RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15462
(71 letters)
>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase.
Length = 288
Score = 100 bits (252), Expect = 6e-28
Identities = 34/66 (51%), Positives = 49/66 (74%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65
+++A +EH IP+H+DGAR+ NAA LG+ + E+ + D+V LSKGLGAPVGS+LAG
Sbjct: 153 EIRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADSVSMSLSKGLGAPVGSVLAGS 212
Query: 66 EEFIQK 71
++FI
Sbjct: 213 DDFIAY 218
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 97.8 bits (244), Expect = 2e-26
Identities = 31/65 (47%), Positives = 47/65 (72%)
Query: 7 LKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPE 66
+ A +E+ +P+H+DGAR+ NAA+ LG+ L + VD+V FCLSKG GAPVG+++ G
Sbjct: 151 ISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNR 210
Query: 67 EFIQK 71
+FI +
Sbjct: 211 DFIAR 215
>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and
metabolism].
Length = 342
Score = 95.0 bits (237), Expect = 2e-25
Identities = 32/66 (48%), Positives = 47/66 (71%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65
+ A C+EH +P+HMDGAR+ NA LG+ L + + VD+V FCL+KG GAPVG+I+ G
Sbjct: 154 AISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGN 213
Query: 66 EEFIQK 71
+F ++
Sbjct: 214 RDFAKR 219
>gnl|CDD|178323 PLN02721, PLN02721, threonine aldolase.
Length = 353
Score = 82.8 bits (205), Expect = 7e-21
Identities = 30/61 (49%), Positives = 45/61 (73%)
Query: 11 CQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70
+ H + +H+DGAR+FNA+ LG+P+ + + D+V CLSKGLGAPVGS++ G + FI+
Sbjct: 167 AKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIR 226
Query: 71 K 71
K
Sbjct: 227 K 227
>gnl|CDD|236710 PRK10534, PRK10534, L-threonine aldolase; Provisional.
Length = 333
Score = 81.7 bits (202), Expect = 2e-20
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 12 QEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 71
+E N+ +H+DGAR+FNA G L E+ D+ CLSKGLG PVGS+L G ++I++
Sbjct: 157 RERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKR 216
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 36.6 bits (85), Expect = 2e-04
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKGLGAPVGSILAG 64
+++ +E+ I + +D A A+ G L D V F L K LG G ++
Sbjct: 113 EIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGA---DVVTFSLHKNLGGEGGGVVIV 169
>gnl|CDD|232992 TIGR00474, selA, seryl-tRNA(sec) selenium transferase. In
bacteria, the incorporation of selenocysteine as the
21st amino acid, encoded by TGA, requires several
elements: SelC is the tRNA itself, SelD acts as a donor
of reduced selenium, SelA modifies a serine residue on
SelC into selenocysteine, and SelB is a
selenocysteine-specific translation elongation factor.
3-prime or 5-prime non-coding elements of mRNA have been
found as probable structures for directing
selenocysteine incorporation. This model describes SelA.
This model excludes homologs that appear to differ in
function from Frankia alni, Helicobacter pylori,
Methanococcus jannaschii and other archaea, and so on
[Protein synthesis, tRNA aminoacylation].
Length = 454
Score = 34.9 bits (81), Expect = 0.001
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 6 QLKARCQEHNIPVHMD-GARVFNAASYLGLP-----LAEVCASVDTVMFCLSKGLGAPVG 59
+L A +EH +PV D G+ S GLP + A VD V F K LG P
Sbjct: 236 ELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQA 295
Query: 60 SILAGPEEFIQK 71
I+ G +E I++
Sbjct: 296 GIIVGKKELIER 307
>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas
antigen (SLA/LP autoantigen). This family consists of
several eukaryotic and archaeal proteins which are
related to the human soluble liver antigen/liver
pancreas antigen (SLA/LP autoantigen). Autoantibodies
are a hallmark of autoimmune hepatitis, but most are not
disease specific. Autoantibodies to soluble liver
antigen (SLA) and to liver and pancreas antigen (LP)
have been described as disease specific, occurring in
about 30% of all patients with autoimmune hepatitis. The
function of SLA/LP is unknown, however, it has been
suggested that the protein may function as a serine
hydroxymethyltransferase and may be an important enzyme
in the thus far poorly understood selenocysteine
pathway. The archaeal sequences Methanopyrus kandleri
spcS and MK0229 are annotated as being pyridoxal
phosphate-dependent enzymes.
