Query psy15468
Match_columns 653
No_of_seqs 506 out of 2805
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 21:49:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474|consensus 100.0 6.9E-28 1.5E-32 276.5 15.5 224 121-383 8-328 (640)
2 KOG0008|consensus 99.9 1E-27 2.2E-32 277.0 8.1 331 51-542 1220-1551(1563)
3 KOG1474|consensus 99.9 7.7E-27 1.7E-31 268.0 14.6 266 294-567 7-326 (640)
4 cd05524 Bromo_polybromo_I Brom 99.9 5.7E-26 1.2E-30 206.0 10.6 111 98-241 1-111 (113)
5 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.2E-25 2.6E-30 202.1 11.4 105 459-564 2-106 (107)
6 cd05515 Bromo_polybromo_V Brom 99.9 9.5E-26 2.1E-30 202.1 10.5 103 460-563 2-104 (105)
7 cd05525 Bromo_ASH1 Bromodomain 99.9 1.2E-25 2.6E-30 201.4 11.2 104 458-562 2-105 (106)
8 cd05517 Bromo_polybromo_II Bro 99.9 1.3E-25 2.7E-30 200.4 10.3 101 275-375 2-102 (103)
9 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.8E-25 3.9E-30 201.0 11.0 104 275-378 3-106 (107)
10 cd05525 Bromo_ASH1 Bromodomain 99.9 3E-25 6.4E-30 198.9 11.1 101 275-375 4-104 (106)
11 cd05515 Bromo_polybromo_V Brom 99.9 3.1E-25 6.6E-30 198.8 10.7 102 276-377 3-104 (105)
12 cd05524 Bromo_polybromo_I Brom 99.9 3.5E-25 7.5E-30 200.9 11.2 108 275-382 4-111 (113)
13 cd05517 Bromo_polybromo_II Bro 99.9 2.5E-25 5.4E-30 198.5 10.1 101 460-561 2-102 (103)
14 cd05518 Bromo_polybromo_IV Bro 99.9 3.2E-25 7E-30 197.7 9.9 101 460-561 2-102 (103)
15 cd05520 Bromo_polybromo_III Br 99.9 3.6E-25 7.9E-30 197.5 10.1 100 276-375 3-102 (103)
16 cd05520 Bromo_polybromo_III Br 99.9 5E-25 1.1E-29 196.6 10.3 99 462-561 4-102 (103)
17 cd05518 Bromo_polybromo_IV Bro 99.9 9.5E-25 2.1E-29 194.7 10.0 100 276-375 3-102 (103)
18 cd05519 Bromo_SNF2 Bromodomain 99.9 1.6E-24 3.5E-29 193.6 10.3 102 459-561 1-102 (103)
19 cd05519 Bromo_SNF2 Bromodomain 99.9 2.2E-24 4.7E-29 192.8 11.0 101 275-375 2-102 (103)
20 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.8E-24 6.2E-29 192.2 10.3 102 458-560 1-102 (104)
21 cd05526 Bromo_polybromo_VI Bro 99.9 5.7E-24 1.2E-28 190.2 11.5 107 458-567 3-109 (110)
22 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 6.3E-24 1.4E-28 190.2 10.7 101 459-562 2-102 (106)
23 cd05505 Bromo_WSTF_like Bromod 99.9 5.3E-24 1.2E-28 187.9 9.6 95 275-375 2-96 (97)
24 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 1.1E-23 2.4E-28 188.7 10.1 101 275-377 3-103 (106)
25 COG5076 Transcription factor i 99.9 8.3E-24 1.8E-28 229.8 10.2 219 102-379 145-363 (371)
26 cd05522 Bromo_Rsc1_2_II Bromod 99.9 2.6E-23 5.7E-28 186.0 10.4 99 276-374 4-102 (104)
27 cd05496 Bromo_WDR9_II Bromodom 99.9 4.1E-23 8.9E-28 188.5 10.9 101 275-381 7-108 (119)
28 cd05505 Bromo_WSTF_like Bromod 99.9 3.7E-23 8E-28 182.5 9.6 95 101-234 2-96 (97)
29 cd05497 Bromo_Brdt_I_like Brom 99.9 5.9E-23 1.3E-27 184.5 11.1 99 275-379 7-107 (107)
30 COG5076 Transcription factor i 99.9 4.3E-23 9.4E-28 224.2 11.6 218 275-563 144-361 (371)
31 cd05504 Bromo_Acf1_like Bromod 99.9 9.8E-23 2.1E-27 185.4 11.7 104 271-380 10-113 (115)
32 cd05495 Bromo_cbp_like Bromodo 99.9 1.3E-22 2.8E-27 182.7 11.8 102 272-379 2-106 (108)
33 cd05497 Bromo_Brdt_I_like Brom 99.9 7.6E-23 1.7E-27 183.8 9.8 96 104-238 10-107 (107)
34 cd05503 Bromo_BAZ2A_B_like Bro 99.9 7.9E-23 1.7E-27 180.7 9.6 96 275-376 2-97 (97)
35 cd05496 Bromo_WDR9_II Bromodom 99.9 1.6E-22 3.5E-27 184.7 11.5 104 457-567 4-108 (119)
36 cd05499 Bromo_BDF1_2_II Bromod 99.9 1.6E-22 3.6E-27 180.4 9.9 99 275-376 2-102 (102)
37 cd05504 Bromo_Acf1_like Bromod 99.9 1.8E-22 4E-27 183.6 10.0 101 99-238 12-112 (115)
38 cd05502 Bromo_tif1_like Bromod 99.9 4.5E-22 9.8E-27 179.6 12.2 103 272-381 3-108 (109)
39 cd05503 Bromo_BAZ2A_B_like Bro 99.9 2.1E-22 4.6E-27 178.0 9.6 96 101-235 2-97 (97)
40 cd05508 Bromo_RACK7 Bromodomai 99.9 2.7E-22 5.8E-27 177.6 9.9 80 122-234 19-98 (99)
41 cd05507 Bromo_brd8_like Bromod 99.9 3.6E-22 7.7E-27 178.7 10.6 98 275-378 5-102 (104)
42 cd05510 Bromo_SPT7_like Bromod 99.9 5.2E-22 1.1E-26 179.6 11.1 103 273-380 7-110 (112)
43 cd05495 Bromo_cbp_like Bromodo 99.9 5.1E-22 1.1E-26 178.8 10.8 100 102-239 6-107 (108)
44 cd05501 Bromo_SP100C_like Brom 99.9 7.3E-22 1.6E-26 174.8 11.5 97 274-379 3-99 (102)
45 cd05508 Bromo_RACK7 Bromodomai 99.9 5.2E-22 1.1E-26 175.7 10.3 94 275-375 5-98 (99)
46 cd05509 Bromo_gcn5_like Bromod 99.9 6.1E-22 1.3E-26 176.4 10.8 99 275-379 3-101 (101)
47 cd05507 Bromo_brd8_like Bromod 99.9 8.8E-22 1.9E-26 176.2 11.2 101 458-565 3-103 (104)
48 cd05498 Bromo_Brdt_II_like Bro 99.9 8.3E-22 1.8E-26 175.8 10.2 99 275-376 2-102 (102)
49 cd05526 Bromo_polybromo_VI Bro 99.9 1.6E-21 3.6E-26 174.4 11.4 104 275-380 5-108 (110)
50 cd05509 Bromo_gcn5_like Bromod 99.9 1.5E-21 3.3E-26 173.8 10.6 101 458-565 1-101 (101)
51 cd05510 Bromo_SPT7_like Bromod 99.9 2.4E-21 5.2E-26 175.3 11.5 104 457-566 6-110 (112)
52 cd05499 Bromo_BDF1_2_II Bromod 99.9 1.8E-21 3.8E-26 173.7 10.1 98 461-562 3-102 (102)
53 cd05511 Bromo_TFIID Bromodomai 99.9 2.3E-21 5.1E-26 175.6 10.6 100 276-381 3-102 (112)
54 cd05513 Bromo_brd7_like Bromod 99.9 1.9E-21 4.1E-26 171.8 9.2 92 102-232 4-95 (98)
