RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15467
(241 letters)
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein,
11-CIS-retinal, bothnia dystrophy, acetylation,
cytoplasm, disease mutation; HET: RET; 1.69A {Homo
sapiens} PDB: 3hy5_A*
Length = 316
Score = 116 bits (293), Expect = 2e-31
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 88 LLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPV 143
LL + + Q +GF + ++ ++ + LR M+ LQD +PA FKAIHFI++P
Sbjct: 185 KLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPW 244
Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSI--IVHGQNLDS 201
+VKPFLK K +++ VHG +L Y + +ILP + F G++ +
Sbjct: 245 YFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSD-FGGTLPKYDGKAVAEQ 303
Query: 202 LYGANRPSWPCYEKNA 217
L+G E A
Sbjct: 304 LFG----PQAQAENTA 315
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with
vitamin E deficiency, transport protein; HET: MSE VIV;
1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A*
1oip_A*
Length = 262
Score = 107 bits (270), Expect = 1e-28
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 88 LLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPV 143
L++ + + Q +G + D +P++ + + + L D +P + + IH INEPV
Sbjct: 126 LIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV 185
Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIE 186
+ +++KPFL EK +++I +HG N DILP+E
Sbjct: 186 IFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLE 228
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 75.8 bits (186), Expect = 4e-16
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 98 SGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVK 153
+ D + + + ++ YP K + + P V L+K
Sbjct: 147 ETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIK 206
Query: 154 PFLKEKTRDKIIVHG-QNLDSLYGYLPRDILPIEIFNGS 191
PFL E TR KI+V G + L ++ D +P+E + G+
Sbjct: 207 PFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE-YGGT 244
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding
protein, peripheral golgi membrane protein, phospholipid
exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae}
SCOP: a.5.3.1 c.13.1.1
Length = 296
Score = 65.9 bits (161), Expect = 6e-13
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 9/128 (7%)
Query: 98 SGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKP 154
++D + +S Y+ + +R Q+ YP R + IN P L KP
Sbjct: 168 ETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKP 227
Query: 155 FLKEKTRDKIIVHGQN-LDSLYGYLPRDILPIEIFNGSI---IVHGQNLDSLYGANR-PS 209
FL T KI + G + L +P + LP F G G S G R P
Sbjct: 228 FLDPVTVSKIFILGSSYQKELLKQIPAENLP-VKFGGKSEVDESKGGLYLSDIGPWRDPK 286
Query: 210 WPCYEKNA 217
+ E A
Sbjct: 287 YIGPEGEA 294
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif,
signaling protein, directed evoluti SEC14, phospholipid
transporter, lipid; HET: PEE; 1.80A {Saccharomyces
cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Length = 320
Score = 63.7 bits (155), Expect = 4e-12
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 98 SGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKP 154
+LD + ++ Y + ++ + Q+ YP R + I+ P + +VKP
Sbjct: 183 ETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKP 242
Query: 155 FLKEKTRDKIIVHGQNLDS-LYGYLPRDILPIEIFNGS 191
FL T KI + G + L +P + LP + G+
Sbjct: 243 FLDPVTVSKIFILGSSYKKELLKQIPIENLP-VKYGGT 279
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 3e-05
Identities = 48/268 (17%), Positives = 71/268 (26%), Gaps = 84/268 (31%)
Query: 17 RPLR--------SLPVPA-------QLVESPLLSGGHLQVSPTP-DGLTPGGHQNPILRL 60
RPL L VP QL E ++ P P +G L
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQ------FNKILPEPTEGFAADDEPTTPAEL 60
Query: 61 C------VSSRLEPNVDLRQSDATSDHDIRTSGLLLVDTKIQY-SG-----FVF-LLDWN 107
VSS +EP S + L L + + Y G LL N
Sbjct: 61 VGKFLGYVSSLVEP------SKVGQFDQVLN--LCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 108 QTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVH 167
