Query psy15463
Match_columns 68
No_of_seqs 152 out of 1008
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:42:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 99.9 7.9E-27 1.7E-31 176.8 5.7 65 1-65 109-173 (1930)
2 COG5022 Myosin heavy chain [Cy 99.9 1.5E-24 3.3E-29 160.8 7.5 66 1-66 93-158 (1463)
3 cd01380 MYSc_type_V Myosin mot 99.9 3.2E-24 7E-29 152.9 7.9 65 1-65 27-91 (691)
4 cd01378 MYSc_type_I Myosin mot 99.9 3.2E-24 6.9E-29 152.6 7.7 66 1-66 27-92 (674)
5 cd01387 MYSc_type_XV Myosin mo 99.9 4.7E-24 1E-28 151.8 7.9 65 1-65 28-92 (677)
6 cd01381 MYSc_type_VII Myosin m 99.9 4.6E-24 1E-28 151.8 7.8 66 1-66 27-92 (671)
7 cd01377 MYSc_type_II Myosin mo 99.9 5.7E-24 1.2E-28 151.7 7.7 65 1-65 32-96 (693)
8 cd01384 MYSc_type_XI Myosin mo 99.9 8.7E-24 1.9E-28 150.4 7.7 65 1-65 28-93 (674)
9 PTZ00014 myosin-A; Provisional 99.9 9.5E-24 2.1E-28 152.5 7.9 65 1-65 123-188 (821)
10 PF00063 Myosin_head: Myosin h 99.9 4.3E-24 9.2E-29 151.6 5.9 66 1-66 26-91 (689)
11 cd01386 MYSc_type_XVIII Myosin 99.9 1.1E-23 2.4E-28 151.5 7.8 65 1-65 27-91 (767)
12 cd01385 MYSc_type_IX Myosin mo 99.9 1.2E-23 2.6E-28 150.0 7.9 66 1-66 34-100 (692)
13 cd00124 MYSc Myosin motor doma 99.9 2.8E-23 6.1E-28 147.8 8.1 65 1-65 27-91 (679)
14 cd01382 MYSc_type_VI Myosin mo 99.9 5.6E-23 1.2E-27 147.1 7.9 65 1-65 31-96 (717)
15 smart00242 MYSc Myosin. Large 99.9 6.7E-23 1.5E-27 145.9 7.1 65 1-65 33-97 (677)
16 cd01383 MYSc_type_VIII Myosin 99.9 3.2E-22 7E-27 142.5 7.8 63 1-65 35-97 (677)
17 cd01379 MYSc_type_III Myosin m 99.9 3.6E-22 7.9E-27 141.8 7.8 65 1-65 27-91 (653)
18 KOG0162|consensus 99.9 4.8E-22 1E-26 141.9 6.5 66 1-66 45-110 (1106)
19 KOG0164|consensus 99.9 5.8E-22 1.3E-26 141.1 6.5 65 1-65 35-99 (1001)
20 KOG0163|consensus 99.8 1.3E-20 2.9E-25 135.1 3.0 66 1-66 84-150 (1259)
21 KOG0160|consensus 99.7 6.1E-17 1.3E-21 117.4 5.1 63 2-65 36-99 (862)
22 KOG4229|consensus 99.6 2.6E-16 5.6E-21 116.1 4.2 66 2-67 89-155 (1062)
23 cd01363 Motor_domain Myosin an 80.3 4.1 8.9E-05 24.9 3.9 23 43-66 8-30 (186)
24 KOG2884|consensus 54.3 15 0.00032 24.2 2.5 24 45-68 92-115 (259)
25 PHA00198 nonstructural protein 49.4 14 0.0003 20.4 1.6 27 38-64 19-45 (86)
26 KOG0925|consensus 49.1 29 0.00062 25.8 3.5 48 11-66 21-68 (699)
27 PF09035 Tn916-Xis: Excisionas 43.6 18 0.0004 19.1 1.4 25 44-68 23-47 (67)
28 COG5353 Uncharacterized protei 42.9 19 0.00041 22.2 1.6 26 42-68 58-84 (161)
29 PF08874 DUF1835: Domain of un 39.2 50 0.0011 18.6 3.0 25 44-68 70-94 (124)
30 PF08248 Tryp_FSAP: Tryptophyl 36.1 24 0.00051 12.5 0.8 8 16-23 3-10 (12)
31 smart00548 IRO Motif in Iroquo 35.7 16 0.00035 15.8 0.4 14 39-52 4-17 (26)
32 smart00413 ETS erythroblast tr 32.9 45 0.00097 18.6 2.0 17 52-68 9-25 (87)
33 KOG1552|consensus 31.8 98 0.0021 20.7 3.7 27 40-66 108-135 (258)
34 COG5148 RPN10 26S proteasome r 31.2 50 0.0011 21.4 2.2 24 45-68 92-115 (243)
35 PF14736 N_Asn_amidohyd: Prote 29.9 1.8E+02 0.0038 19.6 5.6 48 10-57 193-248 (274)
36 COG4531 ZnuA ABC-type Zn2+ tra 26.6 72 0.0016 21.8 2.4 28 37-68 56-83 (318)
37 PF00178 Ets: Ets-domain; Int 25.6 24 0.00052 19.4 0.1 16 53-68 10-25 (85)
38 KOG3806|consensus 24.7 65 0.0014 20.3 1.9 16 53-68 77-92 (177)
39 PF10006 DUF2249: Uncharacteri 24.5 29 0.00062 17.8 0.2 22 7-28 25-46 (69)
40 PF10622 Ehbp: Energy-converti 23.0 1.3E+02 0.0028 16.4 2.6 24 10-33 22-50 (78)
41 PF12996 DUF3880: DUF based on 21.0 47 0.001 17.6 0.7 55 14-68 16-74 (79)
42 KOG1106|consensus 20.7 50 0.0011 20.8 0.8 38 13-50 65-109 (177)
No 1
>KOG0161|consensus
Probab=99.93 E-value=7.9e-27 Score=176.81 Aligned_cols=65 Identities=57% Similarity=1.016 Sum_probs=63.7
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
++||||+|.+||+||||+++|+|++++++.|+|+++.++|||||+||+.||++|+.+|+||||++
T Consensus 109 ~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLi 173 (1930)
T KOG0161|consen 109 DLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILI 173 (1930)
T ss_pred ChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEee
Confidence 58999999999999999999999999999999999999999999999999999999999999987
No 2
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.91 E-value=1.5e-24 Score=160.77 Aligned_cols=66 Identities=45% Similarity=0.764 Sum_probs=64.1
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEEe
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTRELW 66 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~ 66 (68)
++||||+|.+|||||||+.+|+|++++++.|.++++.+++||||+||+.||+.|+.+++|||||+-