55 cd05513 Bromo_brd7_like Bromod 99.8 2.3E-21 5E-26 171.3 9.5 92 275-372 3-94 (98)
56 cd05506 Bromo_plant1 Bromodoma 99.8 2.9E-21 6.2E-26 171.4 10.1 96 275-376 2-99 (99)
57 cd05500 Bromo_BDF1_2_I Bromodo 99.8 4.1E-21 8.8E-26 171.7 10.8 98 272-375 3-102 (103)
58 cd05511 Bromo_TFIID Bromodomai 99.8 2.7E-21 5.9E-26 175.2 9.5 97 103-238 4-100 (112)
59 cd05512 Bromo_brd1_like Bromod 99.8 3.7E-21 8E-26 170.2 9.6 90 276-371 4-93 (98)
60 cd05528 Bromo_AAA Bromodomain; 99.8 6.3E-21 1.4E-25 172.6 10.9 100 275-380 5-108 (112)
61 cd05501 Bromo_SP100C_like Brom 99.8 5.6E-21 1.2E-25 169.2 10.3 97 101-239 4-100 (102)
62 cd05512 Bromo_brd1_like Bromod 99.8 4.2E-21 9.2E-26 169.8 9.4 93 458-557 1-93 (98)
63 cd05502 Bromo_tif1_like Bromod 99.8 1.4E-20 3E-25 170.0 12.4 102 458-567 4-108 (109)
64 cd05498 Bromo_Brdt_II_like Bro 99.8 1E-20 2.2E-25 168.8 10.4 99 460-562 2-102 (102)
65 cd05528 Bromo_AAA Bromodomain; 99.8 8.3E-21 1.8E-25 171.8 9.9 100 102-240 6-109 (112)
66 cd05529 Bromo_WDR9_I_like Brom 99.8 1.3E-20 2.9E-25 174.6 11.3 103 101-236 23-126 (128)
67 cd05506 Bromo_plant1 Bromodoma 99.8 1E-20 2.2E-25 167.9 9.9 95 102-235 3-99 (99)
68 cd05529 Bromo_WDR9_I_like Brom 99.8 2.7E-20 5.9E-25 172.5 10.9 100 275-377 26-126 (128)
69 cd05500 Bromo_BDF1_2_I Bromodo 99.8 2.9E-20 6.4E-25 166.2 10.1 95 101-234 6-102 (103)
70 smart00297 BROMO bromo domain. 99.8 6.6E-20 1.4E-24 164.4 10.6 103 460-565 5-107 (107)
71 smart00297 BROMO bromo domain. 99.8 7.3E-20 1.6E-24 164.1 10.2 101 276-378 6-106 (107)
72 KOG1827|consensus 99.8 6.5E-20 1.4E-24 204.2 9.6 227 341-652 3-231 (629)
73 KOG1472|consensus 99.8 8.5E-19 1.8E-23 198.1 10.9 98 276-379 609-706 (720)
74 PF00439 Bromodomain: Bromodom 99.8 1.5E-18 3.4E-23 148.7 9.0 84 278-367 1-84 (84)
75 cd05492 Bromo_ZMYND11 Bromodom 99.8 3.7E-18 8.1E-23 153.2 11.2 98 278-380 5-107 (109)
76 cd05492 Bromo_ZMYND11 Bromodom 99.8 3E-18 6.4E-23 153.9 10.1 83 123-238 19-106 (109)
77 cd04369 Bromodomain Bromodomai 99.8 2.5E-18 5.5E-23 150.3 9.3 96 276-375 3-98 (99)
78 PF00439 Bromodomain: Bromodom 99.8 2.1E-18 4.6E-23 147.8 8.4 84 104-226 1-84 (84)
79 KOG1827|consensus 99.7 1.9E-18 4.2E-23 192.5 8.7 282 200-556 3-286 (629)
80 cd04369 Bromodomain Bromodomai 99.7 5E-18 1.1E-22 148.4 9.5 96 461-561 3-98 (99)
81 KOG1472|consensus 99.7 4.8E-18 1E-22 192.1 11.5 96 463-565 611-706 (720)
82 KOG0008|consensus 99.7 4.1E-17 8.8E-22 190.0 11.5 208 276-554 1264-1471(1563)
83 KOG1245|consensus 99.6 9.8E-16 2.1E-20 186.7 7.6 96 104-239 1306-1401(1404)
84 KOG1245|consensus 99.5 1.7E-14 3.7E-19 175.9 7.7 95 278-379 1306-1400(1404)
85 KOG0386|consensus 99.3 5.1E-12 1.1E-16 145.4 7.2 107 461-568 1027-1133(1157)
86 KOG1828|consensus 99.3 1.8E-12 3.9E-17 135.9 3.1 209 123-370 37-298 (418)
87 KOG1828|consensus 99.2 5.7E-12 1.2E-16 132.2 4.0 245 298-556 38-298 (418)
88 KOG0386|consensus 99.2 3.2E-11 6.9E-16 138.9 6.9 106 276-381 1027-1132(1157)
89 cd05494 Bromodomain_1 Bromodom 98.9 5.9E-10 1.3E-14 101.5 4.4 55 102-159 3-59 (114)
90 cd05491 Bromo_TBP7_like Bromod 98.8 1E-08 2.2E-13 92.6 6.1 41 318-358 63-103 (119)
91 cd05494 Bromodomain_1 Bromodom 98.7 5.3E-09 1.1E-13 95.2 2.9 78 276-356 3-89 (114)
92 cd05491 Bromo_TBP7_like Bromod 98.7 1.1E-08 2.3E-13 92.5 4.4 41 504-544 63-103 (119)
93 KOG0955|consensus 98.6 6.9E-08 1.5E-12 114.8 6.3 82 123-237 583-664 (1051)
94 KOG0955|consensus 98.5 1.9E-07 4.1E-12 111.2 7.4 105 456-567 563-667 (1051)
95 cd05493 Bromo_ALL-1 Bromodomai 94.5 0.068 1.5E-06 49.8 5.4 61 505-565 59-119 (131)
96 cd05493 Bromo_ALL-1 Bromodomai 93.0 0.17 3.7E-06 47.2 5.1 60 319-378 59-118 (131)
97 KOG0644|consensus 87.4 0.32 7E-06 57.0 2.1 59 502-560 1050-1108(1113)
98 KOG0644|consensus 80.1 1.3 2.9E-05 52.1 3.1 54 182-235 1057-1110(1113)
99 cd04718 BAH_plant_2 BAH, or Br 74.2 1.8 3.8E-05 41.3 1.6 21 20-41 10-30 (148)
100 TIGR02606 antidote_CC2985 puta 42.9 34 0.00073 28.3 3.7 29 509-537 12-40 (69)
101 KOG0732|consensus 40.2 7.9 0.00017 47.6 -0.6 50 309-358 550-601 (1080)
102 KOG0732|consensus 36.6 11 0.00025 46.3 -0.1 82 461-544 513-601 (1080)
103 TIGR02606 antidote_CC2985 puta 33.7 63 0.0014 26.7 3.9 28 323-350 12-39 (69)
104 PF11498 Activator_LAG-3: Tran 29.1 18 0.0004 38.9 0.0 22 22-43 244-265 (468)
105 PF03693 RHH_2: Uncharacterise 28.8 70 0.0015 27.3 3.5 27 509-535 15-41 (80)
106 PF03693 RHH_2: Uncharacterise 23.8 98 0.0021 26.4 3.5 27 323-349 15-41 (80)
107 PHA02888 hypothetical protein; 21.7 88 0.0019 26.5 2.7 58 103-186 7-67 (96)
No 1
>KOG1474|consensus
Probab=99.95 E-value=6.9e-28 Score=276.54 Aligned_cols=224 Identities=24% Similarity=0.380 Sum_probs=180.2
Q ss_pred ccccccccCCC--CCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHHHhhhcccCcCCCHHH
Q psy15468 121 LLCDPFIRIPK--KRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSD 198 (653)
Q Consensus 121 ~~~~~F~~~v~--~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~~~~~~~~~~Y~~~~~ 198 (653)
.++|+|..||+ ....|+||++|++|||+.||..++.+ .| |....+
T Consensus 8 ~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~-n~--------------------------------~~~~~~ 54 (640)
