEEeccc--hhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCHHHHH
Confidence 36899999999999999999762 11111222 2233322123 66779999887663 44444 4566654
No 184
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=97.58 E-value=0.0002 Score=50.42 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=41.6
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-hcCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-CASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-~~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++|+++|++||+++++|.+.- .....|.... +. -...|.+++| |++++-. .|.+++++++++
T Consensus 209 ~l~~l~~l~~~~gi~lI~DEv~~--g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~~~ 276 (401)
T PRK00854 209 YFTRVRELCTANNVTLILDEIQT--GLGRTGKLLAEEHEGIEADVTLIG--KALSGGFYPVSAVLSNSEVLG 276 (401)
T ss_pred HHHHHHHHHHHcCCEEEEechhh--CCCCCchHhHHhhcCCCCCEEEec--ccccCCccCeEEEEEcHHHHh
Confidence 49999999999999999997742 1111121111 11 1346888885 8776442 557788887764
No 185
>PRK05942 aspartate aminotransferase; Provisional
Probab=97.56 E-value=0.0001 Score=51.96 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHh--cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVC--ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~--~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|.+-. ...+.+ .++.++. ....++..|++|.+|.|. .|.+++++++++
T Consensus 190 ~~~~~i~~~a~~~~~~iI~De~y~--~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l~~ 263 (394)
T PRK05942 190 EFFEEIVAFARKYEIMLVHDLCYA--ELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHIIQ 263 (394)
T ss_pred HHHHHHHHHHHHcCeEEEEeccch--hhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHHHH
Confidence 458999999999999999997721 111111 2333332 123466788999888774 578888888875
No 186
>PRK08960 hypothetical protein; Provisional
Probab=97.55 E-value=0.00012 Score=51.31 Aligned_cols=65 Identities=18% Similarity=0.099 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHhcCCc-EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVCASVD-TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|+++|++||+++++|.+-. ...+.+ .++.++ .-+ ++..|+||.+|.|. .|.+++++++++
T Consensus 185 ~~~~~l~~~~~~~~~~li~De~Y~--~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~ 254 (387)
T PRK08960 185 DELAALSQALRARGGHLVVDEIYH--GLTYGVDAASVLEV--DDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVP 254 (387)
T ss_pred HHHHHHHHHHHHcCCEEEEEcccc--ccccCCCCCChhhc--cCCEEEEeecccccCCcccEEEEEEcCHHHHH
Confidence 468899999999999999997621 111111 122222 123 67789999988885 788999988875
No 187
>PRK15029 arginine decarboxylase; Provisional
Probab=97.55 E-value=8.1e-05 Score=57.70 Aligned_cols=62 Identities=13% Similarity=-0.032 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHH---H-----h-cCCc-EEEEcCCCCCccc-eeEEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAE---V-----C-ASVD-TVMFCLSKGLGAP-VGSILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~---~-----~-~~~D-~v~~s~~K~lg~p-~gg~l~g~ 65 (71)
.++++|+++||++|+++++|-|+-.. ......+++ + . .++| +++=|.||.+++. |+++|-.+
T Consensus 328 ~di~~I~~~~h~~~~~llvDEAhGah--~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~ 400 (755)
T PRK15029 328 YNAKEAQDLLEKTSDRLHFDEAWYGY--ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVR 400 (755)
T ss_pred eCHHHHHHHHHhcCCeEEEECccccc--cccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeC
Confidence 46899999999999999999553221 111111211 2 2 5788 9999999998887 57777543
No 188
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=97.54 E-value=8.2e-05 Score=52.57 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=41.0
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-hcCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-CASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-~~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++|.++|++||+++++|-+..- ....|.... +. ....|+++| +|.+|++. .|.+++++++++
T Consensus 208 ~l~~l~~l~~~~g~lli~DEv~~g--~g~~g~~~~~~~~~~~pdi~~~--sK~lg~gg~~ig~~~~~~~i~~ 275 (396)
T PRK04073 208 FLKAARELCKEENVLFIADEIQTG--LGRTGKLFACDWDNVTPDMYIL--GKALGGGVFPISCVAANRDILG 275 (396)
T ss_pred HHHHHHHHHHHcCCEEEEecchhC--CCcCcHHHHhhhcCCCCCEEEe--cccccCCCCcceEEEEcHHHHh
Confidence 489999999999999999976321 011111111 22 234688876 58877652 456678887765
No 189
>PRK05957 aspartate aminotransferase; Provisional
Probab=97.52 E-value=0.00011 Score=51.74 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhc-C-CcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCA-S-VDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~-~-~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|.+-. ...+.+. ++..+.. . --++..|++|.+|.|. -|.++.++++++
T Consensus 180 ~~~~~i~~~a~~~~~~li~De~y~--~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~ 253 (389)
T PRK05957 180 ALLRAVNQICAEHGIYHISDEAYE--YFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLE 253 (389)
T ss_pred HHHHHHHHHHHHcCcEEEEeccch--hccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHH
Confidence 358999999999999999997621 1111111 2222211 1 2266788999988784 577778888775
No 190
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=97.51 E-value=0.00014 Score=50.65 Aligned_cols=67 Identities=15% Similarity=0.115 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhc-------CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCA-------SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~-------~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|-+-. ...+.+.++..+.. .--++..|++|.++.|. .|.+++++++++
T Consensus 168 ~~~~~i~~~a~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~~~ 243 (364)
T PRK07865 168 DHLRKVVAWARERGAVVASDECYL--ELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPALVA 243 (364)
T ss_pred HHHHHHHHHHHHcCCEEEEecchh--hhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHHHH
Confidence 468899999999999999997721 11111212211110 11388899999988774 678899988765
No 191
>PRK07324 transaminase; Validated
Probab=97.50 E-value=0.00013 Score=51.23 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=43.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|+++|++||+++++|.+- .... ++. ++.+... -.++.-|+||.+|.|. -|.+++++++++
T Consensus 173 ~~l~~i~~~a~~~~~~ii~De~y--~~l~-~~~~~~s~~~~~~-~~I~~~s~SK~~~~~G~RiG~i~~~~~li~ 242 (373)
T PRK07324 173 AYLEEIVEIARSVDAYVLSDEVY--RPLD-EDGSTPSIADLYE-KGISTNSMSKTYSLPGIRVGWIAANEEVID 242 (373)
T ss_pred HHHHHHHHHHHHCCCEEEEEccc--cccc-cCCCCCChhhccC-CEEEEecchhhcCCccceeEEEecCHHHHH
Confidence 35899999999999999999761 1111 121 2222211 1256679999988773 477778888775
No 192
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=97.49 E-value=0.00013 Score=51.24 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-hcCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-CASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-~~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
.+++|.++|++||+++++|....- ....|..+. +. ....|++++| |++++.. -|.+++++++++
T Consensus 200 ~l~~l~~l~~~~~~lli~Dev~~g--~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~~~ig~v~~~~~~~~ 267 (400)
T PTZ00125 200 YLKQVYELCKKYNVLLIVDEIQTG--LGRTGKLLAHDHEGVKPDIVLLG--KALSGGLYPISAVLANDDVML 267 (400)
T ss_pred HHHHHHHHHHHcCCEEEEeccccC--CCccchhhHHHhcCCCCCEEEEc--ccccCCCcCcEEEEEcHHHHh
Confidence 389999999999999999976310 011121111 11 1235888875 8877532 346777777664
No 193
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=97.49 E-value=0.00011 Score=53.28 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCC--CCCccceeEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLS--KGLGAPVGSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~--K~lg~p~gg~l~g~~~ 67 (71)
.++++|.++|+++|++++.|+++-+.+.. .|..+. ...|..+||++ |.+..--||+|+.+.+
T Consensus 173 ~dl~~I~~la~~~gi~vIeDaa~a~G~~~-~g~~~G---~~gd~~~fSf~~~k~~~~geGG~l~t~d~ 236 (438)
T PRK15407 173 FDLAAVKAFCDKHNLWLIEDNCDALGSTY-DGRMTG---TFGDIATLSFYPAHHITMGEGGAVFTNDP 236 (438)
T ss_pred hhHHHHHHHHHHCCCEEEEECccchhhhc-CCeeee---ccCceEEEeCCCCCCccccCceEEEECCH
Confidence 36889999999999999999986443222 233222 23376666654 5444333666655543
No 194
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=97.49 E-value=0.00015 Score=51.05 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=38.5
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
++++|.++|++||+++++|-+.-- ....|... .......|+++| +|++++ |+|+++. ++++++
T Consensus 205 ~l~~l~~l~~~~~~llI~DEv~~g--~gr~g~~~~~~~~~~~pDi~t~--sK~l~~G~~ig~~~~-~~~~~~ 271 (398)
T PRK03244 205 YLAAAREITDRHGALLVLDEVQTG--IGRTGAWFAHQHDGVTPDVVTL--AKGLGGGLPIGACLA-FGPAAD 271 (398)
T ss_pred HHHHHHHHHHHcCCEEEEeccccC--CcccchHHhhhhhCCCCCEEEE--chhhhCCcccEEEEE-cHHHHh
Confidence 389999999999999999976411 01112111 111123577766 598874 6676665 444543
No 195
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=97.49 E-value=0.00018 Score=51.09 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=44.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCcEEEEcCCCCCccce-eEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i 69 (71)
.+.+.++++||++|+|+++.+| +..| ++.+| -++|++.-|+||.+.+-. .|+|.-+++|-
T Consensus 173 ~Dakkva~ic~e~gvPlllN~A------Yt~Grmpvs~ke--~g~DFiVgSGHKsmAAs~PiGvl~~~eE~a 236 (382)
T COG1103 173 ADAKKVAKICREYGVPLLLNCA------YTVGRMPVSGKE--IGADFIVGSGHKSMAASAPIGVLAMSEEWA 236 (382)
T ss_pred hhhHHHHHHHHHcCCceEeecc------eeeccccccccc--cCCCEEEecCccchhccCCeeEEeehhHHH
Confidence 3567899999999999999998 3223 23345 589999999999765432 45888777764
No 196
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=97.44 E-value=0.00055 Score=48.00 Aligned_cols=60 Identities=32% Similarity=0.469 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCccceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+++++| |. | .|.. ...+--..|+++++-.=..|.|+++++ +++++.
T Consensus 198 ~~l~~l~~lc~~~gillI~DEV~tG~gR-------tG~~~a~~~~gv~PDiv~~gK~l~gG~p~sav~-~~~~i~ 264 (339)
T PF00202_consen 198 EYLRELRELCREHGILLIADEVQTGFGR-------TGKFFASEHYGVDPDIVTFGKGLGGGLPISAVL-GSEEIM 264 (339)
T ss_dssp THHHHHHHHHHHTT-EEEEEETTTTTTT-------TSSSSGHHHHTSSSSEEEEEGGGGTTSSEEEEE-EEHHHH
T ss_pred chhhehcccccccccceecccccccccc-------cCCccceecccccCcccccccchhhhhhccccc-ccchhh
Confidence 57899999999999999999 44 2 2322 233334569999985555566767555 444443
No 197
>PRK09148 aminotransferase; Validated
Probab=97.43 E-value=0.00018 Score=51.04 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|.+-. ...+.+. ++.++....| ++.-|+||.+|.|. .|.+++++++++
T Consensus 185 ~~l~~l~~~a~~~~~~ii~De~Y~--~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~~~i~ 258 (405)
T PRK09148 185 DFYKDVVAFAKKHDIIILSDLAYS--EIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNERLIA 258 (405)
T ss_pred HHHHHHHHHHHHcCeEEEEeccch--hhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCHHHHH
Confidence 467899999999999999997721 1111111 2333211122 45789999998884 578889988875
No 198
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=97.41 E-value=0.00018 Score=50.04 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH-HHHh-cCCcEEEEcCCCCCccce--eEEEEe-cccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL-AEVC-ASVDTVMFCLSKGLGAPV--GSILAG-PEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~-~~~~-~~~D~v~~s~~K~lg~p~--gg~l~g-~~~~i~ 70 (71)
+++++|.++|+++++++++|.+- ......+.+. ..+. ..-.++..|+||++|.|. -|.+++ ++++++
T Consensus 162 ~~~~~i~~~a~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~ 233 (356)
T PRK08056 162 QLLQAIAERCKSLNIALILDEAF--IDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVA 233 (356)
T ss_pred HHHHHHHHHHHhcCCEEEEecch--hccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHH
Confidence 35889999999999999999871 1111111111 1111 124588899999999884 455554 555543
No 199
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=97.39 E-value=0.00024 Score=49.57 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=40.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+.- .....|... ..+....|+++ ++|.+++ | .|.+++++++++
T Consensus 188 ~~l~~l~~l~~~~~~~lI~DEv~~--g~g~~g~~~~~~~~~~~~di~t--~sK~l~~G~~-ig~v~~~~~~~~ 255 (377)
T PRK02936 188 AFLQEVQTLCKKFGALLIIDEVQT--GIGRTGTLFAYEQFGLDPDIVT--VAKGLGNGIP-VGAMIGKKELGT 255 (377)
T ss_pred HHHHHHHHHHHHcCCEEEEecccc--CCCcCchhhHHHhhCCCCcEEE--EcccccCCCc-cEEEEEcHHHHh
Confidence 468999999999999999997631 111122222 12222347664 6887773 3 457778888765
No 200
>PLN00175 aminotransferase family protein; Provisional
Probab=97.39 E-value=0.00022 Score=50.99 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHhc--CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVCA--SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~~--~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++|++++++|.+- ....+.+ .++.++.. .--++..|++|.++.|. -|.+++++++++
T Consensus 207 ~~l~~l~~~a~~~~~~ii~De~Y--~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l~~ 279 (413)
T PLN00175 207 EELELIASLCKENDVLAFTDEVY--DKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHLTW 279 (413)
T ss_pred HHHHHHHHHHHHcCcEEEEeccc--CccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHHHH
Confidence 46899999999999999999772 2112111 23334322 22367789999988784 478888888765
No 201
>PRK07683 aminotransferase A; Validated
Probab=97.36 E-value=0.00029 Score=49.61 Aligned_cols=67 Identities=18% Similarity=0.057 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHh--cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVC--ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~--~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|.+-.- ..+.+ .++.++. ..-.++.-|++|.+|.|. -|.+++++++++
T Consensus 181 ~~~~~l~~~~~~~~~~ii~De~y~~--~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l~~ 253 (387)
T PRK07683 181 EELQDIADVLKDKNIFVLSDEIYSE--LVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYLAK 253 (387)
T ss_pred HHHHHHHHHHHHcCeEEEEeccccc--ceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHHHH
Confidence 4689999999999999999976211 11111 1233331 112477889999999884 478888888775
No 202
>PRK06207 aspartate aminotransferase; Provisional
Probab=97.33 E-value=0.00023 Score=50.57 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=44.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC---HHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP---LAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~---~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+ +....+.+.+ +..+....| ++.-|+||.++.|. .|.+++++++++
T Consensus 198 e~l~~l~~~a~~~~~~iI~De~--Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~ 271 (405)
T PRK06207 198 EEIAQIAALARRYGATVIVDQL--YSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAIID 271 (405)
T ss_pred HHHHHHHHHHHHcCCEEEEecc--ccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHHHH
Confidence 4689999999999999999976 1111111222 222211112 77889999988774 678888888765
No 203
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=97.33 E-value=0.00028 Score=52.27 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCHHHHhcCCcEEEEcCCCCCcc---ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPLAEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~i~ 70 (71)
+.++++.++|++||+.+++| |. |.-. ......+--..|+++| .|.+|+ |+|+ +++++++++
T Consensus 281 ~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~-----~~a~e~~gv~PDivtl--gK~lggG~~PigA-v~~~~~i~d 349 (504)
T PLN02760 281 TYFEKIQAVLKKYDILFIADEVICAFGRLGT-----MFGCDKYNIKPDLVSL--AKALSSAYMPIGA-VLVSPEISD 349 (504)
T ss_pred HHHHHHHHHHHHcCCEEEecchhhCCcccch-----hhHHHhcCCCCcEEEe--cccccCCccccce-EeecHHHHh
Confidence 35899999999999999999 43 2211 0111122223788776 577764 8887 555666543
No 204
>PRK07682 hypothetical protein; Validated
Probab=97.33 E-value=0.00014 Score=50.81 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=45.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHhc--CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVCA--SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~~--~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++|++++++|-+-. ...+.+ .++.++.. .-.++.-|++|.++.|. -|.+++++++++
T Consensus 174 ~~~~~l~~~~~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~i~ 246 (378)
T PRK07682 174 SELEEIAVIVEKHDLIVLSDEIYA--ELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYFSE 246 (378)
T ss_pred HHHHHHHHHHHHcCcEEEEehhhh--hcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHHHH
Confidence 468999999999999999997621 111111 12333321 23578889999988774 478888888875
No 205
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=97.33 E-value=0.00024 Score=49.81 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=45.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC----CHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL----PLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~----~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+ +....+.+. ++.++....+ ++.-|+||.+|.|. .|.+++++++++
T Consensus 185 ~~~~~l~~~a~~~~~~ii~De~--Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~li~ 259 (388)
T PRK07366 185 SFFQEAVAFCQQHDLVLVHDFP--YVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGNAQLIQ 259 (388)
T ss_pred HHHHHHHHHHHHcCeEEEEecc--hhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCCHHHHH
Confidence 4688999999999999999965 211121221 2333322223 56679999998884 678888988875
No 206
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=97.32 E-value=0.0003 Score=50.30 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCcc--ceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLGA--PVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~ 68 (71)
+.++++.++|++||+.+++|-..-- .-..|.-. ..+.-..|++++| |.+|+ |+|++ ++++++
T Consensus 200 ~~l~~l~~l~~~~~~llI~DEv~tG--~GRtG~~~a~~~~gv~PDi~t~g--K~lg~G~p~~av-~~~~~i 265 (395)
T PRK03715 200 EFMQQLRALTKQHGLLLIVDEVQTG--CGRTGTLFAYELSGIEPDIMTLG--KGIGGGVPLAAL-LAKAEV 265 (395)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccC--CCCCcchhhHhhcCCCCceeeeh--hhhhCCcceEEE-EEcccc
Confidence 3589999999999999999954210 00122211 1222346888775 87776 87766 556554
No 207
>PRK07681 aspartate aminotransferase; Provisional
Probab=97.31 E-value=0.00041 Score=48.96 Aligned_cols=67 Identities=22% Similarity=0.165 Sum_probs=44.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCC--cEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASV--DTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~--D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|-+- ....+.+. ++.++.... .++.-|+||.+|.|. .|.+++++++++
T Consensus 186 ~~~~~i~~~a~~~~~~iI~De~y--~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~~l~~ 259 (399)
T PRK07681 186 DFFKEVIAFAKKHNIIVVHDFAY--AEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNEEIVR 259 (399)
T ss_pred HHHHHHHHHHHHcCeEEEEeccc--hhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCHHHHH
Confidence 46899999999999999999762 11111122 222332222 355569999988784 577788888875
No 208
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00024 Score=52.62 Aligned_cols=62 Identities=24% Similarity=0.281 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC-HHHHhcCCcEEEEcCCCCC------ccceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP-LAEVCASVDTVMFCLSKGL------GAPVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-~~~~~~~~D~v~~s~~K~l------g~p~gg~l~g~~~~ 68 (71)
+.++||+++.|++|-.|++|||- +|+ ..|.. +-+ .++|++-+.+||.+ |+|..|=+.-++++
T Consensus 221 ~~I~ei~~ivH~~Gg~vY~DGAN-lNA--~vG~~rPGd--~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L 289 (496)
T COG1003 221 EDIREICEIVHEAGGQVYYDGAN-LNA--IVGLARPGD--MGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHL 289 (496)
T ss_pred hhHHHHHHHHHHcCCEEEecCcc-hhh--hhccccccc--cccceEEeecccccccCCCCCCCCCCceehHhhc
Confidence 47899999999999999999994 332 23322 345 48999999999965 44544444444444
No 209
>PRK08068 transaminase; Reviewed
Probab=97.29 E-value=0.00032 Score=49.28 Aligned_cols=67 Identities=24% Similarity=0.242 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhc--CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCA--SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~--~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++++++++|-+- ....+.+. +...... .-.++..|+||.+|.|. -|.+++++++++
T Consensus 187 ~~~~~l~~la~~~~~~ii~Deay--~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~ 260 (389)
T PRK08068 187 AFFEETVAFAKKHNIGVVHDFAY--GAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNESVIE 260 (389)
T ss_pred HHHHHHHHHHHHcCeEEEEehhh--hhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCHHHHH
Confidence 46889999999999999999662 11111121 1112111 12377789999998884 477788888875
No 210
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=97.29 E-value=0.00038 Score=48.27 Aligned_cols=65 Identities=18% Similarity=0.271 Sum_probs=40.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEEcCCCCCccce-eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~s~~K~lg~p~-gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|.+.. .....+. ++.......|+++| +|.+++.. .|.+++++++++
T Consensus 191 ~~l~~i~~l~~~~~~~~i~De~~~--~~~~~g~~~~~~~~~~~~d~~t~--sK~~~~G~riG~~~~~~~~~~ 258 (379)
T TIGR00707 191 EFLKALREICKDKDALLIFDEVQT--GIGRTGKFFAYEHYGIEPDIITL--AKGLGGGVPIGATLAKEEVAE 258 (379)
T ss_pred HHHHHHHHHHHHcCCEEEEecccc--CCCccchhhhHHhcCCCCCEEEE--cccccCCcccEEEEEcHHHHh
Confidence 357999999999999999998742 1111221 11122223466654 79888421 456777887765
No 211
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=97.29 E-value=0.00042 Score=49.93 Aligned_cols=60 Identities=18% Similarity=0.271 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhcCCcEEEe----cccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMD----GARVFNAASYLGLPLAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~D----gAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+++++.++|++||+.+++| |.|... +.....+--..|++++ .|.++ .|+|++ ++++++++
T Consensus 222 yl~~l~~lc~~~g~llI~DEV~tG~Rt~~-----~~a~~~~gv~PDivt~--gK~lggG~Pi~av-~~~~~i~~ 287 (428)
T PRK12389 222 FLEAVNELAHEAGALVIYDEVITAFRFMY-----GGAQDLLGVEPDLTAL--GKIIGGGLPIGAY-GGRKDIME 287 (428)
T ss_pred HHHHHHHHHHHcCCEEEEEccccccccCc-----chhhHHhCCCCCeeee--chhhcCCCceeEE-eEHHHHHh
Confidence 5899999999999999999 555421 1111222235688766 56554 488877 67777654
No 212
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=97.27 E-value=0.00028 Score=50.54 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-hcCCcEEEEcCCCCCcc---ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-CASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+.+++|-... .....|.... +. .-..|++++| |++++ |.|+ +++++++++
T Consensus 221 ~~l~~l~~lc~~~g~llI~DEv~t--g~gr~G~~~a~~~~~v~pDi~~~~--K~l~gG~~p~~a-v~~~~~i~~ 289 (423)
T PRK05964 221 RYLAELRRICDRHGVLLIFDEIAT--GFGRTGTLFACEQAGVSPDIMCLS--KGLTGGYLPLAA-TLCTAEIFE 289 (423)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--CCCcCcchhHHHhcCCCCCeeeee--hhhhcCcccceE-EEEcHHHHH
Confidence 468999999999999999996531 0111232211 22 2346887765 88754 5554 777777654
No 213
>PRK08363 alanine aminotransferase; Validated
Probab=97.26 E-value=0.00054 Score=48.28 Aligned_cols=66 Identities=24% Similarity=0.195 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHhcCCc-EEEEcCCCCCccce--eEEEEe--ccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVCASVD-TVMFCLSKGLGAPV--GSILAG--PEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~g--~~~~i 69 (71)
+++++|.++|+++|+++++|.+- ....+.+ .++..+..... ++.-|+||.++.|. -|.++. +++++
T Consensus 186 ~~~~~l~~~a~~~~~~li~Deay--~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~ 258 (398)
T PRK08363 186 KTLKEILDIAGEHDLPVISDEIY--DLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPEGKL 258 (398)
T ss_pred HHHHHHHHHHHHcCeEEEEhhhh--hhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeCcHHHH
Confidence 45899999999999999999872 2112112 12333322222 44569999877774 355554 65544
No 214
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00036 Score=50.12 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCc-EEEE-cCCCCCccce--eEEEEec-ccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVD-TVMF-CLSKGLGAPV--GSILAGP-EEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D-~v~~-s~~K~lg~p~--gg~l~g~-~~~i~ 70 (71)
+++++|.++|++|+++++.|=. +....+-+ .++.++....| .+++ |+||.++++. -|.++++ +++++
T Consensus 183 ~~l~~i~~~a~~~~i~ii~DEi--Y~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l~~ 257 (393)
T COG0436 183 EELKAIVELAREHDIIIISDEI--YEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEELIA 257 (393)
T ss_pred HHHHHHHHHHHHcCeEEEEehh--hhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHHHH
Confidence 5789999999999999999954 33334334 22334332223 4554 9999999884 6788877 76664
No 215
>PRK08636 aspartate aminotransferase; Provisional
Probab=97.24 E-value=0.00047 Score=48.78 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=44.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++|+++++.|=+- ....+.+ .++..+....| +++.|+||.+|.|. .|.+++++++++
T Consensus 195 ~~~~~l~~~a~~~~~~II~De~Y--~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~~~~li~ 268 (403)
T PRK08636 195 SFYERLVALAKKERFYIISDIAY--ADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVGNKKLVG 268 (403)
T ss_pred HHHHHHHHHHHHcCcEEEEeccc--hhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeCCHHHHH
Confidence 56899999999999999999441 1111112 22334322223 34679999998784 678889988875
No 216
>PLN02624 ornithine-delta-aminotransferase
Probab=97.23 E-value=0.00043 Score=50.65 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=39.7
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-H-HhcCCcEEEEcCCCCCcc---ceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-E-VCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~-~~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~i~ 70 (71)
.+++|.++|++||+.+++|-+.- .....|.... + .....|++++| |.+|+ |+| .+++++++++
T Consensus 246 ~L~~l~~lc~~~gillI~DEv~t--G~GrtG~~~a~~~~~i~pDiv~ls--K~lggG~~pig-av~~~~~i~~ 313 (474)
T PLN02624 246 YLKAVRELCSKHNVLMIADEIQT--GLARTGKMLACDWEEVRPDVVILG--KALGGGVIPVS-AVLADKDVML 313 (474)
T ss_pred HHHHHHHHHHHcCCEEEEecccc--CcCcCcchhhHHhcCCCCCEEEec--ccccCCCCcce-eeeecHHHHh
Confidence 49999999999999999997742 1111222222 1 12346888885 77665 444 4556666653
No 217
>PRK07505 hypothetical protein; Provisional
Probab=97.22 E-value=0.00081 Score=47.56 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=41.9
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhc-CCc--EEEEcCCCCCccceeEEE-Eecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCA-SVD--TVMFCLSKGLGAPVGSIL-AGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~-~~D--~v~~s~~K~lg~p~gg~l-~g~~~~i~ 70 (71)
++++|.++|+++|+.+++|-+.-+......|.. ...+.. .-| +++.|++|.++.+ ||.+ ++++++++
T Consensus 197 ~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg~~~~~~~~~~~ 269 (402)
T PRK07505 197 PVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GGVIMLGDAEQIE 269 (402)
T ss_pred CHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-CeEEEeCCHHHHH
Confidence 578999999999999999988422111111221 122221 233 6677999998877 5555 46766653
No 218
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=97.21 E-value=0.00037 Score=48.12 Aligned_cols=64 Identities=17% Similarity=0.072 Sum_probs=44.8
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+.+++.++|+++|+++++|.+...- .+.+...+....| ++.-|++|.+|.|. .|.+++++++++
T Consensus 176 ~~~~l~~l~~~~~~~li~De~y~~~----~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~ 243 (361)
T PRK00950 176 PEEDIRKILESTDALVFVDEAYVEF----AEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLID 243 (361)
T ss_pred CHHHHHHHHHHCCcEEEEECchhhh----CccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHH
Confidence 5688999999999999999985321 1333444433334 55569999998784 467788888764
No 219
>PRK06290 aspartate aminotransferase; Provisional
Probab=97.21 E-value=0.00045 Score=49.44 Aligned_cols=67 Identities=24% Similarity=0.261 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHh--cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVC--ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~--~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+- ....+.+ .++.++. ...+++.-|+||.+|.|. .|.+++++++++
T Consensus 199 e~l~~l~~la~~~~~~iI~DEaY--~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~~l~~ 271 (410)
T PRK06290 199 EFYEEVVDFAKENNIIVVQDAAY--AALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIVK 271 (410)
T ss_pred HHHHHHHHHHHHcCeEEEEecch--hhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCHHHHH
Confidence 46899999999999999999662 1111112 2333332 234689999999988884 478888888765
No 220
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=97.16 E-value=0.0011 Score=48.81 Aligned_cols=63 Identities=17% Similarity=0.190 Sum_probs=39.5
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCC-CCHHHHhcCCcEEEEcCCCCCccc------eeEEEEecccccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKGLGAP------VGSILAGPEEFIQ 70 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~-~~~~~~~~~~D~v~~s~~K~lg~p------~gg~l~g~~~~i~ 70 (71)
++++++|++++|++|..+++ |+-. .+..+ .+|.++ ++|++ +.-||-+|.| ..|++..+++++.