T Consensus 93 ~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiIS 158 (1463)
T COG5022 93 GQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIIS 158 (1463)
T ss_pred CceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999999973
No 3
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.91 E-value=3.2e-24 Score=152.92 Aligned_cols=65 Identities=38% Similarity=0.756 Sum_probs=63.1
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+||||+|++|||||||+.+|+|+++.++.|+++...++|||+|++|++||+.|+.+++|||||+
T Consensus 27 ~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIii 91 (691)
T cd01380 27 KQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIV 91 (691)
T ss_pred CCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 36999999999999999999999999999999999999999999999999999999999999997
No 4
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.91 E-value=3.2e-24 Score=152.63 Aligned_cols=66 Identities=42% Similarity=0.726 Sum_probs=63.4
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEEe
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTRELW 66 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~ 66 (68)
.+|||++|++|||||||+.+|+|+++.++.|+++...++|||+|++|++||+.|+.+++|||||+-
T Consensus 27 ~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiis 92 (674)
T cd01378 27 DLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVIIS 92 (674)
T ss_pred CCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEE
Confidence 379999999999999999999999999999999999999999999999999999999999999983
No 5
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.90 E-value=4.7e-24 Score=151.83 Aligned_cols=65 Identities=37% Similarity=0.579 Sum_probs=62.9
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+|||++|++|||||||+.+|+|+++.++.|+++...++|||+|++|++||+.|+.+++|||||+
T Consensus 28 ~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIii 92 (677)
T cd01387 28 NLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVII 92 (677)
T ss_pred CCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 36999999999999999999999999999999998889999999999999999999999999998
No 6
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.90 E-value=4.6e-24 Score=151.76 Aligned_cols=66 Identities=41% Similarity=0.629 Sum_probs=63.3
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEEe
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTRELW 66 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~ 66 (68)
.+||||+|++|||||||+.+|+|+++.++.|+++...++|||+|++|++||+.|+.+++|||||+-
T Consensus 27 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiis 92 (671)
T cd01381 27 KLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIIIS 92 (671)
T ss_pred CCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCCceEEEE
Confidence 369999999999999999999999999999999988999999999999999999999999999983
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.90 E-value=5.7e-24 Score=151.70 Aligned_cols=65 Identities=62% Similarity=1.047 Sum_probs=62.9
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+|||++|++|||||||+.+|+|++++++.|+++...++|||+|++|++||+.|+.+++|||||+
T Consensus 32 ~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m~~~~~~QsIii 96 (693)
T cd01377 32 DLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSILI 96 (693)
T ss_pred CCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 36999999999999999999999999999999998899999999999999999999999999997
No 8
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.90 E-value=8.7e-24 Score=150.43 Aligned_cols=65 Identities=40% Similarity=0.725 Sum_probs=62.9
Q ss_pred CeEEEeecCcEEEecCCCCCC-CCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+|||++|++||+||||+.+| +|+++.++.|+++...++|||+|++|++||+.|+.+++|||||+
T Consensus 28 ~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIii 93 (674)
T cd01384 28 NEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILV 93 (674)
T ss_pred CCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEE
Confidence 369999999999999999999 99999999999999999999999999999999999999999998
No 9
>PTZ00014 myosin-A; Provisional
Probab=99.90 E-value=9.5e-24 Score=152.53 Aligned_cols=65 Identities=26% Similarity=0.366 Sum_probs=61.4
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCC-CCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGV-KRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~-~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+||||+|++|||||||+.+|+|++++++.|+++ ...++|||||++|++||+.|+.+++|||||+
