RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15467
(241 letters)
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain. Found in
secretory proteins, such as S. cerevisiae
phosphatidylinositol transfer protein (Sec14p), and in
lipid regulated proteins such as RhoGAPs, RhoGEFs and
neurofibromin (NF1). SEC14 domain of Dbl is known to
associate with G protein beta/gamma subunits.
Length = 157
Score = 94.4 bits (235), Expect = 2e-24
Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 96 QYSGFVFLLDWNQTS---IYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 152
Q GFV ++D S + P+LL+ ++ LQD YP R KA++ IN P VL +V
Sbjct: 60 QVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIV 119
Query: 153 KPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIE 186
KPFL EKTR KI+ G + + L Y+ ++ LP E
Sbjct: 120 KPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEE 153
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain.
Length = 152
Score = 78.1 bits (193), Expect = 4e-18
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 99 GFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKP 154
G ++D S+ + L+ ++ LQD YP R I +N P +V+ L+KP
Sbjct: 56 GITVIIDMKGLSLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKP 115
Query: 155 FLKEKTRDKIIVH-GQNLDSLYGYLPRDILPIEIFNGS 191
FL KTR+KI H NL+ L Y+P + LP E + G+
Sbjct: 116 FLDPKTREKIHFHKNSNLEELLKYIPPEQLPKE-YGGT 152
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S. cerevisiae
phosphatidylinositol transfer protein (Sec14p). Domain
in homologues of a S. cerevisiae phosphatidylinositol
transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and
the RasGAP, neurofibromin (NF1). Lipid-binding domain.
The SEC14 domain of Dbl is known to associate with G
protein beta/gamma subunits.
Length = 158
Score = 72.3 bits (178), Expect = 6e-16
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 98 SGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKP 154
GF + D + ++ S +LR ++ LQD YP R ++ IN P VL ++KP
Sbjct: 62 EGFTVIFDLKGLSMSNPDLS--VLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKP 119
Query: 155 FLKEKTRDKIIVHGQN-LDSLYGYLPRDILPIE 186
FL EKTR+KI G + + L Y+ ++ LP E
Sbjct: 120 FLDEKTREKIRFVGNDSKEELLEYIDKEQLPEE 152
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain. This family
includes divergent members of the CRAL-TRIO domain
family. This family includes ECM25 that contains a
divergent CRAL-TRIO domain identified by Gallego and
colleagues.
Length = 149
Score = 44.6 bits (106), Expect = 6e-06
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 88 LLLVDTKIQYSGFVFLLD-----WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEP 142
L ++ +++ GFV ++D N+ S + L+ + L +P KA++ ++
Sbjct: 39 LSILSEELKPKGFVVVIDHTGVTRNKPSW----SWLKKLYKLLPRAFPKNLKAVYIVHPS 94
Query: 143 VQVDVLLA-LVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEI 187
+ L L + F +K K +++ +L L Y+ LP+E+
Sbjct: 95 TFLKKFLKTLGRLFSSKKLFKKKVIYVSSLSELSEYIDPTQLPLEL 140
>gnl|CDD|176567 cd08630, PI-PLCc_delta3, Catalytic domain of metazoan
phosphoinositide-specific phospholipase C-delta3. This
subfamily corresponds to the catalytic domain present in
metazoan phosphoinositide-specific phospholipase C
(PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a
signaling enzyme that hydrolyzes the membrane
phospholipids phosphatidylinositol-4,5-bisphosphate
(PIP2) to generate two important second messengers in
eukaryotic signal transduction cascades, Inositol
1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG).
InsP3 triggers inflow of calcium from intracellular
stores, while DAG, together with calcium, activates
protein kinase C, which then phosphorylates other
molecules, leading to altered cellular activity. Calcium
is required for the catalysis. PLC-delta represents a
class of mammalian PI-PLC that has an N-terminal
pleckstrin homology (PH) domain, an array of EF hands, a
PLC catalytic core domain, and a C-terminal C2 domain.
This family corresponds to the catalytic domain which is
a TIM barrel with two highly conserved regions (X and Y)
split by a highly degenerate linker sequence. There are
three PI-PLC-delta isozymes (1,3 and 4). Unlike
PI-PLC-delta 4, PI-PLC-delta1 and 3 possess a putative
nuclear export sequence (NES) located in the EF-hand
domain, which may be responsible transporting
PI-PLC-delta1 and 3 from the cell nucleus.
Length = 258
Score = 29.6 bits (66), Expect = 1.2
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 2 SSMGKKLRRDTIDQERPLRSLPVPAQLVESPLLSGGHLQVSPTPDGLTPGGHQNPILRL- 60
+ +G L +D LP P +L L+ G LQ+SP L + L
Sbjct: 113 TILGDMLVTQPLD-SLNPEELPSPEELKGRVLVKGKKLQISPELSALAVYCQATRLRTLE 171
Query: 61 CVSSRLEPNVDLRQSDATSDHDIRTSGLLLV 91
+ +P S+ + IR +G V
Sbjct: 172 PAPVQPQPCQVSSLSERKAKKLIREAGNSFV 202
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 173 SLYGYLPRDILPIEIFNGSIIVHGQNLDSL 202
+L G LP G +I+ G++L L
Sbjct: 54 ALMGLLPEGGRITS---GEVILDGRDLLGL 80
>gnl|CDD|222846 PHA02047, PHA02047, phage lambda Rz1-like protein.
Length = 101
Score = 26.9 bits (59), Expect = 3.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 10 RDTIDQERPLRSLPVPAQLVES 31
+DQ RP PVP +V+S
Sbjct: 72 DRALDQNRPWADRPVPPAVVDS 93
>gnl|CDD|184228 PRK13671, PRK13671, hypothetical protein; Provisional.
Length = 298
Score = 27.4 bits (61), Expect = 7.2
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 111 IYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKI 164
YAS T LR MI +D +++ + F P ++ L + ++ +++K+
Sbjct: 194 NYASATYLRKMIFENKDI--SKYSPMKFKKPPKSIENLYKEFQKIVRNTSKEKL 245
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 27.4 bits (61), Expect = 8.1
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 1 MSSMGKKLRRDTIDQERPLRSLPVPAQLVESPLLSGGHLQVSPTPDGLTPGGHQ 54
S + + LR +Q RP + P P+ +VE +G T GGH+
Sbjct: 595 TSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHE 648
>gnl|CDD|180667 PRK06718, PRK06718, precorrin-2 dehydrogenase; Reviewed.
Length = 202
Score = 26.9 bits (60), Expect = 8.9
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 113 ASPTLLRTMISGLQDCYPARFKA-IHFINEPVQVDVLLALVKPFLKEKTRDKIIVHGQNL 171
ASP L + + L+ Y +++ I F+ E Q +K EK R+K I+ + L
Sbjct: 128 ASPKLAKKIRDELEALYDESYESYIDFLYECRQ------KIKELQIEK-REKQILLQEVL 180
Query: 172 DSLY 175
S Y
Sbjct: 181 SSEY 184
>gnl|CDD|237293 PRK13185, chlL, protochlorophyllide reductase iron-sulfur
ATP-binding protein; Provisional.
Length = 270
Score = 26.8 bits (60), Expect = 9.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 192 IIVHGQNLDSLYGANRPSWPCYEKNAGYRVK 222
+IV + DS++ ANR + K Y+V+
Sbjct: 145 LIVTANDFDSIFAANRIAAAIQAKAKNYKVR 175
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.412
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,234,982
Number of extensions: 1149283
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 14
Length of query: 241
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 147
Effective length of database: 6,768,326
Effective search space: 994943922
Effective search space used: 994943922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)