T KOG1474|consen 8 KLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVEN-NY--------------------------------YFSASE 54 (640)
T ss_pred cccccccCccchhhccchhhhcccCCCCCchhhhhhhcc-Cc--------------------------------cccHhh
Confidence 46999999996 78999999999999999999999999 54 899999
Q ss_pred HHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCCCCCCC--------------c---------cc------
Q psy15468 199 FQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEG--------------T---------SQ------ 249 (653)
Q Consensus 199 f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~~~~~--------------~---------~~------ 249 (653)
..+|+..+|.||..||...-.+...+..+.+++.+....+........ + ..
T Consensus 55 ~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (640)
T KOG1474|consen 55 CIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLSERLKQELQQ 134 (640)
T ss_pred hhhhccccccchhcccCCccchhhccccchhhcccccccccccccCCcccccccccCcCCCCchhhhhhhhhcccccccc
Confidence 999999999999999999999999999999988766654432211100 0 00
Q ss_pred ----ccccc---------c---------------cCCC----------cccCC------C--C-----------------
Q psy15468 250 ----KRSMD---------F---------------MMAS----------ETEDS------R--D----------------- 266 (653)
Q Consensus 250 ----~r~~~---------~---------------~~~~----------~~~~~------~--~----------------- 266 (653)
..++. . ...+ ...++ . .
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (640)
T KOG1474|consen 135 VRPLTKAVEFSPEPSVVSPVSPASQPFKSKNGVKKVADTCVKSYKSKSEREPSPGQKREGTVAPNSSRESGDSAAEEEAK 214 (640)
T ss_pred CCcccccccccccccccCCCCCcccccccccchhhhhccccccccccCcCCCCccccccccccCcccccccccccccccc
Confidence 00000 0 0000 00000 0 0
Q ss_pred -CCCCChHHHHHHHHHHHHHHhccCCCCccccccccccccc--CCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHH
Q psy15468 267 -SSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSK--KRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKD 343 (653)
Q Consensus 267 -ss~~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~--~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D 343 (653)
.+..+.+..+.|..||..|+.+++ +|||..||+. .++||||+||++||||+||+.||.++.|.++.+|..|
T Consensus 215 ~~~~~~~~~lk~C~~iLk~l~~~k~------awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~D 288 (640)
T KOG1474|consen 215 PKSKLTVELLKQCLSILKRLMKHKH------AWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAAD 288 (640)
T ss_pred ccccccHHHHHHHHHHHHHHHhccC------CCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHH
Confidence 011123457999999999999998 7999999875 6899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q psy15468 344 LILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGK 383 (653)
Q Consensus 344 v~Lmf~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~~ 383 (653)
|+|||.||++||++|++||.+|..|+.+|+.+|+.+....
T Consensus 289 VRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~ 328 (640)
T KOG1474|consen 289 VRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEI 328 (640)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999999999999999999999999999876543
No 2
>KOG0008|consensus
Probab=99.94 E-value=1e-27 Score=277.00 Aligned_cols=331 Identities=21% Similarity=0.335 Sum_probs=262.7
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-hhhcCCccccccccC
Q psy15468 51 ATLPPKRFIMGKRRRASSLTRSVDDDDDSSSHTSETPTMQTRPKRKKIDPSDAMQQIYDVIRNF-KKEDGALLCDPFIRI 129 (653)
Q Consensus 51 ~~~~~~~~~~~krr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-k~~~~~~~~~~F~~~ 129 (653)
.+..|+.++..++||.++..+ ++.... +.++..|++.||...++.|+.+|.+- +.-. ...||..|
T Consensus 1220 ~Lk~p~~a~~~sKrrs~~~~h-----~dyl~~------~~k~~~r~r~dP~V~~ss~l~~i~n~~~~~~---~t~~f~~P 1285 (1563)
T KOG0008|consen 1220 KLKIPSKAKPKSKRRSGTTVH-----CDYLQR------PRKRGHRRRTDPSVSLSSILETIINQARSSP---NTYPFPTP 1285 (1563)
T ss_pred eeccCcccccccccccCCCch-----hhhccc------chhhhhhhcCCCeeecccchHHHHHHHhcCC---CCcCCCCc
Confidence 445566666567777776665 334422 36788899999999999999988764 3333 48999999
Q ss_pred CCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHHHhhhcccCcCCCHHHHHHHHHHHHHh
Q psy15468 130 PKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKN 209 (653)
Q Consensus 130 v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~N 209 (653)
|+...++|||.||+.||||+|+++.+.... |...+.|+.|+.||++|
T Consensus 1286 v~~k~v~dyy~vi~~P~~lq~~kk~v~kr~---------------------------------y~~r~~fle~~~~~~~n 1332 (1563)
T KOG0008|consen 1286 VNAKEVKDYYRVITPPMDLQTQKKLVRKRL---------------------------------YESREHFLEELPLIVSN 1332 (1563)
T ss_pred cchhhccchhhccCCCcchHHHHHHHHHHH---------------------------------HHHHHHHHHHhHHHhhc
Confidence 999999999999999999999999999999 99999999999999999
Q ss_pred hhccccCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccCCCcccCCCCCCCCChHHHHHHHHHHHHHHhcc
Q psy15468 210 AKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQNQCEDLFNAVMTST 289 (653)
Q Consensus 210 a~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ss~~~~~~~~~~~~ll~~l~~~~ 289 (653)
...||++.+.+.+.++.+...+-..+.+- ++.. ....+.|++.+++++.. .+ .+++.+...