T Consensus 123 ~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIii 188 (821)
T PTZ00014 123 NQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIV 188 (821)
T ss_pred CCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 3799999999999999999999999999999985 4678999999999999999999999999997
No 10
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.90 E-value=4.3e-24 Score=151.64 Aligned_cols=66 Identities=41% Similarity=0.809 Sum_probs=56.0
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEEe
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTRELW 66 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~ 66 (68)
.+|||++|++||+||||+.+|+|+++.++.|+++...++|||||++|++||+.|+++++|||||+-
T Consensus 26 ~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~~~~Q~Iiis 91 (689)
T PF00063_consen 26 DLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRTRQNQSIIIS 91 (689)
T ss_dssp T--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred CCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhcccccccccccccceeec
Confidence 369999999999999999999999999999999999999999999999999999999999999984
No 11
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.90 E-value=1.1e-23 Score=151.46 Aligned_cols=65 Identities=29% Similarity=0.586 Sum_probs=62.9
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+||||+|++|||||||+.+++|++++++.|+++...++|||||++|++||+.|+.+++|||||+
T Consensus 27 ~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIii 91 (767)
T cd01386 27 NLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSIIF 91 (767)
T ss_pred CCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEE
Confidence 36999999999999999999999999999999998899999999999999999999999999997
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.90 E-value=1.2e-23 Score=150.03 Aligned_cols=66 Identities=39% Similarity=0.590 Sum_probs=62.3
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCC-CCCCCCchhhhHHHHHHHHHhCCCCCeEEEe
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVK-RLDVPPHVFAITDNAYRSMLQGKTALTRELW 66 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~-~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~ 66 (68)
.+|||++|++|||||||+.+|+|++++++.|+++. ..++|||||++|++||+.|+.+++|||||+-
T Consensus 34 ~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIiis 100 (692)
T cd01385 34 GHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVIS 100 (692)
T ss_pred CCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEe
Confidence 36999999999999999999999999999999876 7789999999999999999999999999973
No 13
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.89 E-value=2.8e-23 Score=147.82 Aligned_cols=65 Identities=42% Similarity=0.762 Sum_probs=63.0
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+|||++|++|||||||+.+|+|+++.++.|+++...++|||+|++|++||+.|+.+++|||||+
T Consensus 27 ~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIii 91 (679)
T cd00124 27 DLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIII 91 (679)
T ss_pred CCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 36999999999999999999999999999999999999999999999999999999999999997
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.88 E-value=5.6e-23 Score=147.05 Aligned_cols=65 Identities=35% Similarity=0.597 Sum_probs=62.7
Q ss_pred CeEEEeecCcEEEecCCCCCC-CCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+|||++|++||+||||+.+| +|+++.++.|+++...++|||+|++|++||+.|+.+++|||||+
T Consensus 31 ~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIii 96 (717)
T cd01382 31 DKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSIIV 96 (717)
T ss_pred CCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 369999999999999999998 99999999999999999999999999999999999999999997
No 15
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.88 E-value=6.7e-23 Score=145.90 Aligned_cols=65 Identities=51% Similarity=0.883 Sum_probs=62.9
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+|||++|++|||||||+.+++|++++++.|+++...++|||+|++|++||+.|+.+++|||||+
T Consensus 33 ~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIii 97 (677)
T smart00242 33 DLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIII 97 (677)
T ss_pred CCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 36999999999999999999999999999999998899999999999999999999999999998
No 16
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.87 E-value=3.2e-22 Score=142.50 Aligned_cols=63 Identities=32% Similarity=0.572 Sum_probs=59.1
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+|||++|++||+||||+.+++|+++.++.|+++. ..|||+|++|++||+.|+.+++|||||+
