RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15462
(71 letters)
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 118 bits (299), Expect = 1e-34
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65
+ C+E I +H+DGAR+F Y AE+ D++ KGLG G+ILAGP
Sbjct: 160 TISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGP 219
Query: 66 EEFIQK 71
F Q
Sbjct: 220 AAFCQT 225
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 117 bits (294), Expect = 7e-34
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65
++ C E I +H+DGAR++ + E+CA D+V KG+G G+ILAG
Sbjct: 162 KISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGN 221
Query: 66 EEFIQK 71
++F+Q+
Sbjct: 222 DDFVQE 227
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 102 bits (256), Expect = 2e-28
Identities = 33/66 (50%), Positives = 47/66 (71%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILAGP 65
++ +EH I VH+DGAR+FNA+ G+P+ E D+VMFCLSKGL APVGS++ G
Sbjct: 157 EICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGD 216
Query: 66 EEFIQK 71
+FI++
Sbjct: 217 RDFIER 222
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 95.7 bits (239), Expect = 7e-26
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV--CASVDTVMFCLSKGLGAPVGSILA 63
+ C+ ++ +HMDG+R NA LG AE+ A VD + F +K +I+
Sbjct: 164 AIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVL 223
Query: 64 GPEEFIQK 71
+
Sbjct: 224 FNTSLATE 231
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 91.5 bits (228), Expect = 3e-24
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLG--LPLAEVCASVDTVMFCLSKGLGAPVGSILA 63
+ A C+EH + + +DGAR+ +A S L LA++ D +K G +++
Sbjct: 168 DISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALII 227
Query: 64 GPEEFIQK 71
+
Sbjct: 228 LNDALKPN 235
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 71.2 bits (174), Expect = 1e-16
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 12/76 (15%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASY------------LGLPLAEVCASVDTVMFCLSKG 53
+ + ++++IPV MD AR A + + E D + K
Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267
Query: 54 LGAPVGSILAGPEEFI 69
P+G +L ++
Sbjct: 268 AMVPMGGLLCMKDDSF 283
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 56.0 bits (134), Expect = 2e-11
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 14/80 (17%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASY------------LGLPLAEVCASVDTVMFCLSKG 53
++ ++H I V MD AR A + + + ++ D + K
Sbjct: 208 EVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKD 267
Query: 54 LGAPVGSILA--GPEEFIQK 71
+G ++A EE
Sbjct: 268 PLLNIGGLVAIRDNEEIFTL 287
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 50.9 bits (121), Expect = 1e-09
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASY------------LGLPLAEVCASVDTVMFCLSKG 53
++ + H I V D R A + + + E+ + D K
Sbjct: 199 AVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKD 258
Query: 54 LGAPVGSILAGPEEFI 69
+G L ++ +
Sbjct: 259 CLVNIGGFLCMNDDEM 274
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 40.8 bits (95), Expect = 6e-06
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVG 59
+ D ++ C+ ++IP ++GA YL VD V+ K L P+G
Sbjct: 246 NSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIG 305
Query: 60 S 60
Sbjct: 306 G 306
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 33.1 bits (75), Expect = 0.003
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 11 CQEHNIPVHMDGARVFNAASYLGLP-LAEVCASVDTVMFCLSKGLGAPVGS--ILAGPEE 67
C ++IP ++ A ++ + L +D + L K PVG I +
Sbjct: 242 CANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDS 301
Query: 68 FIQK 71
FIQ+
Sbjct: 302 FIQE 305
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 33.5 bits (76), Expect = 0.003
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 11 CQEHNIPVHMDGARVFNAASYLGLP-LAEVCASVDTVMFCLSKGLGAPVGS--ILAGPEE 67
C ++IP ++ A ++ + L +D + L K PVG I E
Sbjct: 224 CANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEP 283
Query: 68 FIQK 71
FIQ
Sbjct: 284 FIQD 287
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 31.3 bits (71), Expect = 0.011
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 5 PQLKARCQEHNIPVHMD---GARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSI 61
++ + V +D GARV P A + D V+ K + P G +
Sbjct: 162 KKVINTAKNKEAIVFVDDASGARVR---LLFNQPPA-LKLGADLVVTSTDKLMEGPRGGL 217
Query: 62 LAGPEEFIQK 71
LAG +E + K
Sbjct: 218 LAGKKELVDK 227
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 29.7 bits (66), Expect = 0.054
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 5 PQLKARCQEHNIPVHMDGARVFNAA-------SYLGLPLAEVCASVDTVMFCLSKGLGAP 57
+K ++ IP +DG S L + + V C+ L P
Sbjct: 357 DMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGN--WRYEAVFRCVKTELLFP 414
Query: 58 VGSILAGPEEFIQK 71
+ A E + +
Sbjct: 415 LNEPKAKVREQVDQ 428
