RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15463
         (68 letters)



>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
          (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 94.8 bits (235), Expect = 2e-25
 Identities = 38/54 (70%), Positives = 48/54 (88%)

Query: 5  TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
          TYSGLFCVV+NPYK+LPIY+EKI++ YKG KR ++PPH++AI D AYRSMLQ +
Sbjct: 36 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDR 89


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
          discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 94.4 bits (234), Expect = 3e-25
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 5  TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
          TY G   +  NP+K L IY E  ++ Y G  + ++PPH++A+ ++AYRSM Q +
Sbjct: 31 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQ 84


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 93.6 bits (232), Expect = 5e-25
 Identities = 32/54 (59%), Positives = 42/54 (77%)

Query: 5   TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
           TYSGLFCV VNPYK LP+Y  K++  Y+G KR + PPH+F+I+DNAY+ ML  +
Sbjct: 68  TYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDR 121


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 93.2 bits (231), Expect = 7e-25
 Identities = 32/54 (59%), Positives = 45/54 (83%)

Query: 5   TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
           TYSGLF V VNP+KR+PIYT+++++ +KG +R +V PH+FAI+D AYRSML  +
Sbjct: 70  TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDR 123


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 91.7 bits (227), Expect = 2e-24
 Identities = 28/54 (51%), Positives = 46/54 (85%)

Query: 5   TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
           TYSGLFC+ VNPY+RLPIYT+ ++ +Y+G ++ ++PPH+F++ DNAY++M+  +
Sbjct: 66  TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDR 119


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
          (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 91.4 bits (226), Expect = 3e-24
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 5  TYSGLFCVVVNPYKRLPIYTEKIMERYKGVKRLDVPPHVFAITDNAYRSMLQGK 58
          TY G+  V +NPY++LPIY E I+  Y G    D+ PH+FA+ + AY+ M + +
Sbjct: 39 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDE 92


>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase,
          N-terminal domain {Maize (Zea mays) [TaxId: 4577]}
          Length = 380

 Score = 25.3 bits (54), Expect = 0.54
 Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 37 LDVPPHVFAITDNAYRSMLQGKTALTRELW 66
          L VPP  F ++  A +       AL   LW
Sbjct: 37 LSVPPG-FTVSTEACQQYQDAGCALPAGLW 65


>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase,
          N-terminal domain {Clostridium symbiosum [TaxId: 1512]}
          Length = 375

 Score = 25.0 bits (53), Expect = 0.78
 Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 36 RLDVP-PHVFAITDNAYRSMLQGKTALTRELW 66
           L +P P  F +T  A          +T+E+ 
Sbjct: 30 ILGMPIPQGFTVTTEACTEYYNSGKQITQEIQ 61


>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase,
          N-terminal domain {Trypanosoma brucei [TaxId: 5691]}
          Length = 405

 Score = 24.5 bits (52), Expect = 1.1
 Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)

Query: 36 RLDVP-PHVFAITDNAYRSMLQGKTALTRELW 66
           L +P P  F IT  A ++  + +T + +E+ 
Sbjct: 36 NLGIPVPPGFTITTEACKTYQETET-IPQEVA 66


>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus
          pyogenes [TaxId: 1314]}
          Length = 136

 Score = 23.0 bits (49), Expect = 3.6
 Identities = 5/25 (20%), Positives = 9/25 (36%), Gaps = 3/25 (12%)

Query: 22 IYTEKIMERYK---GVKRLDVPPHV 43
          +Y   + +  K      +LD    V
Sbjct: 4  LYMAVVADHSKRPHHHGQLDGVEAV 28


>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 134

 Score = 22.7 bits (48), Expect = 4.6
 Identities = 4/11 (36%), Positives = 9/11 (81%)

Query: 22 IYTEKIMERYK 32
           Y+EK+++ Y+
Sbjct: 2  AYSEKVIDHYE 12


>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
           {Escherichia coli [TaxId: 562]}
          Length = 796

 Score = 22.3 bits (47), Expect = 7.8
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 16  PYKRLPIYTEKIMERYKGVKRL---DVPPHVFAITDNAY 51
            YKR  +    I+  YK ++     D  P VF     A 
Sbjct: 537 EYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAA 575


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 272,221
Number of extensions: 10211
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 12
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)