T Consensus 35 ~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~--~~~PHifaiA~~Ay~~m~~~~~~QsIii 97 (677)
T cd01383 35 DLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKS--NDSPHVYAIADTAYNEMMRDEVNQSIII 97 (677)
T ss_pred CCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCC--CCCCCHHHHHHHHHHHHHHcCCCceEEE
Confidence 37999999999999999999999999999998754 4699999999999999999999999997
No 17
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.87 E-value=3.6e-22 Score=141.82 Aligned_cols=65 Identities=35% Similarity=0.586 Sum_probs=62.6
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.+||||+|++||+||||+.+++|+++.++.|.++...+.|||+|++|+.||+.|+..++||||++
T Consensus 27 ~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIii 91 (653)
T cd01379 27 NQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIVI 91 (653)
T ss_pred CCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCceEEE
Confidence 36999999999999999999999999999999988889999999999999999999999999987
No 18
>KOG0162|consensus
Probab=99.86 E-value=4.8e-22 Score=141.87 Aligned_cols=66 Identities=36% Similarity=0.620 Sum_probs=63.5
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEEe
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTRELW 66 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~ 66 (68)
+.||||+|++||+||||+.+|+|+++.++.|.|+...+.|||||++|+++|++|..+.||||+|+-
T Consensus 45 ~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY~nM~~~~EnQCVIIS 110 (1106)
T KOG0162|consen 45 GYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMYRNMKIDNENQCVIIS 110 (1106)
T ss_pred CceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHHHHhhhccccceEEEe
Confidence 369999999999999999999999999999999999999999999999999999999999999973
No 19
>KOG0164|consensus
Probab=99.86 E-value=5.8e-22 Score=141.09 Aligned_cols=65 Identities=40% Similarity=0.639 Sum_probs=63.3
Q ss_pred CeEEEeecCcEEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
+.||||+|++||+||||+.++||++++++.|++....+.|||+|++|+.||++|.+.++||||++
T Consensus 35 g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYrslk~r~rDtcI~I 99 (1001)
T KOG0164|consen 35 GRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYRSLKRRSRDTCILI 99 (1001)
T ss_pred CceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHHHHHhccCCeEEEE
Confidence 57999999999999999999999999999999999999999999999999999999999999986
No 20
>KOG0163|consensus
Probab=99.80 E-value=1.3e-20 Score=135.10 Aligned_cols=66 Identities=33% Similarity=0.554 Sum_probs=63.8
Q ss_pred CeEEEeecCcEEEecCCCCCC-CCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEEe
Q psy15463 1 MTWKTYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTRELW 66 (68)
Q Consensus 1 ~~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~ 66 (68)
+.||||+..|||+||||+.++ +|++++...|+|++.+.+|||||+||+.||+.|..-+.+||||+-
T Consensus 84 ~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVS 150 (1259)
T KOG0163|consen 84 DKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVS 150 (1259)
T ss_pred CchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEe
Confidence 469999999999999999999 999999999999999999999999999999999999999999984
No 21
>KOG0160|consensus
Probab=99.67 E-value=6.1e-17 Score=117.45 Aligned_cols=63 Identities=32% Similarity=0.689 Sum_probs=60.8
Q ss_pred eEEEeecCcEEEecCCCCCC-CCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEE
Q psy15463 2 TWKTYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTREL 65 (68)
Q Consensus 2 ~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~ 65 (68)
.||||.|.+|||||||+.+| +|+++.+..|+ ....++.||+|++|+.||+.|..+..|||||+
T Consensus 36 ~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~~m~~~~~~QsIiv 99 (862)
T KOG0160|consen 36 QIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYRDMTPDGVNQSIIV 99 (862)
T ss_pred ccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHHHHHhhhccCCceeee
Confidence 58999999999999999999 99999999999 78889999999999999999999999999997
No 22
>KOG4229|consensus
Probab=99.63 E-value=2.6e-16 Score=116.14 Aligned_cols=66 Identities=32% Similarity=0.520 Sum_probs=64.0
Q ss_pred eEEEeecCcEEEecCCCCCC-CCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEEec
Q psy15463 2 TWKTYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTRELWV 67 (68)
Q Consensus 2 ~iYT~~G~iLiavNP~k~l~-~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~~ 67 (68)
.||||.|.+|+++|||+.++ +|..+.++.|.++..++.|||+|++|+.+|++|++..+||||++|.