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 28.5 bits (64), Expect = 0.14
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGA 23
+ID +L +E+NI +H+D A
Sbjct: 186 TIDNIEELSKIAKENNIYIHVDAA 209
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 27.4 bits (61), Expect = 0.32
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGA 23
S D ++ C E +I +H+D A
Sbjct: 250 SFDNLLEVGPICHEEDIWLHVDAA 273
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 27.4 bits (61), Expect = 0.37
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGA 23
+ D + +HN+ +H+D A
Sbjct: 249 AFDYLDECGPVGNKHNLWIHVDAA 272
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 27.3 bits (61), Expect = 0.38
Identities = 7/24 (29%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGA 23
+ DP ++ C+++N+ +H+D A
Sbjct: 260 AFDPIQEIADICEKYNLWLHVDAA 283
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 27.2 bits (60), Expect = 0.38
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 3 IDP--QLKARCQEHNIPVHMDGARVFNAASY---LGLPLAEV---CASVDTVMFCLSKGL 54
+DP ++ A EH I H+D + LG P+ V +V K
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYG 314
Query: 55 GAPVGS 60
G+
Sbjct: 315 YGAKGT 320
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 27.0 bits (60), Expect = 0.44
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGA 23
+ DP + CQ H + +H+D A
Sbjct: 274 AFDPLEAIADVCQRHGLWLHVDAA 297
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 27.0 bits (60), Expect = 0.47
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGA 23
+ D +L C + +H+D A
Sbjct: 256 AFDCLSELGPICAREGLWLHIDAA 279
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 26.9 bits (60), Expect = 0.55
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 2 SIDP--QLKARCQEHNIPVHMDGA 23
+ID + +H++ +H+DGA
Sbjct: 273 AIDDLDFIADMAVKHDMWMHVDGA 296
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 25.0 bits (54), Expect = 2.0
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 26 FNAASYLGLPLAEVCASVDTVMFCLS 51
+PL + SVD +FCLS
Sbjct: 101 VTVCDMAQVPLED--ESVDVAVFCLS 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 2.4
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 22 GARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSILA--G-PEEFIQK 71
G R + A LP + + S++ G P +L+ +E +Q
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLEN-------NEGVP-SPMLSISNLTQEQVQD 351
>2yzs_A Putative uncharacterized protein; uncharacterized conserved
protein, structural genomics, unknown function, NPPSFA;
2.00A {Aquifex aeolicus}
Length = 315
Score = 24.7 bits (54), Expect = 2.6
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 2 SIDPQLKARCQEHNIPVH 19
S++ +L IP+H
Sbjct: 45 SLNTKLLNFLASKGIPLH 62
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 24.8 bits (55), Expect = 2.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 39 VCASVDTVMFCLSKGLGAPVGSILAGPEEFI 69
V VD + L K LG G A +E +
Sbjct: 234 VMGRVDIITGTLGKALGGASGGYTAARKEVV 264
>3pv9_D Putative uncharacterized protein PH1245; crispr,
crispr-associated CAS1, metallonuclease, DNAse, PROK
system, immune system, nuclease; 2.85A {Pyrococcus
horikoshii}
Length = 322
Score = 24.7 bits (54), Expect = 2.6
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 2 SIDPQLKARCQEHNIPVH 19
+I Q + I +H
Sbjct: 47 NITSQALHYIAQKGILIH 64
>3lfx_A Uncharacterized protein; CAS1, DNAse, prokaryotic immune system,
structural genomics, protein structure initiative;
2.70A {Thermotoga maritima}
Length = 319
Score = 24.7 bits (54), Expect = 3.0
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 2 SIDPQLKARCQEHNIPVH 19
++ + + IP+H
Sbjct: 45 DLNKRFLEFLSQKRIPIH 62
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 24.4 bits (54), Expect = 3.8
Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 37/77 (48%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLGL--------PLAEVCASVDTVMFCL 50
PQ+ A E+ IPV DG G+ +A A VM
Sbjct: 318 PQITAIADAAGVANEYGIPVIADG----------GIRFSGDISKAIA---AGASCVM--- 361
Query: 51 SKGLGAPVGSILAGPEE 67
VGS+ AG EE
Sbjct: 362 -------VGSMFAGTEE 371
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 24.0 bits (53), Expect = 4.4
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 37/77 (48%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLGL--------PLAEVCASVDTVMFCL 50
PQ+ A R QE+ + V DG G+ +A A D VM
Sbjct: 312 PQITAVAMVADRAQEYGLYVIADG----------GIRYSGDIVKAIA---AGADAVM--- 355
Query: 51 SKGLGAPVGSILAGPEE 67
+G++LAG +E
Sbjct: 356 -------LGNLLAGTKE 365
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2,
protein structure initiative, tuberculosis structural
genomics consortium; 2.50A {Mycobacterium smegmatis}
Length = 228
Score = 24.3 bits (53), Expect = 4.4
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 2 SIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEV 39
+I Q + I V DGA + AS G+ A+V
