Query psy15467
Match_columns 241
No_of_seqs 193 out of 1461
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 21:48:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15467.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15467hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r5l_A Alpha-TTP, protein (alp 100.0 1.6E-43 5.6E-48 303.9 8.7 200 3-211 35-255 (262)
2 3hx3_A Retinaldehyde-binding p 100.0 3.9E-42 1.3E-46 304.0 11.0 193 3-203 94-304 (316)
3 1aua_A Phosphatidylinositol tr 100.0 1.1E-37 3.7E-42 272.8 8.4 189 3-193 54-267 (296)
4 1olm_A SEC14-like protein 2; l 100.0 8.7E-37 3E-41 277.8 6.6 186 3-194 37-248 (403)
5 3q8g_A CRAL-TRIO domain-contai 100.0 2.7E-36 9.1E-41 267.0 5.5 187 3-193 63-282 (320)
6 3pg7_A Neurofibromin; SEC lipi 99.1 5.1E-10 1.8E-14 95.5 10.0 125 48-184 18-145 (256)
7 3peg_A Neurofibromin; SEC14 do 98.9 4.9E-09 1.7E-13 90.9 7.8 124 48-183 37-163 (290)
8 3sbx_A Putative uncharacterize 49.5 18 0.00062 28.6 4.3 62 115-179 122-188 (189)
9 2k44_A Hsapbk, K+-channel volt 49.2 3.6 0.00012 22.0 0.0 6 5-10 15-20 (28)
10 3qua_A Putative uncharacterize 46.7 21 0.00072 28.5 4.2 64 114-180 130-198 (199)
11 2q3l_A Uncharacterized protein 45.6 82 0.0028 22.7 7.2 58 100-159 54-111 (126)
12 1v92_A NSFL1 cofactor P47; 3-h 40.6 7.9 0.00027 22.9 0.6 19 4-22 23-41 (46)
13 3e21_A HFAF1, FAS-associated f 37.6 13 0.00046 22.3 1.3 19 4-22 24-42 (45)
14 3mvn_A UDP-N-acetylmuramate:L- 36.1 73 0.0025 23.9 5.8 39 97-142 34-72 (163)
15 2a33_A Hypothetical protein; s 35.8 46 0.0016 26.7 4.7 63 114-179 122-189 (215)
16 2oo3_A Protein involved in cat 35.5 17 0.00058 30.7 2.1 33 129-161 233-265 (283)
17 2dal_A Protein KIAA0794; FAS a 33.8 13 0.00043 23.8 0.8 19 4-22 33-51 (62)
18 1z96_A DNA-damage, UBA-domain 33.3 12 0.00041 21.2 0.6 18 5-22 22-39 (40)
19 1sbo_A Putative anti-sigma fac 30.7 1.2E+02 0.0041 20.2 7.0 50 101-152 46-95 (110)
20 3t6o_A Sulfate transporter/ant 30.1 1.2E+02 0.0042 21.0 5.9 66 99-172 48-113 (121)
21 1ify_A HHR23A, UV excision rep 28.9 16 0.00055 22.1 0.6 19 4-22 25-43 (49)
22 2dzl_A Protein FAM100B; UBA-li 28.6 17 0.0006 23.6 0.8 18 5-22 36-53 (66)
23 2ka5_A Putative anti-sigma fac 26.5 1.7E+02 0.0057 20.5 9.3 66 100-174 53-118 (125)
24 4hyl_A Stage II sporulation pr 24.9 1.4E+02 0.0047 20.5 5.3 64 101-173 44-107 (117)
25 3ny7_A YCHM protein, sulfate t 24.5 1.8E+02 0.006 20.2 5.8 50 100-152 47-96 (118)
26 2dam_A ETEA protein; KIAA0887, 24.5 17 0.00059 23.6 0.2 19 4-22 37-55 (67)
27 1ydh_A AT5G11950; structural g 22.3 1.1E+02 0.0038 24.4 4.7 62 114-178 118-184 (216)
28 2kln_A Probable sulphate-trans 21.7 2.1E+02 0.0072 20.0 5.8 49 100-152 49-99 (130)
29 1th8_B Anti-sigma F factor ant 21.1 2E+02 0.0067 19.3 7.0 65 100-173 44-108 (116)
30 2bwb_A Ubiquitin-like protein 20.4 23 0.00078 21.2 0.1 19 4-22 25-43 (46)
No 1
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=1.6e-43 Score=303.95 Aligned_cols=200 Identities=25% Similarity=0.335 Sum_probs=169.7
Q ss_pred ccchhhhcCCCChhhHhhcCcCccccccc--------------ccccCCCcccccCCCCCCCCCCeEEEEEeccCCCCCC
Q psy15467 3 SMGKKLRRDTIDQERPLRSLPVPAQLVES--------------PLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEP 68 (241)
Q Consensus 3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~--------------~~l~~g~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~ 68 (241)
.|+||||||+||+++|.+||+++.+|+.+ +.++.|...+++ |.|++||||++++++..++..+
T Consensus 35 ~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~---g~D~~GrpV~i~~~~~~d~~~~ 111 (262)
T 1r5l_A 35 FLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLR---SRDPTGSKVLIYRIAHWDPKVF 111 (262)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECS---SCCTTCCEEEEEEGGGCCTTTS
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCC---CcCCCCCEEEEEeccccCcccC
Confidence 68999999999999999999888888642 122446554443 3679999999999999887766
Q ss_pred chhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc----ccCHHHHHHHHHHHHhhhhhhcceEEEEeCChH
Q psy15467 69 NVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQ 144 (241)
Q Consensus 69 ~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~----~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~ 144 (241)
+....+ ...+.++|.++.+++.+++|+++|+|++|+|+ +++++.+|.++.++|++||+|++++||||+|++
T Consensus 112 ~~~~~~-----r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~ 186 (262)
T 1r5l_A 112 TAYDVF-----RVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVI 186 (262)
T ss_dssp CHHHHH-----HHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGG
T ss_pred CHHHHH-----HHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHH
Confidence 543322 23345678777776678899999999999996 358899999999999999999999999999999
Q ss_pred HHHHHHHHhhhcChhhcCceEEeCCCh-HHHhccCCCCCCCcccCCC--ccccchhhHHHHhhhcCCCcc
Q psy15467 145 VDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIEIFNG--SIIVHGQNLDSLYGANRPSWP 211 (241)
Q Consensus 145 ~~~~~~lik~fl~~k~~~ki~~~~~~~-~~L~~~i~~~~LP~eyGG~--~~~~~~~~~~~~~~~~~~~~~ 211 (241)
|+++|+++||||+++|++||+||+++. ++|.++|| ++||++|||+ ++.++++.|.+.+.++++||.