Length = 386
Score = 31.0 bits (70), Expect = 0.031
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 5 PQLKARCQEHNIPVHMDGARVFNAASYLGLPL-AEVCASVDTVMFCLSKGLGAPVG-SIL 62
++ C E+++P ++GA + Y+ L A +D V+ L K PVG +I+
Sbjct: 175 KEIAKICAEYDVPHLVNGAYGIQSEKYIHLIQQAAKVGRIDAVVQSLDKNFIVPVGGAII 234
Query: 63 AGP-EEFIQ 70
A E FIQ
Sbjct: 235 AAFDESFIQ 243
>gnl|CDD|235278 PRK04311, PRK04311, selenocysteine synthase; Provisional.
Length = 464
Score = 30.2 bits (69), Expect = 0.048
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 7 LKARCQEHNIPVHMD-GARVFNAASYLGLP----LAEVCAS-VDTVMFCLSKGLGAPVGS 60
L A +EH +PV D G+ S GLP + E+ A+ VD V F K LG P
Sbjct: 242 LAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAG 301
Query: 61 ILAGPEEFIQK 71
I+ G +E I +
Sbjct: 302 IIVGKKELIAR 312
>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid
dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate/glycerate and related dehydrogenases of the
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric.
Length = 294
Score = 29.6 bits (67), Expect = 0.071
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 34 LPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEF 68
LPL E+ +VD + CL K + IL G EEF
Sbjct: 183 LPLNELLKTVDVICTCLPKNV------ILLGEEEF 211
>gnl|CDD|224832 COG1921, SelA, Selenocysteine synthase [seryl-tRNASer selenium
transferase] [Amino acid transport and metabolism].
Length = 395
Score = 28.9 bits (65), Expect = 0.14
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 6 QLKARCQEHNIPVHMD---GARVFNAASYLGLP-LAEVCAS-VDTVMFCLSKGLGAPVGS 60
+L E +PV +D GA V P L E A D V F K LG P
Sbjct: 178 ELVEIAHEKGLPVIVDLASGALVDK------EPDLREALALGADLVSFSGDKLLGGPQAG 231
Query: 61 ILAGPEEFIQK 71
I+ G +E I+K
Sbjct: 232 IIVGKKELIEK 242
>gnl|CDD|112645 pfam03841, SelA, L-seryl-tRNA selenium transferase.
Length = 367
Score = 28.8 bits (65), Expect = 0.17
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 5 PQLKARCQEHNIPVHMD-GARVFNAASYLGLP----LAEVCAS-VDTVMFCLSKGLGAPV 58
+L A +EH +PV+ D G+ S GLP + E+ A VD V F K LG P
Sbjct: 160 AELVALGKEHGLPVYYDLGSGSLVDLSQYGLPKEPTVQELLALGVDLVSFSGDKLLGGPQ 219
Query: 59 GSILAGPEEFIQK 71
I+ G +E I++
Sbjct: 220 AGIIVGKKELIER 232
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 28.3 bits (64), Expect = 0.23
Identities = 6/24 (25%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGA 23
+IDP ++ +++++ +H+D A
Sbjct: 163 AIDPLEEIADLAEKYDLWLHVDAA 186
>gnl|CDD|236517 PRK09440, avtA, valine--pyruvate transaminase; Provisional.
Length = 416
Score = 27.9 bits (63), Expect = 0.36
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 19/75 (25%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDT--------VMFCLSK-GL-G 55
+L A ++HNIP+ +D A Y G P + S T + LSK GL G
Sbjct: 203 KLDALARQHNIPLLIDNA-------Y-GPPFPGIIFSEATPLWNPNIILCMSLSKLGLPG 254
Query: 56 APVGSILAGPEEFIQ 70
G I+ EE I+
Sbjct: 255 VRCG-IVIADEEIIE 268
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 27.0 bits (59), Expect = 0.74
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 8 KARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVM-FCLSKGLGAPVGSILAGP 65
+ARC++HN P A VF + +V S+ ++ C+ G G G P
Sbjct: 151 QARCEQHNGPQQSHHAAVFCRVA--EKRGFQVFISLLALLSACVLTGHGVSAGCTYHAP 207
>gnl|CDD|215238 PLN02435, PLN02435, probable UDP-N-acetylglucosamine
pyrophosphorylase.