T Consensus 212 ~ed~~~i~~~~h~~gal~~~-~ad~---~aL~~l~~Pge~--GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r 281 (429)
T PF02347_consen 212 FEDIKEIADIAHAAGALVIV-GADP---NALGGLKSPGEY--GADIV-VGEHQTFGIPMGFGGPGAGFFAVREDLVR 281 (429)
T ss_dssp --THHHHHHHHHHTT-EEEE-CGGC---CGCCTC--GGGG--T-SEE-EECCTTTT---CCC-S--EEEEE-GGGGG
T ss_pred EeeHHHHHHHHHHcCCEEEE-ecCH---HHHhCcCChhhc--CccEE-eeCCCCCcccCCCCCCCeeeEEEhhhhhh
Confidence 35699999999999999988 7732 22222 345675 89999 7778866555 5678988888875
No 221
>PRK07036 hypothetical protein; Provisional
Probab=97.16 E-value=0.00089 Score=48.99 Aligned_cols=60 Identities=22% Similarity=0.459 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCHH-HHhcCCcEEEEcCCCCCcc---ceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPLA-EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~~-~~~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++| |. |.-. ..+ .. .+--..|++++ .|.+++ |+|+++ ++++++
T Consensus 241 ~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~---~~~--~~~~~gv~PDivt~--gK~l~gG~~Pi~av~-~~~~i~ 309 (466)
T PRK07036 241 GYHARMREICRRYDILYISDEVVTGFGRLGH---FFA--SEAVFGIQPDIITF--AKGLTSGYQPLGAVI-ISERLL 309 (466)
T ss_pred HHHHHHHHHHHHcCCEEEEeechhCCCcCch---hhh--hhhhcCCCCCEEEE--ccccccCccccEEEE-EcHHHH
Confidence 46899999999999999999 44 3210 000 11 11224688887 565543 877666 455553
No 222
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=97.15 E-value=0.00069 Score=47.89 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=40.5
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-hcCCcEEEEcCCCCCcc---ceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-CASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~i~ 70 (71)
++++|.++|++||+++++|-+.. .....|..+. +. ....|++++| |.+++ |+| .+++++++++
T Consensus 208 ~l~~l~~l~~~~~~lli~DEv~~--g~g~~G~~~~~~~~~~~~di~~~g--K~l~~g~~~ig-~v~~~~~i~~ 275 (401)
T TIGR01885 208 YLKKVRELCTKHNVLLIADEIQT--GLGRTGKLLCVDHENVKPDIVLLG--KALSGGVYPVS-AVLADDDVML 275 (401)
T ss_pred HHHHHHHHHHHcCCEEEEechhh--CCCccchhhHHhhcCCCCCEEEee--ccccCCCCCcE-EEEEcHHHHh
Confidence 48999999999999999997631 1111232221 22 1246888876 88764 444 5566777654
No 223
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=97.13 E-value=0.00064 Score=47.47 Aligned_cols=64 Identities=22% Similarity=0.399 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+.- .....|. +........|+++| +|.+++ |+|. +++++++++
T Consensus 203 ~~l~~l~~l~~~~~~~lI~DE~~~--g~g~~g~~~~~~~~~~~pdi~t~--sK~~~~G~rig~-~~~~~~~~~ 270 (396)
T PRK02627 203 EYLQALRELCDENGILLILDEVQT--GMGRTGKLFAYQHYGIEPDIMTL--AKGLGGGVPIGA-VLAKEKVAD 270 (396)
T ss_pred HHHHHHHHHHHHcCCEEEEechhc--CCCccCceeeehhcCCCCCEEEE--cchhhCCcccEE-EEEcHHHHh
Confidence 358999999999999999997632 0011121 11122223577665 587773 4454 556666654
No 224
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=97.11 E-value=0.0012 Score=47.47 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=37.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCcc---ceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~ 68 (71)
+++++|.++|++||+.+++|-..-- ....|.-. ....-..|++++| |.++. |+|.+++ ++++
T Consensus 219 ~~l~~l~~lc~~~g~llI~DEV~tG--~GrtG~~~~~~~~~v~PDi~t~~--K~l~~~G~pigav~~-~~~i 285 (425)
T PRK09264 219 EWLQRLAKLCRKHDILLIVDDIQAG--CGRTGTFFSFERAGITPDIVTLS--KSISGYGLPMALVLI-KPEL 285 (425)
T ss_pred HHHHHHHHHHHHcCcEEEEechhhC--CccccHHHHHhhcCCCCCEEEec--cccCCCccceEEEEE-chhh
Confidence 4789999999999999999965310 00011111 1122245888775 87753 5565554 4443
No 225
>PRK12403 putative aminotransferase; Provisional
Probab=97.10 E-value=0.00074 Score=49.31 Aligned_cols=63 Identities=19% Similarity=0.246 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCc---cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLG---APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++|=.+-- .-..|.- ...+--..|++++ .|.++ .|+|++++ +++++
T Consensus 243 ~yl~~lr~lc~~~g~lLI~DEV~tG--fGRtG~~~a~e~~gv~PDiv~~--gK~lggG~~Piga~v~-~~~i~ 310 (460)
T PRK12403 243 SYWPEIQRICRQYDVLLCADEVIGG--FGRTGEWFAHEHFGFEPDTLSI--AKGLTSGYVPMGGLVL-SKRIA 310 (460)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccC--CCcCchhhhhhhcCCCCCeEEE--cccccccccceEEEEE-CHHHH
Confidence 3589999999999999999933100 0001111 1122223588875 67666 59888774 55543
No 226
>KOG1359|consensus
Probab=97.09 E-value=0.00038 Score=49.90 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=52.8
Q ss_pred CcHHHHHHHHHhcCCcEEEe---cccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD---GARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D---gAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
.++++|++++++||..+++| |..++. ..|....|. ...+|++.--+.|.+|+-.||...|++.||+
T Consensus 210 aPl~ei~~La~kYgaLlfiDecHaTgf~G---~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~ 281 (417)
T KOG1359|consen 210 APLEEISQLAKKYGALLFIDECHATGFFG---ETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLIS 281 (417)
T ss_pred ccHHHHHHHHHhcCcEEEEeecccceeec---CCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHHH
Confidence 58999999999999999999 333331 234445555 3678999999999999999999999999874
No 227
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=97.09 E-value=0.00085 Score=48.66 Aligned_cols=61 Identities=25% Similarity=0.347 Sum_probs=45.8
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCcccee-EEEEecccc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEF 68 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~p~g-g~l~g~~~~ 68 (71)
++++++|+++|++||..++||+---+ -+.+ +.+ =++|.+.-+.-|.+++|=| +++.-+++.
T Consensus 147 lnpl~~I~~~~k~~g~l~iVDaVsS~-----Gg~~~~vd~--wgiDv~itgSQK~l~~PPGla~v~~S~~a 210 (383)
T COG0075 147 LNPLKEIAKAAKEHGALLIVDAVSSL-----GGEPLKVDE--WGIDVAITGSQKALGAPPGLAFVAVSERA 210 (383)
T ss_pred cCcHHHHHHHHHHcCCEEEEEecccC-----CCcccchhh--cCccEEEecCchhccCCCccceeEECHHH
Confidence 46899999999999999999976211 2333 334 4899999999999999965 455555443
No 228
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=97.09 E-value=0.0013 Score=46.55 Aligned_cols=67 Identities=15% Similarity=0.027 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|++|+++++.|-+- ......+ .++..+...-+ ++.-|+||.+|.|. -|.+++++++++
T Consensus 196 ~~~~~l~~~a~~~~~~iI~De~Y--~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlRiG~~i~~~~li~ 269 (409)
T PRK07590 196 EQLKAWVDYAKENGSLILFDAAY--EAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTRCAYTVVPKELKG 269 (409)
T ss_pred HHHHHHHHHHHHcCeEEEEEccc--hhhccCCCCCcchhhCCCcccceEEEecCccccCCcCceeEEEEcCHHHhh
Confidence 46899999999999999999651 1111112 12333321122 44569999988774 578888888875
No 229
>PRK06541 hypothetical protein; Provisional
Probab=97.09 E-value=0.0011 Score=48.53 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=37.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCcc---ceeEEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGA---PVGSILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~---p~gg~l~g~ 65 (71)
+.++++.++|++||+.+++|=..-- .-..|.. ...+--..|+++ ..|.+++ |+|+++..+
T Consensus 242 ~yl~~l~~lc~~~g~llI~DEV~tG--fGR~G~~~a~~~~gv~PDivt--~gK~l~~G~~pigav~~~~ 306 (460)
T PRK06541 242 GYFERVREICDRYDVLLVSDEVICA--FGRLGEMFGCERFGYVPDIIT--CAKGITSGYSPLGAMIASD 306 (460)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhC--CCcCchhhhhhhcCCCCCEEE--ecccccCCccceeEEEEcH
Confidence 4589999999999999999933100 0001111 112222468886 4787774 888776643
No 230
>PRK06062 hypothetical protein; Provisional
Probab=97.05 E-value=0.00062 Score=49.58 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCcc---ceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++|=.+-- .-..|.- ...+--..|+++| .|.+|+ |+|+++..+ +++
T Consensus 235 ~yl~~lr~lc~~~g~lLI~DEV~tG--fGRtG~~~a~~~~gv~PDi~t~--gK~lggG~~Pigav~~~~-~i~ 302 (451)
T PRK06062 235 GYLAGVRELCDRHGIVLIADEVMAG--FGRTGKWFAIEHFGVVPDLITF--AKGVNSGYVPLGGVAISE-AIA 302 (451)
T ss_pred HHHHHHHHHHHHcCCEEEeeccccC--CCcCcHHHHHHhcCCCCCeeee--chhhhcCCcCcEEEEEcH-HHH
Confidence 3589999999999999999922100 0001111 1112224688876 677775 888776654 554
No 231
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=97.05 E-value=0.00047 Score=50.09 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH---------hcCCcEEEEcCCCCCccceeE-EEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV---------CASVDTVMFCLSKGLGAPVGS-ILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~---------~~~~D~v~~s~~K~lg~p~gg-~l~g~ 65 (71)
|++.+|+++|+++|||.++-+| ||..-..+ ....|.+.=|.+|++-.|.|| ++.+.
T Consensus 172 D~i~~IakiC~~~~IPhlvNnA--------YgvQ~~~~~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~ 237 (389)
T PF05889_consen 172 DDIEEIAKICKEYDIPHLVNNA--------YGVQSSKCMHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASF 237 (389)
T ss_dssp --HHHHHHHHHHHT--EEEEGT--------TTTT-HHHHHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEES
T ss_pred ccHHHHHHHHHHcCCceEEccc--------hhhhHHHHHHHHHHHHhcCCcceeeeecCCCEEecCCCcEEEec
Confidence 6799999999999999999999 77753322 257899999999999999976 44443
No 232
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=97.05 E-value=0.0013 Score=47.22 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCcc---ceeEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLGA---PVGSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg~---p~gg~l~g 64 (71)
+.+++|.++|++||+++++|-..- ..-..|.-. ....-..|++++| |++++ |+|.+++.
T Consensus 215 ~~l~~l~~lc~~~g~llI~DEV~t--G~GRtG~~~a~~~~~v~PDi~~~~--K~lg~~G~pigav~~~ 278 (412)
T TIGR02407 215 EWLQRLEKLCRRHDILLIVDDIQA--GCGRTGTFFSFEPAGIEPDIVCLS--KSISGYGLPLALTLIK 278 (412)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--CCCccchhHHhcccCCCCCEEEec--hhccCCccceeEEEEc
Confidence 468999999999999999995521 000011111 1112346888876 87764 66666553
No 233
>PRK06348 aspartate aminotransferase; Provisional
Probab=97.04 E-value=0.00079 Score=47.28 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=43.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHh--cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVC--ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~--~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++++++++|-+-. ...+.+ .++..+. ..--++.-|++|.+|.|. .|.+++++++++
T Consensus 182 ~~~~~l~~~a~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~~~ 254 (384)
T PRK06348 182 ETLEEIAKIAIEYDLFIISDEVYD--GFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYIIE 254 (384)
T ss_pred HHHHHHHHHHHHCCeEEEEecccc--cceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHHHH
Confidence 468999999999999999996621 111111 1233332 112366679999988774 577878887764
No 234
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=96.99 E-value=0.0017 Score=45.92 Aligned_cols=66 Identities=18% Similarity=0.072 Sum_probs=42.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCc--EEEEcCCCCCccce--eEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i 69 (71)
+++++|.++|++|++++++|-+- ......+ .++.++....+ ++.-|++|.+|.|. -|.++++++++
T Consensus 193 ~~~~~l~~~a~~~~~~iI~De~y--~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~~i~~~~l~ 265 (402)
T TIGR03542 193 EQLKELVDYANEHGSLILFDAAY--SAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGWTVVPKELT 265 (402)
T ss_pred HHHHHHHHHHHHcCeEEEEEchh--hhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEEEEecHHHh
Confidence 46899999999999999999762 1111111 11222222122 44679999998884 56777787765
No 235
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=96.96 E-value=0.0012 Score=45.29 Aligned_cols=65 Identities=18% Similarity=0.052 Sum_probs=39.2
Q ss_pred cHHHHHHHHHhc--CCcEEEecccchHHhhhCCCCHHHH-hcC-CcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEH--NIPVHMDGARVFNAASYLGLPLAEV-CAS-VDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~--gi~l~~DgAr~~~~~~~~~~~~~~~-~~~-~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++.++++.+ ++++++|.+.. ... .+.+..+. ... .+++..|++|++|.|. .|.+++++++++
T Consensus 160 ~~~~~~~l~~~~~~~~~ii~D~~y~--~~~-~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 230 (346)
T TIGR01141 160 SRSDIEAVLERTPEDALVVVDEAYG--EFS-GEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIID 230 (346)
T ss_pred CHHHHHHHHHhCCCCcEEEEECchh--hhc-CCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHH
Confidence 345555666555 99999998832 111 11122222 122 2366778899997663 478888888765
No 236
>PRK07480 putative aminotransferase; Validated
Probab=96.96 E-value=0.0014 Score=47.89 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCcc---ceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGA---PVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~ 68 (71)
+.++++.++|++||+.+++| |. | .|.- ...+--..|+++| .|.+++ |+|+++. ++++
T Consensus 240 ~yl~~lr~lc~~~g~llI~DEV~tGfGR-------tG~~~a~~~~gv~PDiv~~--gK~l~gG~~Pi~av~~-~~~i 306 (456)
T PRK07480 240 TYWPEIQRICRKYDILLVADEVICGFGR-------TGEWFGSQHFGIKPDLMTI--AKGLTSGYIPMGAVGV-GDRV 306 (456)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCc-------CcchhhhhhcCCCCCeeee--ehhhccCCccceEEEE-cHHH
Confidence 36899999999999999999 33 2 1211 1122234688877 576653 8877666 4554
No 237
>PRK06836 aspartate aminotransferase; Provisional
Probab=96.96 E-value=0.0012 Score=46.68 Aligned_cols=65 Identities=22% Similarity=0.158 Sum_probs=42.0
Q ss_pred CcHHHHHHHHHh------cCCcEEEecccchHHhhhCCCCHHHHhc--CCcEEEEcCCCCCccce--eEEEEecccc
Q psy15462 2 SIDPQLKARCQE------HNIPVHMDGARVFNAASYLGLPLAEVCA--SVDTVMFCLSKGLGAPV--GSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~------~gi~l~~DgAr~~~~~~~~~~~~~~~~~--~~D~v~~s~~K~lg~p~--gg~l~g~~~~ 68 (71)
+++++|.++|++ ||+++++|.+-.. ..+.+.+...+.+ .-.++..|++|.+|.|. -|.+++++++
T Consensus 188 ~~~~~l~~la~~~~~~~~~~~~ii~De~y~~--~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~ 262 (394)
T PRK06836 188 ETLKALAALLEEKSKEYGRPIYLISDEPYRE--IVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPEM 262 (394)
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEEeccccc--cccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHHH
Confidence 468899999999 8999999976211 1111212111111 12578899999998774 4667776654
No 238
>PRK06107 aspartate aminotransferase; Provisional
Probab=96.93 E-value=0.00067 Score=47.97 Aligned_cols=67 Identities=18% Similarity=0.091 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHhc-CCcEEEecccchHHhhhCCC---CHHHHhcC---CcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEH-NIPVHMDGARVFNAASYLGL---PLAEVCAS---VDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~-gi~l~~DgAr~~~~~~~~~~---~~~~~~~~---~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++++++|+++ ++++++|-+- ....+.+. ++..+... --++..|+||.++.|. -|.+++++++++
T Consensus 186 ~~~~~l~~~a~~~~~~~iI~De~y--~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~ 261 (402)
T PRK06107 186 AELRALADVLLRHPHVLVLTDDIY--DHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIA 261 (402)
T ss_pred HHHHHHHHHHHHcCCeEEEEehhc--cccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHH
Confidence 4688999999998 9999999551 11111121 23333221 2255667799998785 478888888875
No 239
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=96.93 E-value=0.0015 Score=46.23 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH--HHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA--EVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~--~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+.- .....|.... ......|+.+| +|.++ .| .|.+++++++++
T Consensus 205 ~~l~~l~~l~~~~g~~lI~DEv~~--g~g~~g~~~~~~~~~~~pdi~s~--sK~l~~G~r-ig~vv~~~~i~~ 272 (403)
T PRK05093 205 EFLQGLRELCDQHNALLIFDEVQT--GMGRTGDLFAYMHYGVTPDILTS--AKALGGGFP-IGAMLTTAEIAS 272 (403)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--CCCCCccchhhhhcCCCCCEEEe--cccccCCcc-eEEEEEcHHHHh
Confidence 458999999999999999995521 1111222221 11123577665 56554 34 456666777654
No 240
>KOG2467|consensus
Probab=96.90 E-value=0.0013 Score=48.28 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=48.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPE 66 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~ 66 (71)
+..++.++|.+.|..++.|=|++..-.+ .+.-+.- .++||+|+-..||.|-+|.|++|.-|+
T Consensus 205 DYaR~R~Iad~~gA~Lm~DMAHISgLVA-A~vipsP-Fey~DiVTTTTHKsLRGPRg~mIFyRk 266 (477)
T KOG2467|consen 205 DYARFRKIADKVGAYLMADMAHISGLVA-AGVIPSP-FEYCDIVTTTTHKSLRGPRGAMIFYRK 266 (477)
T ss_pred cHHHHHHHHHhcCceeehhhhhHHHHHh-cccCCCc-ccccceeeccccccccCCcceeEEEec
Confidence 3568899999999999999777654333 3333221 268999999999999999999997665
No 241
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=96.88 E-value=0.0013 Score=45.48 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC-CHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL-PLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~-~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++++++++|-+ +......+. +...+....+ ++.-|+||.+|.|. -|.+++++++++
T Consensus 142 ~~~~~l~~~a~~~~~~iI~DE~--Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~ 213 (332)
T PRK06425 142 DSLLTISEICRKKGALLFIDEA--FIDFVPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMK 213 (332)
T ss_pred HHHHHHHHHHHHcCCEEEEecc--hhccccccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHH
Confidence 4688999999999999999966 211111111 2233333223 55569999988784 478888888875
No 242
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=96.88 E-value=0.0034 Score=46.30 Aligned_cols=64 Identities=27% Similarity=0.380 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCC-------c--EEEEcCCCCCccce--eEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASV-------D--TVMFCLSKGLGAPV--GSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~-------D--~v~~s~~K~lg~p~--gg~l~g~~~ 67 (71)
+++++|.++|++|+++++.|-+ +....+.+. ++.++.... | .+..|+||.+|.|. -|.++++.+
T Consensus 219 e~l~~L~~~a~~~~i~lI~DEi--Y~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGlRvG~li~~~~ 296 (496)
T PLN02376 219 DTLTNLVRFVTRKNIHLVVDEI--YAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGFRVGIVYSFND 296 (496)
T ss_pred HHHHHHHHHHHHcCCEEEEEcC--ccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcceEEEEEECCH
Confidence 4689999999999999999965 111112222 333442211 3 34679999998883 567776433
No 243
>PRK07481 hypothetical protein; Provisional
Probab=96.87 E-value=0.0016 Score=47.38 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCHHHHhcCCcEEEEcCCCCCc---cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPLAEVCASVDTVMFCLSKGLG---APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~~~~i 69 (71)
+.+++++++|++||+.+++| |. |.-.- .+ ...+.-..|++++ .|+++ .|+|++++ +++++
T Consensus 234 ~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~---~a--~~~~gv~PDiv~~--gKgl~gG~~Pi~av~~-~~~i~ 301 (449)
T PRK07481 234 NFWPLVREVCDRHGILLIADEVVTGFGRTGSW---FG--SRGWGVKPDIMCL--AKGITSGYVPLGATMV-NARIA 301 (449)
T ss_pred HHHHHHHHHHHHcCCEEEEeehhhCcCcCchh---hH--hhhcCCCCCEEEE--eecccCCCcCceEEEE-cHHHH
Confidence 35899999999999999999 44 21110 00 1112234699888 56555 38776555 44443
No 244
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=96.87 E-value=0.0019 Score=46.95 Aligned_cols=63 Identities=24% Similarity=0.416 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc---cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG---APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~~~~i 69 (71)
+.+++|.++|++||+.+++|=.+- ..-..|... ..+.-..|+++| .|.++ .|+|++++ +++++
T Consensus 236 ~fl~~lr~lc~~~g~llI~DEv~t--G~GrtG~~~a~~~~gv~PDivt~--gK~l~gG~~P~gav~~-~~~i~ 303 (442)
T PRK13360 236 GYLQRLREICDKHGILLIFDEVIT--GFGRLGAPFAAQYFGVTPDLLTC--AKGLTNGAIPMGAVFV-SSEIH 303 (442)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--CCCCCccchhhhhcCCCCceeee--eeccccCccceEEEEE-cHHHH
Confidence 358999999999999999993310 000122221 112124688766 68775 58887554 55543
No 245
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=96.84 E-value=0.0015 Score=47.56 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+.+++|.++|++||+.+++|=++. .. ..|.- ...+--..|++++ .|.+| .| +|.+++++++++
T Consensus 222 ~yl~~l~~lc~~~g~llI~DEv~t--G~-R~G~~ga~~~~gv~PDi~~~--gK~lggG~p-~~av~~~~~i~~ 288 (433)
T PRK00615 222 GFIEGIIQTCRRTGSLSIMDEVVT--GF-RVAQGGAAAIYHVKPDITVY--GKILGGGLP-AAAVVAHKSIMD 288 (433)
T ss_pred HHHHHHHHHHHHcCCEEEEEcccc--cc-cccHhHHHHhcCCCCCeEEE--cccccCCcc-eeeeeecHHHHh
Confidence 357899999999999999994321 00 01110 1112234688775 78776 36 557777877654
No 246
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=96.81 E-value=0.0018 Score=45.49 Aligned_cols=64 Identities=23% Similarity=0.371 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-hcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-CASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|-+.- .....|..+. +. .-..|+++| +|.++ .|.|. +++++++++
T Consensus 196 ~~l~~l~~l~~~~g~~lI~DEv~~--g~g~~g~~~~~~~~~~~pdi~t~--sK~l~~G~~ig~-~~~~~~~~~ 263 (389)
T PRK01278 196 EFLKGLRQLCDENGLLLIFDEVQC--GMGRTGKLFAHEWAGVTPDIMAV--AKGIGGGFPLGA-CLATEEAAK 263 (389)
T ss_pred HHHHHHHHHHHHcCCEEEEecccc--CCCcCCcceeecccCCCCCEEEE--ehhccCCcceEE-EEEcHHHHh
Confidence 478999999999999999996632 0111121111 11 122476654 67765 35555 556666654
No 247
>PLN02656 tyrosine transaminase
Probab=96.79 E-value=0.0018 Score=46.04 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=39.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCc-EEEEcCCCCCccce--eEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVD-TVMFCLSKGLGAPV--GSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~g 64 (71)
+++++|.++|+++|+++++|.+ +....+.+. ++..+...-. ++.-|+||.++.|. -|.+++
T Consensus 189 ~~~~~i~~~a~~~~~~ii~De~--y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i~ 255 (409)
T PLN02656 189 QHLKKIAETAEKLKILVIADEV--YGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFVT 255 (409)
T ss_pred HHHHHHHHHHHHcCCEEEEehh--hhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEEE
Confidence 4689999999999999999977 221122221 2222211111 56678999878884 556665
No 248
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=96.78 E-value=0.0031 Score=44.43 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCc-EEEEcCCCCCccce--eEEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVD-TVMFCLSKGLGAPV--GSILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~g~ 65 (71)
+++++|.++|+++|+++++|.+ +....+.+ .++..+..... ++.-|+||.++.|. -|.++++
T Consensus 188 ~~~~~l~~~a~~~~~~ii~De~--y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~ 255 (401)
T TIGR01264 188 QHLEEILAVAERQCLPIIADEI--YGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIH 255 (401)
T ss_pred HHHHHHHHHHHHCCCEEEEEhh--hhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEec
Confidence 4689999999999999999977 22222222 23334432222 56789999878884 4566554
No 249
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=96.78 E-value=0.0019 Score=45.02 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCc--EEEEcCCCCCccce--eEEEEe-cccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVD--TVMFCLSKGLGAPV--GSILAG-PEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g-~~~~i~ 70 (71)
+++++|.++|+++++++++|-+- ......+. ++.......+ ++.-|++|.+|.|. .|.++. ++++++
T Consensus 161 ~~~~~l~~~a~~~~~~ii~De~Y--~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~ 234 (354)
T PRK06358 161 EEMKKILDKCEKRNIYLIIDEAF--MDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAE 234 (354)
T ss_pred HHHHHHHHHHHhcCCEEEEeCcc--cccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHH
Confidence 46899999999999999999762 11111121 1112222223 67789999998784 455554 556553
No 250
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=96.77 E-value=0.0017 Score=47.22 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+.++++.++|++||+.+++|=..-- .-..|.- ...+.-..|++++|-.-..|.|+| .+++++++++
T Consensus 228 ~yl~~l~~lc~~~g~llI~DEv~tg--~GrtG~~~a~~~~gv~pDi~t~gK~l~~G~p~g-av~~~~~i~~ 295 (445)
T PRK08593 228 GYFEALYKFCREHGILFAVDDIQQG--LGRTGKWSSISHFNITPDLMSFGKSLAGGMPMS-AIVGRKEIME 295 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhC--CCcCchHHHHHhcCCCCCEeeecccccCCcccE-EEEEcHHHHh
Confidence 3589999999999999999954210 0011211 112223468887754444345755 5667777654
No 251
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=96.77 E-value=0.0023 Score=45.46 Aligned_cols=64 Identities=20% Similarity=0.333 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+++++|+++|++||+++++|-++. .....|. ....+.-..|++++ +|.+| .|+|+ +++++++++
T Consensus 200 ~~l~~l~~lc~~~g~llI~DEv~t--G~Gr~G~~~a~~~~gv~pDi~t~--~K~lggG~piga-v~~~~~i~~ 267 (397)
T TIGR03246 200 AFLKGLRELCDRHNALLIFDEVQT--GVGRTGELYAYMHYGVTPDILTS--AKALGGGFPIGA-MLTTTEIAA 267 (397)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--cCCccccchhhhhcCCCCCEEEe--ehhhhCCcceeE-EEEcHHHHH
Confidence 468999999999999999996631 0001121 11122234688755 67664 45554 455666654
No 252
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0021 Score=47.51 Aligned_cols=65 Identities=23% Similarity=0.320 Sum_probs=41.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEEcCCCCCccceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i 69 (71)
+.++++.++|++|||.+++|=.+-- ....|. .....--.-|++++|-.=+-|.|++ .+++++++.