T Consensus 187 f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~~yGG~~~~~~~~~~~w~~~l~~~~~~~~ 255 (262)
T 1r5l_A 187 FHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPLEYGGEEFSMEDICQEWTNFIMKSEDYLS 255 (262)
T ss_dssp GHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCGGGTCSSCCHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcHhhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997664 79999999 9999999996 567888999999999999995
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=3.9e-42 Score=303.99 Aligned_cols=193 Identities=23% Similarity=0.300 Sum_probs=165.5
Q ss_pred ccchhhhcCCCChhhHhhcCcCccccccc--------------ccccCCCcccccCCCCCCCCCCeEEEEEeccCCCCCC
Q psy15467 3 SMGKKLRRDTIDQERPLRSLPVPAQLVES--------------PLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSSRLEP 68 (241)
Q Consensus 3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~--------------~~l~~g~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~ 68 (241)
+||||||||+||+++|.+||.++..|+.. ++++.|.++.++. .|++||||++++++.+++.+.
T Consensus 94 ~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g---~Dk~GrpVii~r~g~~d~~~~ 170 (316)
T 3hx3_A 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSS---RDKYGRVVMLFNIENWQSQEI 170 (316)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSS---CCTTSCEEEEEECTTCCTTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCC---CCCCCCEEEEEecccCCCCCC
Confidence 68999999999999999999887777542 2356677766553 579999999999999887776
Q ss_pred chhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc----ccCHHHHHHHHHHHHhhhhhhcceEEEEeCChH
Q psy15467 69 NVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQ 144 (241)
Q Consensus 69 ~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~----~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~ 144 (241)
+....+ ...++++|.++.+++.+++|+++|+|++|+|+ +++++.+|+++.++|++||+|++++||||+|++
T Consensus 171 ~~~~~~-----r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~ 245 (316)
T 3hx3_A 171 TFDEIL-----QAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWY 245 (316)
T ss_dssp CHHHHH-----HHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTT
T ss_pred CHHHHH-----HHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHH
Confidence 544332 23455678888777778999999999999997 378999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcChhhcCceEEeCCChHHHhccCCCCCCCcccCCCccccchhhHHHHh
Q psy15467 145 VDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLY 203 (241)
Q Consensus 145 ~~~~~~lik~fl~~k~~~ki~~~~~~~~~L~~~i~~~~LP~eyGG~~~~~~~~~~~~~~ 203 (241)
|+++|+++||||+++|++||+|||+++++|.++||+++||++|||++-...++.|.+.+
T Consensus 246 f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~LP~eyGG~~~~~d~~~~~~~l 304 (316)
T 3hx3_A 246 FTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDFGGTLPKYDGKAVAEQL 304 (316)
T ss_dssp HHHHHHHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGSBGGGTSSBCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhCcHhhCCCCCCcChhHHHHHH
Confidence 99999999999999999999999878899999999999999999987766677777665
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.1e-37 Score=272.76 Aligned_cols=189 Identities=18% Similarity=0.164 Sum_probs=143.1
Q ss_pred ccchhhhcCCCChhhHhhcCcCccccccc----ccccCC---------CcccccCCCCCCCCCCeEEEEEeccCCCCCCc
Q psy15467 3 SMGKKLRRDTIDQERPLRSLPVPAQLVES----PLLSGG---------HLQVSPTPDGLTPGGHQNPILRLCVSSRLEPN 69 (241)
Q Consensus 3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~----~~l~~g---------~~~~l~~~~~~d~~G~~vii~r~~~~~~~~~~ 69 (241)
+||||||||+||+++|.+||.++++|+.+ ++++.. ..++... .|.|++||+|++++++..++....