T Consensus 1333 s~~yng~~~~~t~~~q~mls~~~~~~~ek---edk~-~~lEk~Inplld~~d~v-------------~~-~~~d~~vs~- 1393 (1563)
T KOG0008|consen 1333 STKYNGPLASLTRQQQSMLSLCFEKLKEK---EDKL-WRLEKAINPLLDDDDQV-------------AF-FILDNIVSQ- 1393 (1563)
T ss_pred hhhhcCchHHHHHHHHHHHHHHHHhhchh---HHHH-HHHHhhcCcccCccchh-------------hH-hhhhhHHHH-
Confidence 99999999999999999887766544321 1100 11234566666665432 23 566665543
Q ss_pred CCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHH
Q psy15468 290 DADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALK 369 (653)
Q Consensus 290 d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~ 369 (653)
....+-+|+|+++++++..|+||.+|++||||.+|.+++..+.|.+.++|.+|+++|+.||..||++.+....-|+.+-
T Consensus 1394 -~~~ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ 1472 (1563)
T KOG0008|consen 1394 -MKEIPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIG 1472 (1563)
T ss_pred -HHhcchhcccccccchhhchHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHH
Confidence 2345669999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHhhhcCCCCCCCcccccccccccCCCCchhhhhcCCCCCCCCCCcccccCCCCCCCchhhhhhhhccccCCcc
Q psy15468 370 KLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLWQVYDAIRNAKTQGVI 449 (653)
Q Consensus 370 ~~~~~~~~~i~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~e~~~~sd~e~~~~~~~~~P~~~~~~~ir~~~~~g~~ 449 (653)
.+....+.+...
T Consensus 1473 ev~~~~~~e~~~-------------------------------------------------------------------- 1484 (1563)
T KOG0008|consen 1473 EVGLANLLEYIE-------------------------------------------------------------------- 1484 (1563)
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 766554332210
Q ss_pred cccccCCHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHH
Q psy15468 450 FFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVAD 529 (653)
Q Consensus 450 ~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D 529 (653)
+.+ .++ ..+|..|..++.+.+.|+|-+++. ||+.+|..++..-.|.+-.+|-+|
T Consensus 1485 ------------------~~~-~le-----~~is~~~~~a~~~~ea~~~dd~~~--~d~~t~~d~~~d~e~~~~~~~~~~ 1538 (1563)
T KOG0008|consen 1485 ------------------HLL-QLE-----ENISTLFEAAVEKAEAPDYDDIVP--GDLSTIPDDVRDTEYSDSMQRDAD 1538 (1563)
T ss_pred ------------------HHH-HHH-----HhHHHHHHHHHHhhhcCCccccCC--CCCCCCcchhhccccchhhhcccc
Confidence 000 011 225677888888888999999988 999999999999999999999999
Q ss_pred HHHHHHHHhhhcC
Q psy15468 530 FIQMFDNACKYNE 542 (653)
Q Consensus 530 ~~Lmf~Na~~YN~ 542 (653)
+.++=.||-.|-+
T Consensus 1539 ~~q~~~n~~~~~g 1551 (1563)
T KOG0008|consen 1539 VWQIKSNAHVYDG 1551 (1563)
T ss_pred eeeeccccccccC
Confidence 9999999988843
No 3
>KOG1474|consensus
Probab=99.94 E-value=7.7e-27 Score=267.95 Aligned_cols=266 Identities=21% Similarity=0.308 Sum_probs=175.8
Q ss_pred ccccccccccccc--CCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHH
Q psy15468 294 RPLHEVFQLLPSK--KRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKL 371 (653)
Q Consensus 294 ~~~a~~F~~~p~~--~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~~~ 371 (653)
+.++|+|..+++. ...|+||.+|++|||+++|..++.++.|.+..+..+|+..+|.||..||.++-.|+.++..++.+
T Consensus 7 ~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~ 86 (640)
T KOG1474|consen 7 HKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKL 86 (640)
T ss_pred ccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhh
Confidence 4569999999874 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCC---Ccccc-------------cccccccCCCCchhhhhcCC---------C-CCCC--------
Q psy15468 372 VQTKKMEIEQGKFTPA---GKSER-------------IRSKRIRGGQSLSAITAALE---------S-EDDE-------- 417 (653)
Q Consensus 372 ~~~~~~~i~~~~~~~~---~k~~r-------------~~~~~~~~~~~~~~~~~~~~---------~-e~~~-------- 417 (653)
|.......+....... .+... +..+....-........... . ..+.
T Consensus 87 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (640)
T KOG1474|consen 87 FPKKLRSMPSDEEDKSSVGPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVEFSPEPSVVSPVSPASQPFKSKNG 166 (640)
T ss_pred cccccccccccccCCcccccccccCcCCCCchhhhhhhhhccccccccCCcccccccccccccccCCCCCcccccccccc
Confidence 9877776654432110 00000 00000000000000000000 0 0000
Q ss_pred -CCCcccc-cC---C--CCCCCchhhhhhhhcc---ccCC------cccccccCCHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy15468 418 -SEDDEEI-DQ---E--DPNSPLWQVYDAIRNA---KTQG------VIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQ 481 (653)
Q Consensus 418 -~sd~e~~-~~---~--~~~~P~~~~~~~ir~~---~~~g------~~~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ 481 (653)
....+.. .. . ...++.. ........ ...+ .....+..+..+...|..|++.|.. +.
T Consensus 167 ~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~C~~iLk~l~~-------~k 238 (640)
T KOG1474|consen 167 VKKVADTCVKSYKSKSEREPSPGQ-KREGTVAPNSSRESGDSAAEEEAKPKSKLTVELLKQCLSILKRLMK-------HK 238 (640)
T ss_pred hhhhhccccccccccCcCCCCccc-cccccccCccccccccccccccccccccccHHHHHHHHHHHHHHHh-------cc
Confidence 0000000 00 0 0000000 00000000 0000 0000011123334445555555554 33
Q ss_pred cccccccCcCC--CCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy15468 482 LSHIFQRLPSR--HDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVL 559 (653)
Q Consensus 482 ls~~F~~lP~~--~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~~~~ 559 (653)
.+|+|..|++. .++||||+||++||||+||++||.++.|.++.+|.+||+|||.||++||++|+.||.+|..|+.+|+
T Consensus 239 ~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe 318 (640)
T KOG1474|consen 239 HAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFE 318 (640)
T ss_pred CCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 46999999876 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcC
Q psy15468 560 QTKMHLRE 567 (653)
Q Consensus 560 ~~~~eL~~ 567 (653)
.+|..+..