T Consensus 89 ~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y~~m~~~~~~QcivisG 155 (1062)
T KOG4229|consen 89 PIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAYQDMLREKEDQCIVISG 155 (1062)
T ss_pred CceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHHHhhhhhccceeEEEec
Confidence 58999999999999999999 9999999999989999999999999999999999999999999985
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=80.26 E-value=4.1 Score=24.94 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHhCCCCCeEEEe
Q psy15463 43 VFAITDNAYRSMLQGKTALTRELW 66 (68)
Q Consensus 43 iy~ia~~ay~~m~~~~~~Qsi~~~ 66 (68)
+|.....+...++ ++.|+||+.+
T Consensus 8 vf~~~~~~v~~~~-~G~n~~i~~y 30 (186)
T cd01363 8 VFRDVGPLLQSAL-DGYNVCIFAY 30 (186)
T ss_pred HHHHHHHHHHHHh-CCcceeEEEE
Confidence 8888888887776 5789999865
No 24
>KOG2884|consensus
Probab=54.30 E-value=15 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHhCCCCCeEEEecC
Q psy15463 45 AITDNAYRSMLQGKTALTRELWVG 68 (68)
Q Consensus 45 ~ia~~ay~~m~~~~~~Qsi~~~~~ 68 (68)
.+|+.++.+=....+.|.||++||
T Consensus 92 ~iA~lalkhRqnk~~~~riVvFvG 115 (259)
T KOG2884|consen 92 QIAQLALKHRQNKNQKQRIVVFVG 115 (259)
T ss_pred HHHHHHHHhhcCCCcceEEEEEec
Confidence 455555544333334499999998
No 25
>PHA00198 nonstructural protein
Probab=49.45 E-value=14 Score=20.41 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=21.8
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCeEE
Q psy15463 38 DVPPHVFAITDNAYRSMLQGKTALTRE 64 (68)
Q Consensus 38 ~~~PHiy~ia~~ay~~m~~~~~~Qsi~ 64 (68)
..+-|--.-|.++|+.|..+.-+|+++
T Consensus 19 pF~~~~~gaAiR~F~d~v~D~~skn~~ 45 (86)
T PHA00198 19 PFFMQATGAAIRAFSDMVNDDPSKNQF 45 (86)
T ss_pred cccccccHHHHHHHHHHHccCcchhhh
Confidence 455677888999999999997777664
No 26
>KOG0925|consensus
Probab=49.10 E-value=29 Score=25.79 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=30.7
Q ss_pred EEEecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhCCCCCeEEEe
Q psy15463 11 CVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTALTRELW 66 (68)
Q Consensus 11 LiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~ 66 (68)
..++|||...| |++..-+.++ .+.++|-+-+ -+..|..-..||+|||-
T Consensus 21 ~k~~Npf~~~p-~s~rY~~ilk--~R~~LPvw~~-----k~~F~~~l~~nQ~~v~v 68 (699)
T KOG0925|consen 21 AKAINPFNGKP-YSQRYYDILK--KRRELPVWEQ-----KEEFLKLLLNNQIIVLV 68 (699)
T ss_pred hhhcCCCCCCc-CcHHHHHHHH--HHhcCchHHh-----HHHHHHHHhcCceEEEE
Confidence 34599998887 6666555554 3445554433 24456667889999873
No 27
>PF09035 Tn916-Xis: Excisionase from transposon Tn916; InterPro: IPR015122 The phage-encoded excisionase protein Tn916-Xis adopts a winged-helix structure that consists of a three-stranded anti-parallel beta-sheet that packs against a helix-turn-helix (HTH) motif and a third C-terminal alpha-helix. It is encoded for by Tn916, which also codes for the integrase Tn916-Int. The protein interacts with DNA by the insertion of helix alpha-2 into the major groove and the contact of the hairpin that connects strands beta-2 and beta-3 with the adjacent phosphodiester backbone and/or minor groove. Tn916-Xis stimulates phage excision and inhibits viral integration by stabilising distorted DNA structures []. ; PDB: 1Y6U_A.