T++ + L++ Y A P AL + + + ++
Sbjct: 113 DTTLVKTKELIK--------NY---ITARIMAKRPFDKKSNSALFRAVGEGNAQ--LVAI 159
Query: 168 --GQ-N-------LDSLYG-YLPRDILPIEIFNGSIIVHGQNLDSLYGANRPSWPCYEKN 216
GQ N L LY Y + I + L L + + +
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVL----VGDL---IKFSAETLSELIRTTLDAEKVFTQ- 211
Query: 217 AGYRVKRPLERTE--------ASCETSL 236
G + LE S S
Sbjct: 212 -GLNILEWLENPSNTPDKDYLLSIPISC 238
Score = 37.0 bits (85), Expect = 0.005
Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 72/217 (33%)
Query: 15 QERP----LRSLPV--P----AQLVESPLLSGGHLQVSPTPDGLTPGGHQNPILRLCVSS 64
P L S+P+ P QL H V+ G TPG
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLA--------HYVVTAKLLGFTPG------------- 261
Query: 65 RLEPNVDLRQS-DATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSIY-ASPTLLRTM- 121
+LR + H S L+ I + W S + + + +
Sbjct: 262 ------ELRSYLKGATGH----SQGLVTAVAIAETD-----SWE--SFFVSVRKAITVLF 304
Query: 122 ISGL--QDCYPARFKAIHFINEPVQVDV-----LLALVKPFLKEKTRDKIIVHGQNLDSL 174
G+ + YP + + ++ + +L+ + T++++ + ++
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-----ISNLTQEQVQDY---VNKT 356
Query: 175 YGYLPRDILPIEI--FNG--SIIVHGQNLDSLYGANR 207
+LP +EI NG +++V G SLYG N
Sbjct: 357 NSHLPAG-KQVEISLVNGAKNLVVSG-PPQSLYGLNL 391
Score = 36.2 bits (83), Expect = 0.009
Identities = 49/240 (20%), Positives = 71/240 (29%), Gaps = 94/240 (39%)
Query: 1 MSSM----GKKLRRDT----IDQERPLRSLPVPAQ----LVESP---LLSG--------- 36
S M L ++ +++ LP Q LV ++SG
Sbjct: 335 PSPMLSISN--LTQEQVQDYVNKTN--SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 37 GHLQVSPTPDGL----TPGGHQNPI-----LRLCV---SSRLEPNVDLRQSDA------- 77
L+ + P GL P + L + S L P DL D
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF 450
Query: 78 -----------TSD-HDIRT-SGLL---LVDTKIQYSGFVFLLDWNQTSIYASPTLLRTM 121
T D D+R SG + +VD I + W T
Sbjct: 451 NAKDIQIPVYDTFDGSDLRVLSGSISERIVDC-I----IRLPVKWETT------------ 493
Query: 122 ISGLQDCYPARFKAIHFIN-EPVQVDVLLALVKPFLKEKTRDKIIVHG---QNLDSLYGY 177
+FKA H ++ P L L K+ T ++IV G N D YG+
Sbjct: 494 ---------TQFKATHILDFGPGGASGLGVLTHR-NKDGTGVRVIVAGTLDINPDDDYGF 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.047
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 60/210 (28%)
Query: 75 SDATSDHDIRTSGLLLVDTKIQYSGFVF-LLDWNQTSIYASPTLLRTMISGLQDCYPARF 133
S DH +++ + + +F L Q + + + L+ Y
Sbjct: 47 SKEEIDH------IIMSKDAVSGTLRLFWTLLSKQEEMVQ-----KFVEEVLRINYKFLM 95
Query: 134 KAIHF-INEPV--------QVDVLLALVKPFLKEK-TRDK-----------------IIV 166
I +P Q D L + F K +R + +++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 167 HGQN--------LDSLYGYLPRDILPIEIF---------NGSIIVHGQNLDSLYGANRPS 209
G LD Y + + +IF +++ + L L P+
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---EMLQKLLYQIDPN 212
Query: 210 WPCYEKNAGYRVKRPLERTEASCETSLKGR 239
W + +K + +A LK +
Sbjct: 213 W-TSRSDHSSNIKLRIHSIQAELRRLLKSK 241
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 29.3 bits (66), Expect = 0.94
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 100 FVFLLDWNQT--SIYASPTLLRTMISGLQDCYPARFKAIHFINEP 142
LL NQT I LLR + L++ + ARFK + ++
Sbjct: 177 VCHLLFANQTEKDI-----LLRPELEELRNKHSARFKLWYTLDRA 216
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Length = 145
Score = 25.8 bits (56), Expect = 8.4
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 126 QDCYPARFKAIHF-------INEPVQVDVLLALVK--PFLKEKTRDKIIVHGQNLDSLYG 176
QD +R K + I E ++D+L L F+ E + +N D+LY
Sbjct: 11 QDPMMSRLKTAVYDYLNDVDITECTEMDLLCQLSNCCDFINE-------TYAKNYDTLYD 63
Query: 177 YLPRDILPIEIFN 189
+ RDIL I N
Sbjct: 64 IMERDILSYNIVN 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.412
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,550,050
Number of extensions: 202704
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 327
Number of HSP's successfully gapped: 13
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)