BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15463
(68 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 94.4 bits (233), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/54 (72%), Positives = 48/54 (88%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCVV+NPYK+LPIYTE I+E Y+G KR +VPPHV+A+T+ AYRSMLQ +
Sbjct: 91 TYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDR 144
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 48/54 (88%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCVV+NPYK+LPIY+EKI++ YKG KR ++PPH++AI D AYRSMLQ +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 48/54 (88%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCVV+NPYK+LPIY+EKI++ YKG KR ++PPH++AI D AYRSMLQ +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 48/54 (88%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCVV+NPYK+LPIY+EKI++ YKG KR ++PPH++AI D AYRSMLQ +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 48/54 (88%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCVV+NPYK+LPIY+EKI++ YKG KR ++PPH++AI D AYRSMLQ +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 48/54 (88%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCVV+NPYK+LPIY+EKI++ YKG KR ++PPH++AI D AYRSMLQ +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 94.0 bits (232), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/54 (70%), Positives = 48/54 (88%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCVV+NPYK+LPIY+EKI++ YKG KR ++PPH++AI D AYRSMLQ +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 167
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 85.9 bits (211), Expect = 5e-18, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 47/54 (87%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFC+ +NPY+RLPIYT+ ++++Y+G +R ++PPH+F+I DNAY+ MLQ +
Sbjct: 114 TYSGLFCIAINPYRRLPIYTQGLVDKYRGKRRAEMPPHLFSIADNAYQYMLQDR 167
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 82.4 bits (202), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 46/54 (85%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFC+ VNPY+RLPIYT+ ++ +Y+G ++ ++PPH+F++ DNAY++M+ +
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 82.4 bits (202), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 46/54 (85%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFC+ VNPY+RLPIYT+ ++ +Y+G ++ ++PPH+F++ DNAY++M+ +
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 82.4 bits (202), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 46/54 (85%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFC+ VNPY+RLPIYT+ ++ +Y+G ++ ++PPH+F++ DNAY++M+ +
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 82.4 bits (202), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 46/54 (85%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFC+ VNPY+RLPIYT+ ++ +Y+G ++ ++PPH+F++ DNAY++M+ +
Sbjct: 110 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 163
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 82.4 bits (202), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 46/54 (85%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFC+ VNPY+RLPIYT+ ++ +Y+G ++ ++PPH+F++ DNAY++M+ +
Sbjct: 109 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 162
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 46/54 (85%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFC+ VNPY+RLPIYT+ ++ +Y+G ++ ++PPH+F++ DNAY++M+ +
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 46/54 (85%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFC+ VNPY+RLPIYT+ ++ +Y+G ++ ++PPH+F++ DNAY++M+ +
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 81.3 bits (199), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCV VNPYK LP+YT +++ Y+G KR + PPH+F+I+DNAY+ ML +
Sbjct: 116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDR 169
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 79.0 bits (193), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCV VNPYK LP+Y K++ Y+G KR + PPH+F+I+DNAY+ ML +
Sbjct: 114 TYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDR 167
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 128 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 181
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 116 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 169
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 116 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 169
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 116 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 169
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 128 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 181
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 116 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 169
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 128 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 181
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 77.8 bits (190), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 128 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 181
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 75.5 bits (184), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCV VNPY LP+Y ++ Y+G KR + PPH+F+I+DNAY+ ML +
Sbjct: 117 TYSGLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDR 170
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 75.5 bits (184), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCV VNPY LP+Y ++ Y+G KR + PPH+F+I+DNAY+ ML +
Sbjct: 114 TYSGLFCVTVNPYXWLPVYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDR 167
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+K +PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 116 TYSGLFLVAVNPFKIIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 169
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 74.3 bits (181), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+K +PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 116 TYSGLFLVAVNPFKIIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 169
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY G+ V +NPY++LPIY E I+ Y G D+ PH+FA+ + AY+ M
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQM 150
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 58.2 bits (139), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY G+ V +NPY++LPIY E I+ Y G D+ PH+FA+ + AY+ M
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQM 150
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY G+ V +NPY++LPIY E I+ Y G D+ PH+FA+ + AY+ M
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQM 150
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TY G + NP+K L IY E ++ Y G + ++PPH++A+ ++AYRSM Q +
Sbjct: 39 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQ 92
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TY G + NP+K L IY E ++ Y G + ++PPH++A+ ++AYRSM Q +
Sbjct: 39 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQ 92
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 85 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 135
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 87 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 137
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 87 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 137
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 87 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 137
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 88 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 138
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 88 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 138
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 97 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 147
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 97 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 147
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 88 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 138
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 87 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 137
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 87 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 137
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSM 54
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M
Sbjct: 84 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDM 134
>pdb|3G7Q|A Chain A, Crystal Structure Of Valine-Pyruvate Aminotransferase Avta
(Np_462565.1) From Salmonella Typhimurium Lt2 At 1.80 A
Resolution
Length = 417
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 17 YKRLPIYTEKIMERYKGVKRLDVPPHVF 44
+K LPI TE + +R K L VP H F
Sbjct: 346 FKDLPITTELLYQRLKARGVLXVPGHYF 373
>pdb|2J3L|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3L|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With A Prolyl-Adenylate Analogue
('5'-O-(N-(L-Prolyl)- Sulfamoyl)adenosine)
pdb|2J3M|A Chain A, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
pdb|2J3M|B Chain B, Prolyl-Trna Synthetase From Enterococcus Faecalis
Complexed With Atp, Manganese And Prolinol
Length = 572
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 4 KTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKR 36
+T++ L +N YKRLP+ +I +Y+ KR
Sbjct: 112 ETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR 144
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,165,056
Number of Sequences: 62578
Number of extensions: 69126
Number of successful extensions: 223
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 62
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)