T Consensus 54 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~g~Dk~GrpV~i~~~g~~d~~~~~ 132 (296)
T 1aua_A 54 TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYY-HKTDKDGRPVYFEELGAVNLHEMN 132 (296)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEE-EEECTTSCEEEEECGGGCCHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCcee-cccCCCCCEEEEEeeccCChHHhh
Confidence 68999999999999999999988888753 222110 1111111 247899999999999987643210
Q ss_pred hhhhccchhhhHHHHHhhhhhhc--------cCCccccEEEEEeCCCCcc-ccC--HHHHHHHHHHHHhhhhhhcceEEE
Q psy15467 70 VDLRQSDATSDHDIRTSGLLLVD--------TKIQYSGFVFLLDWNQTSI-YAS--PTLLRTMISGLQDCYPARFKAIHF 138 (241)
Q Consensus 70 ~~~~~~~~~~~~~i~~~E~l~~~--------~~~~~~g~v~I~D~~g~s~-~~~--~~~~k~~~~~~q~~yP~rl~~i~i 138 (241)
...... -.+...++.+|.+++. ...+++|+++|+|++|+|+ +++ ++.+|.++.++|++||+|++++||
T Consensus 133 ~~~~~~-~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~i 211 (296)
T 1aua_A 133 KVTSEE-RMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYI 211 (296)
T ss_dssp TTCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred ccCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEE
Confidence 000000 0122234455654432 1235789999999999997 444 678999999999999999999999
Q ss_pred EeCChHHHHHHHHHhhhcChhhcCceEEeCCCh-HHHhccCCCCCCCcccCCCccc
Q psy15467 139 INEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIEIFNGSII 193 (241)
Q Consensus 139 vN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~-~~L~~~i~~~~LP~eyGG~~~~ 193 (241)
||+|++|+++|+++||||+++|++||+||++++ ++|.++||+++||++|||++..
T Consensus 212 iN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~ 267 (296)
T 1aua_A 212 INAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVKFGGKSEV 267 (296)
T ss_dssp ESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSSBGGGTSCBCC
T ss_pred ECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhCcHHhCCCCCC
Confidence 999999999999999999999999999997654 6899999999999999997543
No 4
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=8.7e-37 Score=277.78 Aligned_cols=186 Identities=18% Similarity=0.208 Sum_probs=146.7
Q ss_pred ccchhhhcCCCChhhHhhcCcCccccccc----ccccCCC------cccccCCCCCCCCCCeEEEEEeccCCCCC----C
Q psy15467 3 SMGKKLRRDTIDQERPLRSLPVPAQLVES----PLLSGGH------LQVSPTPDGLTPGGHQNPILRLCVSSRLE----P 68 (241)
Q Consensus 3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~----~~l~~g~------~~~l~~~~~~d~~G~~vii~r~~~~~~~~----~ 68 (241)
.||||||||+||+++|.+||+++++|+++ ++++... .+.... .|.|++||||++++++..++.. .
T Consensus 37 ~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~-~g~Dk~GrpV~~~~~g~~d~~~l~~~~ 115 (403)
T 1olm_A 37 FLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVIQQYLSGGM-CGYDLDGCPVWYDIIGPLDAKGLLFSA 115 (403)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHHHHHHCCBEE-EEECTTSCEEEEEECTTCCHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHhCCcee-eccCCCcCEEEEEecCCCChHHhhccC
Confidence 58999999999999999999998888763 3332100 001111 2478999999999999876542 2
Q ss_pred chhhhccchhhhHHHHHhhhhhhccCC-------ccccEEEEEeCCCCcc-cc---CHHHHHHHHHHHHhhhhhhcceEE
Q psy15467 69 NVDLRQSDATSDHDIRTSGLLLVDTKI-------QYSGFVFLLDWNQTSI-YA---SPTLLRTMISGLQDCYPARFKAIH 137 (241)
Q Consensus 69 ~~~~~~~~~~~~~~i~~~E~l~~~~~~-------~~~g~v~I~D~~g~s~-~~---~~~~~k~~~~~~q~~yP~rl~~i~ 137 (241)
+... .+.+.++++|.++..... +++|+++|+|++|+++ ++ .++.+|.++.++|++||+|++++|
T Consensus 116 ~~~~-----~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~ 190 (403)
T 1olm_A 116 SKQD-----LLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLF 190 (403)
T ss_dssp CHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CHHH-----HHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEE
Confidence 2222 223345566776654332 4789999999999997 34 456789999999999999999999
Q ss_pred EEeCChHHHHHHHHHhhhcChhhcCceEEeCCCh-HHHhccCCCCCCCcccCCCcccc
Q psy15467 138 FINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIEIFNGSIIV 194 (241)
Q Consensus 138 ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~-~~L~~~i~~~~LP~eyGG~~~~~ 194 (241)
|||+|++|.++|+++||||+++|++||+||++++ ++|.++||+++||++|||++...
