RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15463
(68 letters)
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 111 bits (279), Expect = 9e-31
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQ 56
TY G + NP+K L IY E ++ Y G + ++PPH++A+ ++AYRSM Q
Sbjct: 39 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQ 90
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 110 bits (276), Expect = 2e-30
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TY G+ V +NPY++LPIY E I+ Y G D+ PH+FA+ + AY+ M + +
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDE 154
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 108 bits (271), Expect = 1e-29
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 108 bits (271), Expect = 1e-29
Identities = 32/54 (59%), Positives = 45/54 (83%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 170
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 107 bits (270), Expect = 1e-29
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCV VNPYK LP+YT +++ Y+G KR + PPH+F+I+DNAY+ ML +
Sbjct: 116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDR 169
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 107 bits (268), Expect = 2e-29
Identities = 39/54 (72%), Positives = 48/54 (88%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFCVV+NPYK+LPIYTE I+E Y+G KR +VPPHV+A+T+ AYRSMLQ +
Sbjct: 91 TYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDR 144
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 105 bits (265), Expect = 6e-29
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 5 TYSGLFCVVVNPYKRLP-IYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TY + VNPY +P IY+ + ++ Y+G +PPHVFAI D A+R M K
Sbjct: 84 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLK 138
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 102 bits (255), Expect = 1e-27
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKTA 60
TY G+ V +NPY++LPIY E I+ Y G D+ PH+FA+ + AY+ M + +
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERN 156
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 97.8 bits (244), Expect = 4e-26
Identities = 28/54 (51%), Positives = 46/54 (85%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
TYSGLFC+ VNPY+RLPIYT+ ++ +Y+G ++ ++PPH+F++ DNAY++M+ +
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 167
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 91.1 bits (226), Expect = 1e-23
Identities = 38/55 (69%), Positives = 48/55 (87%)
Query: 5 TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGKT 59
TYSGLFCVV+NPYK+LPIY+EKI++ YKG KR ++PPH++AI D AYRSMLQ +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDRE 168
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 26.4 bits (58), Expect = 0.76
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 29 ERYKGVKRLDVP-PHVFAITDNAYRSMLQ 56
E + V P FA T AYR+ L
Sbjct: 29 EMISQLTEKGVRVPGGFATTAEAYRAFLA 57
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded
antiparallel beta sheet, alpha helix linker, peptide
binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2
PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Length = 115
Score = 23.5 bits (50), Expect = 5.3
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 2 TWKTYSGLFCVVVNPYKRLPIYTEKIMER 30
TW+T L V K+L Y +K E
Sbjct: 73 TWETEETLKQQNVRGMKKLDNYKKKDQET 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.443
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,096,714
Number of extensions: 51279
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 13
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)