Sbjct: 93 AITHQPPGDRVDVTIDVVYDGADLHEVASLTGMTPAQV 130
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 24.0 bits (53), Expect = 5.0
Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 37/77 (48%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLGL--------PLAEVCASVDTVMFCL 50
PQL A ++H IPV DG G+ LA A VM
Sbjct: 343 PQLTAVYDCATEARKHGIPVIADG----------GIKYSGDMVKALA---AGAHVVM--- 386
Query: 51 SKGLGAPVGSILAGPEE 67
+GS+ AG E
Sbjct: 387 -------LGSMFAGVAE 396
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 24.0 bits (53), Expect = 5.0
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 37/77 (48%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLGL--------PLAEVCASVDTVMFCL 50
PQ+ A +E+ + DG G+ LA A + VM
Sbjct: 320 PQVTAIYDAAAVAREYGKTIIADG----------GIKYSGDIVKALA---AGGNAVM--- 363
Query: 51 SKGLGAPVGSILAGPEE 67
+GS+ AG +E
Sbjct: 364 -------LGSMFAGTDE 373
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 24.1 bits (53), Expect = 5.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 39 VCASVDTVMFCLSKGLGAPVGSILAGPEEFI 69
V VD + L K LG G +G +E I
Sbjct: 232 VADRVDILTGTLGKALGGASGGYTSGHKEII 262
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 24.0 bits (53), Expect = 5.3
Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 37/77 (48%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLGL--------PLAEVCASVDTVMFCL 50
PQL A +++++P+ DG G+ LA A ++VM
Sbjct: 324 PQLTAVMECSEVARKYDVPIIADG----------GIRYSGDIVKALA---AGAESVM--- 367
Query: 51 SKGLGAPVGSILAGPEE 67
VGSI AG EE
Sbjct: 368 -------VGSIFAGTEE 377
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin,
allophanate hydrolase, structural G unknown function,
NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Length = 494
Score = 23.8 bits (52), Expect = 5.8
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 16 IPVHMDGARVFNAASYLGLPLAEV----CASVDTVMFCLSKG--LGAPV 58
IPV DG + AS LGL L V + V G G P
Sbjct: 80 IPVRYDGEDLPEVASRLGLSLEAVKALHQKPLYRVYAL---GFTPGFPF 125
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM
barrel, IMPDH, IMP dehydrogenase, LOO purine
biosynthesis, oxidoreductase; 2.40A {Borrelia
burgdorferi} SCOP: c.1.5.1
Length = 404
Score = 23.7 bits (52), Expect = 6.2
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 21/69 (30%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPV 58
PQ+ A C NI + DG + G + + A D+VM +
Sbjct: 240 PQITAICDVYEACNNTNICIIADGG-----IRFSGDVVKAIAAGADSVM----------I 284
Query: 59 GSILAGPEE 67
G++ AG +E
Sbjct: 285 GNLFAGTKE 293
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 23.6 bits (52), Expect = 6.7
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 5 PQLKARCQEHNIPVHMDG 22
+LK ++H + V ++G
Sbjct: 214 RELKEYLKKHGVNVRLEG 231
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 23.7 bits (52), Expect = 6.9
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 5 PQLKARCQEHNIPVHMDG 22
+LK ++H + V ++G
Sbjct: 240 RELKEYLKKHGVNVRLEG 257
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 23.3 bits (51), Expect = 8.2
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 23/70 (32%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKGLGAP 57
PQ+ A + IP+ DG Y G + A + +VM
Sbjct: 191 PQITAIEKCSSVASKFGIPIIADGG-----IRYSGDIGKA-LAVGASSVM---------- 234
Query: 58 VGSILAGPEE 67
+GSILAG EE
Sbjct: 235 IGSILAGTEE 244
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold,
oxidoreductase; 3.19A {Cryptosporidium parvum}
Length = 400
Score = 23.3 bits (51), Expect = 9.0
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 23/70 (32%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKGLGAP 57
PQ+ A + IP+ DG Y G + A + +VM
Sbjct: 230 PQITAIEKCSSVASKFGIPIIADGG-----IRYSGDIGKA-LAVGASSVM---------- 273
Query: 58 VGSILAGPEE 67
+GSILAG EE
Sbjct: 274 IGSILAGTEE 283
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio
cholerae o1 biovar el tor} PDB: 4ff0_A* 4fez_A
Length = 366
Score = 23.4 bits (51), Expect = 9.4
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 23/70 (32%)
Query: 5 PQLKA------RCQEHNIPVHMDGARVFNAASYLG-LPLAEVCASVDTVMFCLSKGLGAP 57
PQ+ A E+ IPV DG + G + A + A VM
Sbjct: 195 PQITAIADAAGVANEYGIPVIADGG-----IRFSGDISKA-IAAGASCVM---------- 238
Query: 58 VGSILAGPEE 67
VGS+ AG EE
Sbjct: 239 VGSMFAGTEE 248
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine
biosynthesis, ATP-binding, nucleotide-binding, OPPF,
PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Length = 255
Score = 23.4 bits (50), Expect = 9.8
Identities = 5/17 (29%), Positives = 9/17 (52%), Gaps = 5/17 (29%)
Query: 11 CQEHNIPVHMDGARVFN 27
+++N+P VFN
Sbjct: 213 ARDYNLPA-----HVFN 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,087,303
Number of extensions: 51952
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 47
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)