T Consensus 191 iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~LP~~yGG~~~~~ 248 (403)
T 1olm_A 191 VVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVEYGGTMTDP 248 (403)
T ss_dssp EESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSBGGGTSSBCCT
T ss_pred EEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhCchhhCCCcCCC
Confidence 9999999999999999999999999999997665 58999999999999999976544
No 5
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=2.7e-36 Score=267.05 Aligned_cols=187 Identities=17% Similarity=0.204 Sum_probs=141.5
Q ss_pred ccchhhhcCCCChhhHhhcCcCccccccc----ccc-----------------cCCCcccccCCCCCCCCCCeEEEEEec
Q psy15467 3 SMGKKLRRDTIDQERPLRSLPVPAQLVES----PLL-----------------SGGHLQVSPTPDGLTPGGHQNPILRLC 61 (241)
Q Consensus 3 ~llRFLrArkfdv~kA~~~L~~~~~~~~~----~~l-----------------~~g~~~~l~~~~~~d~~G~~vii~r~~ 61 (241)
+||||||||+||+++|.+||+++++|+++ +++ .......+ .|.|++||||+++|++
T Consensus 63 ~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~---~g~Dk~GRpV~i~r~g 139 (320)
T 3q8g_A 63 TLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYY---HHVDKDGRPLYFAELG 139 (320)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEE---EEECTTCCEEEEEECT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCcee---cCCCCCcCEEEEEecc
Confidence 68999999999999999999988888753 121 11111111 2468999999999999
Q ss_pred cCCCCCCchhhhccchhhhHHHHHhhhhhhc--------cCCccccEEEEEeCCCCcc-ccC--HHHHHHHHHHHHhhhh
Q psy15467 62 VSSRLEPNVDLRQSDATSDHDIRTSGLLLVD--------TKIQYSGFVFLLDWNQTSI-YAS--PTLLRTMISGLQDCYP 130 (241)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~--------~~~~~~g~v~I~D~~g~s~-~~~--~~~~k~~~~~~q~~yP 130 (241)
..++.+........ -.+...++.+|.+++. ....++++++|+|++|+|+ ++. ++.+|.++.++|++||
T Consensus 140 ~~d~~~l~~~~~~~-~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YP 218 (320)
T 3q8g_A 140 GINLKKMYKITTEK-QMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYP 218 (320)
T ss_dssp TCCHHHHHHHCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHST
T ss_pred ccCHHHhhccCCHH-HHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 86654320000000 0122334455655432 1113567899999999997 333 6789999999999999
Q ss_pred hhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCCh-HHHhccCCCCCCCcccCCCccc
Q psy15467 131 ARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL-DSLYGYLPRDILPIEIFNGSII 193 (241)
Q Consensus 131 ~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~-~~L~~~i~~~~LP~eyGG~~~~ 193 (241)
+|++++||||+|++|+++|+++||||+++|++||+|++++. ++|.++||+++||++|||++..
T Consensus 219 erl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~ 282 (320)
T 3q8g_A 219 ERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENLPVKYGGTSVL 282 (320)
T ss_dssp TCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGSBGGGTSCBCC
T ss_pred hhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhCChhhCCCCCC
Confidence 99999999999999999999999999999999999998664 7999999999999999997543
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.07 E-value=5.1e-10 Score=95.51 Aligned_cols=125 Identities=11% Similarity=-0.020 Sum_probs=95.4
Q ss_pred CCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc--ccCHHHHHHHHHHH
Q psy15467 48 LTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI--YASPTLLRTMISGL 125 (241)
Q Consensus 48 ~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~--~~~~~~~k~~~~~~ 125 (241)
.|++|+||+++.++.......+.+. .+.+.+.+++.+ -.+.+.+|+|++|++. ..+...++++..++
T Consensus 18 ~d~dGrpViv~~~~~l~~~~~D~e~-----Ll~~vl~tl~~~------~~~~y~lV~d~T~~~~~n~p~~~wl~~~~~ll 86 (256)
T 3pg7_A 18 TSKAGNPIFYYVARRFKTGQINGDL-----LIYHVLLTLKPY------YAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVF 86 (256)
T ss_dssp ECTTSCEEEEEEGGGCCBTTBCHHH-----HHHHHHHHHTTT------TTSCEEEEEECTTCCGGGCCCHHHHHHTTTSS
T ss_pred cCCCCCEEEEEEeecCCCCCCCHHH-----HHHHHHHHHHHh------cCCCeEEEEECCCCCcccCCcHHHHHHHHHHc
Confidence 5689999999999987654433111 111222222222 2367999999999996 35667899999999
Q ss_pred HhhhhhhcceEEEEeCChHHHHHHHH-HhhhcChhhcCceEEeCCChHHHhccCCCCCCC
Q psy15467 126 QDCYPARFKAIHFINEPVQVDVLLAL-VKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILP 184 (241)
Q Consensus 126 q~~yP~rl~~i~ivN~P~~~~~~~~l-ik~fl~~k~~~ki~~~~~~~~~L~~~i~~~~LP 184 (241)
...|...++++|++|+++++...+.. .++|.+.+..+|++++ ++.++|.++|+.++|.