T Consensus 243 ~fl~~l~~~~~~~gillI~DEVQtG--~GRTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~-avv~r~ei~ 309 (447)
T COG0160 243 GFLKALRKLCREHGILLIADEVQTG--FGRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLS-AVVGRAEIM 309 (447)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccC--CCccccchhhhhcCCCCCEEEecccccCCCcee-EEeccHHhc
Confidence 4689999999999999999922100 001120 0112112579999987777777876 556666654
No 253
>PRK07482 hypothetical protein; Provisional
Probab=96.76 E-value=0.0026 Score=46.47 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCHHHHhcCCcEEEEcCCCCCc---cceeEEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPLAEVCASVDTVMFCLSKGLG---APVGSILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~ 65 (71)
+.+++|.++|++||+.+++| |. |.-. ......+--..|++++ .|.++ .|++++++++
T Consensus 241 ~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-----~~a~~~~gv~PDiv~~--gKgl~gG~~Pi~av~~~~ 305 (461)
T PRK07482 241 GYWPAIQAVLKKYDILLIADEVVTGFGRLGS-----MFGSDHYGIEPDLITV--AKGLTSAYAPLSGSIVGE 305 (461)
T ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcCcc-----hhhHHhcCCCCCEEEE--ccccccCccccceeeecH
Confidence 47899999999999999999 54 3211 0011122235799998 46553 3888777654
No 254
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=96.76 E-value=0.0027 Score=44.88 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcC-Cc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCAS-VD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~-~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++++++++|-+-.. ........+.... .+ ++.-|+||. +.|. .|.+++++++++
T Consensus 199 ~~~~~l~~~a~~~~~~iI~De~Y~~---~~~~~~~~~~~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~ 268 (416)
T PRK09440 199 EELEKLDALARQHNIPLLIDNAYGP---PFPGIIFSEATPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEIIE 268 (416)
T ss_pred HHHHHHHHHHHHcCCcEEEeCCccc---cCCCcchhhcCccccCCeEEEeccccc-CCCcceEEEEeCCHHHHH
Confidence 4689999999999999999977100 0001111111111 12 566799994 7784 678888888875
No 255
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=96.75 E-value=0.0023 Score=46.28 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHH-HhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAE-VCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~-~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
++++++.++|++||+.+++|-+..- .-..+.-..+ +.-..|++++ .|.+|+ |.+ .+++++++++
T Consensus 204 ~~l~~l~~lc~~~g~lLI~DEv~tG--~~~~~~g~~~~~gv~PDi~t~--gK~lggG~p~~-av~~~~~i~~ 270 (431)
T PRK06209 204 GFLHEVRRLCHENGALFILDEMITG--FRWHMRGAQKLYGIVPDLSCF--GKALGNGFAVS-ALAGKREYME 270 (431)
T ss_pred HHHHHHHHHHHHcCCEEEEEccccc--CCcCcchhhHHhCCCcceeee--hhhhcCCcccE-EEEEHHHHHh
Confidence 3589999999999999999954211 0001111222 2234688665 787775 755 5556666653
No 256
>PRK13578 ornithine decarboxylase; Provisional
Probab=96.74 E-value=0.0013 Score=51.03 Aligned_cols=67 Identities=12% Similarity=-0.054 Sum_probs=44.7
Q ss_pred CcHHHHHHH-HHhcCCcEEEecccchHHhhh---CCCCHHHHhcCCc----EEEEcCCCCCccc-eeEEEEeccccc
Q psy15462 2 SIDPQLKAR-CQEHNIPVHMDGARVFNAASY---LGLPLAEVCASVD----TVMFCLSKGLGAP-VGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~-a~~~gi~l~~DgAr~~~~~~~---~~~~~~~~~~~~D----~v~~s~~K~lg~p-~gg~l~g~~~~i 69 (71)
-++++|.+. +|.++ ++|+|-|+.....-. .+.+...+..++| +++=|.||.+.+. |+++|-.+.+.|
T Consensus 298 ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i 373 (720)
T PRK13578 298 YNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHI 373 (720)
T ss_pred ecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCccc
Confidence 368899998 78888 999996632211000 1233333557899 9999999988877 577775444333
No 257
>KOG1383|consensus
Probab=96.74 E-value=0.0018 Score=48.16 Aligned_cols=69 Identities=25% Similarity=0.268 Sum_probs=45.6
Q ss_pred CCcHHHHHHHHHh-cCCcEEEecc-c-chHHhhhCCCCHHHH-hcCCcEEEEcCCCCCcccee--EEEEeccccc
Q psy15462 1 MSIDPQLKARCQE-HNIPVHMDGA-R-VFNAASYLGLPLAEV-CASVDTVMFCLSKGLGAPVG--SILAGPEEFI 69 (71)
Q Consensus 1 ~~~l~~i~~~a~~-~gi~l~~DgA-r-~~~~~~~~~~~~~~~-~~~~D~v~~s~~K~lg~p~g--g~l~g~~~~i 69 (71)
+|++++|.++.-| +++|+|+|++ + +.+.+-.++...-++ ..++-+++.++||...+|-| -++..++++.
T Consensus 234 ~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~ 308 (491)
T KOG1383|consen 234 IEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELL 308 (491)
T ss_pred hhhHHHHHHHHHHHhCCceeecccCccccccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEcccccc
Confidence 4789999999999 9999999955 1 111111111111112 26778999999998777865 3667776653
No 258
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=96.73 E-value=0.0027 Score=45.70 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+.+++|.++|++||+++++|-..-- ....|.. ...+....|+++| +|.++ .|+|+ +++++++++
T Consensus 219 ~~l~~l~~lc~~~g~llI~DEv~tg--~gr~G~~~a~~~~~~~pDi~t~--gK~l~~G~piga-v~~~~~i~~ 286 (421)
T PRK09792 219 ELVAAIRRLCDEHGIVMIADEVQSG--FARTGKLFAMDHYADKPDLMTM--AKSLAGGMPLSG-VVGNANIMD 286 (421)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccC--CCCCCchhHHHhcCCCCcEEEe--ehhhcCCCceEE-EEEcHHHHh
Confidence 4589999999999999999943110 0112322 2223245687666 66654 47776 566777654
No 259
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=96.73 E-value=0.0028 Score=46.12 Aligned_cols=63 Identities=22% Similarity=0.271 Sum_probs=39.3
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
.++++.++|++||+.+++|=..-- ....|.. ...+.-.-|++++ +|.++. |.| .+++++++++
T Consensus 226 ~l~~l~~l~~~~g~llI~DEv~~g--~gr~G~~~a~~~~~~~pDiitl--sK~l~~G~pig-av~~~~~i~~ 292 (443)
T PRK08360 226 YFKKLKKILDEHGILLVVDEVQSG--LGRTGKWFAIEHFGVEPDIITL--GKPLGGGLPIS-ATIGRAEIMD 292 (443)
T ss_pred HHHHHHHHHHHcCCEEEEeccccC--CCcCccchhhhhcCCCCCEEEe--cccccCCceeE-EEEEcHHHHh
Confidence 589999999999999999944210 0112321 1122223588776 787763 444 5667777664
No 260
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=96.73 E-value=0.0024 Score=44.72 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH--HHhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA--EVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~--~~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
++++++.++|+++|+.+++|.+.. .....|..+. .....-|++ +++|.++. |+| .+++++++++
T Consensus 186 ~~l~~~~~l~~~~~~~~i~De~~~--g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig-~~~~~~~~~~ 253 (375)
T PRK04260 186 DFVKALADYCQETGILLIVDEVQT--GMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVG-AMLAKSSLGG 253 (375)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--CCCcccchhhhHhhCCCCCEE--EecccccCCcceE-EEEEcHHHHh
Confidence 358999999999999999997742 1111222221 222335766 56887763 555 5555566543
No 261
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=96.73 E-value=0.0008 Score=48.38 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC-HHH-HhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP-LAE-VCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-~~~-~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+.+++|=+.- .. ..|.. ..+ +...-|+++ .+|.++. |+|++ ++++++++
T Consensus 218 ~~l~~l~~l~~~~~~llI~DEv~~--G~-r~g~~~~~~~~~~~pDi~~--~gK~l~~G~p~ga~-~~~~~i~~ 284 (426)
T PRK00062 218 GFLEGLRELCDEHGALLIFDEVMT--GF-RVALGGAQGYYGVTPDLTT--LGKIIGGGLPVGAF-GGRREIME 284 (426)
T ss_pred HHHHHHHHHHHHcCCEEEEeechh--cc-ccCCccHHHHhCCCcchHh--hhhHhhCCCcceee-eEHHHHHH
Confidence 358999999999999999994421 00 01111 112 212246654 4687765 76654 66777654
No 262
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=96.72 E-value=0.0025 Score=46.36 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc-cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG-APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg-~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++|-..-- .-..|... ..+--..|++++|-....| .|+|++ +++++++
T Consensus 239 ~yl~~l~~lc~~~g~llI~DEV~tG--~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av-~~~~~i~ 306 (445)
T PRK09221 239 GYLQRLREICDKHGILLIFDEVITG--FGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAV-IASDEIY 306 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEeehhhC--CCcCchhhHHHhcCCCCCEEEeccccccCcccceee-EEcHHHH
Confidence 3589999999999999999944200 00112221 1221235888776555445 587765 5566654
No 263
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=96.72 E-value=0.0053 Score=43.47 Aligned_cols=61 Identities=15% Similarity=0.114 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCc-EEEEcCCCCCccce--eEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVD-TVMFCLSKGLGAPV--GSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~g 64 (71)
+++++|.++|+++|+++++|.+- ....+.+ .++..+..... ++..|+||.++.|. -|.+++
T Consensus 189 ~~~~~i~~~a~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~ 255 (403)
T TIGR01265 189 DHLQKIAEVARKLGIPIIADEIY--GHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWIII 255 (403)
T ss_pred HHHHHHHHHHHHCCCEEEEEccc--cccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEEE
Confidence 46899999999999999999872 1111122 12333322222 56679999878883 344443
No 264
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=96.70 E-value=0.0025 Score=44.90 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHH--h--cC---Cc--EEEEcCCCCCccce--eEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEV--C--AS---VD--TVMFCLSKGLGAPV--GSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~--~--~~---~D--~v~~s~~K~lg~p~--gg~l~g~~~~ 68 (71)
+++++|.++|++|+++++.|=+- ....+.+ .++..+ . .. .| ++.-|++|.++.|. .|.+++++++
T Consensus 186 ~~~~~l~~~a~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~~~~~~l 263 (396)
T PRK09147 186 DDWKKLFALSDRYGFVIASDECY--SEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGLRSGFVAGDAAL 263 (396)
T ss_pred HHHHHHHHHHHHcCeEEEeeccc--cccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccceeeeecCCHHH
Confidence 57899999999999999999651 1111111 111111 0 11 23 78899999877774 5788898887
Q ss_pred cc
Q psy15462 69 IQ 70 (71)
Q Consensus 69 i~ 70 (71)
++
T Consensus 264 ~~ 265 (396)
T PRK09147 264 LK 265 (396)
T ss_pred HH
Confidence 75
No 265
>PRK03321 putative aminotransferase; Provisional
Probab=96.70 E-value=0.0014 Score=45.28 Aligned_cols=66 Identities=20% Similarity=0.093 Sum_probs=40.0
Q ss_pred cHHHHHHHHHh--cCCcEEEecccchHHhhhCCC--C-HHHHhcCCcEE-EEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQE--HNIPVHMDGARVFNAASYLGL--P-LAEVCASVDTV-MFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~--~gi~l~~DgAr~~~~~~~~~~--~-~~~~~~~~D~v-~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+.+++.++|++ +++++++|.+- ......+. + +..+...-+++ .-|++|.+|.|. .|.+++++++++
T Consensus 163 ~~~~l~~l~~~~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~ 236 (352)
T PRK03321 163 TPAELARFLDAVPADVLVVLDEAY--VEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIA 236 (352)
T ss_pred CHHHHHHHHHhCCCCeEEEEechH--HHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHH
Confidence 35667777766 69999999872 11121121 1 12222222444 458999988774 577888888775
No 266
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=96.68 E-value=0.0041 Score=45.12 Aligned_cols=59 Identities=22% Similarity=0.347 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCccceeEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGAPVGSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~ 66 (71)
+++++++++|++||+.++.| |.+ ..|.- ...+.-..|++++|-.=+.|.|+|+++..++
T Consensus 227 ~yl~~lr~lc~~~g~llI~DEV~tGfG------RtG~~~a~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~ 291 (442)
T TIGR00709 227 EWLQKIREVTRKHDIKLILDEVQAGFG------RSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE 291 (442)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCC------CCCchhHHHHcCCCCcEEEEcccccCCcccEEEEEchH
Confidence 47899999999999999999 331 12211 1222234699997544445678887776443
No 267
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=96.65 E-value=0.003 Score=45.50 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh--cCCcEEEEcCCCCCcc--ceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC--ASVDTVMFCLSKGLGA--PVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~--~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i 69 (71)
++++++.++|++||+++++|=..-. ....|....... .-.|+++| +|.+++ |+|+++.+ ++++
T Consensus 208 ~~l~~l~~l~~~~g~llI~DEv~tg--~gr~G~~~a~~~~~~~pdi~t~--~K~l~~G~piga~~~~-~~~~ 274 (408)
T PRK04612 208 GFLARVRALCDQHDALLVLDEIQCG--MGRTGTLFAHWQEQVTPDIVTL--AKALGGGFPIGAMLAG-PKVA 274 (408)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccC--CCcCCchhhhhhcCCCCCEEEE--cchhcCCCceEEEEEC-HHHH
Confidence 3689999999999999999944210 011222222111 23466666 566653 78876655 4443
No 268
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=96.64 E-value=0.0053 Score=45.11 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCcEEE-EcCCCCCccce--eEEEE--eccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVDTVM-FCLSKGLGAPV--GSILA--GPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D~v~-~s~~K~lg~p~--gg~l~--g~~~ 67 (71)
+++++|.++|++|+++++.|-+ +....+.+. ++.++....-+++ -|+||.++.|. -|.++ ++++
T Consensus 301 ~~l~~i~~~a~~~~~~ii~DE~--Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~~~~~ 372 (517)
T PRK13355 301 EVLQQIVDIAREHQLIIFSDEI--YDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILSGNKR 372 (517)
T ss_pred HHHHHHHHHHHHcCcEEEEehh--hhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEeeCchh
Confidence 4689999999999999999976 222222222 3344422222343 57899877774 45555 5553
No 269
>PRK05965 hypothetical protein; Provisional
Probab=96.64 E-value=0.0039 Score=45.57 Aligned_cols=62 Identities=18% Similarity=0.240 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCHHHHhcCCcEEEEcCCCCCc-cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPLAEVCASVDTVMFCLSKGLG-APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg-~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++| |. |.-.- .....+--..|+++++-.=..| .|+|++++ ++++.
T Consensus 236 ~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~-----~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~-~~~i~ 303 (459)
T PRK05965 236 GWLKAMREACRELGILFVADEVITGFGRTGPL-----FACEAEGVVPDLMTVAKGLTSGYVPMGAVLM-SDHVY 303 (459)
T ss_pred HHHHHHHHHHHHcCCEEEEechhccCccCchh-----hhHhhcCCCCCeEEechhhccCCcceeEEEE-cHHHH
Confidence 46899999999999999999 54 32110 0111222347999986443344 48887664 55543
No 270
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=96.63 E-value=0.0011 Score=47.13 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCcc--ceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~--p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|=+.- .. ..|.. ...+...-|++ +++|.+++ |+ |.+++++++++
T Consensus 216 ~~l~~l~~l~~~~~~llI~DEv~~--g~-r~g~~~~~~~~~~~pDi~--t~sK~l~~G~pi-g~v~~~~~i~~ 282 (423)
T TIGR00713 216 EFLAGLRALTEEYGSLLIFDEVMT--GF-RVALGGAQEYFGVEPDLT--TLGKIIGGGLPV-GAFGGRREIME 282 (423)
T ss_pred HHHHHHHHHHHHhCCEEEEEcccc--cc-ccCcchhHHHhCCCcchh--hhhhhhcCCCce-eeeeEHHHHHH
Confidence 458999999999999999994321 00 01111 11122234655 56887763 44 56677777654
No 271
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=96.60 E-value=0.0026 Score=46.56 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCc---cceeEEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLG---APVGSILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~ 65 (71)
++++++.++|++||+.+++|=.+-- .-..|.- ...+--..|++++ .|.+| .|+|++++.+
T Consensus 252 ~yl~~lr~lc~~~g~llI~DEV~tG--~GRtG~~~a~e~~gv~PDivt~--gK~lggG~~Pigav~~~~ 316 (459)
T PRK11522 252 GYLTAVRKLCDEFGALLILDEVQTG--MGRTGKMFACEHENVQPDILCL--AKALGGGVMPIGATIATE 316 (459)
T ss_pred HHHHHHHHHHHHcCCEEEeccceec--CCccchhhhhhccCCCCCEEEe--chhhhCCCccceeEEEcH
Confidence 3589999999999999999933210 0001111 1112123588766 67776 4888777754
No 272
>PLN02452 phosphoserine transaminase
Probab=96.58 E-value=0.002 Score=46.05 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=34.0
Q ss_pred CcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 16 IPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 16 i~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
+++++|++..+ .....++.+ .|+..+|.+|.+|.|.-++++.+++++++
T Consensus 171 ~~lvVDa~Ss~---g~~pidv~~----~~v~~~saqK~lGP~Gl~~v~vr~~~l~~ 219 (365)
T PLN02452 171 VPLVADMSSNF---LSKPVDVSK----YGVIYAGAQKNVGPSGVTIVIIRKDLIGN 219 (365)
T ss_pred CeEEEECCccc---cCcccCHHH----cCEEEEecccccCCCCeEEEEEcHHHHhh
Confidence 89999998543 122333444 34556899999986656799999988753
No 273
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=96.58 E-value=0.0067 Score=43.26 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=37.8
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCccceeEEEEe
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGAPVGSILAG 64 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~p~gg~l~g 64 (71)
+++++.++|++||+.++.|-.+- .. ..|.- ...+.-..|+++++-.=+.|.|+++++..
T Consensus 184 yl~~lr~lc~~~gillI~DEv~t--G~-RtG~~~a~~~~gv~PDiv~~gK~lggG~P~~a~~~~ 244 (364)
T PRK04013 184 FVKTLRDLTEDVGALLIADEVQS--GL-RTGKFLAIEHYKVEPDIVTMGKGIGNGVPVSLTLTN 244 (364)
T ss_pred HHHHHHHHHHHcCCEEEEechhh--cC-CCCchhHHHhcCCCCCEEEecccccCCceeEEEEec
Confidence 58999999999999999994421 00 12221 12233457899985333446688877654
No 274
>PRK09265 aminotransferase AlaT; Validated
Probab=96.57 E-value=0.0064 Score=43.00 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCCcEE-EEcCCCCCccce--eEEEE
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASVDTV-MFCLSKGLGAPV--GSILA 63 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~D~v-~~s~~K~lg~p~--gg~l~ 63 (71)
+++++|.++|+++|+++++|-+- ....+.+ .++..+.....++ .-|++|.+|.|. -|.++
T Consensus 188 ~~~~~i~~~a~~~~~~ii~De~y--~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v 253 (404)
T PRK09265 188 ELLEEIVEIARQHNLIIFADEIY--DKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMV 253 (404)
T ss_pred HHHHHHHHHHHHCCCEEEEehhh--hhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEE
Confidence 45899999999999999999662 1111112 2333333333344 467799998883 34444
No 275
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=96.56 E-value=0.0037 Score=43.96 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=43.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--C--CHHHHh--cC---Cc--EEEEcCCCCCccce--eEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--L--PLAEVC--AS---VD--TVMFCLSKGLGAPV--GSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~--~~~~~~--~~---~D--~v~~s~~K~lg~p~--gg~l~g~~~~ 68 (71)
+++++|.++|++|+++++.|-+- ....+.+ . ++.... .+ .| ++.-|+||.++.|. -|.+++++++
T Consensus 185 ~~~~~l~~~a~~~~~~ii~De~Y--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~GlRvG~~i~~~~l 262 (393)
T TIGR03538 185 DTLKKLIELADQYGFIIASDECY--SELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGDAEI 262 (393)
T ss_pred HHHHHHHHHHHHCCEEEEECcch--hhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcccceEEEecCHHH
Confidence 46899999999999999999761 1111111 1 111111 11 11 78899999777774 5788888887
Q ss_pred cc
Q psy15462 69 IQ 70 (71)
Q Consensus 69 i~ 70 (71)
++
T Consensus 263 ~~ 264 (393)
T TIGR03538 263 LK 264 (393)
T ss_pred HH
Confidence 65
No 276
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=96.55 E-value=0.0046 Score=45.17 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc-cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG-APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg-~p~gg~l~g~~~~i 69 (71)
++++++.++|++||+.+++| |. | .|.-. ..+--..|+++++-.=..| .|+++++. ++++.
T Consensus 243 ~yl~~lr~lc~~~gillI~DEV~TG~GR-------tG~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~-~~ei~ 310 (453)
T PRK06943 243 SYLRGLRALCDRYGVHLIADEIAVGCGR-------TGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLS-RDAIF 310 (453)
T ss_pred HHHHHHHHHHHHcCCEEEeechhhCCCC-------CcchhHHHhCCCCCCeEeeehhhccCcccceEEEE-cHHHH
Confidence 47899999999999999999 44 2 12111 1222357999995333333 48776554 55543
No 277
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=96.52 E-value=0.0019 Score=47.52 Aligned_cols=62 Identities=26% Similarity=0.325 Sum_probs=45.2
Q ss_pred cHHHHHHHHHhcCCcEEEe----cccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMD----GARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~D----gAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
-++++.++|++||+.+++| |.|+. ++..-.-+.--.|+.+++--=+.|.|.| ++-|++|+++
T Consensus 222 Fl~~Lr~lt~e~G~lLI~DEViTGFR~~-----~gGaq~~~gi~PDlttlGKiIGGGlP~g-a~gGr~eiM~ 287 (432)
T COG0001 222 FLEGLRELTEEHGALLIFDEVITGFRVA-----LGGAQGYYGVEPDLTTLGKIIGGGLPIG-AFGGRAEIME 287 (432)
T ss_pred HHHHHHHHHHHcCcEEEEecchhhcccC-----CcccccccCcCcchhhhhhhhcCCccee-eeccHHHHHh
Confidence 4789999999999999999 88865 2222222234468887776666677755 8889988876
No 278
>PTZ00376 aspartate aminotransferase; Provisional
Probab=96.51 E-value=0.0029 Score=44.84 Aligned_cols=66 Identities=15% Similarity=0.090 Sum_probs=41.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC-----CHHHHhcCCc--EEEEcCCCCCccce---eEEE--Eeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL-----PLAEVCASVD--TVMFCLSKGLGAPV---GSIL--AGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~-----~~~~~~~~~D--~v~~s~~K~lg~p~---gg~l--~g~~~~i 69 (71)
+++++|.++|++|+++++.|-+ +....+.+. ++..+....| ++..|+||.++.|. |-++ +++++++
T Consensus 196 ~~~~~l~~~a~~~~~~ii~De~--Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~ 273 (404)
T PTZ00376 196 EQWKEIADVMKRKNLIPFFDMA--YQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEA 273 (404)
T ss_pred HHHHHHHHHHHhCCcEEEEehh--hcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHH
Confidence 5789999999999999999965 111111110 1222222222 67789999998773 4332 6777643
No 279
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=96.51 E-value=0.0029 Score=44.96 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCc-EEEEcCCCCCccce--eEEEE
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVD-TVMFCLSKGLGAPV--GSILA 63 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~ 63 (71)
+++++|.++|+++|+++++|.+-. ...+.+. ++..+....+ ++.-|+||.+|.|. -|.++
T Consensus 197 ~~~~~l~~~a~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRlG~~i 262 (412)
T PTZ00433 197 KHVEDIIRLCEELRLPLISDEIYA--GMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRLGWLL 262 (412)
T ss_pred HHHHHHHHHHHHcCCeEEEecccc--ccccCCCCccchhhccCCCceEEEccchhhcCCCCeeEEEEE
Confidence 468899999999999999997721 1111121 2233322222 55679999888883 34444
No 280
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=96.51 E-value=0.0059 Score=43.97 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcCC-cEEEEcCCCCCccce--eEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCASV-DTVMFCLSKGLGAPV--GSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~-D~v~~s~~K~lg~p~--gg~l~g 64 (71)
+++++|.++|+++|++++.|.+ +....+-+ .++..+.... =++.-|+||.++.|. -|.+++
T Consensus 210 ~~l~~i~~~a~~~~i~ii~De~--Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv~ 276 (430)
T PLN00145 210 EHLAKIAETARKLGILVIADEV--YDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIAT 276 (430)
T ss_pred HHHHHHHHHHHHcCCEEEEecc--chhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEEE
Confidence 4689999999999999999977 22222222 2233332211 277789999888884 455543
No 281
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=96.49 E-value=0.005 Score=44.16 Aligned_cols=63 Identities=22% Similarity=0.356 Sum_probs=37.8
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
.+++|.++|++||++++.|=..- .....|. ....+-...|+++| +|.++ .|+|. +++++++++
T Consensus 219 ~l~~l~~lc~~~gillI~DEV~t--g~gr~g~~~a~~~~~~~pDi~~l--sK~l~~G~pig~-v~~~~~i~~ 285 (420)
T TIGR00700 219 FVPALLDWCREHGIVFIADEVQT--GFARTGAMFACEHEGPEPDLITT--AKSLADGLPLSG-VTGRAEIMD 285 (420)
T ss_pred HHHHHHHHHHHcCCEEEEEeccc--CCcccchhHHHhhcCCCCCEEEe--eccccCCcceEE-EEecHHHHh
Confidence 48999999999999999993310 0001121 11222234687764 67655 35554 566777654
No 282
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=96.46 E-value=0.0084 Score=47.79 Aligned_cols=63 Identities=24% Similarity=0.220 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCC------CCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSK------GLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K------~lg~p~gg~l~g~~~~i~ 70 (71)
+++++|++++|++|..++++.-- + +-..-.++.|+ ++|++ ++.+| ++|+|.+|++..+++++.
T Consensus 210 ed~~~i~~~~h~~gal~~~~ad~--~-al~ll~~Pge~--GaDi~-vg~~q~fg~p~g~GGP~aG~~a~~~~l~r 278 (939)
T TIGR00461 210 LDYKQLIDALHSHKSLVSVAADL--M-ALTLLTPPGHY--GADIV-LGSSQRFGVPMGYGGPHAAFFAVKDEYNR 278 (939)
T ss_pred ecHHHHHHHHHHcCCEEEEEech--H-HhCCcCCHHHc--CCcEE-eeCCCccCCCCCCCCCceeeeeecHhhHh
Confidence 57899999999999999994321 1 12234566775 99999 55555 334666788888888764
No 283
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=96.45 E-value=0.0025 Score=46.13 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCcc---ceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~i 69 (71)
++++++.++|++||+.+++|=.+.- .-..|.-. ....-..|++++ .|.+++ |++ .+++++++.
T Consensus 222 ~~l~~lr~lc~~~g~llI~DEv~tG--~GrtG~~~a~~~~gv~PDi~t~--gK~l~gG~~p~~-av~~~~~i~ 289 (422)
T PRK05630 222 ALIEGVRTLCDKHDILLIADEIATG--FGRTGELFATLAAGVTPDIMCV--GKALTGGFMSFA-ATLCTDKVA 289 (422)
T ss_pred HHHHHHHHHHHHcCCEEEEecceeC--CCcCchhhHHHhcCCCCCeeee--echhhcCccccc-eeeccHHHH
Confidence 4689999999999999999943210 00112111 112234688866 687733 554 555565543
No 284
>PRK06917 hypothetical protein; Provisional
Probab=96.41 E-value=0.0064 Score=44.30 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCcc---ceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++|=.+- ..-..|.-. ..+.-..|++++ .|.+++ |+++++ ++++++
T Consensus 221 ~fl~~lr~lc~~~g~llI~DEv~t--GfGRtG~~~a~~~~gv~PDi~~~--gK~l~~G~~Pi~a~~-~~~~i~ 288 (447)
T PRK06917 221 GYYKVIKEICDHYDILFIADEVMT--GLGRTGAMFAMEHWGVEPDIMTL--GKGLGAGYTPIAATV-VSDRVM 288 (447)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--CcCcccchhhHHhcCCCCCEEEe--eehhccCCcceEEEE-EcHHHH
Confidence 468999999999999999993310 000122211 122234688777 676653 866555 455554
No 285
>PRK05839 hypothetical protein; Provisional
Probab=96.41 E-value=0.0042 Score=43.60 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHh-----cCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVC-----ASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~-----~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++|+++++|=+ +......+ .++.... ...| ++.-|+||.++.|. .|.+++++++++
T Consensus 175 ~~l~~i~~~~~~~~~~ii~DE~--Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~~~ 252 (374)
T PRK05839 175 EELIEWVKLALKHDFILINDEC--YSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASILK 252 (374)
T ss_pred HHHHHHHHHHHHcCCEEEeccc--hhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHHHH
Confidence 4688999999999999999955 11111111 1222111 0112 67789999878773 677888888765
No 286
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=96.40 E-value=0.0052 Score=45.20 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCc---cceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLG---APVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~~~~ 68 (71)
+.++++.++|++||+.+++| |.+- .|.- ...+--..|++++ .|.++ .|+++++. ++++
T Consensus 258 ~fl~~lr~lc~~~gillI~DEV~TGfGR------tG~~~a~e~~gv~PDiv~~--gKgl~gG~~Plaav~~-~~ei 324 (472)
T PRK08742 258 AYLRRARELCDAHGAFLIADEIATGFGR------TGTLFACEQAGVMPDLLCL--SKGLTGGFLPLSAVLA-TQQL 324 (472)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhCCCC------CccchHHHhcCCCCCEEEE--cccccCCCCCcceeec-cHHH
Confidence 46899999999999999999 4411 1111 1122234799998 46553 48776655 5444
No 287
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=96.40 E-value=0.0065 Score=44.45 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCcc---ceeEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLGA---PVGSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg~---p~gg~l~g 64 (71)
+.++++.++|++||+.+++|=.+-- .-..|.- ...+.-..|++++ .|.+++ |+++++..