Length = 493
Score = 26.4 bits (58), Expect = 1.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 14 HNIPVHMDGARVFNAASYLGLPLAEVC 40
H++P++ G V SY G L +C
Sbjct: 454 HSVPLYATGVEVSPLCSYAGENLEAIC 480
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 26.2 bits (58), Expect = 1.2
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGA 23
SID +L +E+ I +H+D A
Sbjct: 222 SIDDIEELADIAEEYGIWLHVDAA 245
>gnl|CDD|171564 PRK12532, PRK12532, RNA polymerase sigma factor; Provisional.
Length = 195
Score = 26.0 bits (57), Expect = 1.4
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 14 HNIPVHMDGARVFNAASYLGLPLAEVCASVD 44
+N+P + ARVF LG E+
Sbjct: 135 YNLPENT--ARVFTLKEILGFSSDEIQQMCG 163
>gnl|CDD|237314 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase,
PLP-dependent; Provisional.
Length = 460
Score = 25.9 bits (58), Expect = 1.5
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 11 CQEHNIPVHMDGAR 24
+++ IPV +D AR
Sbjct: 207 AKKYGIPVVIDAAR 220
>gnl|CDD|182372 PRK10310, PRK10310, PTS system galactitol-specific transporter
subunit IIB; Provisional.
Length = 94
Score = 25.6 bits (56), Expect = 1.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYL-GLPLAEVCASVD 44
++K CQ HNIPV + RV +Y+ G+ L A VD
Sbjct: 22 EIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVD 61
>gnl|CDD|146279 pfam03557, Bunya_G1, Bunyavirus glycoprotein G1. Bunyavirus has
three genomic segments: small (S), middle-sized (M), and
large (L). The S segment encodes the nucleocapsid and a
non-structural protein. The M segment codes for two
glycoproteins, G1 and G2, and another non-structural
protein (NSm). The L segment codes for an RNA
polymerase. This family contains the G1 glycoprotein
which is the viral attachment protein.
Length = 871
Score = 25.4 bits (56), Expect = 2.5
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 39 VCASVDTVMFCLSKGLGAPVGSILA 63
C + V CLS GAPV +++A
Sbjct: 239 ECKNAKDVS-CLSPRSGAPVENLIA 262
>gnl|CDD|226404 COG3887, COG3887, Predicted signaling protein consisting of a
modified GGDEF domain and a DHH domain [Signal
transduction mechanisms].
Length = 655
Score = 25.4 bits (56), Expect = 2.9
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 22 GARVFNAASYL 32
G+R F+AASYL
Sbjct: 508 GSRTFDAASYL 518
>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase;
Reviewed.
Length = 486
Score = 25.2 bits (56), Expect = 3.4
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 21/69 (30%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV 58
PQ+ A +++ IPV DG ++ + LA A VM +
Sbjct: 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGD--IAKALA---AGASAVM----------L 359
Query: 59 GSILAGPEE 67
GS+LAG EE
Sbjct: 360 GSMLAGTEE 368
>gnl|CDD|187715 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA
formyltransferase, N-terminal hydrolase domain.
Methionyl-tRNA formyltransferase (Met-tRNA-FMT),
N-terminal formyltransferase domain. Met-tRNA-FMT
transfers a formyl group from N-10
formyltetrahydrofolate to the amino terminal end of a
methionyl-aminoacyl-tRNA acyl moiety, yielding
formyl-Met-tRNA. Formyl-Met-tRNA plays essential role
in protein translation initiation by forming complex
with IF2. The formyl group plays a dual role in the
initiator identity of N-formylmethionyl-tRNA by
promoting its recognition by IF2 and by impairing its
binding to EFTU-GTP. The N-terminal domain contains a
Rossmann fold and it is the catalytic domain of the
enzyme.