T Consensus 87 p~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv-~sl~eL~~~i~~~~L~ 145 (256)
T 3pg7_A 87 PGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFI-DCPGKLAEHIEHEQQK 145 (256)
T ss_dssp CHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEE-SSTTGGGGTSCGGGCC
T ss_pred CHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEE-CCHHHHHhhcCHHHcC
Confidence 99999999999999999999977665 5667777888999999 4789999999877663
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.85 E-value=4.9e-09 Score=90.91 Aligned_cols=124 Identities=11% Similarity=-0.030 Sum_probs=87.1
Q ss_pred CCCCCCeEEEEEeccCCCCCCchhhhccchhhhHHHHHhhhhhhccCCccccEEEEEeCCCCcc--ccCHHHHHHHHHHH
Q psy15467 48 LTPGGHQNPILRLCVSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI--YASPTLLRTMISGL 125 (241)
Q Consensus 48 ~d~~G~~vii~r~~~~~~~~~~~~~~~~~~~~~~~i~~~E~l~~~~~~~~~g~v~I~D~~g~s~--~~~~~~~k~~~~~~ 125 (241)
.|++|+||+++.+++.+....+.+. .+.+.+.+++.+ -...+.+|+|++|++. ..+...++.+..++
T Consensus 37 ~d~dG~PViv~~~~~~~~~~~D~e~-----Lly~il~tl~~~------~~~~y~lV~D~T~~~~~n~p~~~~l~~~~~ll 105 (290)
T 3peg_A 37 TSKAGNPIFYYVARRFKTGQINGDL-----LIYHVLLTLKPY------YAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVF 105 (290)
T ss_dssp ECTTSCEEEEEEGGGCCBTTBCHHH-----HHHHHHHHHTTT------TTSCEEEEEECTTCCGGGCCCHHHHGGGGTSS
T ss_pred cCCCCCEEEEEEeecCCccCCCHHH-----HHHHHHHHHHHh------cCCCeEEEEEcCCCCccCCChHHHHHHHHHHC
Confidence 4689999999999987654443211 112222222222 1367999999999997 36677899999999
Q ss_pred HhhhhhhcceEEEEeCChHHHHHH-HHHhhhcChhhcCceEEeCCChHHHhccCCCCCC
Q psy15467 126 QDCYPARFKAIHFINEPVQVDVLL-ALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDIL 183 (241)
Q Consensus 126 q~~yP~rl~~i~ivN~P~~~~~~~-~lik~fl~~k~~~ki~~~~~~~~~L~~~i~~~~L 183 (241)
...|+..++++|++|++.+|...+ ...++|.+.+..+|+.++. ++..|.++++.+++
T Consensus 106 p~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~-~~~~L~~~i~~~~~ 163 (290)
T 3peg_A 106 PGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID-CPGKLAEHIEHEQQ 163 (290)
T ss_dssp CHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEES-SSCC----------
T ss_pred CHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcC-CHHHHHhhCCHHHh
Confidence 999999999999999999988865 4678888889999999984 66679999987644
No 8
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=49.54 E-value=18 Score=28.60 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHh-----hhcChhhcCceEEeCCChHHHhccCC
Q psy15467 115 PTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVK-----PFLKEKTRDKIIVHGQNLDSLYGYLP 179 (241)
Q Consensus 115 ~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik-----~fl~~k~~~ki~~~~~~~~~L~~~i~ 179 (241)
...+-.++...|-..- -+-|.++|..-+.+.++.+++ .|++++-.+.+++. ++.+++.+++.
T Consensus 122 LdElfe~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~-d~~ee~~~~l~ 188 (189)
T 3sbx_A 122 LDELLDVWTEGYLGMH--DKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVV-DNLDDALQACA 188 (189)
T ss_dssp HHHHHHHHHHHHTTSC--CCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEE-SSHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccc--CCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEe-CCHHHHHHHhc
Confidence 3445555555565542 368999999777777776653 58999999999999 58888877654
No 9
>2k44_A Hsapbk, K+-channel voltage-sensor paddle domain of calcium-activated potassium channel subunit...; membrane, micelle, solution structure; NMR {Synthetic}
Probab=49.21 E-value=3.6 Score=22.01 Aligned_cols=6 Identities=33% Similarity=0.174 Sum_probs=4.7
Q ss_pred chhhhc
Q psy15467 5 GKKLRR 10 (241)
Q Consensus 5 lRFLrA 10 (241)
||||||
T Consensus 15 LRFLRA 20 (28)
T 2k44_A 15 LRFLRA 20 (28)
T ss_dssp STTCTT
T ss_pred HHHHHH
Confidence 788884
No 10
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=46.70 E-value=21 Score=28.47 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHh-----hhcChhhcCceEEeCCChHHHhccCCC
Q psy15467 114 SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVK-----PFLKEKTRDKIIVHGQNLDSLYGYLPR 180 (241)
Q Consensus 114 ~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik-----~fl~~k~~~ki~~~~~~~~~L~~~i~~ 180 (241)
|...+-.++...|-.+. -+-|.++|..-+.+.++.++. .|++++-.+.+++. ++++++.+.+.+
T Consensus 130 TldEl~e~lt~~qlg~~--~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~-d~~~e~~~~l~~ 198 (199)
T 3qua_A 130 TLEEFFEAWTAGYLGMH--DKPLILLDPFGHYDGLLTWLRGLVPTGYVSQRAMDSLVVV-DNVEAALEACAP 198 (199)
T ss_dssp HHHHHHHHHHHHHTTSC--CCCEEEECTTSTTHHHHHHHHHTTTTTSSCHHHHHTSEEE-SSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccC--CCCEEEEcCCccchHHHHHHHHHHHCCCCCHHHCCeEEEe-CCHHHHHHHHhc
Confidence 34455566666666553 367999999778888888765 47888888999999 588888776643
No 11
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=45.63 E-value=82 Score=22.65 Aligned_cols=58 Identities=14% Similarity=0.021 Sum_probs=39.5
Q ss_pred EEEEEeCCCCccccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChh
Q psy15467 100 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEK 159 (241)
Q Consensus 100 ~v~I~D~~g~s~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k 159 (241)
+.+++|++++. -+++..+-.-+.+--.+ -..+.++-||-.+.+...+.+++.+|++.+
T Consensus 54 i~ll~~~~~f~-G~~~~a~~~d~k~~~~h-~~~~~RiAvV~d~~W~~~~~~~~~~~~~~e 111 (126)
T 2q3l_A 54 IVALIDITELD-GLSLHAAWDDLKLGLKH-GKEFKRVAIIGQGELQEWATRVANWFTPGE 111 (126)
T ss_dssp EEEEEEEEEEE-EECHHHHHHHHHHHHHH-GGGEEEEEEECCSHHHHHHHHHHHHHCSSE
T ss_pred EEEEEEecCCC-CCCHHHHHHHHHhhhhH-HhcCCEEEEEcChHHHHHHHHHHhhccCCc
Confidence 66777765433 23444333223322233 477999999999999999999999998765
No 12
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=40.55 E-value=7.9 Score=22.86 Aligned_cols=19 Identities=21% Similarity=0.055 Sum_probs=15.9
Q ss_pred cchhhhcCCCChhhHhhcC
Q psy15467 4 MGKKLRRDTIDQERPLRSL 22 (241)
Q Consensus 4 llRFLrArkfdv~kA~~~L 22 (241)
...||.+.+||++.|+..+
T Consensus 23 A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 23 ARFFLESAGWDLQIALASF 41 (46)
T ss_dssp HHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 3579999999999998754
No 13
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=37.61 E-value=13 Score=22.29 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=15.9
Q ss_pred cchhhhcCCCChhhHhhcC
Q psy15467 4 MGKKLRRDTIDQERPLRSL 22 (241)
Q Consensus 4 llRFLrArkfdv~kA~~~L 22 (241)
...||-+.+||++.|+...