T Consensus 319 ~rw~~~~~ 326 (640)
T KOG1474|consen 319 ERWASMPL 326 (640)
T ss_pred HHHhhccc
Confidence 99998654
No 4
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=5.7e-26 Score=205.96 Aligned_cols=111 Identities=59% Similarity=1.028 Sum_probs=107.3
Q ss_pred CChHHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcC
Q psy15468 98 IDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTN 177 (653)
Q Consensus 98 ~~~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~ 177 (653)
.||.+.|..|++.|+++++++|++++.+|+++|++..+||||++|++||||+||++||+++.
T Consensus 1 ~~~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~------------------ 62 (113)
T cd05524 1 LDPIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEE------------------ 62 (113)
T ss_pred CcHHHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCC------------------
Confidence 37899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCC
Q psy15468 178 PIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNP 241 (653)
Q Consensus 178 P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~ 241 (653)
|.++.+|..|+.|||+||..||+++|.++++|..|++.|.+.+++++..
T Consensus 63 ---------------Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 63 ---------------YDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999888654
No 5
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.2e-25 Score=202.05 Aligned_cols=105 Identities=32% Similarity=0.621 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy15468 459 SLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNAC 538 (653)
Q Consensus 459 ~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~ 538 (653)
++++|+.|++.|++++++.| ++++++|.++|++..+||||++|++||||++|++||++|.|.++++|..||.|||.||+
T Consensus 2 l~~~~~~il~~v~~~~d~~g-~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDG-RQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCC-CEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57889999999999999988 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHh
Q psy15468 539 KYNEPDSHIYKDALSLQRIVLQTKMH 564 (653)
Q Consensus 539 ~YN~~~S~iy~dA~~L~~~~~~~~~e 564 (653)
+||+++|.||.+|..|+++|.+.+++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988765
No 6
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=9.5e-26 Score=202.11 Aligned_cols=103 Identities=61% Similarity=1.037 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy15468 460 LQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACK 539 (653)
Q Consensus 460 ~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~ 539 (653)
+++|+.|+++|++++++.| ++++++|+++|++.++|+||++|++||||++|++||+++.|.|+++|.+||.|||.||++
T Consensus 2 ~~~~~~~~~~i~~~~d~~~-~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~ 80 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRG-RRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACK 80 (105)
T ss_pred hHHHHHHHHHHHHhhCcCC-CcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999988 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHH
Q psy15468 540 YNEPDSHIYKDALSLQRIVLQTKM 563 (653)
Q Consensus 540 YN~~~S~iy~dA~~L~~~~~~~~~ 563 (653)
||+++|.+|.+|..|+++|.+++.
T Consensus 81 yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 81 YNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999987764
No 7
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.2e-25 Score=201.40 Aligned_cols=104 Identities=29% Similarity=0.458 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy15468 458 ASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNA 537 (653)
Q Consensus 458 ~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na 537 (653)
.+.+.|+.|++.|.+++++.| +.+|++|+++|++..+||||++|++||||++|++||++|.|.|+++|..||.|||.||
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~g-~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSNG-QSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred hHHHHHHHHHHHHHHhhccCC-CcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 367789999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHH
Q psy15468 538 CKYNEPDSHIYKDALSLQRIVLQTK 562 (653)
Q Consensus 538 ~~YN~~~S~iy~dA~~L~~~~~~~~ 562 (653)
++||+++|.||++|..|+++|++.+
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~~ 105 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQAK 105 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999998764
No 8
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.93 E-value=1.3e-25 Score=200.44 Aligned_cols=101 Identities=61% Similarity=0.911 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
++.|.+|+++|++++|++|++++++|+.+|++..+|+||++|++||||++|++||+++.|.++.+|..||+|||.||+.|
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKTF 81 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy15468 355 NEPGSQIYKDAKALKKLVQTK 375 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~ 375 (653)
|+++|.||.+|..|+++|..+
T Consensus 82 N~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 82 NEPGSQVYKDANAIKKIFTAK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999753
No 9
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=1.8e-25 Score=200.96 Aligned_cols=104 Identities=40% Similarity=0.729 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.+.|..|++.|+++++++|++++++|+++|++..+||||++|++||||++|++||++|.|.++++|..||.|||.||+.|
T Consensus 3 ~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 82 (107)
T cd05516 3 TKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQTF 82 (107)
T ss_pred HHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKME 378 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~ 378 (653)
|+++|.||.+|..|+++|.+.+..
T Consensus 83 N~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 83 NLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987764
No 10
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=3e-25 Score=198.88 Aligned_cols=101 Identities=30% Similarity=0.487 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.+.|..|++.|..+++++|++++++|+++|++..+|+||++|++||||++|++||++|.|.++++|..|+.|||.||+.|
T Consensus 4 ~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na~~y 83 (106)
T cd05525 4 AQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNAEKY 83 (106)
T ss_pred HHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy15468 355 NEPGSQIYKDAKALKKLVQTK 375 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~ 375 (653)
|+++|.||.+|..|+++|++.
T Consensus 84 n~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 84 YGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred CCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999864
No 11
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=3.1e-25 Score=198.84 Aligned_cols=102 Identities=48% Similarity=0.794 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
+.|..|++.|+.++|+.|++++++|+++|++..+|+||++|++||||++|++||+++.|.++++|..||.|||.||++||
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~~yN 82 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNACKYN 82 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q psy15468 356 EPGSQIYKDAKALKKLVQTKKM 377 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~~~~ 377 (653)
+++|.||.+|..|+++|.++..
T Consensus 83 ~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 83 EPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred CCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999987643
No 12
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=3.5e-25 Score=200.86 Aligned_cols=108 Identities=31% Similarity=0.565 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.+.|..|++.|+++++++|++++.+|.++|++..+|+||++|++||||+||++||+++.|.++++|..||.|||.||+.|
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
|+++|.+|.+|..|+++|++.+.++..+
T Consensus 84 N~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 84 YKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999998887655
No 13
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=2.5e-25 Score=198.52 Aligned_cols=101 Identities=36% Similarity=0.687 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy15468 460 LQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACK 539 (653)
Q Consensus 460 ~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~ 539 (653)
++.|..|+++|++++|+.| ++++++|.++|++..+||||++|++||||++|++||+++.|.|+++|..||.|||.||++
T Consensus 2 ~~~~~~l~~~i~~~~d~~g-r~~~~~F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 2 KQILEQLLEAVMTATDPSG-RLISELFQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred hHHHHHHHHHHHHhhCcCC-CChhHHHhcCCCCCCCCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHH
Q psy15468 540 YNEPDSHIYKDALSLQRIVLQT 561 (653)
Q Consensus 540 YN~~~S~iy~dA~~L~~~~~~~ 561 (653)
||+++|.+|.+|..|+++|..+
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTAK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999653
No 14
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=3.2e-25 Score=197.74 Aligned_cols=101 Identities=36% Similarity=0.677 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy15468 460 LQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACK 539 (653)
Q Consensus 460 ~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~ 539 (653)
+++|+.|++.|.+++|..| +.++.+|+.+|++..+||||++|++||||++|++||+++.|.|+++|.+||.|||.||+.