Length = 204
Score = 24.7 bits (55), Expect = 3.9
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 3 IDPQLKARCQEHNIPVH 19
+K E +PV
Sbjct: 44 TPSPVKELALELGLPVL 60
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 24.8 bits (55), Expect = 4.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 39 VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 70
+ VD +M L K GA VG +AG +E I
Sbjct: 189 LTDDVDIIMGTLGKAFGA-VGGYIAGSKELID 219
>gnl|CDD|193541 cd05665, M20_Acy1_IAAspH_bact, M20 Peptidases Aminoacyclase-1
indole-3-acetic-L-aspartic acid hydrolase from bacteria
and archaea. Peptidase M20 family, Bacterial and
archaeal Aminoacyclase-1 indole-3-acetic-L-aspartic acid
hydrolase (IAA-Asp hydrolase; IAAspH; IAAH; IAA
amidohydrolase; EC 3.5.1.-) subfamily. IAAspH hydrolyzes
indole-3-acetyl-N-aspartic acid (IAA or auxin) to
indole-3-acetic acid. Genes encoding IAA-amidohydrolases
were first cloned from Arabidopsis; ILR1, IAR3, ILL1 and
ILL2 encode active IAA- amino acid hydrolases, and three
additional amidohydrolase-like genes (ILL3, ILL5, ILL6)
have been isolated. In higher plants, the growth
regulator indole-3-acetic acid (IAA or auxin) is found
both free and conjugated via amide bonding to a variety
of amino acids and peptides, and via an ester linkage to
carbohydrates. IAA-Asp conjugates are involved in
homeostatic control, protection, storing and subsequent
use of free IAA. IAA-Asp is also found in some plants as
a unique intermediate for entering into IAA
non-decarboxylative oxidative pathway. IAA
amidohydrolase cleaves the amide bond between the auxin
and the conjugated amino acid. Enterobacter agglomerans
IAAspH has very strong enzyme activity and substrate
specificity towards IAA-Asp, although its substrate
affinity is weaker compared to Arabidopsis enzymes of
the ILR1 gene family. Enhanced IAA-hydrolase activity
has been observed during clubroot disease in Chinese
cabbage.
Length = 415
Score = 24.8 bits (55), Expect = 4.8
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 33 GLPLAE--VCASVDTVMFCLSKGLGAPVGSILAGPEEFI 69
+AE V VD G P G ++AGP+ F+
Sbjct: 177 AKAMAESGVLDDVD-YFLAGHIGFDVPTGEVVAGPDGFL 214
>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional.
Length = 408
Score = 24.5 bits (53), Expect = 4.8
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 47 MFCLSKGLGA--PVGSILAGPE 66
+ L+K LG P+G++LAGP+
Sbjct: 251 IVTLAKALGGGFPIGAMLAGPK 272
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 24.6 bits (54), Expect = 4.9
Identities = 4/13 (30%), Positives = 10/13 (76%)
Query: 11 CQEHNIPVHMDGA 23
C ++++ +H+D A
Sbjct: 220 CNKYDLWLHVDAA 232
>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family. This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). The
major groups in this CD correspond to ornithine
aminotransferase, acetylornithine aminotransferase,
alanine-glyoxylate aminotransferase, dialkylglycine
decarboxylase, 4-aminobutyrate aminotransferase,
beta-alanine-pyruvate aminotransferase,
adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, and glutamate-1-semialdehyde
2,1-aminomutase. All the enzymes belonging to this
family act on basic amino acids and their derivatives
are involved in transamination or decarboxylation.
Length = 413
Score = 24.5 bits (54), Expect = 5.0
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 47 MFCLSKGL--GAPVGSILAGPE 66
+ L KGL G P+G++L E
Sbjct: 255 IVTLGKGLGGGLPLGAVLGREE 276
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of
6-phosphogluconate dehydrogenase. The NAD binding
domain of 6-phosphogluconate dehydrogenase adopts a
Rossmann fold.
Length = 163
Score = 24.0 bits (53), Expect = 7.3
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 36 LAEVCASVDTVMFCLSKGLGAPVGSILAGPE 66
AE AS D V+ + GA V +++ G +
Sbjct: 50 PAEFVASADVVITMV--PAGAAVDAVILGED 78
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 24.0 bits (53), Expect = 8.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 43 VDTVMFCLSKGLGAPVGSILAGPEEFI 69
VD + L K LG G AG +E I
Sbjct: 235 VDIITGTLGKALGGASGGYTAGRKEVI 261
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 23.8 bits (52), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 33 GLPLAEVCASVDTVMFCLSKG----LGAPVG 59
GLPL V A + T + L++G L P G
Sbjct: 260 GLPLFHVNALLVTGLAPLARGAHVVLATPQG 290
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0869 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,567,784
Number of extensions: 260805
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 36
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (23.9 bits)