Probab=43.58 E-value=18 Score=19.10 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHhCCCCCeEEEecC
Q psy15463 44 FAITDNAYRSMLQGKTALTRELWVG 68 (68)
Q Consensus 44 y~ia~~ay~~m~~~~~~Qsi~~~~~ 68 (68)
|.+..+-.+.|..+..|---++|+|
T Consensus 23 ~gIG~~klr~l~~~~~~~~f~~~~G 47 (67)
T PF09035_consen 23 FGIGEKKLRELAEENPDCPFVLWIG 47 (67)
T ss_dssp T-S-HHHHHHHHHH-TT-SSEEEET
T ss_pred hCccHHHHHHHHHhCCCCCEEEEEC
Confidence 7788888899985555666689988
No 28
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.88 E-value=19 Score=22.24 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=16.6
Q ss_pred chhhhHHHHHHH-HHhCCCCCeEEEecC
Q psy15463 42 HVFAITDNAYRS-MLQGKTALTRELWVG 68 (68)
Q Consensus 42 Hiy~ia~~ay~~-m~~~~~~Qsi~~~~~ 68 (68)
.+|.. ..+|.. .-.+.+++.|++|||
T Consensus 58 ~~y~G-~e~YYvi~G~nk~~e~i~VwVp 84 (161)
T COG5353 58 DLYNG-KEVYYVIVGLNKKGEEIIVWVP 84 (161)
T ss_pred EEecC-cEEEEEEEecCCCCcEEEEEec
Confidence 34444 333333 345789999999997
No 29
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=39.22 E-value=50 Score=18.61 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHhCCCCCeEEEecC
Q psy15463 44 FAITDNAYRSMLQGKTALTRELWVG 68 (68)
Q Consensus 44 y~ia~~ay~~m~~~~~~Qsi~~~~~ 68 (68)
..-.+..++.+..-.++..|++|+|
T Consensus 70 ~~~~~~~~~~l~~l~~~~~I~iW~~ 94 (124)
T PF08874_consen 70 EQRFEQELKRLEELPEDDPIVIWYG 94 (124)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 3444455555656666779999986
No 30
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=36.08 E-value=24 Score=12.48 Aligned_cols=8 Identities=50% Similarity=1.057 Sum_probs=5.0
Q ss_pred CCCCCCCC
Q psy15463 16 PYKRLPIY 23 (68)
Q Consensus 16 P~k~l~~y 23 (68)
||...|+|
T Consensus 3 pfw~ppiy 10 (12)
T PF08248_consen 3 PFWPPPIY 10 (12)
T ss_pred ccCCCCcc
Confidence 66666665
No 31
>smart00548 IRO Motif in Iroquois-class homeodomain proteins (only). Unknown function.
Probab=35.66 E-value=16 Score=15.84 Aligned_cols=14 Identities=21% Similarity=0.581 Sum_probs=11.1
Q ss_pred CCCchhhhHHHHHH
Q psy15463 39 VPPHVFAITDNAYR 52 (68)
Q Consensus 39 ~~PHiy~ia~~ay~ 52 (68)
..|.||++|+-|-.