T Consensus 2 ~~~~~~l~~~v~~~~d~~g-r~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 2 KKRMLALFLYVLEYREGSG-RRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred hHHHHHHHHHHHHhhccCC-CcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHH
Q psy15468 540 YNEPDSHIYKDALSLQRIVLQT 561 (653)
Q Consensus 540 YN~~~S~iy~dA~~L~~~~~~~ 561 (653)
||+++|.||.+|..|+++|.++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999764
No 15
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=3.6e-25 Score=197.48 Aligned_cols=100 Identities=41% Similarity=0.731 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
+.+..|+++|+++++++|++++++|+++|++..+|+||++|++||||+||++||+++.|.++++|..||+|||.||+.||
T Consensus 3 ~~~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 3 NPLWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred chHHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy15468 356 EPGSQIYKDAKALKKLVQTK 375 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~~ 375 (653)
+++|.+|.+|..|+++|+++
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999864
No 16
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.92 E-value=5e-25 Score=196.58 Aligned_cols=99 Identities=40% Similarity=0.755 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhc
Q psy15468 462 KMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYN 541 (653)
Q Consensus 462 ~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~YN 541 (653)
.+..|+++|++++++.| ++++++|+++|++..+||||++|++||||++|++||+++.|.++++|++||+|||.||++||
T Consensus 4 ~~~~l~~~i~~~~~~~g-~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN 82 (103)
T cd05520 4 PLWQLYDTIRNARNNQG-QLLAEPFLKLPSKRKYPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYN 82 (103)
T ss_pred hHHHHHHHHHhhcCCCC-CCccHhhhcCCCcccCCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 46789999999999988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy15468 542 EPDSHIYKDALSLQRIVLQT 561 (653)
Q Consensus 542 ~~~S~iy~dA~~L~~~~~~~ 561 (653)
+++|.+|.+|..|+++|+++
T Consensus 83 ~~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 83 VPNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999765
No 17
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=9.5e-25 Score=194.72 Aligned_cols=100 Identities=41% Similarity=0.685 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
+++..|++.|++++|.+|+.++.+|+.+|++..+||||++|++||||+||++||.++.|.++++|..||.|||.||+.||
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 82 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARHYN 82 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy15468 356 EPGSQIYKDAKALKKLVQTK 375 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~~ 375 (653)
+++|.||.+|..|+++|.++
T Consensus 83 ~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 83 EEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999763
No 18
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.6e-24 Score=193.58 Aligned_cols=102 Identities=30% Similarity=0.615 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy15468 459 SLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNAC 538 (653)
Q Consensus 459 ~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~ 538 (653)
+++.|+.|+++|+++++..| ++++++|.++|++..+|+||++|++||||++|++||++|.|.|+++|.+||+|||.||+
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~-~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETG-RKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCC-CchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 36789999999999998888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHH
Q psy15468 539 KYNEPDSHIYKDALSLQRIVLQT 561 (653)
Q Consensus 539 ~YN~~~S~iy~dA~~L~~~~~~~ 561 (653)
+||+++|.+|.+|..|++.|.++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999765
No 19
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.2e-24 Score=192.76 Aligned_cols=101 Identities=40% Similarity=0.655 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.+.|.+|+++|+++++..|++++++|+.+|++..+|+||++|++||||++|++||++|.|.++++|..||+|||.||+.|
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANARTY 81 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy15468 355 NEPGSQIYKDAKALKKLVQTK 375 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~ 375 (653)
|+++|.+|.+|..|++.|..+
T Consensus 82 n~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 82 NQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999764
No 20
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.8e-24 Score=192.19 Aligned_cols=102 Identities=28% Similarity=0.553 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy15468 458 ASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNA 537 (653)
Q Consensus 458 ~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na 537 (653)
|++++++.+++.|+++++..| ++++.+|+++|++..+|+||++|++||||++|++||+++.|.|+++|..||.|||.||
T Consensus 1 ~~~~~~~~i~~~v~~~~d~~g-~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 79 (104)
T cd05522 1 PYEARIKNILKGLRKERDENG-RLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENA 79 (104)
T ss_pred CHHHHHHHHHHHHHHHhCcCC-CcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHH
Q psy15468 538 CKYNEPDSHIYKDALSLQRIVLQ 560 (653)
Q Consensus 538 ~~YN~~~S~iy~dA~~L~~~~~~ 560 (653)
+.||+++|.+|.+|..|++.|..
T Consensus 80 ~~yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 80 KLYNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999964
No 21
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.91 E-value=5.7e-24 Score=190.17 Aligned_cols=107 Identities=21% Similarity=0.380 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy15468 458 ASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNA 537 (653)
Q Consensus 458 ~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na 537 (653)
.+++.+..|+++|++++|+.| |.+|.+|++||+. .++||.+|++||||++|++||++|.|.++++|..||.+||.||
T Consensus 3 ~vq~~l~~l~~~V~~~~D~~G-r~~s~~f~~LP~~--~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NA 79 (110)
T cd05526 3 LVQELLATLFVSVMNHQDEEG-RCYSDSLAELPEL--AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERA 79 (110)
T ss_pred HHHHHHHHHHHHHHhccCCCC-CCchHHHHHCCCc--ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHH
Confidence 467889999999999999999 9999999999994 5788999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 538 CKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 538 ~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
++||+++|+||.+|..||++|..++.++.+
T Consensus 80 r~yN~~~S~iy~dA~eLq~~f~~~rd~~~~ 109 (110)
T cd05526 80 RRLSRTDSEIYEDAVELQQFFIKIRDELCK 109 (110)
T ss_pred HHhCcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998875
No 22
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=6.3e-24 Score=190.23 Aligned_cols=101 Identities=35% Similarity=0.559 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy15468 459 SLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNAC 538 (653)
Q Consensus 459 ~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~ 538 (653)
+.++|+.+++.|++++++.| ++++.+|..+|++..+||||++|++||||++|++||++ |.|+++|.+|+.|||.||+
T Consensus 2 l~~~~~~l~~~i~~~~~~~g-~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENG-IEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCC-CCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 57889999999999999988 99999999999999999999999999999999999998 9999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHH
Q psy15468 539 KYNEPDSHIYKDALSLQRIVLQTK 562 (653)
Q Consensus 539 ~YN~~~S~iy~dA~~L~~~~~~~~ 562 (653)
.||+++|.+|.+|..|+++|..+.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~ 102 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVI 102 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999997664
No 23
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=5.3e-24 Score=187.88 Aligned_cols=95 Identities=21% Similarity=0.352 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.++|..|++.|+++++ +++|..||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.||+.|
T Consensus 2 ~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05505 2 LQKCEEILSKILKYRF------SWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKY 75 (97)
T ss_pred HHHHHHHHHHHHhCCC------cccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999998876 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy15468 355 NEPGSQIYKDAKALKKLVQTK 375 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~ 375 (653)
|+++|.|+..|..|++.|.+.