T Consensus 24 A~~~Lea~nWDLe~Av~~f 42 (45)
T 3e21_A 24 AITLLEQNNWDLVAAINGV 42 (45)
T ss_dssp HHHHHHHTTTCHHHHHTTC
T ss_pred HHHHHHHcCCcHHHHHHHH
Confidence 3569999999999998754
No 14
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=36.07 E-value=73 Score=23.85 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=30.0
Q ss_pred cccEEEEEeCCCCccccCHHHHHHHHHHHHhhhhhhcceEEEEeCC
Q psy15467 97 YSGFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEP 142 (241)
Q Consensus 97 ~~g~v~I~D~~g~s~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P 142 (241)
..|.++|.|+.. +|..++..+..+++.||. +++++|=.|
T Consensus 34 ~~g~~vi~DyaH-----nP~si~a~l~al~~~~~~--~riivvf~~ 72 (163)
T 3mvn_A 34 VNNITVYDDFAH-----HPTAITATIDALRAKVGQ--QRILAVLEP 72 (163)
T ss_dssp ETTEEEEEECCC-----SHHHHHHHHHHHHHHHTT--SCEEEEECC
T ss_pred CCCcEEEEcCCC-----CHHHHHHHHHHHHHhcCC--CcEEEEECC
Confidence 357889999655 899999999999988886 466666554
No 15
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=35.79 E-value=46 Score=26.70 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHH-----hhhcChhhcCceEEeCCChHHHhccCC
Q psy15467 114 SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV-----KPFLKEKTRDKIIVHGQNLDSLYGYLP 179 (241)
Q Consensus 114 ~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~li-----k~fl~~k~~~ki~~~~~~~~~L~~~i~ 179 (241)
|...+-.++...|-.+ .-+-|.++|..-+.+.++.++ ..|++++..+.+.+. ++++++.+.+-
T Consensus 122 TLdElfE~lt~~qlg~--~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~-d~~ee~~~~l~ 189 (215)
T 2a33_A 122 TLEELLEVITWAQLGI--HDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSA-PTAKELVKKLE 189 (215)
T ss_dssp HHHHHHHHHHHHHTTS--CCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEE-SSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCC--CCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEe-CCHHHHHHHHH
Confidence 3444555566666553 356799999976667777765 568899999999998 58877666553
No 16
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=35.46 E-value=17 Score=30.74 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=27.0
Q ss_pred hhhhcceEEEEeCChHHHHHHHHHhhhcChhhc
Q psy15467 129 YPARFKAIHFINEPVQVDVLLALVKPFLKEKTR 161 (241)
Q Consensus 129 yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~ 161 (241)
..+.=.+++|||+||-+.....-+.|+|.+.+.
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~l~ 265 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTYFN 265 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHHSS
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHHhC
Confidence 455567899999999999999988888876554
No 17
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.76 E-value=13 Score=23.85 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=16.2
Q ss_pred cchhhhcCCCChhhHhhcC
Q psy15467 4 MGKKLRRDTIDQERPLRSL 22 (241)
Q Consensus 4 llRFLrArkfdv~kA~~~L 22 (241)
...||.+.+||++.|+..+
T Consensus 33 A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 33 GKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp HHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 3579999999999999865
No 18
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=33.33 E-value=12 Score=21.18 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=13.7
Q ss_pred chhhhcCCCChhhHhhcC
Q psy15467 5 GKKLRRDTIDQERPLRSL 22 (241)
Q Consensus 5 lRFLrArkfdv~kA~~~L 22 (241)
.+-|++.++|++.|.+.|
T Consensus 22 ~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 22 AQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 567888888888887643
No 19
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=30.71 E-value=1.2e+02 Score=20.22 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=34.5
Q ss_pred EEEEeCCCCccccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHH
Q psy15467 101 VFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 152 (241)
Q Consensus 101 v~I~D~~g~s~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~li 152 (241)
.+|+|+++++. ++.+.+..+..+.+.+ ..+=..+.++|++.-+..++.+.