T Consensus 249 ~yl~~lr~lc~~~g~llI~DEV~tG--~GRtG~~fa~e~~gv~PDiv~~--gKgl~gG~~P~~av~~~ 312 (459)
T PRK06082 249 AYWKRVREICDKHNVLLIIDEIPNG--MGRTGEWFTHQAYGIEPDILCI--GKGLGGGLVPIAAMITK 312 (459)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhC--CCccchhhHhHhhCCCCCEEEe--cccccCCCCcceEEEEc
Confidence 4589999999999999999922100 0001211 1122235788885 676653 77766654
No 288
>PRK07678 aminotransferase; Validated
Probab=96.39 E-value=0.01 Score=43.24 Aligned_cols=60 Identities=22% Similarity=0.346 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCHHHHhcCCcEEEEcCCCCCc---cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPLAEVCASVDTVMFCLSKGLG---APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++| |. |.-. ..+ ...+--..|++++ .|.+| .|++++++ +++++
T Consensus 234 ~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~---~~~--~~~~gv~PDivt~--gK~lggG~~Pi~av~~-~~~i~ 301 (451)
T PRK07678 234 DYMKAVKEICQKHGALLISDEVICGFGRTGK---AFG--FMNYGVKPDIITM--AKGITSAYLPLSATAV-KKEIY 301 (451)
T ss_pred HHHHHHHHHHHHcCCEEEEeehhhcCCcCch---hHH--HHhcCCCCCEEEe--ecccccCCcceeEEEE-cHHHH
Confidence 46899999999999999999 44 2110 001 1122234799988 56554 48775554 55543
No 289
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=96.39 E-value=0.0062 Score=44.24 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=38.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEEcCCCCCc--cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i 69 (71)
++++++.++|++||+.+++|=..- .....|. ....+.-..|+++|| |.++ .|+| .++++++++
T Consensus 242 ~~l~~l~~l~~~~g~lli~DEv~t--G~gr~G~~~a~~~~gv~pDivt~~--K~l~~G~p~g-av~~~~~i~ 308 (441)
T PRK05769 242 NFFKELRKLADKYGILLIDDEVQT--GMGRTGKMFAIEHFGVEPDIITLA--KAIAGGLPLG-AVIGRAELM 308 (441)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--CCCcccceehhhccCCCCCEEEEc--ccccCCcccE-EEEEehhhh
Confidence 358999999999999999994321 0001221 112222235898876 6554 4555 466777664
No 290
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=96.38 E-value=0.0057 Score=44.70 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEEcCCCCCc---cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMFCLSKGLG---APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++|=.+-- .-..|. ....+--..|++++ .|.+| .|+|+++ ++++++
T Consensus 245 ~yl~~l~~lc~~~g~llI~DEV~tG--~GRtG~~~a~e~~gv~PDivt~--gK~lg~G~~Pigavv-~~~~i~ 312 (442)
T TIGR03372 245 GYLPAVRALCDEFGALLILDEVQTG--MGRTGKMFACEHEGVQPDILCL--AKALGGGVMPIGATI-ATEAVF 312 (442)
T ss_pred HHHHHHHHHHHHcCCEEEEeecccC--CCccccchhhhhcCCCCCeeee--hhhhcCCcccceEEE-ecHHHH
Confidence 3589999999999999999933210 000121 11222234688875 67776 4888766 456654
No 291
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=96.34 E-value=0.0063 Score=44.60 Aligned_cols=58 Identities=19% Similarity=0.238 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g 64 (71)
++++++.++|++||+.+++| |. |.-.- .....+--..|+++++-.=+.|.|+++++..
T Consensus 252 ~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~-----~a~e~~gv~PDiv~~gKglggG~PlsAv~~~ 314 (464)
T PRK06938 252 EWLRGLRRITEEAGIPLIVDEIQSGFGRTGKM-----FAFEHAGIIPDVVVLSKAIGGSLPLAVVVYR 314 (464)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCcCcHH-----HHHHhcCCCCCEEEeeccccCCCceEEEeeh
Confidence 46899999999999999999 44 21110 0011122346999996444445688877754
No 292
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=96.32 E-value=0.0076 Score=43.71 Aligned_cols=63 Identities=22% Similarity=0.401 Sum_probs=37.6
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
.+++|.++|++||++++.|-.. ......|. +...+....|+++| +|.++ .|+|. +++++++++
T Consensus 241 ~l~~l~~l~~~~gillI~DEV~--tg~gr~g~~~a~~~~~v~pDi~t~--sK~l~~G~pig~-v~~~~~i~~ 307 (451)
T PRK06918 241 FVQEVRNICSEHGILFVADEIQ--TGFARTGKYFAIEHFDVVPDLITV--SKSLGAGVPISG-VIGRKEIMD 307 (451)
T ss_pred HHHHHHHHHHHcCCEEEEeccc--cCcCccCceehhHhcCCCCCEEee--ehhhcCCCccEE-EEEcHHHHh
Confidence 5899999999999999999331 00011221 22333234686654 66554 35554 556777654
No 293
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=96.32 E-value=0.0069 Score=43.13 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=39.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCc-EEEEcCCCCCccce--eEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVD-TVMFCLSKGLGAPV--GSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~g 64 (71)
+++++|.++|++|+++++.|-+ +....+.+. ++..+...-. ++.-|+||.++.|. -|.+++
T Consensus 190 ~~~~~l~~~a~~~~~~ii~De~--Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~ 256 (409)
T PLN00143 190 EHLNKIAETARKLGILVIADEV--YGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVT 256 (409)
T ss_pred HHHHHHHHHHHHcCCeEEEEcc--ccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEe
Confidence 4689999999999999999976 222122222 2233321111 67789999878884 456665
No 294
>PLN02368 alanine transaminase
Probab=96.31 E-value=0.0087 Score=43.13 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC----CCHHHHhc--------CCc-EEEEcCCCCC-ccce--eEEEE--
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG----LPLAEVCA--------SVD-TVMFCLSKGL-GAPV--GSILA-- 63 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~----~~~~~~~~--------~~D-~v~~s~~K~l-g~p~--gg~l~-- 63 (71)
+++++|.++|++|+++++.|-+ +....+.+ .++.++.. .-. ++.-|+||.+ +.|. .|.++
T Consensus 230 e~l~~l~~~a~~~~~~II~DE~--Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~ 307 (407)
T PLN02368 230 ANLREILKFCYQERLVLLGDEV--YQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMT 307 (407)
T ss_pred HHHHHHHHHHHHcCCEEEEEcc--ccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEe
Confidence 5789999999999999999965 22222212 13333321 112 5567999987 5663 45555
Q ss_pred -ecccccc
Q psy15462 64 -GPEEFIQ 70 (71)
Q Consensus 64 -g~~~~i~ 70 (71)
+++++++
T Consensus 308 ~~~~~li~ 315 (407)
T PLN02368 308 NIPPKTVE 315 (407)
T ss_pred CCCHHHHH
Confidence 5777765
No 295
>PLN00144 acetylornithine transaminase
Probab=96.30 E-value=0.0094 Score=42.37 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=37.7
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-hcCCcEEEEcCCCCC--ccceeEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-CASVDTVMFCLSKGL--GAPVGSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-~~~~D~v~~s~~K~l--g~p~gg~l~g~~~~i~ 70 (71)
+++++.++|++||+++++|-..- .....|..+. ++ .-.-|+++| +|.+ |.|+| .+++++++++
T Consensus 189 ~~~~l~~l~~~~g~llI~DEv~t--g~gr~g~~~~~~~~~~~PDi~t~--sK~l~~G~pig-~v~~~~~~~~ 255 (382)
T PLN00144 189 FLQGLRALCDEAGALLVFDEVQC--GLGRTGYLWAHEAYGVEPDIMTL--AKPLAGGLPIG-AVLVTEKVAS 255 (382)
T ss_pred HHHHHHHHHHHcCCEEEEechhh--CCCccchHhhhhhcCCCCCEEEe--cccccCCcceE-EEEEcHHHHh
Confidence 48999999999999999994421 0011232221 22 223576666 5655 45654 5566676654
No 296
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=96.25 E-value=0.007 Score=43.14 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+++++|=+.. .....|... ....-..|+++ ++|.++ .|+| .+++++++++
T Consensus 204 ~~l~~l~~l~~~~~~llI~DEv~t--G~gr~G~~~~~~~~~v~pDi~t--~sK~l~gG~~ig-~~~~~~~~~~ 271 (406)
T PRK12381 204 AFLQGLRELCDRHNALLIFDEVQT--GVGRTGELYAYMHYGVTPDVLT--TAKALGGGFPIG-AMLTTEKCAS 271 (406)
T ss_pred HHHHHHHHHHHHcCCEEEEcchhh--CCCCCcchhhhHhhCCCCCEEE--ehhhhhCCCceE-EEEEcHHHHh
Confidence 568999999999999999995421 011122221 12222357754 467763 3444 5556777654
No 297
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=96.20 E-value=0.0073 Score=41.74 Aligned_cols=65 Identities=14% Similarity=0.033 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++|.++|+++++++++|-+-. ... ...++..+. ..| ++.-|+||.+|.|. -|.+++++++++
T Consensus 144 ~~l~~l~~~~~~~~~~iI~DE~y~--~~~-~~~s~~~~~-~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~ 212 (330)
T PRK05664 144 ARLLAWHARLAARGGWLVVDEAFM--DNT-PQHSLAACA-HRPGLIVLRSFGKFFGLAGARLGFVLAEPALLR 212 (330)
T ss_pred HHHHHHHHHHHhcCCEEEEECCcc--cCC-Ccccccccc-cCCCEEEEeeccccccCCCcceEEEEeCHHHHH
Confidence 468899999999999999996521 000 112333332 223 77889999998784 478888888765
No 298
>PLN02187 rooty/superroot1
Probab=96.18 E-value=0.0097 Score=43.39 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCc-EEEEcCCCCCccce--eEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVD-TVMFCLSKGLGAPV--GSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~g 64 (71)
+++++|.++|++||++++.|-+ +....+.+. ++.++..... ++.-|++|.++.|. -|.+++
T Consensus 224 e~l~~i~~~a~~~~i~iI~DE~--Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v~ 290 (462)
T PLN02187 224 DHLKKVAETARKLGIMVISDEV--YDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIAL 290 (462)
T ss_pred HHHHHHHHHHHHCCCEEEEecc--ccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEEe
Confidence 4689999999999999999976 222222222 3334432222 45569999888884 456655
No 299
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=96.17 E-value=0.011 Score=42.89 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+++++|.++|++||+.+++| |.+- .|.-. ..+.-..|+++++ |.++ .|+| .+++++++++
T Consensus 240 ~yl~~lr~lc~~~gillI~DEV~tGfgR------tG~~fa~~~~gv~PDiv~~g--K~l~~G~Pi~-av~~~~~i~~ 307 (443)
T PRK06058 240 GFLPALLEWCRENGVVFIADEVQTGFAR------TGAWFACEHEGIVPDLITTA--KGIAGGLPLS-AVTGRAEIMD 307 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCc------ChhhhHHHhcCCCCCEEEEc--ccccCCCccE-EEEEcHHHHh
Confidence 46899999999999999999 3310 11111 1122235999985 7554 4555 4555666653
No 300
>PLN02397 aspartate transaminase
Probab=96.17 E-value=0.007 Score=43.45 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC--C---CHHHHhcCCc--EEEEcCCCCCccce---eEEE--Eecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG--L---PLAEVCASVD--TVMFCLSKGLGAPV---GSIL--AGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~---~~~~~~~~~D--~v~~s~~K~lg~p~---gg~l--~g~~~~ 68 (71)
+++++|.++|++||++++.|=+ +....+-+ . ++..+...-+ ++..|+||.++.|. |-++ ++++++
T Consensus 214 e~l~~i~~~a~~~~~~vI~De~--Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~ 290 (423)
T PLN02397 214 EQWEQISDLIKSKNHLPFFDSA--YQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADV 290 (423)
T ss_pred HHHHHHHHHHHhCCcEEEEecc--cCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHH
Confidence 5789999999999999999955 11111111 1 1222222223 56779999988773 4443 455543
No 301
>PLN02231 alanine transaminase
Probab=96.16 E-value=0.015 Score=43.47 Aligned_cols=67 Identities=16% Similarity=0.349 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhC-CC---CHHHHhc--C-----CcEEEE-cCCCCC-ccc--eeEEEEe--
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYL-GL---PLAEVCA--S-----VDTVMF-CLSKGL-GAP--VGSILAG-- 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~-~~---~~~~~~~--~-----~D~v~~-s~~K~l-g~p--~gg~l~g-- 64 (71)
+++++|.++|+++|++++.|=+ +....+. +. ++.++.. + ..++++ |+||.+ |.| .+|.++.
T Consensus 291 e~l~~Iv~~a~~~~l~lI~DEv--Y~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~ 368 (534)
T PLN02231 291 ENQRDIVEFCKQEGLVLLADEV--YQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTG 368 (534)
T ss_pred HHHHHHHHHHHHcCCEEEEEcc--chhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEec
Confidence 5789999999999999999955 2222221 22 3444421 1 125655 999965 545 3565543
Q ss_pred -cccccc
Q psy15462 65 -PEEFIQ 70 (71)
Q Consensus 65 -~~~~i~ 70 (71)
++++++
T Consensus 369 ~~~~l~~ 375 (534)
T PLN02231 369 FTSDVRE 375 (534)
T ss_pred CCHHHHH
Confidence 566654
No 302
>PRK07046 aminotransferase; Validated
Probab=96.16 E-value=0.0077 Score=44.03 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
+.++++.++|++||+.+++|=.+-+. ...|.....+--..|+++++-.=+.|.|+| ++++++++++
T Consensus 239 ~fl~~lr~lc~~~g~llI~DEV~tfr--~g~Gg~~~~~gv~PDi~t~gK~lggG~Pi~-av~g~~~i~~ 304 (453)
T PRK07046 239 GFHEALRELTRRYGTLLVIDETHTIS--SGPGGYTRAHGLEPDFLVVGKPIAGGVPCA-VYGFSAELAE 304 (453)
T ss_pred HHHHHHHHHHHHhCCEEEEEccccCc--cCCcchhHHhCCCccceeehhhhcCCCcce-eeeehHHHHH
Confidence 36899999999999999999443211 012322222333469998743333456755 6677777653
No 303
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=96.13 E-value=0.0097 Score=42.87 Aligned_cols=64 Identities=22% Similarity=0.381 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+.+++|.++|++||+++++|=..- .....|.. ...+....|+++ .+|.++ .|+| .+++++++++
T Consensus 219 ~~l~~l~~lc~~~g~llI~DEv~t--g~gr~g~~~~~~~~~~~pDiv~--~sK~l~~G~pig-av~~~~~i~~ 286 (421)
T PRK06777 219 EFMSALRTLCDEHGILLIADEVQT--GFARTGKLFAMEYYDVKPDLIT--MAKSLGGGMPIS-AVVGRAEVMD 286 (421)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--CCccCCchhhhhhcCCCCCEEe--eehhhcCCCceE-EEEEcHHHHh
Confidence 468999999999999999994311 00112221 122223468775 577665 4555 5566777654
No 304
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=96.13 E-value=0.0083 Score=43.13 Aligned_cols=64 Identities=19% Similarity=0.351 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
++++++.++|++||+.+++|=..- .....|... ..+---.|++ +++|.++ .|+| .+++++++++
T Consensus 228 ~~l~~l~~lc~~~g~llI~DEv~t--G~gr~G~~~~~~~~gv~pDi~--t~sK~lg~G~pig-av~~~~~i~~ 295 (433)
T PRK08117 228 SFLKKLREICDRHGILLIFDEVQT--GFGRTGEWFAAQTFGVVPDIM--TIAKGIASGLPLS-AVVASKELME 295 (433)
T ss_pred HHHHHHHHHHHHcCCEEEEecchh--ccCccccchhHhhcCCCCCEe--ehhhhccCCCcce-eEEEcHHHHh
Confidence 458999999999999999993210 001122222 1221235765 5567665 3556 5666776654
No 305
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=96.13 E-value=0.011 Score=46.39 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc-cceeEEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG-APVGSILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg-~p~gg~l~g~ 65 (71)
+.++++.++|++||++++.| |. | .|.-. ..+----|+++++--=..| .|++++++.+
T Consensus 606 ~yl~~lr~lc~~~gilLI~DEV~TGfGR-------tG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~ 670 (817)
T PLN02974 606 LFQRALVQVCRSRKIPVIFDEVFTGLWR-------LGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATE 670 (817)
T ss_pred HHHHHHHHHHHHhCCEEEEeecccCCCc-------ccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcH
Confidence 46899999999999999999 54 3 22221 1222346999887555445 5888777653
No 306
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=96.12 E-value=0.008 Score=43.87 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=41.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC---HHHHhc--------CCc--EEEEcCCCCCccce--eEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP---LAEVCA--------SVD--TVMFCLSKGLGAPV--GSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~---~~~~~~--------~~D--~v~~s~~K~lg~p~--gg~l~g~~ 66 (71)
+.+++|.++|++|+++++.|=+- ....+.+.+ +..+.. ..+ ++..|+||.++.|. -|.+++++
T Consensus 211 e~l~~ll~~a~~~~~~iI~DE~Y--~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~ 288 (468)
T PLN02450 211 TELNLLVDFITAKNIHLISDEIY--SGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSND 288 (468)
T ss_pred HHHHHHHHHHHHCCcEEEEEccc--cccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECC
Confidence 46889999999999999999541 111111212 222211 112 67889999988773 56777775
Q ss_pred cc
Q psy15462 67 EF 68 (71)
Q Consensus 67 ~~ 68 (71)
+.
T Consensus 289 ~~ 290 (468)
T PLN02450 289 EM 290 (468)
T ss_pred HH
Confidence 43
No 307
>PRK08297 L-lysine aminotransferase; Provisional
Probab=96.10 E-value=0.0065 Score=44.23 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCccceeEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLGAPVGSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~ 66 (71)
++++++.++|++||+.+++|=..-- .-..|.-. ..+--..|++++ .|.+ |.++++++++
T Consensus 246 ~yl~~lr~lc~~~g~llI~DEV~tG--fGRtG~~~a~~~~gv~PDiv~~--gK~l--~~~a~l~~~~ 306 (443)
T PRK08297 246 EFFAAMRELCDEHDALLIFDEVQTG--VGLTGTAWAYQQLGVRPDIVAF--GKKT--QVCGIMAGRR 306 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEechhhc--cCccchHHHHHhcCCCCCEEEe--cccc--cccceecchH
Confidence 4789999999999999999932100 00011111 112235799986 6755 6788888865
No 308
>PRK07483 hypothetical protein; Provisional
Probab=96.07 E-value=0.0083 Score=43.66 Aligned_cols=59 Identities=24% Similarity=0.455 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc-cceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG-APVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg-~p~gg~l~g~~~~ 68 (71)
+.++++.++|++||+.+++| |. |. |.-. ..+--..|+++++-.=..| .|++++++ ++++
T Consensus 221 ~fl~~lr~lc~~~gillI~DEV~tGfGRt-------G~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~-~~~i 287 (443)
T PRK07483 221 GYFKRIREVCDRYGVLLILDEVMCGMGRT-------GTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLA-SDRI 287 (443)
T ss_pred HHHHHHHHHHHHhCCEEEEecceeCcccC-------cHHHHHhhcCCCCCeeeehhhhccCccccEEEEE-cHHH
Confidence 46899999999999999999 43 21 1111 1222346999884332223 48776665 4444
No 309
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=96.01 E-value=0.011 Score=40.61 Aligned_cols=63 Identities=17% Similarity=0.078 Sum_probs=39.5
Q ss_pred HHHHHHHHHhc-CCcEEEecccchHHhhhCCCCHHHHh--cCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 4 DPQLKARCQEH-NIPVHMDGARVFNAASYLGLPLAEVC--ASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 4 l~~i~~~a~~~-gi~l~~DgAr~~~~~~~~~~~~~~~~--~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
.+++.++++.+ ++++++|-+-.- +.+.+...+. ..-.++..|++|.+|.|. .|.+++++++++
T Consensus 163 ~~~~~~l~~~~~~~~livDe~y~~----~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~ 230 (353)
T PRK05387 163 LAEIERILAANPDSVVVIDEAYVD----FGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIE 230 (353)
T ss_pred HHHHHHHHHhCCCcEEEEeCcccc----cCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHH
Confidence 45566666554 999999976311 1122222222 123588889999888673 477888888765
No 310
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=95.99 E-value=0.0092 Score=43.15 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC---H-HH-HhcCCcEEEEcCCCCCccceeEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP---L-AE-VCASVDTVMFCLSKGLGAPVGSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~---~-~~-~~~~~D~v~~s~~K~lg~p~gg~l~g~~ 66 (71)
+++++|.++|++||+.+++|-.+-- .|.+ . .+ +.-..|+++++ |.+ |.++++.+++
T Consensus 239 ~~l~~l~~lc~~~g~llI~DEV~tG-----~GrtG~~~a~~~~gv~PDi~~~g--K~~--~~~g~~~~~~ 299 (431)
T TIGR03251 239 EFLRAMRALCDEHDALLIFDEVQTG-----VGLTGTAWAYQQLGVQPDIVAFG--KKT--QVCGIMAGRR 299 (431)
T ss_pred HHHHHHHHHHHHcCCEEEEecchhc-----cCccchHHHHHhcCCCCCEEEec--ccC--ccceEEecch
Confidence 4789999999999999999955310 1222 1 12 22357999874 533 7788888765
No 311
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=95.95 E-value=0.012 Score=40.69 Aligned_cols=65 Identities=17% Similarity=0.070 Sum_probs=38.6
Q ss_pred HHHHHHHHHh--cCCcEEEecccchHHhhhCCC--CHHHHhc--CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 4 DPQLKARCQE--HNIPVHMDGARVFNAASYLGL--PLAEVCA--SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 4 l~~i~~~a~~--~gi~l~~DgAr~~~~~~~~~~--~~~~~~~--~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
.+++.++++. +|+++++|-+-. .....+. +...... .-.++.-|++|.+|.|. .|.+++++++++
T Consensus 170 ~~~l~~~~~~~~~~~~ii~De~y~--~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~ 242 (359)
T PRK03158 170 HEELLSFLESVPSHVLVVLDEAYY--EYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIE 242 (359)
T ss_pred HHHHHHHHHhCCCCcEEEEECchH--hhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHH
Confidence 3455555554 699999997721 1111111 1112211 23466679999988774 478888888775
No 312
>PTZ00377 alanine aminotransferase; Provisional
Probab=95.93 E-value=0.02 Score=41.76 Aligned_cols=67 Identities=24% Similarity=0.356 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC-C---CHHHH----hcCC----cEE-EEcCCCCC-ccc--eeEEEE--
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG-L---PLAEV----CASV----DTV-MFCLSKGL-GAP--VGSILA-- 63 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~-~---~~~~~----~~~~----D~v-~~s~~K~l-g~p--~gg~l~-- 63 (71)
+++++|.++|++|+++++.|-+ +....+.+ . ++..+ .... .++ .-|+||.+ +.| ..|.++
T Consensus 238 e~~~~i~~~a~~~~~~iI~De~--Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~ 315 (481)
T PTZ00377 238 DVMEEIIKFCYEKGIVLMADEV--YQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELT 315 (481)
T ss_pred HHHHHHHHHHHHCCCEEEEehh--hHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEe
Confidence 4689999999999999999966 22222211 1 22222 1111 244 45899964 545 355555
Q ss_pred -ecccccc
Q psy15462 64 -GPEEFIQ 70 (71)
Q Consensus 64 -g~~~~i~ 70 (71)
+++++++
T Consensus 316 ~~p~~li~ 323 (481)
T PTZ00377 316 NIPPEVRE 323 (481)
T ss_pred CCCHHHHH
Confidence 3787765
No 313
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=95.92 E-value=0.01 Score=42.92 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+.+++|.++|++||+++++|-..- .....|.. ....-...|+++| +|.++ .|+| .+++++++++
T Consensus 219 ~~l~~l~~l~~~~g~llI~DEv~t--G~gr~G~~~a~~~~gv~pDi~tl--sK~l~~G~pig-av~~~~~i~~ 286 (425)
T PRK07495 219 AFMKALRELCDQHGILLIADEVQT--GFARTGKLFAMEHHEVAADLTTM--AKGLAGGFPLA-AVTGRAEIMD 286 (425)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--cCCcCCCceeecccCCCCCEEee--hhhhcCCccce-EEEEcHHHHh
Confidence 468999999999999999995421 01112211 1112124577766 56554 4655 5566777654
No 314
>PRK06855 aminotransferase; Validated
Probab=95.90 E-value=0.033 Score=40.09 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=40.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcC-CcEEEEcCCCCCccce--eEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCAS-VDTVMFCLSKGLGAPV--GSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~-~D~v~~s~~K~lg~p~--gg~l~g 64 (71)
+++++|.++|++||++++.|-+ +....+.+ .++.++... --++.-|+||.++.|. .|.++.
T Consensus 191 ~~~~~l~~~a~~~~~~II~De~--Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~ 257 (433)
T PRK06855 191 EILREIVDIAREYDLFIICDEI--YNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEV 257 (433)
T ss_pred HHHHHHHHHHHHcCCEEEEecc--ccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEE
Confidence 4689999999999999999965 22222222 234555322 1277789999988783 566654
No 315
>PRK09105 putative aminotransferase; Provisional
Probab=95.89 E-value=0.0098 Score=41.89 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh-cCCcE-EEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC-ASVDT-VMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~-~~~D~-v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++++.+.+ ++++++++|-+-.- .. ...+..++. ..-++ +..|++|.+|.|. -|.+++++++++
T Consensus 185 ~~l~~l~~~~-~~~~~lIvDEaY~~--f~-~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~ 253 (370)
T PRK09105 185 ADIEWLLANK-PAGSVLLVDEAYIH--FS-DAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLA 253 (370)
T ss_pred HHHHHHHHhC-CCCcEEEEECchHH--hc-cCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHH
Confidence 3456666654 45899999987311 11 122333442 34454 4459999998885 578888888775
No 316
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=95.86 E-value=0.013 Score=42.59 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHHhcC------Cc--EEEEcCCCCCccce--eEEEEe-ccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEVCAS------VD--TVMFCLSKGLGAPV--GSILAG-PEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~------~D--~v~~s~~K~lg~p~--gg~l~g-~~~ 67 (71)
+.++++.++|++|++.++.|-+- ....+.+ .++.++... -+ .+..|+||.+|.|. -|.+++ +++
T Consensus 220 e~l~~l~~~~~~~~i~lI~DEiY--a~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~ 297 (447)
T PLN02607 220 SVLEDILDFVVRKNIHLVSDEIY--SGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDK 297 (447)
T ss_pred HHHHHHHHHHHHCCCEEEEeccc--cccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHH
Confidence 46899999999999999999541 1111111 123333211 12 56789999998884 456665 555
Q ss_pred cc
Q psy15462 68 FI 69 (71)
Q Consensus 68 ~i 69 (71)
++
T Consensus 298 l~ 299 (447)
T PLN02607 298 VV 299 (447)
T ss_pred HH
Confidence 53
No 317
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=95.85 E-value=0.016 Score=42.48 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc-cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG-APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg-~p~gg~l~g~~~~i 69 (71)
++++++.++|++||+.+++| |. | .|.-. ..+--..|+++++-.=..| .|+++++ +++++.