T Consensus 76 N~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 76 YENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999764
No 24
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.90 E-value=1.1e-23 Score=188.67 Aligned_cols=101 Identities=30% Similarity=0.601 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.++|+.|++.|+++++++|++++.+|+.+|++..+||||++|++||||++|++||++ |.++++|..|+.|||+||+.|
T Consensus 3 ~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~~y 80 (106)
T cd05521 3 SKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKM 377 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~ 377 (653)
|+++|.+|.+|..|+++|..++.
T Consensus 81 N~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 81 NTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred cCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999987653
No 25
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.90 E-value=8.3e-24 Score=229.81 Aligned_cols=219 Identities=26% Similarity=0.395 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchH
Q psy15468 102 DAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDF 181 (653)
Q Consensus 102 ~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~ 181 (653)
+.+..++..+..+.+.+|+.+..+|+.+|+++.+|+||+||+.||||++|++||++++
T Consensus 145 ~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~---------------------- 202 (371)
T COG5076 145 ADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGR---------------------- 202 (371)
T ss_pred HHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhh----------------------
Confidence 5567788888899999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccCCCcc
Q psy15468 182 IKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASET 261 (653)
Q Consensus 182 ~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 261 (653)
|.++++|..|+.|||+||..||+++|.++.+|..|.+.+....+.+....... ...+. ..
T Consensus 203 -----------Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~--~~~~~-------~~ 262 (371)
T COG5076 203 -----------YKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELEKYFLKLIEEIPEEMLEL--SIKPG-------RE 262 (371)
T ss_pred -----------hhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHHHHHHHHHHhccccchhh--ccCcc-------cc
Confidence 99999999999999999999999999999999999999999888764422211 00000 00
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHH
Q psy15468 262 EDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDME 341 (653)
Q Consensus 262 ~~~~~ss~~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~ 341 (653)
... .+-..++..+ ..+.-+|+|..+++....|+|++.|..++++.+.+.++..+.|...++|.
T Consensus 263 ~~~-----------~~~~~~i~~~------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (371)
T COG5076 263 ERE-----------ERESVLITNS------QAHVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELKLRNNYYRPEETFV 325 (371)
T ss_pred ccc-----------cchhhccccc------ccccccccccccCCcccccchhhhhhcccccccchhhhhcccCCCccccc
Confidence 000 0111112222 23445899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 342 KDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEI 379 (653)
Q Consensus 342 ~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i 379 (653)
.|..++++||..||+...+.+..+..+...+......+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (371)
T COG5076 326 RDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRLI 363 (371)
T ss_pred cccchhhhcccccchhhhhhhhhccchhhhHhhhhhhh
Confidence 99999999999999999999999999988887665443
No 26
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.6e-23 Score=185.97 Aligned_cols=99 Identities=36% Similarity=0.552 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
+.+..|++.|++++|++|++++++|+++|++..+|+||++|++||||++|++||+++.|.++++|..|+.|||.||+.||
T Consensus 4 ~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yn 83 (104)
T cd05522 4 ARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLYN 83 (104)
T ss_pred HHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q psy15468 356 EPGSQIYKDAKALKKLVQT 374 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~ 374 (653)
+++|.+|.+|..|++.|+.
T Consensus 84 ~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 84 ENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999975
No 27
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=4.1e-23 Score=188.52 Aligned_cols=101 Identities=29% Similarity=0.502 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.+.|..|++.|+++.+ +++|+.||+...+||||++|++||||+||++||.+|.|.++++|..||+|||.||+.|
T Consensus 7 ~~~c~~il~~l~~~~~------s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~y 80 (119)
T cd05496 7 KKQCKELVNLMWDCED------SEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSY 80 (119)
T ss_pred HHHHHHHHHHHHhCCc------cccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6889999999999876 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 355 NEP-GSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 355 N~~-~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
|++ +|.||.+|..|+++|++++.++..
T Consensus 81 N~~~~s~i~~~a~~L~~~F~~~~~~l~~ 108 (119)
T cd05496 81 TPNKRSRIYSMTLRLSALFEEHIKKIIS 108 (119)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 985 999999999999999999988754
No 28
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=3.7e-23 Score=182.52 Aligned_cols=95 Identities=21% Similarity=0.364 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCch
Q psy15468 101 SDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPID 180 (653)
Q Consensus 101 ~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d 180 (653)
.+.|..|++.|.+++. ++||+.||++..+||||+||++||||+||++||++|.
T Consensus 2 ~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~~~~--------------------- 54 (97)
T cd05505 2 LQKCEEILSKILKYRF------SWPFREPVTADEAEDYKKVITNPMDLQTMQTKCSCGS--------------------- 54 (97)
T ss_pred HHHHHHHHHHHHhCCC------cccccCCCChhhcccHHHHcCCcCCHHHHHHHHcCCC---------------------
Confidence 4678999999998764 8999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHH
Q psy15468 181 FIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHST 234 (653)
Q Consensus 181 ~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~ 234 (653)
|.++++|..|+.|||+||..||+++|.++..|.+|++.|...
T Consensus 55 ------------Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 55 ------------YSSVQEFLDDMKLVFSNAEKYYENGSYVLSCMRKTEQCCVNL 96 (97)
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998764
No 29
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=5.9e-23 Score=184.51 Aligned_cols=99 Identities=26% Similarity=0.381 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccC--CCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKK--RYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~--~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
...++.|++.|+++.. |++|..||+.. ++||||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 7 ~~~~~~il~~l~~~~~------s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05497 7 QYLLKVVLKALWKHKF------AWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCY 80 (107)
T ss_pred HHHHHHHHHHHHhCCc------CccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3455677888887654 99999999865 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 353 TFNEPGSQIYKDAKALKKLVQTKKMEI 379 (653)
Q Consensus 353 ~yN~~~S~i~~~A~~L~~~~~~~~~~i 379 (653)
.||+++|.|+.+|..|+++|.++++++
T Consensus 81 ~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 81 IYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999988753
No 30
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.89 E-value=4.3e-23 Score=224.19 Aligned_cols=218 Identities=31% Similarity=0.479 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.+.+..++..+....+.+|+.+..+|+.+|++..+|+||++|+.||||.+|++||+.+.|.++++|..|+.|||.||+.|
T Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~y 223 (371)
T COG5076 144 YADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLY 223 (371)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccCCccccCCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhc
Confidence 57788888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCchhhhhcCCCCCCCCCCcccccCCCCCCCch
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLW 434 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~i~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~e~~~~sd~e~~~~~~~~~P~~ 434 (653)
|+++|.||.+|..|++.+...+..++......... .. . . ..+ ..+.
