BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15467
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 89 LLVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGLQDCYPARFKAIHFINEPVQ 144
LL + + Q +GF + ++ ++ + +L LR M+ LQD +PARFKAIHFI++P
Sbjct: 186 LLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWY 245
Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
+VKPFLK K +++ VHG +L Y + +ILP + F G++
Sbjct: 246 FTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSD-FGGTL 292
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 89 LLVDTKIQYSGFVFLLDWNQTSIYASPTL----LRTMISGLQDCYPARFKAIHFINEPVQ 144
LL + + Q +GF + ++ + + +L LR + LQD +PA FKAIHFI++P
Sbjct: 186 LLENEETQINGFCIIENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWY 245
Query: 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI 192
+VKPFLK K +++ VHG +L Y + +ILP + F G++
Sbjct: 246 FTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSD-FGGTL 292
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 6/107 (5%)
Query: 85 TSGLLLVDTKIQYSGFVFLLD---WNQTSIYA-SPTLLRTMISGLQDCYPARFKAIHFIN 140
TS L++ + + Q +G + D W + + +P++ + + + L D +P + + IH IN
Sbjct: 139 TSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLIN 198
Query: 141 EPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIE 186
EPV + +++KPFL EK +++I +HG N SL + P DILP+E
Sbjct: 199 EPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLE 244
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 61/107 (57%), Gaps = 6/107 (5%)
Query: 85 TSGLLLVDTKIQYSGFVFLLD---WNQTSIYA-SPTLLRTMISGLQDCYPARFKAIHFIN 140
TS L++ + + Q +G + D W + + +P++ + + + L D +P + + IH IN
Sbjct: 123 TSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLIN 182
Query: 141 EPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIE 186
EPV + + +KPFL EK +++I HG N SL + P DILP+E
Sbjct: 183 EPVIFHAVFSXIKPFLTEKIKERIHXHGNNYKQSLLQHFP-DILPLE 228
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 126 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILP 184
Q+ YP R + I+ P + +VKPFL T KI + G + L +P + LP
Sbjct: 214 QNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLP 273
Query: 185 IEIFNGSIIVHGQNLDSLYGANRPSW 210
++ + G+ ++H N D Y ++ W
Sbjct: 274 VK-YGGTSVLHNPN-DKFYYSDIGPW 297
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 126 QDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILP 184
Q+ YP R + I+ P + +VKPFL T KI + G + L +P + LP
Sbjct: 214 QNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLP 273
Query: 185 IEIFNGSIIVHGQNLDSLYGANRPSW 210
++ + G+ ++H N D Y ++ W
Sbjct: 274 VK-YGGTSVLHNPN-DKFYYSDIGPW 297
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 125 LQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDIL 183
++ YP K + + P V L+KPFL E TR KI+V G N + L ++ D +
Sbjct: 178 FEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV 237
Query: 184 PIEIFNGSI 192
P+E + G++
Sbjct: 238 PVE-YGGTM 245
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 125 LQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDIL 183
++ YP K + + P V L+KPFL E TR KI+V G N + L ++ D +
Sbjct: 178 FEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV 237
Query: 184 PIEIFNGSI 192
P+E + G++
Sbjct: 238 PVE-YGGTM 245
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 121 MISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLP 179
+ ++ YP K + + P V L+KPFL E TR KI V G N + L ++
Sbjct: 174 FLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLGANWKEVLLKHIS 233
Query: 180 RDILPIE 186
D +P+E
Sbjct: 234 PDQVPVE 240
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 109 TSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHG 168
+S Y+ + +R Q+ YP R + IN P L KPFL T KI + G
Sbjct: 182 SSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILG 241
Query: 169 QNLD-SLYGYLPRDILPIEI 187
+ L +P + LP++
Sbjct: 242 SSYQKELLKQIPAENLPVKF 261
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 119 RTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKII--------VHGQN 170
+ ++ LQ YP R N P L L+ PF+ TR+K++ V
Sbjct: 223 KEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVKYVPKNE 282
Query: 171 LDSLYG 176
LDSLYG
Sbjct: 283 LDSLYG 288
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
Length = 278
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 6/116 (5%)
Query: 108 QTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVH 167
Q S + LL M +G YP K F N+PV KP KT ++
Sbjct: 141 QESALIADKLLSVMKAG---TYP---KISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSF 194
Query: 168 GQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNAGYRVKR 223
G+ +PRD+ + N + Q + A R + KNAG + R
Sbjct: 195 GKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINR 250
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|P Chain P, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|Y Chain Y, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|G Chain G, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|P Chain P, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|Y Chain Y, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|G Chain G, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OEE|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEH|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OFN|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|P Chain P, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|Y Chain Y, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3ZRY|G Chain G, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|4B2Q|G Chain G, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|GG Chain g, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|3ZIA|G Chain G, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|Q Chain Q, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 278
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 6/116 (5%)
Query: 108 QTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVH 167
Q S + LL M +G YP K F N+PV KP KT ++
Sbjct: 141 QESALIADKLLSVMKAG---TYP---KISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSF 194
Query: 168 GQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNAGYRVKR 223
G+ +PRD+ + N + Q + A R + KNAG + R
Sbjct: 195 GKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINR 250
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 112 YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLAL 151
YAS L + +GL+ YP + K +HF+ ++ LLAL
Sbjct: 40 YASQEQLEDLFAGLEKAYPNQAK-VHFLGRSLEGRNLLAL 78
>pdb|2GSI|A Chain A, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|C Chain C, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|E Chain E, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
pdb|2GSI|G Chain G, Crystal Structure Of A Murine Fab In Complex With An 11
Residue Peptide Derived From Staphylococcal Nuclease
Length = 215
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 95 IQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKA 135
++ SG+ ++ DWNQ P L ++S L+ PARF
Sbjct: 29 VRTSGYSYM-DWNQQKPGQPPRRLIYLVSNLESGVPARFSG 68
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 311
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 6/116 (5%)
Query: 108 QTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVH 167
Q S + LL M +G YP K F N+PV KP KT ++
Sbjct: 174 QESALIADKLLSVMKAG---TYP---KISIFYNDPVSSLSFEPSEKPIFNAKTIEQSPSF 227
Query: 168 GQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKNAGYRVKR 223
G+ +PRD+ + N + Q + A R + KNAG + R
Sbjct: 228 GKFEIDTDANVPRDLFEYTLANQMLTAMAQGYAAEISARRNAMDNASKNAGDMINR 283
>pdb|2Y6S|C Chain C, Structure Of An Ebolavirus-Protective Antibody In Complex
With Its Mucin-Domain Linear Epitope
pdb|2Y6S|L Chain L, Structure Of An Ebolavirus-Protective Antibody In Complex
With Its Mucin-Domain Linear Epitope
Length = 217
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 95 IQYSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKA 135
+ SG+ ++ WNQ P LL ++S L+ PARF
Sbjct: 29 VSTSGYSYM-HWNQQKPGQPPRLLIYLVSNLESGVPARFSG 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,247,164
Number of Sequences: 62578
Number of extensions: 302162
Number of successful extensions: 651
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 17
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)