T Consensus 236 ~yl~~lr~lc~~~g~llI~DEV~TGfGR-------tG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~-~~~ei~ 303 (466)
T PRK07030 236 VYLKLLREACDRYGVHLIHDEIAVGFGR-------TGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVL-TTDTVY 303 (466)
T ss_pred HHHHHHHHHHHHcCCEEEEeehhhCcCc-------cccchHHHhcCCCCCEEeeehhccCCcccceEEE-ecHHHH
Confidence 46899999999999999999 43 2 11111 1122347999994332333 4776555 455543
No 318
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=95.83 E-value=0.014 Score=42.65 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=38.5
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~ 67 (71)
++++++.++|++||+.+++| |. |.-.-. ....+.-..|+++++-.=+.|.|++++ +++++
T Consensus 246 ~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~-----a~~~~gv~PDivt~gK~l~gG~Pi~av-~~~~~ 310 (459)
T PRK06931 246 EWLQKIREVTQKHGILLIVDEVQAGFARTGKMF-----AFEHAGIEPDIIVMSKAVGGGLPLAVL-GIKKE 310 (459)
T ss_pred HHHHHHHHHHHHcCCEEEEecchhcCCcCchHH-----HhhhcCCCCCEEEecccccCCcceeee-eeHHH
Confidence 46899999999999999999 44 321100 011222347999996554556788764 45544
No 319
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=95.83 E-value=0.015 Score=40.31 Aligned_cols=65 Identities=18% Similarity=0.030 Sum_probs=37.6
Q ss_pred HHHHHHHHHh--cCCcEEEecccchHHhhhCC---CCHHHHhcCC-cEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 4 DPQLKARCQE--HNIPVHMDGARVFNAASYLG---LPLAEVCASV-DTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 4 l~~i~~~a~~--~gi~l~~DgAr~~~~~~~~~---~~~~~~~~~~-D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
.+++.++++. +|+++++|.+... ....+ .++.-+...- .++..|++|.+|.|. .|.+++++++++
T Consensus 173 ~~~l~~l~~~~~~~~~li~De~y~~--~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~ 245 (367)
T PRK02731 173 AEEVERFLAGVPPDVLVVLDEAYAE--YVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIID 245 (367)
T ss_pred HHHHHHHHHhCCCCcEEEEECcHHH--hccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHH
Confidence 4455555554 4999999987311 11111 1121111122 355669999877663 478899988775
No 320
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=95.80 E-value=0.0075 Score=42.29 Aligned_cols=65 Identities=12% Similarity=-0.030 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCC--cEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASV--DTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~--D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++.++.+.|+ +++++++|-+- .... .+.+...+.... -++..|++|.+|.|. -|.+++++++++
T Consensus 175 ~~l~~l~~~~~-~~~~lI~DE~y--~~~~-~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~ 243 (369)
T PRK08153 175 ADIVAFIEALP-ETTLLVLDEAY--CETA-PAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIK 243 (369)
T ss_pred HHHHHHHHhCC-CCcEEEEeCch--hhhc-CcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHH
Confidence 35667777666 48999999762 1111 111222221111 277889999988784 478888888765
No 321
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=95.77 E-value=0.024 Score=39.39 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=43.2
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCC--cEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASV--DTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~--D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+.+++.+++++++..+++|.+-. . ..+.+........ -++.-|+||.+|.|. -|.+++++++++
T Consensus 166 ~~~~l~~l~~~~~~~~ivDe~y~--~--~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~ 233 (351)
T PRK14807 166 EREDIIKIIEKSRGIVVVDEAYF--E--FYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILK 233 (351)
T ss_pred CHHHHHHHHHhCCCEEEEeCcch--h--hcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHH
Confidence 45788888988888899998731 1 1233332222222 377789999988773 578888888765
No 322
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=95.74 E-value=0.0083 Score=43.82 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHh--cCCcEEEecccchHHhhhCCCC-----HHHHhcCCcEEEEcCCCCCcc---ceeEEEEeccccccC
Q psy15462 2 SIDPQLKARCQE--HNIPVHMDGARVFNAASYLGLP-----LAEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQK 71 (71)
Q Consensus 2 ~~l~~i~~~a~~--~gi~l~~DgAr~~~~~~~~~~~-----~~~~~~~~D~v~~s~~K~lg~---p~gg~l~g~~~~i~~ 71 (71)
++++++.++.|+ -++.++||.- ||.= |.+ -++|++.=|+-|+.|+ |.||-++|++|+|++
T Consensus 175 ~~I~~~i~~vk~~~p~~iifVDNC--------YGEFvE~~EP~~--vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~ 244 (403)
T PF06838_consen 175 EEIKEIIKFVKEINPDVIIFVDNC--------YGEFVETQEPTE--VGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVER 244 (403)
T ss_dssp HHHHHHHHHHHHH-TTSEEEEE-T--------TTTTTSSS-GGG--GT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHH
T ss_pred HHHHHHHHHHHhhCCCeEEEEeCC--------cceeccccCccc--cchhheeccceeCCCCCccCcCCEEechHHHHHH
Confidence 467777777776 5679999976 5532 233 5999999999998886 569999999999974
No 323
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=95.69 E-value=0.01 Score=41.21 Aligned_cols=65 Identities=22% Similarity=0.166 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCC-c-EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASV-D-TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~-D-~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++++++.|++ ++++++|-+- .... ...+........ . ++.-|++|.+|.|. -|.+++++++++
T Consensus 174 ~~~~~l~~~~~~-~~~iI~De~y--~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~ 242 (357)
T PRK14809 174 DEVEALAERTDE-ETLVVVDEAY--GEFA-ERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWAD 242 (357)
T ss_pred HHHHHHHHhCcc-CcEEEEechh--hhcc-CCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHH
Confidence 356777777764 7899999762 1111 122222222222 2 45569999988774 578888888765
No 324
>PRK06105 aminotransferase; Provisional
Probab=95.66 E-value=0.024 Score=41.51 Aligned_cols=63 Identities=17% Similarity=0.136 Sum_probs=36.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCc---cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLG---APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++|=.+-- .-..|.- ...+--.-|++++ .|.++ .|+++++ ++++++
T Consensus 239 ~yl~~lr~lc~~~~~llI~DEv~tG--~GRtG~~f~~~~~~v~PDi~~~--gK~lggG~~P~~av~-~~~~i~ 306 (460)
T PRK06105 239 TYWEKIQAVLRKYDILLVADEVICG--FGRTGNMFGCETFGIKPDILVM--SKQLSSSYQPLSAVL-MNEKVY 306 (460)
T ss_pred HHHHHHHHHHHHcCCeEEEeccccC--CCcCchhhhHHhcCCCCCeeee--ecccccCcccceEEE-EcHHHH
Confidence 4689999999999999999933100 0001111 1112224688876 46554 3766554 555543
No 325
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=95.63 E-value=0.014 Score=40.70 Aligned_cols=66 Identities=15% Similarity=-0.036 Sum_probs=40.0
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCC-CCHHHHhc-CCcE-EEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLG-LPLAEVCA-SVDT-VMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~-~~~~~~~~-~~D~-v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+.+++.++++..++++++|-+... ....+ .+..++.. .-++ +.-|++|.+|.|. -|.+++++++++
T Consensus 178 ~~~~l~~l~~~~~~~lI~DE~y~~--~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~ 248 (368)
T PRK03317 178 PLDDVEAILDAAPGIVVVDEAYAE--FRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVD 248 (368)
T ss_pred CHHHHHHHHHHCCceEEEeCCchh--hcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHH
Confidence 356777777777899999966211 11112 12233322 2244 4459999888773 267778888765
No 326
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=95.58 E-value=0.021 Score=40.96 Aligned_cols=64 Identities=23% Similarity=0.391 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCCc--cceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i~ 70 (71)
+.+++|.++|++||++++.|-..- .....|.. ......-.|+.+| +|.++ .| -|.+++++++++
T Consensus 220 ~~~~~l~~l~~~~~~~lI~Dev~~--g~g~~g~~~~~~~~~~~pdi~s~--sK~l~~G~r-ig~v~~~~~~~~ 287 (425)
T PRK08088 220 AFMQRLRALCDEHGIMLIADEVQT--GAGRTGTLFAMEQMGVAADLTTF--AKSIAGGFP-LAGVTGRAEVMD 287 (425)
T ss_pred HHHHHHHHHHHHcCCEEEEecccc--CCCcCcchhHHhhcCCCCCEEEE--eccccCCCc-ceeeEecHHHHh
Confidence 358999999999999999995421 01111211 1122223566554 77665 23 346677777764
No 327
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=95.54 E-value=0.018 Score=42.08 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc-cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG-APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg-~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++|=.+- ..-..|.-. ..+.-..|+++++-.=..| .|+++++. ++++.
T Consensus 245 ~fl~~lr~lc~~~g~llI~DEV~T--G~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~-~~ei~ 312 (460)
T PRK06916 245 GYLKGLRNLCTKYNVLFITDEVAT--GFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVT-TDEIY 312 (460)
T ss_pred HHHHHHHHHHHHcCCEEEeechhh--CCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeee-cHHHH
Confidence 468999999999999999992210 000022111 1222346998874322223 47765554 55543
No 328
>PRK07908 hypothetical protein; Provisional
Probab=95.49 E-value=0.029 Score=38.78 Aligned_cols=62 Identities=19% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEE-cCCCCCccce--eEEEEecccccc
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMF-CLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~-s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
.++|.++|+ ++.++++|.+-.- .. .+. ++.+. ..-+++++ |+||.++.|. .|.+++++++++
T Consensus 158 ~~~l~~l~~-~~~~iIvDe~y~~--~~-~~~~~~l~~~-~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~ 224 (349)
T PRK07908 158 AEQLLALRR-PGRILVVDEAFAD--AV-PGEPESLAGD-DLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLA 224 (349)
T ss_pred HHHHHHHHh-cCCEEEEECcchh--hc-cCCccccccc-cCCCEEEEeecccccCCccceeeeeecCHHHHH
Confidence 467888886 4788999987311 11 121 22221 22356666 9999887553 578888888875
No 329
>KOG1357|consensus
Probab=95.45 E-value=0.0063 Score=45.44 Aligned_cols=68 Identities=25% Similarity=0.309 Sum_probs=53.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH----hcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV----CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~----~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
..+.++.++.|++...+|+|-|....+....|...-++ ...+|+..=-++|.+| -.||.+.|++++|+
T Consensus 293 v~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfg-a~GGyiagsk~lid 364 (519)
T KOG1357|consen 293 VDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFG-AAGGYIAGSKELID 364 (519)
T ss_pred cccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcc-cccceecCcHHHHh
Confidence 46889999999999999999888776665555555454 1446888888889655 55899999999986
No 330
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=95.45 E-value=0.048 Score=40.04 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC---H--HHHhcCCcEEEEcCCCCCccceeEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP---L--AEVCASVDTVMFCLSKGLGAPVGSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~---~--~~~~~~~D~v~~s~~K~lg~p~gg~l~g 64 (71)
+.+++++++|++||+.+++|=-+-- .|.+ + ..+--.-|+++..-.=+.|.|+|++|+.
T Consensus 205 ~fl~~lr~lCd~~g~LLI~DEVQtG-----~GRTGk~fA~e~~gV~PDI~tlaK~LgGG~PigA~la~ 267 (404)
T COG4992 205 EFLKALRELCDEHGALLILDEVQTG-----LGRTGKLFAYEHYGVEPDILTLAKALGGGFPIGAMLAT 267 (404)
T ss_pred HHHHHHHHHHHHhCeEEEEeccccC-----CCccchHHHHHHhCCCCCEEEeeccccCCccceeeEEc
Confidence 4689999999999999999932100 2222 1 1223446899888777778899998886
No 331
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=95.32 E-value=0.021 Score=40.79 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHhc-CCcEEEecccchHHhhhCC-CCHHHHhcCCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEH-NIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~-gi~l~~DgAr~~~~~~~~~-~~~~~~~~~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+.+++|.++|+++ +++++.|-+ +......+ .++......--++.-|+||.++ |. -|.+++++++++
T Consensus 232 ~~~~~l~~la~~~~~~~ii~De~--Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~ 301 (431)
T PRK15481 232 RRAAALRNLLARYPQVLVIIDDH--FALLSSSPYHSVIPQTTQRWALIRSVSKALG-PDLRLAFVASDSATSA 301 (431)
T ss_pred HHHHHHHHHHHhcCCceEEecCc--hhhhccCCCCCCCcCCCCCEEEEeeeccccC-CCceeEEEeCCHHHHH
Confidence 3567999999999 999999965 11111111 1111111112278889999988 83 468888887765
No 332
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=95.28 E-value=0.024 Score=41.55 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=38.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC--HHHHhcCCcEEEEcCCCCC--ccceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP--LAEVCASVDTVMFCLSKGL--GAPVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~--~~~~~~~~D~v~~s~~K~l--g~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++|=.+- ..-..|.- ...+--..|+++| .|.+ |.|+| .++++++++
T Consensus 243 ~yl~~l~~lc~~~g~llI~DEv~t--G~GrtG~~~a~~~~gv~PDiv~~--gK~l~gG~pi~-av~~~~~i~ 309 (457)
T PRK05639 243 NFFKELKKLLDEHGILLVMDEVQT--GIGRTGKWFASEWFEVKPDLIIF--GKGVASGMGLS-GVIGRKELM 309 (457)
T ss_pred HHHHHHHHHHHHcCCEEEEechhh--ccCcCchHHHHHhcCCCCCEEEe--chhhcCCCcce-eEEehHHHH
Confidence 468999999999999999993321 00012211 1122234799996 6766 45655 455566654
No 333
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=95.24 E-value=0.032 Score=40.35 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCCcEEEEcCCCCCccc--eeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASVDTVMFCLSKGLGAP--VGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~D~v~~s~~K~lg~p--~gg~l~g~~~~i 69 (71)
++++++.++|++||+.+++|=++. .....|. ....+.-..|++++ .|.+++= -.+.++++++++
T Consensus 229 ~~l~~l~~lc~~~~~llI~DEv~t--G~Gr~G~~~~~~~~~v~pDi~~~--gK~l~gG~~p~~a~~~~~~~~ 296 (427)
T TIGR00508 229 TYLKRVQALCKQYDILLIADEIAT--GFGRTGKLFACEHAGVVPDILCV--GKALTGGYMTLSATVTTDKVA 296 (427)
T ss_pred HHHHHHHHHHHHcCCEEEEecccc--CCCcCCccchhhhcCCCCCEEEe--chhhhcCcccceEEEEcHHHH
Confidence 578999999999999999995431 0111222 12223235688875 6765422 135566666553
No 334
>KOG1360|consensus
Probab=95.17 E-value=0.0089 Score=44.51 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHhcCCcEEEe---cccchHHhhhCCCCHH---HHhcCCcEEEEcCCCCCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD---GARVFNAASYLGLPLA---EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D---gAr~~~~~~~~~~~~~---~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~ 70 (71)
-+|+||+++||+||...++| +.+++.. .|-.+. -++...|+++=-+-|.+| ..||-|.+++++|+
T Consensus 320 cpleelcDvah~yGAiTFlDEVHAVGlYG~---rGaGvgerdGvm~kvDiIsGTLgKafG-cVGGYIAat~~LvD 390 (570)
T KOG1360|consen 320 CPLEELCDVAHKYGAITFLDEVHAVGLYGP---RGAGVGERDGVMHKVDIISGTLGKAFG-CVGGYIAATRKLVD 390 (570)
T ss_pred CCHHHHHHHHHHhCceeeeehhhhhccccC---CCCCccccCCcchhhhhcccchhhhcc-cccceehhhhhHHH
Confidence 47999999999999999999 3333211 121222 235668999989999766 56889999998875
No 335
>PRK06148 hypothetical protein; Provisional
Probab=95.11 E-value=0.048 Score=43.60 Aligned_cols=63 Identities=19% Similarity=0.157 Sum_probs=38.7
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cc-cchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GA-RVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gA-r~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i 69 (71)
+.++++.++|++||+.+++| |. |.-.. ......+.-..|+++++-.=+.|.|+|+++ +++++.
T Consensus 805 ~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~----~~a~e~~gv~PDivt~gK~lggG~Plgav~-~~~ei~ 872 (1013)
T PRK06148 805 GYLREVYAMVRAAGGVCIADEVQVGFGRVGSH----WWAFETQGVVPDIVTMGKPIGNGHPMGAVV-TTREIA 872 (1013)
T ss_pred HHHHHHHHHHHHhCCEEEEEecccCCCCCCCc----chhhhhcCCCcceeeecccccCCcceEEEE-EcHHHH
Confidence 46899999999999999999 44 31100 001122223469988843333456877655 456654
No 336
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=95.09 E-value=0.027 Score=39.45 Aligned_cols=64 Identities=22% Similarity=0.047 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+++++.+.|+ +++++++|.+- .... ...++..+....| ++.-|++|.+|.|. -|.+++++++++
T Consensus 173 ~~~~l~~~~~-~~~~iI~Deay--~~f~-~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~ 240 (364)
T PRK04781 173 QIERALQALQ-GKALVVVDEAY--GEFS-DVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIA 240 (364)
T ss_pred HHHHHHHhCC-CCcEEEEeCcc--hhhc-CCcchHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHH
Confidence 4566666664 47899999872 1111 1223323322233 77789999888673 578889988875
No 337
>KOG3843|consensus
Probab=95.07 E-value=0.003 Score=45.04 Aligned_cols=54 Identities=28% Similarity=0.527 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH----HH-----hcCCcEEEEcCCCCCccceeEEE
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA----EV-----CASVDTVMFCLSKGLGAPVGSIL 62 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~----~~-----~~~~D~v~~s~~K~lg~p~gg~l 62 (71)
+|++++|+.+|..|+||-++..| ||..-. .+ +...|.+.=|.+|.+..|.||.+
T Consensus 173 pd~leaiaaica~~diphivnna--------yglqsee~i~~iaa~~~~grida~vqsldknf~vpvggai 235 (432)
T KOG3843|consen 173 PDNLEAIAAICAAHDIPHIVNNA--------YGLQSEECIHKIAAAAECGRIDAFVQSLDKNFMVPVGGAI 235 (432)
T ss_pred CchHHHHHHHHHccCchhhhccc--------cccchHHHHHHHHHHhhhccHHHHHHHhhhcceeecchhH
Confidence 57899999999999999888877 665532 22 35679999999999999998854
No 338
>KOG0257|consensus
Probab=95.00 E-value=0.027 Score=41.42 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcC-----CcEEEEcCCCCCccce--eEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCAS-----VDTVMFCLSKGLGAPV--GSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~-----~D~v~~s~~K~lg~p~--gg~l~g~~~~i 69 (71)
++|++|+++|++||+.++.|=+ .+...+-+-..-.++.. --+=..|++|.+|+.. -|-++|++.++
T Consensus 192 eeLe~ia~l~~k~~~lvisDev--Ye~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~ 264 (420)
T KOG0257|consen 192 EELERIAELCKKHGLLVISDEV--YEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLY 264 (420)
T ss_pred HHHHHHHHHHHHCCEEEEEhhH--hHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhh
Confidence 5799999999999999999965 33333333211111111 1244568999888763 35666666654
No 339
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=94.95 E-value=0.037 Score=38.58 Aligned_cols=65 Identities=12% Similarity=0.047 Sum_probs=42.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++++.+.|++++.++++|-+-. ... ...++..+.. .+ ++.-|+||.+|.|. -|.+++++++++
T Consensus 150 ~~l~~l~~~~~~~~~~vI~DEay~--~~~-~~~s~~~~~~-~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~ 218 (339)
T PRK06959 150 ARLLRWHAQLAARGGTLIVDEAFA--DTL-PAASLAAHTD-RPGLVVLRSVGKFFGLAGVRAGFVLAAPALLA 218 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCc--cCC-CcccchhccC-CCCEEEEecChhhcCCcchheEEEecCHHHHH
Confidence 457778888889999999996511 000 1123333322 23 67779999888784 478888888875
No 340
>KOG1401|consensus
Probab=94.81 E-value=0.045 Score=40.41 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=41.2
Q ss_pred CcHHHHHHHHHhcCCcEEEe----c-ccchHHhhhCCCCHHHH-hcCCcEEEEcCCCCCccceeEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----G-ARVFNAASYLGLPLAEV-CASVDTVMFCLSKGLGAPVGSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----g-Ar~~~~~~~~~~~~~~~-~~~~D~v~~s~~K~lg~p~gg~l~g~~ 66 (71)
+-+..+...|++++++|++| | .|+-. +. ..++ ..--|+.++.--=..|.|+|+.++.++
T Consensus 227 eFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~-----~~-a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~k 291 (433)
T KOG1401|consen 227 EFLIGLRKECDDNGVLLIFDEVQTGLGRLGY-----GW-AQEYFGVTPDITTVAKPLGGGLPIGATGVRDK 291 (433)
T ss_pred HHHHHHHHHHhhcCceEEeehhhhCccccch-----HH-HHHHhCcCCcceeehhhccCCceeEEEeehHH
Confidence 34788999999999999999 4 34321 11 1233 345689888766677889887776553
No 341
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=94.79 E-value=0.048 Score=37.80 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
.+++.++++ +++++++|-+-. .. .+.+........+ ++..|++|.+|.|. .|.+++++++++
T Consensus 159 ~~~l~~i~~-~~~~ii~De~y~--~~--~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~ 224 (337)
T PRK03967 159 EEEILKVLE-TGKPVVLDEAYA--EF--SGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIID 224 (337)
T ss_pred HHHHHHHHh-cCCEEEEECchh--hh--cccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHH
Confidence 467788885 799999997721 11 1222222222112 66789999988784 577888888765
No 342
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=94.75 E-value=0.041 Score=40.19 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC---CCHHHH---hcCCcEEEEcCCCCCccce---eEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG---LPLAEV---CASVDTVMFCLSKGLGAPV---GSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~---~~~~~~---~~~~D~v~~s~~K~lg~p~---gg~l~g~~~~ 68 (71)
++|++|.++|.+||+.++-|== .......| .++..+ ....-+.+.|.+|.+.-+. +-+|+.++++
T Consensus 178 eeL~~i~elc~kh~v~VISDEI--HaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~l 251 (388)
T COG1168 178 EELRKIAELCLRHGVRVISDEI--HADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNREL 251 (388)
T ss_pred HHHHHHHHHHHHcCCEEEeecc--cccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHH
Confidence 6899999999999999999921 11112223 222222 2233477888899776663 3467777664
No 343
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=94.73 E-value=0.035 Score=39.12 Aligned_cols=53 Identities=21% Similarity=0.129 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC-----CCHHHHhcCCc--EEEEcCCCCCccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG-----LPLAEVCASVD--TVMFCLSKGLGAP 57 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~-----~~~~~~~~~~D--~v~~s~~K~lg~p 57 (71)
+++++|.++|++|+++++.|=+ +.... ++ .++..+....+ ++..|+||.++.|
T Consensus 192 ~~~~~l~~~a~~~~~~ii~De~--Y~~l~-~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~ 251 (396)
T PRK09257 192 EQWDELAELLKERGLIPFLDIA--YQGFG-DGLEEDAYGLRAFAAAGLELLVASSFSKNFGLY 251 (396)
T ss_pred HHHHHHHHHHHhCCcEEEEecc--ccccc-cchHHHHHHHHHHHhcCCcEEEEEEcCCcCccc
Confidence 4689999999999999999955 11111 11 11122222222 6679999988866
No 344
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=94.71 E-value=0.019 Score=41.33 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=35.5
Q ss_pred cCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCcccee-EEEEecccccc
Q psy15462 14 HNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 70 (71)
Q Consensus 14 ~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~g-g~l~g~~~~i~ 70 (71)
++..+++|+.-.+ .+.++ ++. .+|.+..|.-|.+++|-| ++++-+++.++
T Consensus 154 ~~~lliVDavSs~-----g~~~l-~~d-~iDv~~tgsQK~L~~ppGls~v~vs~~Al~ 204 (374)
T TIGR01365 154 REGLTICDATSAA-----FAQDL-DYH-KLDVVTFSWQKVLGGEGAHGMLILSPRAVA 204 (374)
T ss_pred CCCcEEEEccchh-----cCCCC-Chh-HCcEEEEechhccCCCCceEEEEECHHHHH
Confidence 5899999987322 23333 222 499999999999999976 47777766654
No 345
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=94.61 E-value=0.026 Score=40.69 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=37.2
Q ss_pred HhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 12 QEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 12 ~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
+.++.++++|++--+ .+.++ ++ +.+|+++.|.-|.+|.|.-++++-+++++++
T Consensus 165 ~~~~~llvvD~sS~~-----~s~pi-d~-~~~dvi~agsQKnlgP~Gltvvivs~~al~~ 217 (364)
T PRK12462 165 GLPDSPLIADMSSDF-----MSRPF-DV-EAYGMVYAHAQKNLGPAGVTVAIIRRALLER 217 (364)
T ss_pred ccCCCeEEEEcCchh-----hCCCC-Ch-HHccEEEeeccccCCCCceEEEEECHHHHhh
Confidence 346899999987322 22222 12 2349999999999996655788888888753
No 346
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=94.60 E-value=0.025 Score=41.07 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=36.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc---cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG---APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg---~p~gg~l~g~~~~i 69 (71)
+++++|.++|++||+.+++|=+..- .-..|.-. ..+.-..|++++ .|.++ .|++ +++++++++
T Consensus 226 ~~L~~l~~lc~~~g~lLI~DEv~tG--~GrtG~~fa~~~~gv~PDi~t~--gK~l~gG~~p~~-av~~~~~i~ 293 (428)
T PRK07986 226 EWLKRVRKLCDREGILLIADEIATG--FGRTGKLFACEHAGIAPDILCL--GKALTGGTMTLS-ATLTTREVA 293 (428)
T ss_pred HHHHHHHHHHHHcCCEEEEeccccC--CccCCCeeeecccCCCCCEEEe--chhhhCCcccCc-chhchHHHH
Confidence 4689999999999999999944210 00122111 122223588875 66553 3554 445555554
No 347
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=94.51 E-value=0.039 Score=41.39 Aligned_cols=64 Identities=11% Similarity=0.001 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHhc--CCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce--eEEEEeccc
Q psy15462 2 SIDPQLKARCQEH--NIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV--GSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~--gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~--gg~l~g~~~ 67 (71)
+++++|.++|++| +++++.|=+ +......-.++.+....-=++..|+||.+|+|. -|.++++++
T Consensus 260 e~l~~I~~ia~~~~~~l~II~DEv--Y~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~ 327 (521)
T TIGR03801 260 ESIEKIVDIVANDRPDLMILTDDV--YGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIALHKD 327 (521)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCC--chhhcccccchhhhCCCCEEEEEcchhhccCchhhhhhhhcCch
Confidence 4689999999987 999999954 111111112232222112277889999998884 566767654
No 348
>PRK08354 putative aminotransferase; Provisional
Probab=94.50 E-value=0.069 Score=36.56 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce--eEEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV--GSILAG 64 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~--gg~l~g 64 (71)
+++++|.++|+++|+++++|-+- .....-+.++ ...--++.-|++|.++.|. -|.+++
T Consensus 137 ~~l~~l~~~a~~~~~~li~De~y--~~f~~~~~~~---~~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 137 KELKPLLDAVEDRNALLILDEAF--IDFVKKPESP---EGENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred HHHHHHHHHhhhcCcEEEEeCcc--hhcccccccc---CCCcEEEEeccHhhcCCccceeeeeee
Confidence 46899999999999999999762 1101011111 1111366789999998784 355544
No 349
>PRK06149 hypothetical protein; Provisional
Probab=94.50 E-value=0.079 Score=42.14 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=38.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC---CHHHHhcCCcEEEEcCCCCCc--cceeEEEEeccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL---PLAEVCASVDTVMFCLSKGLG--APVGSILAGPEEFI 69 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~---~~~~~~~~~D~v~~s~~K~lg--~p~gg~l~g~~~~i 69 (71)
++++++.++|++||+.+++|=.+-- .-..|. ....+--..|++++ .|.+| .|+|++ +++++++
T Consensus 765 ~yL~~l~~lc~~~g~llI~DEV~tG--fGRtG~~~~a~e~~gv~PDivt~--gK~lg~G~Pl~av-~~~~~i~ 832 (972)
T PRK06149 765 GYLQQVYAAVRARGGVCIADEVQVG--YGRLGHYFWGFEQQGVVPDIITM--AKGMGNGHPLGAV-ITRREIA 832 (972)
T ss_pred HHHHHHHHHHHHcCCEEEEEeehhc--CCccCccchhhhhcCCCCCEEEe--cccccCCeeeEEE-EEcHHHH
Confidence 4589999999999999999932100 001221 12222234699877 56555 487655 5566654
No 350
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=94.33 E-value=0.054 Score=39.38 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=36.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH--HHHhcCCcEEEEcCCCCCc-c--ceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL--AEVCASVDTVMFCLSKGLG-A--PVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~--~~~~~~~D~v~~s~~K~lg-~--p~gg~l~g~~~~ 68 (71)
+.++++.++|++||+.+++|=++.- .-..|.-. ..+--..|+++| .|.++ + |.+ .+++++++
T Consensus 228 ~yl~~l~~lc~~~g~llI~DEv~tG--~GrtG~~~a~~~~gv~PDiv~~--gK~l~gG~~p~~-a~~~~~~i 294 (429)
T PRK06173 228 TYLVKARELCDQYGVLLIFDEIATG--FGRTGKLFALEHAGVVPDIMCI--GKALTGGYLTLS-ATITTEAI 294 (429)
T ss_pred HHHHHHHHHHHHcCCeEEecchhcC--CCcCCcchHHHhcCCCCCEEEe--ehhhhCCccccc-eEEecHHH
Confidence 4689999999999999999954310 01122222 222224688885 66653 2 444 44455544
No 351
>PRK09275 aspartate aminotransferase; Provisional
Probab=94.23 E-value=0.043 Score=41.25 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHh--cCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCCccce--eEEEEeccc
Q psy15462 2 SIDPQLKARCQE--HNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV--GSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~--~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~--gg~l~g~~~ 67 (71)
+++++|.++|++ ++++++.|-+ +........++.+....--++..|+||.+++|. -|.++++++
T Consensus 261 e~l~~I~~ia~~~~~~l~II~DEv--Y~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~i~~~~~ 328 (527)
T PRK09275 261 ESLEKIADIVNEKRPDLMIITDDV--YGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGVIALHED 328 (527)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCC--ChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhhhhcCch
Confidence 468999999964 5999999954 111111112222222222377789999998884 567778776
No 352
>KOG0256|consensus
Probab=94.11 E-value=0.13 Score=38.25 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHhcCCcEEEe---cccchHHhhhCCCCHHHHhcCC----c--EEEEcCCCCCccce--eEEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD---GARVFNAASYLGLPLAEVCASV----D--TVMFCLSKGLGAPV--GSILAGPEE 67 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D---gAr~~~~~~~~~~~~~~~~~~~----D--~v~~s~~K~lg~p~--gg~l~g~~~ 67 (71)
+++..+..+|.++||.|+.| ..-+|.... =.++.|+...- | .+.+|.+|.+|.|. -|+|....|
T Consensus 246 e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~--F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne 320 (471)
T KOG0256|consen 246 EELISLLNFASRKNIHVISDEIYAGSVFDKSE--FRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNE 320 (471)
T ss_pred HHHHHHHHHHhhcceEEEeehhhcccccCccC--ceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecCh
Confidence 57889999999999999999 333332211 12344553222 2 67899999999994 567765544
No 353
>KOG2040|consensus
Probab=93.94 E-value=0.048 Score=42.84 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCC-CCHHHHhcCCcEEEEcCCCC------CccceeEEEEecccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKG------LGAPVGSILAGPEEF 68 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~-~~~~~~~~~~D~v~~s~~K~------lg~p~gg~l~g~~~~ 68 (71)
+.+++++++-|+||=.|++|||-+ | +..| +.+-++ ++|..-..+||. .|+|..|=|.-++.+
T Consensus 697 ~~i~d~cd~iHehGGQVYlDGANM-N--AqVGlc~pGd~--GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HL 765 (1001)
T KOG2040|consen 697 EGIDDICDIIHEHGGQVYLDGANM-N--AQVGLCRPGDI--GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL 765 (1001)
T ss_pred ccHHHHHHHHHhcCCEEEecCCCc-c--ceecccCCccc--cccceeecccceeeecCCCCCCCCCccchhhhc
Confidence 468999999999999999999942 2 2222 234454 788888888884 456655555555544
No 354
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=93.85 E-value=0.021 Score=39.70 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=37.2
Q ss_pred HHHHHHHHHh-cCCcEEEecccchHHhhhCCCCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 4 DPQLKARCQE-HNIPVHMDGARVFNAASYLGLPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 4 l~~i~~~a~~-~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
.+++.++++. .++++++|.+-. ... ...+..++....+ ++.-|+||++|.|. -|.+++++++++
T Consensus 166 ~~~l~~l~~~~~~~~vivDeay~--~~~-~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~ 234 (354)
T PRK04635 166 RADIEQLIEMTPDAIVVVDEAYI--EFC-PEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIE 234 (354)
T ss_pred HHHHHHHHHhCCCcEEEEeCchH--hhc-cCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHH
Confidence 3445555543 259999998821 111 1223333322112 57779999988663 467888888775
No 355
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=93.72 E-value=0.017 Score=40.24 Aligned_cols=65 Identities=20% Similarity=0.025 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhc-CCc-EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCA-SVD-TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~-~~D-~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++++.+.|++ +..+++|.|- .... ...+...+.. .-. ++.-|+||.+|.|. -|.+++++++|+
T Consensus 165 ~~l~~l~~~~~~-~~~vivDEay--~~f~-~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~ 233 (351)
T PRK01688 165 QDLRTLLELTRG-KAIVVADEAY--IEFC-PQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVIN 233 (351)
T ss_pred HHHHHHHHhCCC-CcEEEEECch--hhcC-CCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHH
Confidence 356777777776 5789999882 1111 1123333322 222 67789999888673 367778888764
No 356
>PRK12566 glycine dehydrogenase; Provisional
Probab=93.64 E-value=0.17 Score=40.75 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=43.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCC------CCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSK------GLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K------~lg~p~gg~l~g~~~~i~ 70 (71)
+++++|.+.+|++|.. .++++-+.. ...=.++.|+ ++|++ +.-++ ++|+|..|++..+++++.