T Consensus 46 ~vvlDls~v~~-iDssgl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 46 KIVLDLSSVSY-MDSAGLGTLVVILKDA-KINGKEFILSSLKESISRILKLT 95 (110)
T ss_dssp EEEEECTTCCC-BCHHHHHHHHHHHHHH-HHTTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcE-EccHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHh
Confidence 57999999984 4655555555544433 33456789999998877777664
No 20
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=30.12 E-value=1.2e+02 Score=21.04 Aligned_cols=66 Identities=6% Similarity=0.040 Sum_probs=42.0
Q ss_pred cEEEEEeCCCCccccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCChH
Q psy15467 99 GFVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLD 172 (241)
Q Consensus 99 g~v~I~D~~g~s~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~~ 172 (241)
.-.+|+|+++++. ++.+.+..++.+.+.+-..+=..+.++|++.-+.-++.+.. +.+.+.++. +.+
T Consensus 48 ~~~vvlDls~v~~-iDSsGl~~L~~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~g------l~~~~~i~~-~~~ 113 (121)
T 3t6o_A 48 PRKVLIDLEGVEF-FGSSFIELLVRGWKRIKEDQQGVFALCSVSPYCVEVLQVTH------IDEVWPRYS-TKQ 113 (121)
T ss_dssp SCEEEEECTTCCE-ECHHHHHHHHHHHHHHTTSTTCEEEEESCCHHHHHHHTTCS------GGGGSCEES-SHH
T ss_pred CCeEEEECCCCCE-EcHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHhC------ccceecccC-CHH
Confidence 4579999999984 45555555555554432215578999999988877776542 223445663 554
No 21
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.94 E-value=16 Score=22.11 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=14.2
Q ss_pred cchhhhcCCCChhhHhhcC
Q psy15467 4 MGKKLRRDTIDQERPLRSL 22 (241)
Q Consensus 4 llRFLrArkfdv~kA~~~L 22 (241)
..+=|++..+|+++|.+.|
T Consensus 25 a~~AL~~~~~n~e~A~e~L 43 (49)
T 1ify_A 25 VVAALRASYNNPHRAVEYL 43 (49)
T ss_dssp HHHHHHTTTSCSHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 3456888888888888755
No 22
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.57 E-value=17 Score=23.56 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=16.0
Q ss_pred chhhhcCCCChhhHhhcC
Q psy15467 5 GKKLRRDTIDQERPLRSL 22 (241)
Q Consensus 5 lRFLrArkfdv~kA~~~L 22 (241)
..||.+.+||++.|+..+
T Consensus 36 ~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 36 KQLLQAAHWQFETALSTF 53 (66)
T ss_dssp HHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 469999999999999866
No 23
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=26.51 E-value=1.7e+02 Score=20.52 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=42.4
Q ss_pred EEEEEeCCCCccccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCChHHH
Q psy15467 100 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDSL 174 (241)
Q Consensus 100 ~v~I~D~~g~s~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~~~L 174 (241)
-.+|+|+++++. ++.+.+..++.+.+.+ -.+=..+.++|++.-+.-++.+.. +.+.+.++. +.++.
T Consensus 53 ~~vvlDls~V~~-iDSsGl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~~g------l~~~~~i~~-s~~~A 118 (125)
T 2ka5_A 53 NKIFLVLSDVES-IDSFSLGVIVNILKSI-SSSGGFFALVSPNEKVERVLSLTN------LDRIVKIYD-TISEA 118 (125)
T ss_dssp CEEEEECTTCSC-CCHHHHHHHHHHHHHH-HHHTCEEEEECCCHHHHHHHHHTT------STTTSEEES-SHHHH
T ss_pred CEEEEECCCCCE-EcHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHcC------CCceEEecC-CHHHH
Confidence 468999999984 4555555555444443 334578999999998888887653 223356663 55543
No 24
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=24.91 E-value=1.4e+02 Score=20.47 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=42.9
Q ss_pred EEEEeCCCCccccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCChHH
Q psy15467 101 VFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDS 173 (241)
Q Consensus 101 v~I~D~~g~s~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~~~ 173 (241)
.+|+|+++++. ++.+.+..++.+.+.+ -.+=..+.++|++.-+.-++.+.. +-+.+.++. +.++
T Consensus 44 ~vvlDls~v~~-iDssgl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~~g------l~~~~~i~~-~~~~ 107 (117)
T 4hyl_A 44 KMILDLREVSY-MSSAGLRVLLSLYRHT-SNQQGALVLVGVSEEIRDTMEITG------FWNFFTACA-SMDE 107 (117)
T ss_dssp EEEEEEEEEEE-ECHHHHHHHHHHHHHH-HHTTCEEEEECCCHHHHHHHHHHT------CGGGCEEES-CHHH
T ss_pred eEEEECCCCcE-EcHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHHHHhC------ccceeeecC-CHHH
Confidence 89999999984 4555555555544433 234568999999998888887764 233456774 5543
No 25
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=24.51 E-value=1.8e+02 Score=20.23 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=36.9
Q ss_pred EEEEEeCCCCccccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHH
Q psy15467 100 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 152 (241)
Q Consensus 100 ~v~I~D~~g~s~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~li 152 (241)
-.+|+|+++++. ++.+.+..+..+.+.+- . =..++++|.+.-+.-++...