T Consensus 4 ~KPKIWSLAetAts 17 (26)
T smart00548 4 AKPKIWSLADTATS 17 (26)
T ss_pred CCCceeeHHHhhhc
Confidence 35899999998754
No 32
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=32.90 E-value=45 Score=18.62 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=14.1
Q ss_pred HHHHhCCCCCeEEEecC
Q psy15463 52 RSMLQGKTALTRELWVG 68 (68)
Q Consensus 52 ~~m~~~~~~Qsi~~~~~ 68 (68)
..|+.+.+++.+|-|++
T Consensus 9 ~~LL~d~~~~~~I~W~~ 25 (87)
T smart00413 9 LDLLLDPENGDIIRWTD 25 (87)
T ss_pred HHHHcCccCCCeEEeeC
Confidence 46788888999999975
No 33
>KOG1552|consensus
Probab=31.79 E-value=98 Score=20.67 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=23.6
Q ss_pred CCchhhhHHHHHHHHHhCC-CCCeEEEe
Q psy15463 40 PPHVFAITDNAYRSMLQGK-TALTRELW 66 (68)
Q Consensus 40 ~PHiy~ia~~ay~~m~~~~-~~Qsi~~~ 66 (68)
.-++|+=.+.+|..|+++. .+..|+||
T Consensus 108 E~n~y~Di~avye~Lr~~~g~~~~Iil~ 135 (258)
T KOG1552|consen 108 ERNLYADIKAVYEWLRNRYGSPERIILY 135 (258)
T ss_pred cccchhhHHHHHHHHHhhcCCCceEEEE
Confidence 3589999999999999988 57789998
No 34
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=50 Score=21.44 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHhCCCCCeEEEecC
Q psy15463 45 AITDNAYRSMLQGKTALTRELWVG 68 (68)
Q Consensus 45 ~ia~~ay~~m~~~~~~Qsi~~~~~ 68 (68)
.+|+.++.+--...+.|.||.+||
T Consensus 92 qiaql~lkhR~nk~q~qriVaFvg 115 (243)
T COG5148 92 QIAQLILKHRDNKGQRQRIVAFVG 115 (243)
T ss_pred HHHHHHHhcccCCccceEEEEEec
Confidence 344444433333445699999997
No 35
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase
Probab=29.90 E-value=1.8e+02 Score=19.59 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=35.2
Q ss_pred cEEEecCCCCCCCC--------cHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhC
Q psy15463 10 FCVVVNPYKRLPIY--------TEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQG 57 (68)
Q Consensus 10 iLiavNP~k~l~~y--------~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~ 57 (68)
-.+.|.||.+.|.- +++..-.+..++..-.|||-..--.++++.|...
T Consensus 193 ~~l~I~Pf~~~p~~~~~~~l~~~D~~iL~~lSTSP~aEpp~Fv~~ir~~l~fl~~h 248 (274)
T PF14736_consen 193 DQLRIGPFHWRPFPHADFWLSQSDSEILQYLSTSPEAEPPHFVEHIRSTLRFLQEH 248 (274)
T ss_pred CeEEECCCcCCCccChHHHhhCCHHHHHHhcCCCcCCCCchHHHHHHHHHHHHHHC
Confidence 46678899877633 3555556667777888999888888888887764
No 36
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=26.59 E-value=72 Score=21.82 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=18.6
Q ss_pred CCCCCchhhhHHHHHHHHHhCCCCCeEEEecC
Q psy15463 37 LDVPPHVFAITDNAYRSMLQGKTALTRELWVG 68 (68)
Q Consensus 37 ~~~~PHiy~ia~~ay~~m~~~~~~Qsi~~~~~ 68 (68)
....||-|++-..--+.+. .=-.|+|||
T Consensus 56 ~gASpHdYsLrPSDv~rlq----~Adlv~WvG 83 (318)
T COG4531 56 GGASPHDYSLRPSDVKRLQ----SADLVVWVG 83 (318)
T ss_pred CCCCcccccCChhHHHHhh----cCCEEEEEC
Confidence 3456999988765444443 334789998
No 37
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=25.59 E-value=24 Score=19.40 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=13.7
Q ss_pred HHHhCCCCCeEEEecC
Q psy15463 53 SMLQGKTALTRELWVG 68 (68)
Q Consensus 53 ~m~~~~~~Qsi~~~~~ 68 (68)
.|+.|..+..+|-|+|
T Consensus 10 ~LL~d~~~~~~I~Wt~ 25 (85)
T PF00178_consen 10 ELLEDPSNSDIIAWTG 25 (85)
T ss_dssp HHHHSGGGTTTEEEEE
T ss_pred HHhcCccCCCeeEeec
Confidence 6788899999999975
No 38
>KOG3806|consensus
Probab=24.73 E-value=65 Score=20.32 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=14.3
Q ss_pred HHHhCCCCCeEEEecC
Q psy15463 53 SMLQGKTALTRELWVG 68 (68)
Q Consensus 53 ~m~~~~~~Qsi~~~~~ 68 (68)
.++.|.+++.||=|.|
T Consensus 77 eLl~d~~~~~~I~Wtg 92 (177)
T KOG3806|consen 77 ELLQDESNAHIIAWTG 92 (177)
T ss_pred HHHhCcccCCeeEEeC
Confidence 6788999999999987
No 39
>PF10006 DUF2249: Uncharacterized conserved protein (DUF2249); InterPro: IPR018720 This domain is found in a number of hypothetical bacterial and archaeal proteins with no known function. It is also found in proteins described as cupin 2 and hemerythrin. It represents a conserved region that shows distant similarity to the SirA protein (see IPR001455 from INTERPRO).