T Consensus 224 ~d~~~i~~~~h~~gal-~~~~~d~la--L~ll~~Pge~--GADI~-vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R 292 (954)
T PRK12566 224 RDLRPLIDQLHGQQAL-ACVAADLLS--LLVLTPPGEL--GADVV-LGSTQRFGVPMGYGGPHAAYFACRDDYKR 292 (954)
T ss_pred ccHHHHHHHHHHcCCE-EEEEeCHHH--HhCCCChhhc--CCcEE-eeCCCcCCCCCCCCCCCeeeeeehHHHHh
Confidence 5789999999999976 557763331 1133456674 89998 55555 556666789988888764
No 357
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=93.39 E-value=0.075 Score=37.16 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=38.0
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHh-cCC--cEEEEcCCCCCccce--eEE-EEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVC-ASV--DTVMFCLSKGLGAPV--GSI-LAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~-~~~--D~v~~s~~K~lg~p~--gg~-l~g~~~~i~ 70 (71)
++++|.+.|++ ++++++|.+ +.....-+ .+..... ..- -++..|++|.+|.|. -|. +++++++++
T Consensus 180 ~~~~l~~~~~~-~~~ii~De~--y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~ 252 (371)
T PRK05166 180 QLARVLDATPP-ETLIVVDEA--YAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVG 252 (371)
T ss_pred HHHHHHHhCCC-CcEEEEECc--HHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHH
Confidence 56677777764 889999987 22222111 1222221 222 267889999888774 355 556777654
No 358
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=92.95 E-value=0.29 Score=34.00 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCC-c-EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASV-D-TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~-D-~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
.+++.+++ ++++++++|-+ +... .+.+...+.... . ++.-|++|.++.|. -|.+++++++++
T Consensus 157 ~~~l~~l~-~~~~~ii~DE~--Y~~f--~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~ 222 (335)
T PRK14808 157 REEIERIL-KTGAFVALDEA--YYEF--HGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFID 222 (335)
T ss_pred HHHHHHHH-hcCCEEEEECc--hhhh--cCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHH
Confidence 34566666 58999999976 1111 122332222222 2 56679999988773 478888888875
No 359
>KOG2862|consensus
Probab=92.78 E-value=0.092 Score=38.00 Aligned_cols=57 Identities=28% Similarity=0.307 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH-hcCCcEEEEcCCCCCcccee-EEEEecc
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV-CASVDTVMFCLSKGLGAPVG-SILAGPE 66 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~-~~~~D~v~~s~~K~lg~p~g-g~l~g~~ 66 (71)
++...++||+|+..+++|+- +..|.+.=++ --++|.++-.--|.+++|-| ++|+.++
T Consensus 162 ~~~~g~lc~k~~~lllVD~V------aSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ 220 (385)
T KOG2862|consen 162 LAISGELCHKHEALLLVDTV------ASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSD 220 (385)
T ss_pred HHHHHHHhhcCCeEEEEech------hhcCCccceehhhcccEEEecchhhcCCCCCcceeecCH
Confidence 67788999999999999976 2344433222 25899999999999999987 4665544
No 360
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=92.55 E-value=0.13 Score=36.03 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCc-EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD-TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D-~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++++.++| ++++++.|-+-. ... ....+..+...-. ++.-|++|.+|.|. -|.+++++++++
T Consensus 188 ~~l~~l~~~~--~~~~iI~De~Y~--~~~-~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~ 254 (374)
T PRK02610 188 AELEWLRSLP--EDILVVIDEAYF--EFS-QTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIA 254 (374)
T ss_pred HHHHHHHhcc--CCcEEEEecccc--ccC-ccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHHH
Confidence 3567777766 489999996621 101 1112233322212 67789999998884 667788888775
No 361
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=92.39 E-value=0.31 Score=33.86 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCC--CCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~--~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
-++|.++++++++ +++|-+ +......+ .++.......+ ++.-|+||.+|.|. -|.+++++++++
T Consensus 167 ~~~l~~l~~~~~~-~IiDE~--y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~ 236 (360)
T PRK07392 167 REAILPLLEQFAL-VVVDEA--FMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQ 236 (360)
T ss_pred HHHHHHHHHHCCE-EEEECc--hhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHH
Confidence 4678889999996 666965 11111112 12222222222 56679999988773 567778877764
No 362
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=92.19 E-value=0.3 Score=38.19 Aligned_cols=61 Identities=20% Similarity=0.040 Sum_probs=37.1
Q ss_pred cHHHHHHHHHhcCCcE-EEecccchHHhhh---CCCCHHHHhcCCcEE---EEcCCCCCccc-eeEEEEecc
Q psy15462 3 IDPQLKARCQEHNIPV-HMDGARVFNAASY---LGLPLAEVCASVDTV---MFCLSKGLGAP-VGSILAGPE 66 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l-~~DgAr~~~~~~~---~~~~~~~~~~~~D~v---~~s~~K~lg~p-~gg~l~g~~ 66 (71)
++++|.+.+ |+++ |+|-|+.....-. .+.+......++|.+ +=|.||.+.+. |+++|--+.
T Consensus 314 d~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~ 382 (713)
T PRK15399 314 NTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKG 382 (713)
T ss_pred CHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecC
Confidence 577788877 7888 7997743211100 111111111257887 99999988877 577775443
No 363
>PRK08637 hypothetical protein; Provisional
Probab=92.07 E-value=0.2 Score=35.31 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHh-----cCCcEEEecccchHHhhhCCCCH----HHHhcCC-cEEEE---cCCCCCccce--eEEEE
Q psy15462 2 SIDPQLKARCQE-----HNIPVHMDGARVFNAASYLGLPL----AEVCASV-DTVMF---CLSKGLGAPV--GSILA 63 (71)
Q Consensus 2 ~~l~~i~~~a~~-----~gi~l~~DgAr~~~~~~~~~~~~----~~~~~~~-D~v~~---s~~K~lg~p~--gg~l~ 63 (71)
+++++|.++|++ |+++++.|=+ +....+.+.+. ..+.... .++++ |++|.++.|. .|.++
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~iI~De~--Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~ 240 (388)
T PRK08637 166 KEATAIVEAIKELADAGTKVVAVVDDA--YFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFIT 240 (388)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeccc--chhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEE
Confidence 467888888775 9999999955 11111122221 2222211 23222 8999888884 44443
No 364
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=91.96 E-value=0.32 Score=34.33 Aligned_cols=64 Identities=22% Similarity=0.006 Sum_probs=39.9
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhc--CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCA--SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~--~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
+.+++.++++.. +++++|-+- ..... ..+...... .-.++.-|++|.+|.|. -|.+++++++|+
T Consensus 193 ~~~~l~~l~~~~-~~vi~DeaY--~~~~~-~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~ 260 (380)
T PLN03026 193 SDDDLLKILELP-ILVVLDEAY--IEFST-QESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIE 260 (380)
T ss_pred CHHHHHHHHhcC-CEEEEECcc--hhhcC-CcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHH
Confidence 356777777654 899999772 11111 112222211 22478899999888774 478889988875
No 365
>PLN02672 methionine S-methyltransferase
Probab=91.74 E-value=0.16 Score=41.29 Aligned_cols=67 Identities=19% Similarity=0.093 Sum_probs=40.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC-----CHHHHh---cC---C-cE-EEEcCCCCCccce--eEEEEec-
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL-----PLAEVC---AS---V-DT-VMFCLSKGLGAPV--GSILAGP- 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~-----~~~~~~---~~---~-D~-v~~s~~K~lg~p~--gg~l~g~- 65 (71)
+++++|.++|++||++++.|-+- ....+.+. ++.+.. .. . .+ +.-|+||.++.|. -|.++++
T Consensus 849 eeLe~Llela~k~di~VIsDEaY--sdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIGylIap~ 926 (1082)
T PLN02672 849 SEIEEILSVCAKYGARVIIDTSF--SGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFGFLALND 926 (1082)
T ss_pred HHHHHHHHHHHHcCCEEEEeCCC--CccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHheeEEeCC
Confidence 57899999999999999999662 11111111 122221 11 1 23 4449999888884 5667665
Q ss_pred ccccc
Q psy15462 66 EEFIQ 70 (71)
Q Consensus 66 ~~~i~ 70 (71)
+++++
T Consensus 927 ~eLi~ 931 (1082)
T PLN02672 927 SVLID 931 (1082)
T ss_pred HHHHH
Confidence 44654
No 366
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=91.74 E-value=0.072 Score=36.88 Aligned_cols=60 Identities=23% Similarity=0.104 Sum_probs=36.0
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH-HHHhcC-CcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL-AEVCAS-VDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~-~~~~~~-~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++|.++| ++++++|.+-. ... ..+. ..+... --++..|++| ++.|. -|.+++++++++
T Consensus 174 ~~~~i~~~~---~~~ii~De~y~--~~~--~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~ 237 (356)
T PRK04870 174 DVERIIEAA---PGLVVVDEAYQ--PFA--GDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIA 237 (356)
T ss_pred HHHHHHHHC---CCEEEEECCch--hhc--CcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHH
Confidence 455555555 78999998731 111 1121 122221 1378899999 78774 567888888765
No 367
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=91.36 E-value=0.086 Score=37.13 Aligned_cols=66 Identities=18% Similarity=0.070 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCC--CHHHHhcCC--cEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGL--PLAEVCASV--DTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~--~~~~~~~~~--D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++++.++|++++ .+++|-+- ......+. +........ -++.-|++|.+|.|. -|.+++++++++
T Consensus 171 ~~l~~l~~~~~~~~-~~iiDe~y--~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~ 242 (366)
T PRK01533 171 RKLTQFIEGISENT-LIVIDEAY--YEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIE 242 (366)
T ss_pred HHHHHHHHhCCCCC-EEEEEccH--HHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHH
Confidence 46788888888877 56778652 11111111 111222222 377889999988774 467778888765
No 368
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=90.89 E-value=0.13 Score=37.33 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=47.6
Q ss_pred CcHHHHHHHHHhc--CCcEEEecccchHHhhhCCCCHHHH---hcCCcEEEEcCCCCCccce---eEEEEeccccccC
Q psy15462 2 SIDPQLKARCQEH--NIPVHMDGARVFNAASYLGLPLAEV---CASVDTVMFCLSKGLGAPV---GSILAGPEEFIQK 71 (71)
Q Consensus 2 ~~l~~i~~~a~~~--gi~l~~DgAr~~~~~~~~~~~~~~~---~~~~D~v~~s~~K~lg~p~---gg~l~g~~~~i~~ 71 (71)
++++++.++.|+- ++.+++|.. ||.=+.+. --++|++.=|+-|.-|+-+ ||-++|++++|++
T Consensus 186 ~eI~~~i~~vk~inpn~ivFVDNC--------YGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~ 255 (416)
T COG4100 186 AEIEEMITFVKEINPNVIVFVDNC--------YGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEA 255 (416)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecc--------chhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHHh
Confidence 4678888888874 578899976 55333322 2689999999999988775 8899999999874
No 369
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=90.73 E-value=0.36 Score=35.37 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCH---HHHhc-CCcEEEEcCCCCCccce--eEEEEecccccc
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPL---AEVCA-SVDTVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~---~~~~~-~~D~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
-++|.++|++|+++++-|-. .....+.+.++ ..+.. +==++.=|+||.+. |. .|.++.++++++
T Consensus 249 R~~Ll~lA~~~~~~IIEDD~--y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~-PglRlG~vv~p~~~~~ 318 (459)
T COG1167 249 RKALLALAEKYDVLIIEDDY--YGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLA-PGLRLGYVVAPPELIE 318 (459)
T ss_pred HHHHHHHHHHcCCeEEeeCc--chhhhcCCCCCCChHhhCCCCCEEEEeeehhhcc-cccceeeeeCCHHHHH
Confidence 47899999999999999954 22222223333 33322 11266678999655 63 689999988775
No 370
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=90.69 E-value=0.22 Score=32.84 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+.||++||.|++|-.
T Consensus 52 ~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 52 EDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhhhhccccccceEEEeee
Confidence 5789999999999999999954
No 371
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=89.57 E-value=0.39 Score=36.67 Aligned_cols=59 Identities=15% Similarity=0.002 Sum_probs=42.0
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCC---H-HHHhcCCcEEEEcCCCCCccc-eeEEEEec
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLP---L-AEVCASVDTVMFCLSKGLGAP-VGSILAGP 65 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~---~-~~~~~~~D~v~~s~~K~lg~p-~gg~l~g~ 65 (71)
++++|.+.+++.++|+.+|-|.=+ . .+.. + .....++|+++=|.||.+++. ++++|-.+
T Consensus 183 n~~~i~~~~~~~~a~v~~deah~~---~-~~~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~ 246 (557)
T COG1982 183 NLRKIVELLHHYGAWVLYDEAHPA---H-FDFSPMLPESALNGGADFVTQSTHKLLAALSQASMIHVK 246 (557)
T ss_pred cHHHHHHHHhhcCceEEhhhcCcc---c-ccccccCcchhhhcCceEEEechhhhhhhhhhhHHHhhC
Confidence 678999999999999999944211 1 1111 1 223478999999999988876 57776444
No 372
>smart00642 Aamy Alpha-amylase domain.
Probab=89.54 E-value=0.3 Score=31.28 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.+++|-.
T Consensus 70 ~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 70 EDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 5789999999999999999954
No 373
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=89.39 E-value=0.45 Score=34.79 Aligned_cols=58 Identities=26% Similarity=0.286 Sum_probs=40.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCCCC-ccce--eEEEEec
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGL-GAPV--GSILAGP 65 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K~l-g~p~--gg~l~g~ 65 (71)
.+++|.++||+||+.+..|=|+...+ ...++. ..++|+.+-|.+|.| |+|. +++.+-+
T Consensus 184 dm~aiT~~AH~~galv~wDLAHsaGa---vp~~Lh--~~gaDfaigcsyKYLNgGPGapa~l~v~~ 244 (407)
T COG3844 184 DMRAITALAHQHGALVGWDLAHSAGA---VPVDLH--AAGADFAIGCSYKYLNGGPGAPAGLFVAP 244 (407)
T ss_pred eHHHHHHHHHhcCceEEeehhcccCC---cceeec--ccCCCeeeeeeceeccCCCCCceeEEecc
Confidence 57899999999999999996643211 222222 479999999999965 4453 3454443
No 374
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=89.11 E-value=0.58 Score=36.68 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=36.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH---HHHhcCC---c--EEEEcCCCCCccc-eeEEE
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL---AEVCASV---D--TVMFCLSKGLGAP-VGSIL 62 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~---~~~~~~~---D--~v~~s~~K~lg~p-~gg~l 62 (71)
-++++|.+.++.++ +|+|-|+... ......+ .-+..++ | +++=|.||.+.+. |+++|
T Consensus 313 yd~~~I~~~~~~~~--ilvDEAwgah--~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~L 378 (714)
T PRK15400 313 YNTDFIKKTLDVKS--IHFDSAWVPY--TNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMI 378 (714)
T ss_pred cCHHHHHHHhCCCC--EEEEccchhh--hccCcccCCcChhhcCCCCCCceEEEEchhhcccchhHHhHH
Confidence 36889999999997 7999663221 1111111 1122456 5 9999999988876 46655
No 375
>KOG3974|consensus
Probab=87.97 E-value=0.32 Score=34.43 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchH
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFN 27 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~ 27 (71)
.++.+|.++++++++|+.+||-++|-
T Consensus 119 k~i~~iley~~~~dvP~VIDaDGL~L 144 (306)
T KOG3974|consen 119 KEIAKILEYLRGKDVPLVIDADGLWL 144 (306)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCceEe
Confidence 46789999999999999999887773
No 376
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=86.25 E-value=0.6 Score=34.59 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=18.7
Q ss_pred CcHHHHHHHHHhcCCcEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMD 21 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D 21 (71)
+.++++.++|++||+.+++|
T Consensus 272 ~yl~~lr~lc~~~g~lLI~D 291 (464)
T TIGR00699 272 DFFRKLRDITKKHNVAFIVD 291 (464)
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 45899999999999999999
No 377
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=85.61 E-value=0.92 Score=26.31 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCcEEEe
Q psy15462 5 PQLKARCQEHNIPVHMD 21 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D 21 (71)
++|.++|+++|||++-|
T Consensus 30 ~~I~~~A~e~~VPi~~~ 46 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVED 46 (82)
T ss_pred HHHHHHHHHcCCCEEeC
Confidence 57999999999999999
No 378
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=85.54 E-value=2.6 Score=31.57 Aligned_cols=64 Identities=20% Similarity=0.180 Sum_probs=42.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCCC-----CCccceeEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSK-----GLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K-----~lg~p~gg~l~g~~~~i~ 70 (71)
++++++.+.+|++|..+.+=.=-+. -..=.||.|+ ++|++.=++.- ++|+|-.|++..+++++.
T Consensus 227 ~d~~~l~~~~h~~~al~~v~aDpla---L~LL~pPGe~--GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R 295 (450)
T COG0403 227 EDLRALIEAAHSAGALVIVAADPLA---LGLLKPPGEF--GADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKR 295 (450)
T ss_pred hhHHHHHHHHhhcCCEEEEEechhH---hhccCCcccc--CCceEEecCcccCCCcCCCCcceeeeeEhHhHhh
Confidence 3589999999999986665322111 1123455665 89998877776 445555678888888764
No 379
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=85.50 E-value=0.75 Score=34.30 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=36.0
Q ss_pred CcHHHHHHHHHhcCCcEEEe----cccchHHhhhCCCCHH--HHhcCCcEEEEcCCCCC---ccceeEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMD----GARVFNAASYLGLPLA--EVCASVDTVMFCLSKGL---GAPVGSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D----gAr~~~~~~~~~~~~~--~~~~~~D~v~~s~~K~l---g~p~gg~l~g~~ 66 (71)
.+++++.++|++|||.++.| |.+ ..|.-+. +..---|++|++ |+| ..|++++++.++
T Consensus 236 ~Yl~~vr~iC~ky~ILlI~DEV~tGFG------RTG~~FA~e~~gi~PDi~~~a--KGLT~GY~Pl~a~l~~~~ 301 (449)
T COG0161 236 GYLKRVREICDKYGILLIADEVATGFG------RTGKMFACEHAGIVPDILCLA--KGLTGGYLPLSAVLTSDR 301 (449)
T ss_pred HHHHHHHHHHHHcCcEEEeecceeCCC------cCchhhhhhhcCCCCCeeeec--ccccccchhhHhHhhhHH
Confidence 46899999999999999999 321 1222222 111234777654 644 357787777654
No 380
>KOG1405|consensus
Probab=85.48 E-value=0.72 Score=34.18 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=31.2
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCC----CCHHHHhcCCcEEEEcCCC
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLG----LPLAEVCASVDTVMFCLSK 52 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~----~~~~~~~~~~D~v~~s~~K 52 (71)
-++.+.+++++||+.+++|=.+--.. ..| ....++....|+|+||-.=
T Consensus 293 Ff~kLrdi~~Kh~v~fivDEVQTGgG--aTGk~WaHehw~l~~PpD~vTFSKK~ 344 (484)
T KOG1405|consen 293 FFRKLRDITKKHGVAFIVDEVQTGGG--ATGKFWAHEHWNLDSPPDVVTFSKKF 344 (484)
T ss_pred HHHHHHHHHHhcCeEEEeeeeecCCC--ccCceeeehhcCCCCCccceehhhhh
Confidence 46889999999999999993321100 011 1123455788999998543
No 381
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=84.41 E-value=1.4 Score=27.40 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=18.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
+.+.++.+.++++|+++.+|..
T Consensus 71 ~~~~~~~~~~~~~~~~v~~D~~ 92 (196)
T cd00287 71 EAVLDALEEARRRGVPVVLDPG 92 (196)
T ss_pred HHHHHHHHHHHHcCCeEEEeCC
Confidence 3467888999999999999954
No 382
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=84.02 E-value=0.92 Score=33.34 Aligned_cols=27 Identities=19% Similarity=0.048 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhh
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAAS 30 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~ 30 (71)
++++++.+-||++||.+++|+. +|...
T Consensus 81 ~dl~~Li~~~H~~Gi~vi~D~V--~NH~~ 107 (479)
T PRK09441 81 EELLNAIDALHENGIKVYADVV--LNHKA 107 (479)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC--ccccc
Confidence 4689999999999999999976 55443
No 383
>PRK10785 maltodextrin glucosidase; Provisional
Probab=81.91 E-value=1.2 Score=33.82 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|+.
T Consensus 226 ~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 226 AALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 5689999999999999999976
No 384
>KOG1404|consensus
Probab=80.99 E-value=0.5 Score=35.06 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccch--HHhhhCCCCHHHHhcCCcEEEEcCCCCCccceeEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVF--NAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~--~~~~~~~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l~g~~ 66 (71)
-+++++.++|+++|+.++.|=.+-- .--...|+.-.+ ---|++++.-.=+-|.|.|+++.+.+
T Consensus 233 GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~--v~PDIvTmAKgiGnG~Pl~AVvtt~E 297 (442)
T KOG1404|consen 233 GYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHG--VVPDIVTMAKGIGNGFPLGAVVTTPE 297 (442)
T ss_pred hHHHHHHHHHHHcCCEEEehhhhhccccccccccccccC--CCccHHHHHhhccCCCcceeeecCHH
Confidence 3689999999999999999933110 000111211111 12477776655566778898887653
No 385
>PLN00196 alpha-amylase; Provisional
Probab=80.85 E-value=1.5 Score=32.30 Aligned_cols=22 Identities=14% Similarity=0.009 Sum_probs=20.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.+++|+.
T Consensus 92 ~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 92 AQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 4789999999999999999976
No 386
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=80.56 E-value=1.2 Score=31.78 Aligned_cols=64 Identities=19% Similarity=0.073 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCc--EEEEcCCCCCccce--eEEEEecccccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD--TVMFCLSKGLGAPV--GSILAGPEEFIQ 70 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D--~v~~s~~K~lg~p~--gg~l~g~~~~i~ 70 (71)
++++++.+.+.+ +..|++|-| +.. +.+.+..++....+ ++.=++||.+|.+. -|..++++++|+
T Consensus 165 ~~l~~l~~~~~~-~~~vVvDEA--Y~e--F~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~ 232 (356)
T COG0079 165 EELRALLEALPE-GGLVVIDEA--YIE--FSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIA 232 (356)
T ss_pred HHHHHHHHhCCC-CcEEEEeCc--hhh--cCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHH
Confidence 356667777777 899999987 210 11222223333455 67779999888774 578999998875
No 387
>PRK12313 glycogen branching enzyme; Provisional
Probab=79.20 E-value=1.4 Score=33.60 Aligned_cols=22 Identities=18% Similarity=-0.007 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+.||++||.|++|..
T Consensus 220 ~d~k~lv~~~H~~Gi~VilD~V 241 (633)
T PRK12313 220 EDFMYLVDALHQNGIGVILDWV 241 (633)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 5789999999999999999954
No 388
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=78.66 E-value=1.5 Score=33.02 Aligned_cols=22 Identities=14% Similarity=-0.006 Sum_probs=20.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEc
Confidence 5789999999999999999965
No 389
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=78.01 E-value=1.5 Score=28.63 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=22.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHh
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAA 29 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~ 29 (71)
+.+.+.++-++++|+.+++=||+...++
T Consensus 44 e~m~~ya~~a~~~g~~viIAgAGgAAHL 71 (162)
T COG0041 44 EKMFEYAEEAEERGVKVIIAGAGGAAHL 71 (162)
T ss_pred HHHHHHHHHHHHCCCeEEEecCcchhhc
Confidence 4567888899999999999999876443
No 390
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=77.45 E-value=9.1 Score=22.24 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCcEEEecccchH
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFN 27 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~ 27 (71)
.+++.+.++++|+++.++.+.+.+
T Consensus 16 ~~ki~~~~~~~~~~~~v~~~~~~~ 39 (96)
T cd05564 16 VKKMKKAAEKRGIDAEIEAVPESE 39 (96)
T ss_pred HHHHHHHHHHCCCceEEEEecHHH
Confidence 457899999999999999876543
No 391
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=77.28 E-value=1.7 Score=32.97 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 229 ~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEEE
Confidence 4799999999999999999965
No 392
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=76.50 E-value=4.1 Score=29.53 Aligned_cols=41 Identities=15% Similarity=0.008 Sum_probs=30.6
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH-HHHhcCCcEEEEc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL-AEVCASVDTVMFC 49 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~-~~~~~~~D~v~~s 49 (71)
.+.++++.++++++|++.||- ...+-++ +-+..+||.+.++
T Consensus 200 Av~~~a~aa~~~~v~VIaDGG------Ir~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 200 AVIECADAAHGLKGHIISDGG------CTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHhccCCCeEEEcCC------cCchhHHHHHHHcCCCEEEEC
Confidence 467888889999999999965 2233343 4567899999887
No 393
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=76.41 E-value=2.3 Score=31.98 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 75 ~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 75 ADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 5789999999999999999965
No 394
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=76.06 E-value=11 Score=22.35 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcC
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCL 50 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~ 50 (71)
.+++.+.|+++|+++.+......+ +.+....+|.+..+.
T Consensus 17 a~km~~~a~~~gi~~~i~a~~~~e--------~~~~~~~~Dvill~P 55 (99)
T cd05565 17 ANALNKGAKERGVPLEAAAGAYGS--------HYDMIPDYDLVILAP 55 (99)
T ss_pred HHHHHHHHHHCCCcEEEEEeeHHH--------HHHhccCCCEEEEcC
Confidence 367899999999999999764332 333445667665543
No 395
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=75.94 E-value=5.5 Score=29.14 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=25.2
Q ss_pred cCCcEEEEcCCCCCccceeEEEEeccccccC
Q psy15462 41 ASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71 (71)
Q Consensus 41 ~~~D~v~~s~~K~lg~p~gg~l~g~~~~i~~ 71 (71)
+..|.++++.-|.+|.-.=++++-++++++|
T Consensus 189 sk~dviyagaQKnlGpaGltvvIvr~~~l~r 219 (365)
T COG1932 189 SKYDVIYAGAQKNLGPAGLTVVIVRPDLLER 219 (365)
T ss_pred hHcceEEEehhhccCccceEEEEEcHHHHhc
Confidence 4569999999999885555788888888765
No 396
>PRK05402 glycogen branching enzyme; Provisional
Probab=75.92 E-value=2 Score=33.45 Aligned_cols=22 Identities=18% Similarity=0.156 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 315 ~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 315 DDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 5789999999999999999954
No 397
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=75.44 E-value=2.1 Score=32.68 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 206 ~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 206 DDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred HHHHHHHHHHHHCCCEEEEEec
Confidence 5789999999999999999965
No 398
>PRK09505 malS alpha-amylase; Reviewed
Probab=75.01 E-value=2.6 Score=32.91 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=20.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.+++|..