T Consensus 47 ~~vilDl~~v~~-iDssgl~~L~~~~~~~~-~-g~~l~l~~~~~~v~~~l~~~ 96 (118)
T 3ny7_A 47 RIVILKWDAVPV-LDAGGLDAFQRFVKRLP-E-GCELRVCNVEFQPLRTMARA 96 (118)
T ss_dssp SEEEEEEEECCC-BCHHHHHHHHHHHHHCC-T-TCEEEEECCCHHHHHHHHHT
T ss_pred cEEEEEcCCCCe-ecHHHHHHHHHHHHHHH-C-CCEEEEecCCHHHHHHHHHc
Confidence 469999999984 57776666666665543 4 57899999988777776654
No 26
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.47 E-value=17 Score=23.63 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=16.5
Q ss_pred cchhhhcCCCChhhHhhcC
Q psy15467 4 MGKKLRRDTIDQERPLRSL 22 (241)
Q Consensus 4 llRFLrArkfdv~kA~~~L 22 (241)
...||.+.+||++.|+..+
T Consensus 37 A~~~Le~~~WnLe~Av~~f 55 (67)
T 2dam_A 37 CRHTLEQHNWNIEAAVQDR 55 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 4579999999999999865
No 27
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=22.30 E-value=1.1e+02 Score=24.43 Aligned_cols=62 Identities=23% Similarity=0.212 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHH-----hhhcChhhcCceEEeCCChHHHhccC
Q psy15467 114 SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV-----KPFLKEKTRDKIIVHGQNLDSLYGYL 178 (241)
Q Consensus 114 ~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~li-----k~fl~~k~~~ki~~~~~~~~~L~~~i 178 (241)
|...+-.++...|-.. .-+-|.++|..-+.+.++.++ ..|+++...+.+.+. ++.+++.+.+
T Consensus 118 TLdElfE~lt~~qlg~--~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~-d~~ee~~~~l 184 (216)
T 1ydh_A 118 TMEELLEMITWSQLGI--HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSA-PTAKELMEKM 184 (216)
T ss_dssp HHHHHHHHHHHHHHTS--CCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEE-SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--cCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEe-CCHHHHHHHH
Confidence 3344555555556543 346799999877777777754 458899999999999 5887766554
No 28
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=21.68 E-value=2.1e+02 Score=20.02 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=32.2
Q ss_pred EEEEEeCCCCcc--ccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHH
Q psy15467 100 FVFLLDWNQTSI--YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 152 (241)
Q Consensus 100 ~v~I~D~~g~s~--~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~li 152 (241)
-.+|+||++++. .-....+..+.+.++. +=..+.++|++.-+.-++...
T Consensus 49 ~~vvlDls~v~~iDssgl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 99 (130)
T 2kln_A 49 EWFVLNAESNVEVDLTALDALDQLRTELLR----RGIVFAMARVKQDLRESLRAA 99 (130)
T ss_dssp EEEEEECSCCSSSBCSTTTHHHHHHHHHHT----TTEEEEEECCSSHHHHHHHHC
T ss_pred eEEEEECCCCChhhHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHHHHHHHc
Confidence 579999999995 2333445444444433 446788999988776666653
No 29
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=21.08 E-value=2e+02 Score=19.34 Aligned_cols=65 Identities=11% Similarity=0.031 Sum_probs=41.9
Q ss_pred EEEEEeCCCCccccCHHHHHHHHHHHHhhhhhhcceEEEEeCChHHHHHHHHHhhhcChhhcCceEEeCCChHH
Q psy15467 100 FVFLLDWNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNLDS 173 (241)
Q Consensus 100 ~v~I~D~~g~s~~~~~~~~k~~~~~~q~~yP~rl~~i~ivN~P~~~~~~~~lik~fl~~k~~~ki~~~~~~~~~ 173 (241)
-.+|+|+++++. ++.+.+..+..+.+.+ -.+=..+.++|.+.-+.-++.+.. +.+.+.++. +.++
T Consensus 44 ~~vvlDls~v~~-iDssgl~~L~~~~~~~-~~~g~~l~l~~~~~~v~~~l~~~g------l~~~~~i~~-~~~~ 108 (116)
T 1th8_B 44 RHIVLNLGQLTF-MDSSGLGVILGRYKQI-KNVGGQMVVCAVSPAVKRLFDMSG------LFKIIRVEA-DEQF 108 (116)
T ss_dssp CEEEEEEEEEEE-ECHHHHHHHHHHHHHH-HHTTCCEEEESCCHHHHHHHHHHT------GGGTSEEES-SHHH
T ss_pred cEEEEECCCCcE-EccHHHHHHHHHHHHH-HHhCCeEEEEeCCHHHHHHHHHhC------CceeEEEeC-CHHH
Confidence 357999999984 4555555555544433 334467899999988888887753 233457774 5543
No 30
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.37 E-value=23 Score=21.15 Aligned_cols=19 Identities=32% Similarity=0.211 Sum_probs=15.9
Q ss_pred cchhhhcCCCChhhHhhcC
Q psy15467 4 MGKKLRRDTIDQERPLRSL 22 (241)
Q Consensus 4 llRFLrArkfdv~kA~~~L 22 (241)
.++=|++..+|+++|.+.|
T Consensus 25 ~~~AL~~~~gnv~~Ave~L 43 (46)
T 2bwb_A 25 NVAALRRSGGSVQGALDSL 43 (46)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4677999999999998865
Done!