RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15467
         (241 letters)



>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)

Query: 88  LLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQDCYPARFKAIHFINEPV 143
           L++ + + Q +G   + D            +P++ + + + L D +P + + IH INEPV
Sbjct: 52  LIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV 111

Query: 144 QVDVLLALVKPFLKEKTRDKIIVHGQNLDSLYGYLPRDILPIEIFNGSIIVHGQNLDSLY 203
               + +++KPFL EK +++I +HG N          DILP+E        +G    S+ 
Sbjct: 112 IFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDILPLE--------YGGEEFSME 163

Query: 204 GANRPSWPCYEKNAGY 219
              +       K+  Y
Sbjct: 164 DICQEWTNFIMKSEDY 179


>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF),
           middle domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 68.2 bits (166), Expect = 1e-14
 Identities = 24/120 (20%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 72  LRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSI----YASPTLLRTMISGLQD 127
           LR      +  ++           +      + D     +      +       +   ++
Sbjct: 46  LRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEE 105

Query: 128 CYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVHG-QNLDSLYGYLPRDILPIE 186
            YP   K +  +  P    V   L+KPFL E TR KI+V G    + L  ++  D +P+E
Sbjct: 106 NYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 165


>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of
           phosphatidylinositol transfer protein sec14p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 203

 Score = 63.2 bits (153), Expect = 6e-13
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 96  QYSGFVFLLD---WNQTSIYASPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALV 152
                  ++D    + +S Y+  + +R      Q+ YP R    + IN P        L 
Sbjct: 73  LVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLF 132

Query: 153 KPFLKEKTRDKIIVHGQN-LDSLYGYLPRDILPIE 186
           KPFL   T  KI + G +    L   +P + LP++
Sbjct: 133 KPFLDPVTVSKIFILGSSYQKELLKQIPAENLPVK 167


>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga
           maritima [TaxId: 2336]}
          Length = 120

 Score = 28.4 bits (63), Expect = 0.35
 Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 55  NPILRLCVSSRLEPN--VDLRQSDATSDHDIRTSGLLLVDTKIQYSGFVFLLDWNQTSIY 112
           +  +   VS +L+    V    +     +D     ++++D  +       +    + +  
Sbjct: 11  DKNILKKVSEKLQQLGRVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRP 70

Query: 113 ASPTLLRTMISGLQDCYPA-RFKAIHFINEPVQVDVLLALVKPFLKEKTR 161
            +  +L T++S  +         A  ++ +P   ++LLA VK FL+ + +
Sbjct: 71  ETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREKK 120


>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
           [TaxId: 562]}
          Length = 247

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 152 VKPFLKEKTRDKIIVHGQNLDSLYGYL----PRDILPIEIFNGSIIV 194
           + P +K   R  I  HG +L +L  YL      +IL + I  G  +V
Sbjct: 168 ILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLV 214


>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 241

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%)

Query: 164 IIVHGQNLDSLYGYL----PRDILPIEIFNGSIIV 194
           +  HG +L  L  +L      D+L + I  G  +V
Sbjct: 181 VAAHGNSLRGLVKHLDNLSEADVLELNIPTGVPLV 215


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 26.3 bits (57), Expect = 4.1
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 11/54 (20%)

Query: 114 SPTLLRTMISGLQDCYPARFKAIHFINEPVQVDVLLALVKPFLKEKTRDKIIVH 167
           +  LL + + G  D            +  VQ+ +L A+VK FLK+ +  + +V 
Sbjct: 459 ADELLESFLEGFHDE-----------STQVQLTLLTAIVKLFLKKPSETQELVQ 501


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 867,346
Number of extensions: 38488
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 7
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)