RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15462
(71 letters)
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 48.2 bits (114), Expect = 4e-09
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 12/78 (15%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAA--------SYLGLPLAEV----CASVDTVMFCLSKG 53
+ + I + D R A Y + + ++ + D K
Sbjct: 199 AVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKD 258
Query: 54 LGAPVGSILAGPEEFIQK 71
+G L +E +
Sbjct: 259 CLVNIGGFLCMNDEEMFS 276
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 47.6 bits (112), Expect = 7e-09
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLGLP------------LAEVCASVDTVMFCLSKG 53
+ + ++++IPV MD AR A ++ E D + K
Sbjct: 208 AMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKD 267
Query: 54 LGAPVGSILAGPEEFIQK 71
P+G +L ++
Sbjct: 268 AMVPMGGLLCMKDDSFFD 285
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 37.2 bits (85), Expect = 4e-05
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 5 PQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGS--IL 62
++ C+ ++IP ++GA YL VD V+ K L P+G +
Sbjct: 231 VEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVY 290
Query: 63 AGPEEFIQK 71
+ EFI++
Sbjct: 291 STDAEFIKE 299
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 37.2 bits (85), Expect = 5e-05
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 12/78 (15%)
Query: 6 QLKARCQEHNIPVHMDGARVFNAASYLG------------LPLAEVCASVDTVMFCLSKG 53
++ ++H I V MD AR A ++ + ++ D + K
Sbjct: 207 EVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKD 266
Query: 54 LGAPVGSILAGPEEFIQK 71
+G ++A +
Sbjct: 267 PLLNIGGLVAIRDNEEIF 284
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 31.5 bits (70), Expect = 0.005
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 11 CQEHNIPVHMDGAR-VFNAASYLGLPLAEVCASVDTVMFCLSKGLGAPVGSI 61
C ++IP ++ A + ++ + +D + L K PVG
Sbjct: 220 CANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGA 271
>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio
cholerae [TaxId: 666]}
Length = 237
Score = 26.7 bits (58), Expect = 0.19
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 7 LKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD 44
+ + V M+ A ++ A+ G +C D
Sbjct: 167 FDVMDKYGIVGVEMEAAGIYGVAAEYGAKALAICTVSD 204
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 25.9 bits (56), Expect = 0.43
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 7 LKARCQEHNIPVHMDGARVFNAA-SYLGLPLAEVCASVDTVMFCLSKGLGAPVGSI 61
+ C E +I +H+D A +A L D+ F K L
Sbjct: 257 VGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCS 312
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 25.9 bits (56), Expect = 0.47
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 5 PQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVDTVMFCLSKGLGA 56
+ C+++N+ D V G L +V + L K L
Sbjct: 210 QGVYDICKKYNVLFVAD--EVQTGLGRTGKLLCVHHYNVKPDVILLGKALSG 259
>d1odka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Thermus
thermophilus [TaxId: 274]}
Length = 234
Score = 24.8 bits (53), Expect = 0.91
Identities = 5/44 (11%), Positives = 16/44 (36%)
Query: 1 MSIDPQLKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD 44
+ + +A + + M+ + +F G+ + A +
Sbjct: 160 ATTPEEARAWARYGVLAFEMEASALFLLGRMRGVRTGAILAVSN 203
>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli
[TaxId: 562]}
Length = 250
Score = 24.7 bits (53), Expect = 0.95
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 7 LKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD 44
++ + M+ A + + GL V +
Sbjct: 181 MEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIV 218
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 234
Score = 24.3 bits (52), Expect = 1.5
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 8 KARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD 44
K NI V M+ A +F + G A V D
Sbjct: 167 KKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSD 203
>d2ac7a1 c.56.2.1 (A:2-232) Purine nucleoside phosphorylase, PNP
{Bacillus anthracis [TaxId: 1392]}
Length = 231
Score = 24.0 bits (51), Expect = 1.8
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 7 LKARCQEHNIPVHMDGARVFNAASYLGLPLAEVCASVD 44
+K + V M+ ++ A+ G+ V D
Sbjct: 166 VKKLGDYGVLAVEMETTALYTLAAKYGVNALSVLTVSD 203
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of
ku70 {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 23.1 bits (50), Expect = 1.9
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 5 PQLKARCQEHNIPV 18
P LK C+ + +
Sbjct: 21 PMLKEACRAYGLKS 34
>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
562]}
Length = 477
Score = 23.4 bits (50), Expect = 3.0
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 18 VHMDGARVFNAASYLGLPLAEVCASVDTVM 47
+ M+ A + +P + D +
Sbjct: 395 IDMESATIAAQGYRFRVPYGTLLCVSDKPL 424
>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Thermotoga
maritima [TaxId: 2336]}
Length = 253
Score = 22.8 bits (48), Expect = 4.8
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 5 PQLKARCQEHNIPVHMDG 22
+LK ++H + V ++G
Sbjct: 235 RELKEYLKKHGVNVRLEG 252
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 258,835
Number of extensions: 9172
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 17
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)