T Consensus 292 ~dfk~Lv~~aH~~Gi~VilD~V 313 (683)
T PRK09505 292 ADLRTLVDEAHQRGIRILFDVV 313 (683)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 5789999999999999999965
No 399
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=74.20 E-value=3.3 Score=27.54 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCcEEEecc
Q psy15462 4 DPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgA 23 (71)
+.++.+.++++|+++.+|..
T Consensus 140 ~~~~~~~~~~~g~~v~~d~~ 159 (295)
T cd01167 140 LLELLEAAKKAGVLISFDPN 159 (295)
T ss_pred HHHHHHHHHHcCCEEEEcCC
Confidence 56678889999999999954
No 400
>PRK03705 glycogen debranching enzyme; Provisional
Probab=73.95 E-value=2.4 Score=32.88 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 242 ~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEEc
Confidence 4789999999999999999954
No 401
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=73.63 E-value=3 Score=31.53 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 81 ~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 81 DDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 4689999999999999999965
No 402
>PLN02361 alpha-amylase
Probab=73.49 E-value=3.1 Score=30.48 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.+++|..
T Consensus 76 ~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 76 HLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHHHHHHHHcCCEEEEEEc
Confidence 5789999999999999999965
No 403
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=73.25 E-value=3.1 Score=31.14 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 76 ~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 76 DDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHHHHHHHHHCCCEEEEEec
Confidence 5789999999999999999965
No 404
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=72.04 E-value=3.1 Score=24.84 Aligned_cols=18 Identities=22% Similarity=0.602 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCcEEEec
Q psy15462 5 PQLKARCQEHNIPVHMDG 22 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~Dg 22 (71)
++|.+.|++||||+.-|-
T Consensus 35 e~II~~Ake~~Vpi~edp 52 (92)
T COG2257 35 EKIIEKAKEHGVPIQEDP 52 (92)
T ss_pred HHHHHHHHHcCCCcccCH
Confidence 679999999999999884
No 405
>PLN02681 proline dehydrogenase
Probab=71.97 E-value=2.9 Score=31.12 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHhcCCcEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGAR 24 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr 24 (71)
+.+++|++.|+++|+++.+|+=.
T Consensus 220 ~rl~~i~~~A~~~gv~l~IDAE~ 242 (455)
T PLN02681 220 ERLQKLCERAAQLGVPLLIDAEY 242 (455)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCc
Confidence 35788999999999999999753
No 406
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=71.97 E-value=3 Score=29.84 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=20.2
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-+|++||++++|..
T Consensus 77 ~d~~~li~~~H~~gi~vi~D~V 98 (505)
T COG0366 77 EDFKELVEEAHKRGIKVILDLV 98 (505)
T ss_pred HHHHHHHHHHHHCCCEEEEEec
Confidence 5688999999999999999986
No 407
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=71.74 E-value=3.8 Score=28.75 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=17.2
Q ss_pred CcHHHHHHHHHhcCCcEE
Q psy15462 2 SIDPQLKARCQEHNIPVH 19 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~ 19 (71)
|+|+.+.+.||++||.+|
T Consensus 70 DpL~~~I~eaHkrGlevH 87 (311)
T PF02638_consen 70 DPLEFMIEEAHKRGLEVH 87 (311)
T ss_pred cHHHHHHHHHHHcCCEEE
Confidence 689999999999999999
No 408
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=71.71 E-value=2.9 Score=32.57 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 245 ~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 245 AEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 4789999999999999999965
No 409
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=71.59 E-value=2.8 Score=27.56 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=18.9
Q ss_pred CcHHHHHHHHHhcCCcEEEeccc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGAR 24 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr 24 (71)
+.++++.+.|+++||.+++|-..
T Consensus 62 ~~ld~~v~~a~~~gi~vild~h~ 84 (281)
T PF00150_consen 62 ARLDRIVDAAQAYGIYVILDLHN 84 (281)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEE
T ss_pred HHHHHHHHHHHhCCCeEEEEecc
Confidence 45789999999999999999554
No 410
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=70.76 E-value=3.8 Score=29.49 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCcEEEe--cccchHHhhhCCCC
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVFNAASYLGLP 35 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~~~~~~~~~~ 35 (71)
.+|.++|+|||||++-| -||..-.....|..
T Consensus 292 ~~Ir~iA~e~~VPiven~pLARaLY~~~~vg~~ 324 (349)
T PRK12721 292 LHIVKLAERNGIPVVENIPLARALFKEVECGDY 324 (349)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCc
Confidence 57999999999999999 66655433334433
No 411
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=70.72 E-value=3.8 Score=29.62 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCcEEEe--cccchHHhhhCCCC
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVFNAASYLGLP 35 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~~~~~~~~~~ 35 (71)
.+|.++|++||||++-| =||..-.....|..
T Consensus 301 ~~Ir~~A~e~~VPiven~pLARaLy~~~evg~~ 333 (358)
T PRK13109 301 LKIREIAEENGIPVIEDKPLARSLYDAVQVDQV 333 (358)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHhCCCCCc
Confidence 57999999999999999 66666444444544
No 412
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=70.32 E-value=3.4 Score=32.73 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=19.4
Q ss_pred CcHHHHHHHHHhcCCcEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDG 22 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~Dg 22 (71)
++++++.+-||++||.|++|-
T Consensus 300 ~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 300 EDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 578999999999999999994
No 413
>KOG0259|consensus
Probab=69.89 E-value=6.5 Score=29.36 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCC---HHHHhcCCcEEEE-cCCCCCccce---eEEEEec
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLP---LAEVCASVDTVMF-CLSKGLGAPV---GSILAGP 65 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~---~~~~~~~~D~v~~-s~~K~lg~p~---gg~l~g~ 65 (71)
-|++|+++|+++||+++=|=- +...++-+.+ +.++..-+-.++. |.+|..-.|. |=+++-+
T Consensus 220 HL~kiae~A~klgi~vIaDEV--Y~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~hD 287 (447)
T KOG0259|consen 220 HLKKIAETAKKLGIMVIADEV--YGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALHD 287 (447)
T ss_pred HHHHHHHHHHHhCCeEEehhh--cceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEec
Confidence 589999999999999999922 1222223444 3455555566665 4578777773 4344444
No 414
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=69.69 E-value=11 Score=27.38 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCC-HHHHhcCCcEEEEc
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLP-LAEVCASVDTVMFC 49 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-~~~~~~~~D~v~~s 49 (71)
+.+.++.++++++|++=||- ..+.-+ .+-+..++|.|.+.
T Consensus 200 v~~~a~~a~~~~v~iIADGG------i~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 200 VYECAEAARDYGVPIIADGG------IRTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp HHHHHHHHHCTTSEEEEESS-------SSHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHhhhccCceeecCC------cCcccceeeeeeecccceeec
Confidence 56889999999999999974 111111 23456889998765
No 415
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=69.55 E-value=4.6 Score=26.61 Aligned_cols=21 Identities=10% Similarity=0.022 Sum_probs=18.2
Q ss_pred CcHHHHHHHHHhcCCcEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDG 22 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~Dg 22 (71)
++++++.+.|+++|+++++|-
T Consensus 109 ~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 109 EELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 367889999999999999974
No 416
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=69.41 E-value=7.3 Score=26.70 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCC
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLS 51 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~ 51 (71)
+.+.++.+.||+.|+++.+|=.+... ...+.++.+..|.+.++..
T Consensus 99 e~~~~~~~~ake~Gl~~~l~TnG~~~-----~~~~~~l~~~~D~v~~DlK 143 (260)
T COG1180 99 EFALDLLRAAKERGLHVALDTNGFLP-----PEALEELLPLLDAVLLDLK 143 (260)
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCC-----HHHHHHHHhhcCeEEEeec
Confidence 45788999999999999999443332 1223456677899988763
No 417
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=69.02 E-value=4.9 Score=30.17 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=18.3
Q ss_pred CcHHHHHHHHHhcCCcEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMD 21 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D 21 (71)
.+.+++.++||++|+|+.+|
T Consensus 158 ~~~q~~I~~ar~~~~pVLvD 177 (467)
T COG2870 158 TNVQKMIDLAREAGIPVLVD 177 (467)
T ss_pred hhHHHHHHHHHHcCCcEEEC
Confidence 35789999999999999999
No 418
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=68.53 E-value=14 Score=26.86 Aligned_cols=41 Identities=12% Similarity=0.001 Sum_probs=29.2
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCC-HHHHhcCCcEEEEc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLP-LAEVCASVDTVMFC 49 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~-~~~~~~~~D~v~~s 49 (71)
.+.+.++.|+++|+|++=||- ..+.-+ .+-+..++|.|.+.
T Consensus 201 AV~~~a~~a~~~gvpiIADGG------i~~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 201 AVIECADAAHGLGGQIVSDGG------CTVPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred HHHHHHHHHHHcCCCEEecCC------cccccHHHHHHHcCCCEEEeC
Confidence 367888999999999999974 112223 34567889988753
No 419
>KOG1769|consensus
Probab=67.77 E-value=17 Score=21.90 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHhcCC-----cEEEecccchHHhhhCCCCHHHH-hcCCcEEEEcCCCC
Q psy15462 7 LKARCQEHNI-----PVHMDGARVFNAASYLGLPLAEV-CASVDTVMFCLSKG 53 (71)
Q Consensus 7 i~~~a~~~gi-----~l~~DgAr~~~~~~~~~~~~~~~-~~~~D~v~~s~~K~ 53 (71)
+..+|++.|+ .+..||.|+- ...++.++ .+.=|.+.+...-.
T Consensus 47 M~aYc~r~Gl~~~s~RFlFdG~rI~-----~~~TP~~L~mEd~D~Iev~~~q~ 94 (99)
T KOG1769|consen 47 MKAYCERQGLSMNSLRFLFDGQRIR-----ETHTPADLEMEDGDEIEVVQEQT 94 (99)
T ss_pred HHHHHHHcCCccceEEEEECCcCcC-----CCCChhhhCCcCCcEEEEEeecc
Confidence 4568888886 6899999977 56678777 46667777665553
No 420
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=67.31 E-value=8.9 Score=25.15 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=26.1
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFC 49 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s 49 (71)
.+.++.+.|+++|+++.+|-...+.. ..+.++...+|++.++
T Consensus 126 ~~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~~~~~~~d~~~~~ 167 (264)
T cd01940 126 HLEKALQALVGAGALISFDFSDRWDD-----DYLQLVCPYVDFAFFS 167 (264)
T ss_pred HHHHHHHHHHHcCCEEEEcCcccCCH-----HHHHhhcccCCEEEec
Confidence 46788899999999999994321211 0123344556666555
No 421
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=67.02 E-value=4.9 Score=28.83 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCcEEEe--cccchHHhhhCCCC
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVFNAASYLGLP 35 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~~~~~~~~~~ 35 (71)
.+|.++|+|||||++-| =||..-.....|..
T Consensus 291 ~~Ir~iA~e~~VPiven~pLAR~Ly~~~evg~~ 323 (342)
T TIGR01404 291 LAVRAYAEEAGIPVVRDIPLARQLYRTARVGQY 323 (342)
T ss_pred HHHHHHHHHcCCCEeeCHHHHHHHHHcCCCCCc
Confidence 57999999999999999 56655433334433
No 422
>PLN02765 pyruvate kinase
Probab=67.02 E-value=14 Score=28.32 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-------hcCCcEEEEcCC
Q psy15462 5 PQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-------CASVDTVMFCLS 51 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-------~~~~D~v~~s~~ 51 (71)
++|.+.|+++|.|++. .++.+.+.....|-+ |+ ..|+|.+.+|+-
T Consensus 296 K~iI~~c~~~gKPVI~--TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgE 348 (526)
T PLN02765 296 KAALYKCNMAGKPAVV--TRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAE 348 (526)
T ss_pred HHHHHHHHHhCCCeEE--ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecch
Confidence 6788999999999996 999998888777643 32 489999999853
No 423
>PRK14706 glycogen branching enzyme; Provisional
Probab=66.46 E-value=4.3 Score=31.37 Aligned_cols=22 Identities=18% Similarity=-0.046 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+.||++||.|++|-.
T Consensus 217 ~~~~~lv~~~H~~gi~VilD~v 238 (639)
T PRK14706 217 EDFKYLVNHLHGLGIGVILDWV 238 (639)
T ss_pred HHHHHHHHHHHHCCCEEEEEec
Confidence 5789999999999999999944
No 424
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=66.43 E-value=8.8 Score=28.76 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=28.7
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH-HHHhcCCcEEEEcC
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL-AEVCASVDTVMFCL 50 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~-~~~~~~~D~v~~s~ 50 (71)
.+.++++.|+++|+|++-||- +. .+..+ +-+..+||.+.++.
T Consensus 332 ai~~~~~~~~~~~v~vIadGG-i~-----~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 332 AVYHVARYARERGVPCIADGG-IK-----NSGDICKALALGADCVMLGS 374 (495)
T ss_pred HHHHHHHHHhhcCCeEEecCC-CC-----CHHHHHHHHHcCCCEEEECc
Confidence 356788999999999999974 11 22222 23458889887654
No 425
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=66.22 E-value=12 Score=26.50 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=29.3
Q ss_pred cHHHHHHHHHhcCCcEEEe--cccchHHhhhCCCCHHHHhcCCcEEEEcCC
Q psy15462 3 IDPQLKARCQEHNIPVHMD--GARVFNAASYLGLPLAEVCASVDTVMFCLS 51 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~D--gAr~~~~~~~~~~~~~~~~~~~D~v~~s~~ 51 (71)
.+.++.+.++++|+.+.++ |. .. ..++++..+.|.+.+|.+
T Consensus 146 ~l~eli~~~k~~Gi~~~L~TNG~--~~------e~l~~L~~~~d~i~VSLd 188 (322)
T PRK13762 146 YLPELIEEFHKRGFTTFLVTNGT--RP------DVLEKLEEEPTQLYVSLD 188 (322)
T ss_pred hHHHHHHHHHHcCCCEEEECCCC--CH------HHHHHHHhcCCEEEEEcc
Confidence 4789999999999999999 53 11 123445456788887765
No 426
>PF05670 DUF814: Domain of unknown function (DUF814); InterPro: IPR008532 This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from O34693 from SWISSPROT where the N-terminal region is involved in this activity []. Hence the activity of this C-terminal domain is unknown. This domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Probab=66.07 E-value=1.2 Score=25.71 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=33.3
Q ss_pred HHH-HHHHHhcCCcEEEe---cccchHHhhhCCCCHHHHhcCCcEEEEcCCC-CCccceeEEEEecccccc
Q psy15462 5 PQL-KARCQEHNIPVHMD---GARVFNAASYLGLPLAEVCASVDTVMFCLSK-GLGAPVGSILAGPEEFIQ 70 (71)
Q Consensus 5 ~~i-~~~a~~~gi~l~~D---gAr~~~~~~~~~~~~~~~~~~~D~v~~s~~K-~lg~p~gg~l~g~~~~i~ 70 (71)
++| .++++..++|+|.| |+.+.-.......+...+ ..|=.++.+.|| +=..+...+.+.+.+.+.
T Consensus 20 e~L~~k~~~~~D~wfH~~~~pg~hvil~~~~~~~~~~~l-~~AA~laa~~Ska~~~~~~v~V~yt~~k~v~ 89 (90)
T PF05670_consen 20 EMLTKKYARPNDLWFHADDFPGPHVILRNNPGDEPPPTL-QEAAQLAASYSKAWKKGEKVEVDYTQGKYVK 89 (90)
T ss_pred HHHHHHhhhhcceeEeccCCCCCEEEEECCCCccchHHH-HHHHHHHHHhCHhhccCCCeEEEEeehHhcc
Confidence 355 78899999999999 444331111111111112 222233444555 444455556666555544
No 427
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=65.90 E-value=4.8 Score=31.33 Aligned_cols=23 Identities=17% Similarity=0.007 Sum_probs=20.4
Q ss_pred CCcHHHHHHHHHhcCCcEEEecc
Q psy15462 1 MSIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 1 ~~~l~~i~~~a~~~gi~l~~DgA 23 (71)
+++++++.+-||++||-|++|--
T Consensus 213 Pedfk~fVD~aH~~GIgViLD~V 235 (628)
T COG0296 213 PEDFKALVDAAHQAGIGVILDWV 235 (628)
T ss_pred HHHHHHHHHHHHHcCCEEEEEec
Confidence 36789999999999999999954
No 428
>PRK06739 pyruvate kinase; Validated
Probab=65.74 E-value=16 Score=26.51 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-------hcCCcEEEEcCC
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-------CASVDTVMFCLS 51 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-------~~~~D~v~~s~~ 51 (71)
-++|.+.|+++|.|+++ +.++++.+.....|-+ |+ ..|+|.+.+|+-
T Consensus 253 Qk~Ii~~c~~~gkPvIv-ATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~E 307 (352)
T PRK06739 253 QKMMIQECNRTNTYVIT-ATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAE 307 (352)
T ss_pred HHHHHHHHHHhCCCEEE-EcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEccc
Confidence 36789999999999987 6688888887776643 32 489999999964
No 429
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=65.70 E-value=5.8 Score=29.25 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCcEEEec
Q psy15462 4 DPQLKARCQEHNIPVHMDG 22 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~Dg 22 (71)
+.++.+.|+++|+++.+|.
T Consensus 243 ~~~~~~~Ak~~g~~V~~Dp 261 (470)
T PLN02341 243 IASAVDYAIDVGTAVFFDP 261 (470)
T ss_pred HHHHHHHHHHcCCEEEEeC
Confidence 5678889999999999995
No 430
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.50 E-value=4.7 Score=27.28 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.3
Q ss_pred CcHHHHHHHHHhcCCcEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMD 21 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D 21 (71)
++++++...|+++|||++.-
T Consensus 58 ~Ni~~Lr~~~~~~giPVvyT 77 (218)
T COG1535 58 ANIAKLRIWCKQAGIPVVYT 77 (218)
T ss_pred HHHHHHHHHHHHcCCcEEEE
Confidence 57899999999999999987
No 431
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=65.41 E-value=5.5 Score=26.81 Aligned_cols=20 Identities=25% Similarity=0.652 Sum_probs=17.5
Q ss_pred cHHHHHHHHHhcCCcEEEec
Q psy15462 3 IDPQLKARCQEHNIPVHMDG 22 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~Dg 22 (71)
..+++.++|++|++++++++
T Consensus 53 ~a~~~~~lc~~~~v~liINd 72 (211)
T COG0352 53 LAEKLRALCQKYGVPLIIND 72 (211)
T ss_pred HHHHHHHHHHHhCCeEEecC
Confidence 35789999999999999984
No 432
>KOG2550|consensus
Probab=64.90 E-value=7.3 Score=29.37 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEE
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMF 48 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~ 48 (71)
+-+++++|+++|+|++=||- +-| .|.-.+.+..++++|.+
T Consensus 343 Vy~va~~A~q~gvpviADGG-iq~----~Ghi~KAl~lGAstVMm 382 (503)
T KOG2550|consen 343 VYKVAEFANQFGVPCIADGG-IQN----VGHVVKALGLGASTVMM 382 (503)
T ss_pred hhhHHHHHHhcCCceeecCC-cCc----cchhHhhhhcCchhhee
Confidence 56789999999999999964 111 23223445566765543
No 433
>PRK06298 type III secretion system protein; Validated
Probab=64.73 E-value=5.8 Score=28.69 Aligned_cols=31 Identities=10% Similarity=0.002 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCcEEEe--cccchHHhhhCCCC
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVFNAASYLGLP 35 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~~~~~~~~~~ 35 (71)
.+|.++|++||||++-| =||..-.....|..
T Consensus 293 ~~Ir~iA~e~~VPiven~pLARaLy~~~evg~~ 325 (356)
T PRK06298 293 KRIIAEAEKYGVPIMRNVPLAHQLLDEGKELKF 325 (356)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHHcCCCCCc
Confidence 57999999999999999 55555333334433
No 434
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=64.54 E-value=13 Score=25.59 Aligned_cols=46 Identities=20% Similarity=0.180 Sum_probs=32.7
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh-----cCCcEEEEcC
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC-----ASVDTVMFCL 50 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~-----~~~D~v~~s~ 50 (71)
.++|..++||+|||++..-|. +++.+...+ .+.+|. -++|.+=+|-
T Consensus 42 ~l~eki~la~~~~V~v~~GGt-l~E~~~~q~-~~~~Yl~~~k~lGf~~IEiS~ 92 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYPGGT-LFEIAHSKG-KFDEYLNECDELGFEAVEISD 92 (237)
T ss_pred HHHHHHHHHHHcCCeEeCCcc-HHHHHHHhh-hHHHHHHHHHHcCCCEEEEcC
Confidence 389999999999999999974 566665443 444431 4667666653
No 435
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=63.88 E-value=13 Score=27.44 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=27.6
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH-HHHhcCCcEEEEc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL-AEVCASVDTVMFC 49 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~-~~~~~~~D~v~~s 49 (71)
.+.++++.|+++++|++-||- +. .+..+ +-+..+||.+.++
T Consensus 315 ~i~~~~~~~~~~~vpviadGG-i~-----~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 315 AVYDVAEYAAQSGIPVIADGG-IR-----YSGDIVKALAAGADAVMLG 356 (450)
T ss_pred HHHHHHHHHhhcCCeEEEeCC-CC-----CHHHHHHHHHcCCCEEEEC
Confidence 357788889999999999974 11 22223 2345788877654
No 436
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=63.77 E-value=6.9 Score=27.40 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=16.1
Q ss_pred cHHHHHHHHHhcCCcEEEecc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgA 23 (71)
.++++..+|++.|||+++|--
T Consensus 191 t~~d~L~ic~~~giP~VfD~h 211 (275)
T PF03851_consen 191 TVEDVLPICEKLGIPMVFDYH 211 (275)
T ss_dssp -HHHHHHHHHHHT--EEEEHH
T ss_pred CHHHHHHHHHHhCCCEEEEhH
Confidence 368899999999999999954
No 437
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=63.09 E-value=21 Score=23.62 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=17.5
Q ss_pred cHHHHHHHHHhcCCcEEEecc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgA 23 (71)
.+.++.+.++++|+++.+|-.
T Consensus 143 ~~~~~~~~a~~~g~~v~~D~~ 163 (292)
T cd01174 143 TVLAALRAARRAGVTVILNPA 163 (292)
T ss_pred HHHHHHHHHHhcCCEEEEeCC
Confidence 356788899999999999954
No 438
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=62.92 E-value=9.5 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=17.2
Q ss_pred CcHHHHHHHHHhcCCcEE--Eecc
Q psy15462 2 SIDPQLKARCQEHNIPVH--MDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~--~DgA 23 (71)
|-+.|+.+.||++||.+. +|-.
T Consensus 44 Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEEeee
Confidence 568999999999999665 4543
No 439
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=62.73 E-value=18 Score=25.01 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=18.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
+.++.+.+.|++.|+++.-|-.
T Consensus 66 ~gl~~L~~~~~~~Gl~~~Tev~ 87 (250)
T PRK13397 66 QGIRYLHEVCQEFGLLSVSEIM 87 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEeeC
Confidence 3578899999999999998854
No 440
>PLN03244 alpha-amylase; Provisional
Probab=62.73 E-value=5.6 Score=32.11 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|-.
T Consensus 441 eDLK~LVD~aH~~GI~VILDvV 462 (872)
T PLN03244 441 DDFKRLVDEAHGLGLLVFLDIV 462 (872)
T ss_pred HHHHHHHHHHHHCCCEEEEEec
Confidence 5789999999999999999944
No 441
>PRK09108 type III secretion system protein HrcU; Validated
Probab=62.51 E-value=7.4 Score=28.10 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCcEEEe--cccch
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVF 26 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~ 26 (71)
.+|.++|++||||++-| =||..
T Consensus 294 ~~Ir~~A~e~~VPvven~pLARaL 317 (353)
T PRK09108 294 LALRRHAHALGIPIVGNPPVARAL 317 (353)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHH
Confidence 57999999999999999 55544
No 442
>KOG1402|consensus
Probab=62.46 E-value=13 Score=27.44 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=34.9
Q ss_pred CcHHHHHHHHHhcCCcEEEeccc--chHHhhhCCCCHHHHhcCCcEEEEcCCCCCc-cceeEEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGAR--VFNAASYLGLPLAEVCASVDTVMFCLSKGLG-APVGSILAGP 65 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr--~~~~~~~~~~~~~~~~~~~D~v~~s~~K~lg-~p~gg~l~g~ 65 (71)
.++.+++++|++|++.++.|=-+ +...--.+.+...+ -.-|++.+.--=..| -|+.++|+.+
T Consensus 228 GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~en--v~PDivilgKalSGG~~Pvsavl~~~ 292 (427)
T KOG1402|consen 228 GYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYEN--VRPDIVILGKALSGGVYPVSAVLADD 292 (427)
T ss_pred hhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhh--cCCCeEEEeccccCCeeeeEEEEecH
Confidence 47899999999999999999321 11100011122223 245888775322211 1567676644
No 443
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=62.21 E-value=7 Score=28.58 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCcEEEe--cccchHHhhhCCCC
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVFNAASYLGLP 35 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~~~~~~~~~~ 35 (71)
.+|.++|++||||++-| =||..-.....|..
T Consensus 299 ~~Ir~~A~e~~VPiven~pLARaLy~~~evg~~ 331 (386)
T PRK12468 299 LRIRELGAEHRIPLLEAPPLARALFRHSEVGQH 331 (386)
T ss_pred HHHHHHHHHcCCcEEeCHHHHHHHHHhCCCCCC
Confidence 57999999999999999 66665444444543
No 444
>PRK12568 glycogen branching enzyme; Provisional
Probab=61.82 E-value=6 Score=31.30 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHhcCCcEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDG 22 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~Dg 22 (71)
++++++.+-||++||.|++|-
T Consensus 319 ~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 319 DGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 578999999999999999994
No 445
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=61.57 E-value=19 Score=25.66 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.2
Q ss_pred cHHHHHHHHHhcCCcEEEecc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgA 23 (71)
.+.++.+.|+++|+++.+|-+
T Consensus 192 ~~~~~~~~A~~~g~~v~lD~s 212 (367)
T PLN02379 192 VIEAAIRLAKQEGLSVSLDLA 212 (367)
T ss_pred HHHHHHHHHHHcCCEEEEecc
Confidence 467888999999999999965
No 446
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=61.25 E-value=6.9 Score=19.68 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.0
Q ss_pred cHHHHHHHHHhcCCc
Q psy15462 3 IDPQLKARCQEHNIP 17 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~ 17 (71)
.+.++.++|+++||+
T Consensus 6 ~~~eL~~iAk~lgI~ 20 (43)
T PF07498_consen 6 TLSELREIAKELGIE 20 (43)
T ss_dssp -HHHHHHHHHCTT-T
T ss_pred CHHHHHHHHHHcCCC
Confidence 578999999999987
No 447
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=61.10 E-value=6.6 Score=31.75 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhh
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAAS 30 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~ 30 (71)
.+++++.+-||++||.|++|.. +|...
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDVV--yNHt~ 430 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDVV--YNHTN 430 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEee--ccccc
Confidence 4789999999999999999965 44433
No 448
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=61.10 E-value=21 Score=23.73 Aligned_cols=19 Identities=11% Similarity=0.156 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCcEEEec
Q psy15462 4 DPQLKARCQEHNIPVHMDG 22 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~Dg 22 (71)
+.++.+.++++|+++.+|-
T Consensus 139 ~~~~~~~~~~~~~~v~~D~ 157 (293)
T TIGR02152 139 VLEAAKIAKKHGVKVILNP 157 (293)
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 5678899999999999994
No 449
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=61.09 E-value=31 Score=20.07 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCcEEEecccch
Q psy15462 5 PQLKARCQEHNIPVHMDGARVF 26 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~DgAr~~ 26 (71)
..+.+.++++|+++.++...+.
T Consensus 21 ~k~~~~~~~~gi~~~v~a~~~~ 42 (95)
T TIGR00853 21 NKMNKAAEEYGVPVKIAAGSYG 42 (95)
T ss_pred HHHHHHHHHCCCcEEEEEecHH
Confidence 5788999999999999977544
No 450
>PRK08156 type III secretion system protein SpaS; Validated
Probab=60.98 E-value=7.8 Score=28.14 Aligned_cols=31 Identities=19% Similarity=0.076 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCcEEEe--cccchHHhhhCCCC
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVFNAASYLGLP 35 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~~~~~~~~~~ 35 (71)
.+|.++|++||||++-| =||..-.....|..
T Consensus 287 ~~IreiA~e~~VPiven~pLARaLY~~vevg~~ 319 (361)
T PRK08156 287 LAVRAYAEKVGVPVVRDIKLARRLYKTHRRYSF 319 (361)
T ss_pred HHHHHHHHHCCCCEeeCHHHHHHHHHhCCCCCc
Confidence 57999999999999999 56655433344544
No 451
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=60.59 E-value=11 Score=25.69 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=20.4
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHH
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNA 28 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~ 28 (71)
..+++.++|++||+|+ +.++-+++.