Probab=24.49 E-value=29 Score=17.81 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=17.0
Q ss_pred ecCcEEEecCCCCCCCCcHHHH
Q psy15463 7 SGLFCVVVNPYKRLPIYTEKIM 28 (68)
Q Consensus 7 ~G~iLiavNP~k~l~~y~~~~~ 28 (68)
.|..|..+|++.+.|+|..-..
T Consensus 25 ~Ge~l~lv~d~~P~pL~~~l~~ 46 (69)
T PF10006_consen 25 PGETLELVNDHDPRPLYPQLEE 46 (69)
T ss_pred CCCEEEEEeCCCCHHHHHHHHH
Confidence 4778999999999888764433
No 40
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=23.02 E-value=1.3e+02 Score=16.40 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=18.9
Q ss_pred cEEEecCCC-----CCCCCcHHHHHHhhC
Q psy15463 10 FCVVVNPYK-----RLPIYTEKIMERYKG 33 (68)
Q Consensus 10 iLiavNP~k-----~l~~y~~~~~~~y~~ 33 (68)
.+|.+||-. .+|.|+++..+.-+.
T Consensus 22 NvIV~Npt~EpIKidvPv~d~~WIE~Hr~ 50 (78)
T PF10622_consen 22 NVIVGNPTDEPIKIDVPVYDEEWIEEHRK 50 (78)
T ss_pred cEEEeCCCCCCEEeeccccCHHHHHHHHh
Confidence 578889875 358999999988764
No 41
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=21.01 E-value=47 Score=17.55 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=29.8
Q ss_pred ecCCCCCCCCcHHHHHHhhCCCCCCCCCchhhhHHHHHHHHHhC----CCCCeEEEecC
Q psy15463 14 VNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQG----KTALTRELWVG 68 (68)
Q Consensus 14 vNP~k~l~~y~~~~~~~y~~~~~~~~~PHiy~ia~~ay~~m~~~----~~~Qsi~~~~~ 68 (68)
.|++-.+-.++....+.|+.......---..+....-++.+..+ ++-++=|.+||
T Consensus 16 ~~~~~~iFt~D~~~~~~~~~~G~~~V~yLPLAa~~~~~~p~~~~~~~~~~~~~dIsFVG 74 (79)
T PF12996_consen 16 ANSYDYIFTFDRSFVEEYRNLGAENVFYLPLAANPERFRPIPVDPEERKKYECDISFVG 74 (79)
T ss_pred CCCCCEEEEECHHHHHHHHHcCCCCEEEccccCCHHHhCcccCCcccccccCCCEEEeC
Confidence 56666666778888888875432221111134444445555443 45555555555
No 42
>KOG1106|consensus
Probab=20.70 E-value=50 Score=20.85 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=26.4
Q ss_pred EecCCCC--CC-CCcHHHHHHhhCCC----CCCCCCchhhhHHHH
Q psy15463 13 VVNPYKR--LP-IYTEKIMERYKGVK----RLDVPPHVFAITDNA 50 (68)
Q Consensus 13 avNP~k~--l~-~y~~~~~~~y~~~~----~~~~~PHiy~ia~~a 50 (68)
++|++-. +| +|+..+....+-.. ..++.||-|..+..-
T Consensus 65 ~~~~~~si~lP~~fs~~~rn~i~Adp~~vdL~s~~phFY~fg~kl 109 (177)
T KOG1106|consen 65 AINQFVSILLPDIFSEKVRNVIKADPNKVDLRSLCPHFYEFGMKL 109 (177)
T ss_pred hhccceeecCchHHHHHHHHHHhcCcceeeccccccHHHHHHHHH
Confidence 4555532 34 89988888886432 567889999988754
Done!