T Consensus 192 ~~~~~~~fA~~~~l~~-isi~dli~~ 216 (219)
T PRK05773 192 SKEKAKKIAKNLGFPL-VEGKEIFKE 216 (219)
T ss_pred CHHHHHHHHHHcCCcE-EEHHHHHHH
Confidence 4678999999999999 778766653
No 452
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=60.56 E-value=23 Score=26.69 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-------hcCCcEEEEcCCC
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-------CASVDTVMFCLSK 52 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-------~~~~D~v~~s~~K 52 (71)
.++|.+.|+++|.|+++ +.++.+.+.....|-+ |+ ..++|-+..|+-=
T Consensus 261 qk~ii~~~~~~gkpvi~-ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ET 316 (480)
T cd00288 261 QKMLIAKCNLAGKPVIT-ATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGET 316 (480)
T ss_pred HHHHHHHHHHcCCCEEE-EchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechh
Confidence 57899999999999887 5588887777666643 32 3789999887643
No 453
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=59.98 E-value=8.4 Score=27.88 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCcEEEe--cccchH
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVFN 27 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~~ 27 (71)
.+|.++|++||||++-| =||..-
T Consensus 299 ~~i~~~A~~~~vpi~~~~~LAr~Ly 323 (359)
T PRK05702 299 LKIREIAREHNVPIVENPPLARALY 323 (359)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHH
Confidence 57999999999999999 555443
No 454
>PRK09206 pyruvate kinase; Provisional
Probab=59.87 E-value=23 Score=26.62 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-------hcCCcEEEEcCCC
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-------CASVDTVMFCLSK 52 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-------~~~~D~v~~s~~K 52 (71)
.++|.+.|+++|.|+++ +.++++.+.....|-+ |+ ..|+|-+.+|+-=
T Consensus 260 qk~ii~~~~~~gkpvI~-ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ET 315 (470)
T PRK09206 260 QKMMIEKCNRARKVVIT-ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGES 315 (470)
T ss_pred HHHHHHHHHHcCCCEEE-EchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechh
Confidence 57889999999999988 5688888887766643 32 4889999988743
No 455
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=59.83 E-value=8.2 Score=26.08 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=17.4
Q ss_pred CcHHHHHHHHHhcCCcEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMD 21 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D 21 (71)
++++++.+.|+++|+|++++
T Consensus 123 ~~~~~i~~~~~~~g~~liv~ 142 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAM 142 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEE
Confidence 35788999999999999994
No 456
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=59.67 E-value=21 Score=24.46 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
+.++.+.++|+++|+++..+-.
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t~~~ 97 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVTEVM 97 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEeeC
Confidence 3578899999999999998854
No 457
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=59.63 E-value=18 Score=24.23 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH--hcCCcEEEEcCCCCCcc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV--CASVDTVMFCLSKGLGA 56 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~--~~~~D~v~~s~~K~lg~ 56 (71)
++++.+.+++++.++|+..|.. +. .-..++++ ...+|.+.+...|. |+
T Consensus 167 ~d~~~~~~l~~~~~ipia~dE~-~~-----~~~~~~~~i~~~~~d~v~~k~~~~-GG 216 (265)
T cd03315 167 DDLEGRAALARATDTPIMADES-AF-----TPHDAFRELALGAADAVNIKTAKT-GG 216 (265)
T ss_pred ccHHHHHHHHhhCCCCEEECCC-CC-----CHHHHHHHHHhCCCCEEEEecccc-cC
Confidence 3467788899999999999976 11 11113333 25689999999994 44
No 458
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=59.48 E-value=10 Score=28.53 Aligned_cols=47 Identities=4% Similarity=-0.063 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCcEEEecc-c--chHHhhhCCCCHHHHhcCCcEEEEcC
Q psy15462 4 DPQLKARCQEHNIPVHMDGA-R--VFNAASYLGLPLAEVCASVDTVMFCL 50 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgA-r--~~~~~~~~~~~~~~~~~~~D~v~~s~ 50 (71)
+.++.+.|+++|+.+.+|-. | +|.........+.++...+|++.+|-
T Consensus 286 ~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~Se 335 (496)
T PLN02543 286 LFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSR 335 (496)
T ss_pred HHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecH
Confidence 56678899999999999943 3 33210000011344567788887764
No 459
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=59.47 E-value=8.2 Score=27.81 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCcEEEe--cccch
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVF 26 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~ 26 (71)
.+|.++|++||||++-| =||..
T Consensus 292 ~~I~~~A~~~~vPi~~~~~LAr~L 315 (347)
T TIGR00328 292 LKIKEIARENNVPIVENPPLARAL 315 (347)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHH
Confidence 57999999999999999 45544
No 460
>PRK08227 autoinducer 2 aldolase; Validated
Probab=59.43 E-value=6.7 Score=27.29 Aligned_cols=19 Identities=21% Similarity=0.029 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHhcCCcEEE
Q psy15462 2 SIDPQLKARCQEHNIPVHM 20 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~ 20 (71)
+++.++++-|+++|+|++.
T Consensus 127 ~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 127 KNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred HHHHHHHHHHHHhCCcEEE
Confidence 4678899999999999996
No 461
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=59.04 E-value=18 Score=25.77 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HH-------hcCCcEEEEcC
Q psy15462 5 PQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EV-------CASVDTVMFCL 50 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~-------~~~~D~v~~s~ 50 (71)
++|.+.|+++|.|+++ +.++++.+...+.|-+ |+ ..++|.+..|+
T Consensus 264 k~ii~~~~~~~kpvi~-ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ 316 (348)
T PF00224_consen 264 KRIIKKCNAAGKPVIV-ATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSG 316 (348)
T ss_dssp HHHHHHHHHHT-EEEE-ESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESH
T ss_pred HHHHHHHHHhCCCeee-hhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecC
Confidence 6789999999999998 5588888777776643 33 37999999983
No 462
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=58.90 E-value=12 Score=25.54 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.5
Q ss_pred cHHHHHHHHHhcCCcEEEeccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGAR 24 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr 24 (71)
...++.++++++++.+++|+++
T Consensus 54 ~~~~l~~~l~~~~i~~vIDATH 75 (249)
T PF02571_consen 54 DEEGLAEFLRENGIDAVIDATH 75 (249)
T ss_pred CHHHHHHHHHhCCCcEEEECCC
Confidence 4578999999999999999775
No 463
>PTZ00247 adenosine kinase; Provisional
Probab=58.73 E-value=16 Score=25.37 Aligned_cols=46 Identities=15% Similarity=0.016 Sum_probs=27.4
Q ss_pred cHHHHHHHHHhcCCcEEEe-cccchHHhhhCCCCHHHHhcCCcEEEEcC
Q psy15462 3 IDPQLKARCQEHNIPVHMD-GARVFNAASYLGLPLAEVCASVDTVMFCL 50 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~D-gAr~~~~~~~~~~~~~~~~~~~D~v~~s~ 50 (71)
.+.++.+.|+++|+++.+| ++..+... ....+.++..++|++..+-
T Consensus 176 ~~~~~~~~a~~~g~~v~~d~~~~~~~~~--~~~~~~~~l~~~Dil~~N~ 222 (345)
T PTZ00247 176 NVLQVAKHARESGKLFCLNLSAPFISQF--FFERLLQVLPYVDILFGNE 222 (345)
T ss_pred HHHHHHHHHHHcCCEEEEECCcHHHHHH--HHHHHHHHHhhCCEEEeCH
Confidence 3567889999999999999 43211100 0011345556667666554
No 464
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=58.57 E-value=24 Score=24.37 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=29.4
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHh-----cCCcEEEEcC
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVC-----ASVDTVMFCL 50 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~-----~~~D~v~~s~ 50 (71)
.+++..+++|+|||.+..-|. +++-+.. .-.+.++. -++|.+=+|-
T Consensus 55 ~l~eki~l~~~~gV~v~~GGt-l~E~a~~-q~~~~~yl~~~k~lGf~~IEiSd 105 (244)
T PF02679_consen 55 ILKEKIDLAHSHGVYVYPGGT-LFEVAYQ-QGKFDEYLEECKELGFDAIEISD 105 (244)
T ss_dssp HHHHHHHHHHCTT-EEEE-HH-HHHHHHH-TT-HHHHHHHHHHCT-SEEEE--
T ss_pred HHHHHHHHHHHcCCeEeCCcH-HHHHHHh-cChHHHHHHHHHHcCCCEEEecC
Confidence 389999999999999999996 5666555 33555542 5677776663
No 465
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=58.47 E-value=8.4 Score=29.68 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCcEEEe--cccchHHhhhCCCC
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVFNAASYLGLP 35 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~~~~~~~~~~ 35 (71)
.+|.++|+|||||++-| =||..-.....|..
T Consensus 555 ~~Ir~~A~e~~VPive~~~LAR~Ly~~~evg~~ 587 (609)
T PRK12772 555 LKIKEIAKENDVPIIENKPLARLIYKKVEIDQE 587 (609)
T ss_pred HHHHHHHHHCCCcEEeCHHHHHHHHHcCCCCCC
Confidence 57999999999999999 55655433334433
No 466
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=58.44 E-value=17 Score=27.42 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=28.3
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-HHhcCCcEEEEc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-EVCASVDTVMFC 49 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~~~~~~D~v~~s 49 (71)
.+..+.+++++.++|++.||- ...+..+. -+..+||.+.+.
T Consensus 339 ~i~~~~~~~~~~~vpVIadGG------I~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 339 AVYKVASIAAQHGVPVIADGG------ISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred HHHHHHHHHHhcCCeEEEeCC------CCCHHHHHHHHHcCCCEEEEc
Confidence 466788999999999999975 11232332 346788877654
No 467
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=58.35 E-value=8.9 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.2
Q ss_pred CcHHHHHHHHHhcCCcEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMD 21 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D 21 (71)
++++++.+.|+++|+|+.+-
T Consensus 126 ~~~~~v~~~~~~~g~pl~vi 145 (267)
T PRK07226 126 EDLGEVAEECEEWGMPLLAM 145 (267)
T ss_pred HHHHHHHHHHHHcCCcEEEE
Confidence 46789999999999999873
No 468
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=58.14 E-value=12 Score=27.99 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH-HHHhcCCcEEEEc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL-AEVCASVDTVMFC 49 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~-~~~~~~~D~v~~s 49 (71)
.+.++++.|+++++|++-||- +. +...+ +-+..++|.+.++
T Consensus 318 av~~~~~~~~~~~~~via~gg-i~-----~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 318 AVLECAAAARELGAHVWADGG-VR-----HPRDVALALAAGASNVMIG 359 (479)
T ss_pred HHHHHHHHHHhcCCcEEecCC-CC-----CHHHHHHHHHcCCCeeecc
Confidence 356777788899999999985 11 21122 2345778877654
No 469
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=58.08 E-value=10 Score=25.14 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=18.9
Q ss_pred cHHHHHHHHHhcCCcEEEecccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARV 25 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~ 25 (71)
...++.+.++++++|+++|+..+
T Consensus 92 ~~~~i~~~~~~~~~pvVlDa~~~ 114 (254)
T cd01171 92 EAAEILEKALAKDKPLVLDADAL 114 (254)
T ss_pred HHHHHHHHHHhcCCCEEEEcHHH
Confidence 46788889999999999995543
No 470
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=57.98 E-value=7.4 Score=32.18 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=19.7
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|+||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecc
Confidence 4689999999999999999954
No 471
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=57.59 E-value=8.3 Score=28.19 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCcEEEe--cccch
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVF 26 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~ 26 (71)
-.|.++|+|||||++-| =||-.
T Consensus 299 lkIreiA~e~~Ipi~enppLARaL 322 (363)
T COG1377 299 LKIREIAKEHGIPIIENPPLARAL 322 (363)
T ss_pred HHHHHHHHHcCCceecChHHHHHH
Confidence 36899999999999999 55544
No 472
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=57.46 E-value=19 Score=24.01 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHHhcCCcEEEEcCC
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLS 51 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~~~~~D~v~~s~~ 51 (71)
+.++.+.||+.|+.+.+|=++.++ ...+.++...+|.+.++..
T Consensus 56 l~~l~~~~k~~gi~~~leTnG~~~-----~~~~~~l~~~~D~~l~DiK 98 (213)
T PRK10076 56 ATRFLQRLRLWGVSCAIETAGDAP-----ASKLLPLAKLCDEVLFDLK 98 (213)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCC-----HHHHHHHHHhcCEEEEeec
Confidence 678999999999999999443221 1124556677887777653
No 473
>PLN02960 alpha-amylase
Probab=57.06 E-value=8 Score=31.38 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|-.
T Consensus 466 ~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 466 DDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred HHHHHHHHHHHHCCCEEEEEec
Confidence 5789999999999999999954
No 474
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=56.88 E-value=9.4 Score=31.76 Aligned_cols=22 Identities=23% Similarity=0.086 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.|++|..
T Consensus 247 ~efk~lV~~~H~~GI~VILDvV 268 (1221)
T PRK14510 247 EEFAQAIKEAQSAGIAVILDVV 268 (1221)
T ss_pred HHHHHHHHHHHHCCCEEEEEEc
Confidence 5789999999999999999965
No 475
>PRK14705 glycogen branching enzyme; Provisional
Probab=56.75 E-value=8 Score=32.33 Aligned_cols=21 Identities=19% Similarity=0.003 Sum_probs=19.4
Q ss_pred CcHHHHHHHHHhcCCcEEEec
Q psy15462 2 SIDPQLKARCQEHNIPVHMDG 22 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~Dg 22 (71)
++++++.+-||++||.|++|-
T Consensus 815 ~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 815 DEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 578999999999999999993
No 476
>KOG0630|consensus
Probab=56.51 E-value=8.1 Score=30.14 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHhcC-CcEEEecccchHHhhhC-CCCHHHHhcCCcEEEEcCCCCCccceeEEE
Q psy15462 2 SIDPQLKARCQEHN-IPVHMDGARVFNAASYL-GLPLAEVCASVDTVMFCLSKGLGAPVGSIL 62 (71)
Q Consensus 2 ~~l~~i~~~a~~~g-i~l~~DgAr~~~~~~~~-~~~~~~~~~~~D~v~~s~~K~lg~p~gg~l 62 (71)
+.+-+|.++|++|+ .|+|.-|-.++.-.... +-.+-...+..|+.++..--|+|-|..-++
T Consensus 309 Dmi~kildi~eahakfWLHasGhaiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV 371 (838)
T KOG0630|consen 309 DMILKILDICEAHAKFWLHASGHAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIV 371 (838)
T ss_pred HHHHHHHHHHHHhhheeEeeccchhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCceE
Confidence 56788999999998 99999987554211110 011223346789999999999999976544
No 477
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=56.34 E-value=13 Score=17.84 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCcE
Q psy15462 4 DPQLKARCQEHNIPV 18 (71)
Q Consensus 4 l~~i~~~a~~~gi~l 18 (71)
+.++.++|+++|++.
T Consensus 6 v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 6 VAELKEELKERGLST 20 (35)
T ss_dssp HHHHHHHHHHTTS-S
T ss_pred HHHHHHHHHHCCCCC
Confidence 578999999999863
No 478
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=56.17 E-value=18 Score=26.44 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCcEEEeccc
Q psy15462 4 DPQLKARCQEHNIPVHMDGAR 24 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr 24 (71)
+.++.+.|+++|+++.+|.+-
T Consensus 244 ~~~~~~~ak~~g~~v~~d~s~ 264 (426)
T PLN02813 244 IAQACEEAHRAGALVAVTASD 264 (426)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 567888999999999999663
No 479
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=56.03 E-value=17 Score=24.86 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.5
Q ss_pred cHHHHHHHHHhcCCcEEEeccc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGAR 24 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr 24 (71)
.-+++.++++++++.+++|+++
T Consensus 53 ~~~~l~~~l~~~~i~~VIDATH 74 (248)
T PRK08057 53 GAEGLAAYLREEGIDLVIDATH 74 (248)
T ss_pred CHHHHHHHHHHCCCCEEEECCC
Confidence 4578999999999999999875
No 480
>PRK06852 aldolase; Validated
Probab=55.99 E-value=8.2 Score=27.45 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.7
Q ss_pred CcHHHHHHHHHhcCCcEEE
Q psy15462 2 SIDPQLKARCQEHNIPVHM 20 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~ 20 (71)
+++.++++-|+++|+|++.
T Consensus 154 ~~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 154 SEAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred HHHHHHHHHHHHhCCcEEE
Confidence 4678899999999999986
No 481
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=55.84 E-value=8.9 Score=28.36 Aligned_cols=56 Identities=21% Similarity=0.134 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecc------cchHHhhhCCCCHHHHh-cCC-cEEEEcCCCCCccc---eeEE
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA------RVFNAASYLGLPLAEVC-ASV-DTVMFCLSKGLGAP---VGSI 61 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA------r~~~~~~~~~~~~~~~~-~~~-D~v~~s~~K~lg~p---~gg~ 61 (71)
+.+++|.++-+++|+.-++|=| ++-+.++ .++.+. .+- =+|+.|++|.+|.= .|++
T Consensus 192 ~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~----~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~ 258 (396)
T COG1448 192 EQWQELADLIKERGLIPFFDIAYQGFADGLEEDAY----ALRLFAEVGPELLVASSFSKNFGLYGERVGAL 258 (396)
T ss_pred HHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHH----HHHHHHHhCCcEEEEehhhhhhhhhhhcccee
Confidence 4678999999999999999943 2111111 123222 122 48999999977643 3653
No 482
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=55.82 E-value=17 Score=26.72 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=29.8
Q ss_pred CcHHHHHHHHHhcCCcEEEe---cccchHHhhhCCCCHHHHhc-CCcEEEEcCC
Q psy15462 2 SIDPQLKARCQEHNIPVHMD---GARVFNAASYLGLPLAEVCA-SVDTVMFCLS 51 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D---gAr~~~~~~~~~~~~~~~~~-~~D~v~~s~~ 51 (71)
..+.++.+.++++|++++++ |..+.+ .....++.+ +.|.+.+|.+
T Consensus 89 ~~l~eLl~~lk~~gi~taI~~TnG~~l~~-----~e~~~~L~~~gld~v~iSvk 137 (404)
T TIGR03278 89 PELEELTKGLSDLGLPIHLGYTSGKGFDD-----PEIAEFLIDNGVREVSFTVF 137 (404)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCcccCC-----HHHHHHHHHcCCCEEEEecc
Confidence 35789999999999999986 332211 011344544 4899988865
No 483
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=55.42 E-value=8.3 Score=26.91 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
+.+++|++.|+++|+.+.+|.=
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE 113 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAE 113 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE---
T ss_pred HHHHHHHHHhhcCCcEEEEcCC
Confidence 3578999999999999999954
No 484
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=55.39 E-value=11 Score=27.06 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCcEEEe--cccchHHhhhCCCCH
Q psy15462 5 PQLKARCQEHNIPVHMD--GARVFNAASYLGLPL 36 (71)
Q Consensus 5 ~~i~~~a~~~gi~l~~D--gAr~~~~~~~~~~~~ 36 (71)
.+|.++|++||||++-| =||-.-.....|..+
T Consensus 294 ~~Ir~~A~~~~VPiven~pLARaLy~~~~~g~~I 327 (343)
T PF01312_consen 294 LRIREIAREHGVPIVENPPLARALYRTVEVGQEI 327 (343)
T ss_dssp HHHHHHHHHHT--EEE-HHHHHHHHHHS-TTSB-
T ss_pred HHHHHHHHHcCCCeeeCHHHHHHHHhcCCCCCcC
Confidence 57999999999999999 566554444345443
No 485
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=55.36 E-value=11 Score=27.34 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=17.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
+.++++.++|+++|+.+++|=+
T Consensus 47 ~~~~~l~~~a~~~~~~v~~Dis 68 (357)
T PF05913_consen 47 ERLKELLKLAKELGMEVIADIS 68 (357)
T ss_dssp HHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHHHHHCCCEEEEECC
Confidence 4678999999999999999933
No 486
>PRK11142 ribokinase; Provisional
Probab=55.36 E-value=25 Score=23.56 Aligned_cols=20 Identities=15% Similarity=0.104 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCcEEEecc
Q psy15462 4 DPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgA 23 (71)
+.++.+.|+++|+++.+|-.
T Consensus 147 ~~~~~~~a~~~g~~v~~d~~ 166 (306)
T PRK11142 147 VLAAAKIAKQHGTKVILNPA 166 (306)
T ss_pred HHHHHHHHHHcCCEEEEECC
Confidence 56788899999999999943
No 487
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=55.22 E-value=9.6 Score=26.44 Aligned_cols=19 Identities=11% Similarity=-0.033 Sum_probs=16.9
Q ss_pred CcHHHHHHHHHhcCCcEEE
Q psy15462 2 SIDPQLKARCQEHNIPVHM 20 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~ 20 (71)
+++++|.+.|+++||-++-
T Consensus 72 ~di~elv~yA~~rgI~viP 90 (303)
T cd02742 72 AQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 5799999999999998874
No 488
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=54.58 E-value=16 Score=27.13 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=27.0
Q ss_pred cHHHHHHHHHhcCCcEEEecccchHHhhhCCCCH-HHHhcCCcEEEEc
Q psy15462 3 IDPQLKARCQEHNIPVHMDGARVFNAASYLGLPL-AEVCASVDTVMFC 49 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~-~~~~~~~D~v~~s 49 (71)
-+.++++.++++++|++.||- +. .+..+ +-+..+||.+.+.
T Consensus 319 ~~~~~~~~~~~~~~~viadGG-i~-----~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 319 AIADAAEAAKKYGIPVIADGG-IR-----YSGDIAKALAAGASAVMLG 360 (486)
T ss_pred HHHHHHHHhccCCCeEEEcCC-CC-----CHHHHHHHHHhCCCEEEEC
Confidence 355667778889999999974 11 22222 2346789988764
No 489
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=54.31 E-value=5.9 Score=23.14 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=13.4
Q ss_pred CcHHHHHHHHHhcCCcE
Q psy15462 2 SIDPQLKARCQEHNIPV 18 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l 18 (71)
+.+.++.++|+++||++
T Consensus 52 ~sl~kL~~La~~N~v~f 68 (82)
T PF11020_consen 52 DSLSKLYKLAKENNVSF 68 (82)
T ss_pred HHHHHHHHHHHHcCCCH
Confidence 56788888999888764
No 490
>PLN02967 kinase
Probab=54.24 E-value=15 Score=28.35 Aligned_cols=47 Identities=6% Similarity=-0.006 Sum_probs=27.6
Q ss_pred cHHHHHHHHHhcCCcEEEe-ccc--chHHhhhCCCCHHHHhcCCcEEEEc
Q psy15462 3 IDPQLKARCQEHNIPVHMD-GAR--VFNAASYLGLPLAEVCASVDTVMFC 49 (71)
Q Consensus 3 ~l~~i~~~a~~~gi~l~~D-gAr--~~~~~~~~~~~~~~~~~~~D~v~~s 49 (71)
.+.++.+.|+++|+.+.+| +-| +|.........+.++..++|++-+|
T Consensus 354 all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~N 403 (581)
T PLN02967 354 TTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVT 403 (581)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEEC
Confidence 3567888999999999999 323 3321000001134555667766654
No 491
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=54.14 E-value=9.1 Score=26.85 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=16.8
Q ss_pred CcHHHHHHHHHhcCCcEEE
Q psy15462 2 SIDPQLKARCQEHNIPVHM 20 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~ 20 (71)
+++.++.+.|+++|+|++.
T Consensus 130 ~~~~~v~~~a~~~Gmp~v~ 148 (265)
T COG1830 130 ENISQVVEDAHELGMPLVA 148 (265)
T ss_pred HHHHHHHHHHHHcCCceEE
Confidence 4678899999999999987
No 492
>KOG1358|consensus
Probab=54.08 E-value=20 Score=27.00 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCCHHHH----hcCCcEEEEcCCCCCccceeEEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV----CASVDTVMFCLSKGLGAPVGSILAGPE 66 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~~~----~~~~D~v~~s~~K~lg~p~gg~l~g~~ 66 (71)
-++++|.++..++...+++|=+--+.-....|.-+.|- ....|++++|+.-.++ -.||+.+|+.
T Consensus 250 ~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~ala-s~GgFc~G~~ 317 (467)
T KOG1358|consen 250 CPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALA-SGGGFCAGKS 317 (467)
T ss_pred cccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeeccccccc-ccCceeecce
Confidence 46899999999999999999664443333334334322 2457999999988554 4577888843
No 493
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=54.01 E-value=14 Score=25.04 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.4
Q ss_pred CcHHHHHHHHHhcCCcEE
Q psy15462 2 SIDPQLKARCQEHNIPVH 19 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~ 19 (71)
...+++.++|++||+|++
T Consensus 172 ar~~~~~~fa~~h~l~~i 189 (203)
T COG0108 172 ARLPELEEFAKEHGLPVI 189 (203)
T ss_pred cChHHHHHHHHHcCCcEE
Confidence 356889999999999986
No 494
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=53.95 E-value=9.7 Score=26.32 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=16.5
Q ss_pred CcHHHHHHHHHhcCCcEEEe
Q psy15462 2 SIDPQLKARCQEHNIPVHMD 21 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~D 21 (71)
+++++|.+.|+++||-|+--
T Consensus 73 ~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 73 EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp HHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHHHcCCceeee
Confidence 57999999999999988743
No 495
>KOG0186|consensus
Probab=53.81 E-value=10 Score=28.89 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.4
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
+.+.++++.|++.+|++++|+=
T Consensus 270 ~rl~~v~~~a~e~~V~llvDAE 291 (506)
T KOG0186|consen 270 SRLDKVAQRAQEKGVRLLVDAE 291 (506)
T ss_pred HHHHHHHHHHHHcCCceeechh
Confidence 3578899999999999999975
No 496
>PTZ00300 pyruvate kinase; Provisional
Probab=53.57 E-value=36 Score=25.54 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCcEEEecccchHHhhhCCCCHH-H---H----hcCCcEEEEcCCC
Q psy15462 4 DPQLKARCQEHNIPVHMDGARVFNAASYLGLPLA-E---V----CASVDTVMFCLSK 52 (71)
Q Consensus 4 l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~~~-~---~----~~~~D~v~~s~~K 52 (71)
.++|.+.|+++|.|+++ +.++++.+.....|-+ | + ..|+|.+..|+-=
T Consensus 234 Qk~Ii~~~~~~gkpvI~-ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ET 289 (454)
T PTZ00300 234 QKILISKCNVAGKPVIC-ATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGET 289 (454)
T ss_pred HHHHHHHHHHcCCCEEE-ECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechh
Confidence 46889999999999987 5688887777666632 2 2 4899999988743
No 497
>PRK05985 cytosine deaminase; Provisional
Probab=53.30 E-value=9.5 Score=26.95 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=17.7
Q ss_pred CcHHHHHHHHHhcCCcE--EEec
Q psy15462 2 SIDPQLKARCQEHNIPV--HMDG 22 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l--~~Dg 22 (71)
+.++++.++|+++|+++ |+|.
T Consensus 191 ~~l~~~~~~A~~~g~~i~~Hv~e 213 (391)
T PRK05985 191 GQLDIVFGLAERHGVGIDIHLHE 213 (391)
T ss_pred HHHHHHHHHHHHhCCCcEEeeCC
Confidence 46789999999999777 9874
No 498
>PLN02784 alpha-amylase
Probab=52.94 E-value=12 Score=30.36 Aligned_cols=22 Identities=23% Similarity=0.077 Sum_probs=19.9
Q ss_pred CcHHHHHHHHHhcCCcEEEecc
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGA 23 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgA 23 (71)
++++++.+-||++||.+++|..
T Consensus 568 ~ELk~LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 568 DELKDLVKSFHEVGIKVLGDAV 589 (894)
T ss_pred HHHHHHHHHHHHCCCEEEEEEC
Confidence 5789999999999999999954
No 499
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=52.55 E-value=7.5 Score=25.80 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=31.5
Q ss_pred CcHHHHHHHHHhcCCcEEEecccchHHhhhCCCC---HH---HH--hcCCcEEEEcCCCC
Q psy15462 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLP---LA---EV--CASVDTVMFCLSKG 53 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~DgAr~~~~~~~~~~~---~~---~~--~~~~D~v~~s~~K~ 53 (71)
++++++.+.|+++++|+++- .-+.+........ +. .+ ..++|++=.|..|.
T Consensus 112 ~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~ 170 (236)
T PF01791_consen 112 EEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP 170 (236)
T ss_dssp HHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS
T ss_pred HHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc
Confidence 46889999999999999999 4333322111111 11 11 37899998887754
No 500
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=52.48 E-value=11 Score=26.18 Aligned_cols=19 Identities=16% Similarity=0.010 Sum_probs=16.9
Q ss_pred CcHHHHHHHHHhcCCcEEE
Q psy15462 2 SIDPQLKARCQEHNIPVHM 20 (71)
Q Consensus 2 ~~l~~i~~~a~~~gi~l~~ 20 (71)
+++++|.+.|+++||-++=
T Consensus 60 ~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 60 EEIREIDDYAAELGIEVIP 78 (301)
T ss_pred HHHHHHHHHHHHcCCEEEe
Confidence 6899999999999998873
Done!