T Consensus 224 N~~~s~v~~~a~~l~~~~~~~i~~~~~~~~~~~~~-----~~---------------~---~---~~~-------~~~~- 269 (371)
T COG5076 224 NGPDSSVYVDAKELEKYFLKLIEEIPEEMLELSIK-----PG---------------R---E---ERE-------ERES- 269 (371)
T ss_pred cCCCcchhhhhHHHHHHHHHHHHhccccchhhccC-----cc---------------c---c---ccc-------cchh-
Confidence 99999999999999999999988876543211000 00 0 0 000 0000
Q ss_pred hhhhhhhccccCCcccccccCCHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHH
Q psy15468 435 QVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASK 514 (653)
Q Consensus 435 ~~~~~ir~~~~~g~~~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~k 514 (653)
.++..+ .. +.-+|+|++++.....|+|++.|..++++++.+.+
T Consensus 270 ------------------------------~~i~~~------~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 312 (371)
T COG5076 270 ------------------------------VLITNS------QA-HVGAWPFLRPVSDEEVPDYYKDIRDPMDLSTKELK 312 (371)
T ss_pred ------------------------------hccccc------cc-ccccccccccCCcccccchhhhhhcccccccchhh
Confidence 000000 11 34478999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy15468 515 LRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKM 563 (653)
Q Consensus 515 l~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~~~~~~~~ 563 (653)
+..+.|...++|+.|..++|.||..||+.....++-+..+..++.....
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (371)
T COG5076 313 LRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTR 361 (371)
T ss_pred hhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHhhhhh
Confidence 9999999999999999999999999999999999999999888866544
No 31
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=9.8e-23 Score=185.40 Aligned_cols=104 Identities=24% Similarity=0.405 Sum_probs=98.6
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q psy15468 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKN 350 (653)
Q Consensus 271 ~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~N 350 (653)
...+...|..|++.|+.+.+ +++|..||+...+|+||++|++||||+||++||++|.|.++++|..||.|||.|
T Consensus 10 ~~~~~~~c~~il~~l~~~~~------s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~N 83 (115)
T cd05504 10 GPLNLSALEQLLVEIVKHKD------SWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSN 83 (115)
T ss_pred CHHHHHHHHHHHHHHHhCCC------chhhcCCCCccccccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999998765 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 351 ACTFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 351 a~~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
|+.||+++|.++.+|..|+++|.++++++.
T Consensus 84 a~~yN~~~s~i~~~A~~l~~~f~~~~~~~~ 113 (115)
T cd05504 84 CFLYNPEHTSVYKAGTRLQRFFIKRCRKLG 113 (115)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999988763
No 32
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.3e-22 Score=182.73 Aligned_cols=102 Identities=24% Similarity=0.422 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHHHhc-cCCCCcccccccccccccC--CCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q psy15468 272 EDEQNQCEDLFNAVMTS-TDADSRPLHEVFQLLPSKK--RYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMT 348 (653)
Q Consensus 272 ~~~~~~~~~ll~~l~~~-~d~~g~~~a~~F~~~p~~~--~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf 348 (653)
++..+.|..+++.|+++ .. |++|..||+.. ++|+||++|++||||+||++||.+|.|.++++|.+|++|||
T Consensus 2 ~~l~~~~~~il~~l~~~~~~------s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~ 75 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPE------SLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMF 75 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcc------cchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34578899999999987 54 99999999875 79999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 349 KNACTFNEPGSQIYKDAKALKKLVQTKKMEI 379 (653)
Q Consensus 349 ~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i 379 (653)
.||+.||+++|.+|.+|..|++.|++.+..+
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 76 DNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765
No 33
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=7.6e-23 Score=183.80 Aligned_cols=96 Identities=21% Similarity=0.362 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhhhhcCCccccccccCCCCC--CCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchH
Q psy15468 104 MQQIYDVIRNFKKEDGALLCDPFIRIPKKR--QEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDF 181 (653)
Q Consensus 104 ~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~--~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~ 181 (653)
++.|++.|..++ .|+||..||+.. .+||||+||++||||+||++||+++.
T Consensus 10 ~~~il~~l~~~~------~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~---------------------- 61 (107)
T cd05497 10 LKVVLKALWKHK------FAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNY---------------------- 61 (107)
T ss_pred HHHHHHHHHhCC------cCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCC----------------------
Confidence 356677776654 499999999865 79999999999999999999999999
Q ss_pred HHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhc
Q psy15468 182 IKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKL 238 (653)
Q Consensus 182 ~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~ 238 (653)
|.++++|..|++|||.||..||+++|+++.+|..|.+.|.+.+.++
T Consensus 62 -----------Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 62 -----------YWSASECIQDFNTMFTNCYIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999887654
No 34
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=7.9e-23 Score=180.73 Aligned_cols=96 Identities=25% Similarity=0.469 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
...|..|++.|+.+.. +++|+.||+...+|+||++|++||||+||++||++|.|.++++|..|++|||.||+.|
T Consensus 2 ~~~c~~il~~l~~~~~------~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05503 2 LALCETILDEMEAHED------AWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETF 75 (97)
T ss_pred HHHHHHHHHHHHcCCC------chhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999998754 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKK 376 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~ 376 (653)
|+++|.++.+|..|++.|+++|
T Consensus 76 N~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 76 NEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 35
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.6e-22 Score=184.65 Aligned_cols=104 Identities=22% Similarity=0.334 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~N 536 (653)
..|++.|..|++.|.+ +..+++|..||+...+||||++|++||||+||++||.+|.|.++++|.+||+|||.|
T Consensus 4 ~~w~~~c~~il~~l~~-------~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~N 76 (119)
T cd05496 4 SDWKKQCKELVNLMWD-------CEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSN 76 (119)
T ss_pred HHHHHHHHHHHHHHHh-------CCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 3588899999999987 456899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC-CCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 537 ACKYNEP-DSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 537 a~~YN~~-~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
|++||++ +|.||.+|..|+++|++.+.+|..
T Consensus 77 a~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~ 108 (119)
T cd05496 77 SKSYTPNKRSRIYSMTLRLSALFEEHIKKIIS 108 (119)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999985 999999999999999999888754
No 36
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.6e-22 Score=180.37 Aligned_cols=99 Identities=28% Similarity=0.545 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccC--CCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKK--RYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~--~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
.+.|..|++.|++.++ +.++++|+.||+.. .+|+||++|++||||++|++||+++.|.++++|..|++|||.||+
T Consensus 2 ~~~c~~Il~~l~~~~~---~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~ 78 (102)
T cd05499 2 LKFCEEVLKELMKPKH---SAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCY 78 (102)
T ss_pred hHHHHHHHHHHHcccC---CcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999998753 67899999998877 999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q psy15468 353 TFNEPGSQIYKDAKALKKLVQTKK 376 (653)
Q Consensus 353 ~yN~~~S~i~~~A~~L~~~~~~~~ 376 (653)
.||+++|.++.+|..|++.|+++|
T Consensus 79 ~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 79 TFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 37
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=1.8e-22 Score=183.62 Aligned_cols=101 Identities=26% Similarity=0.412 Sum_probs=95.6
Q ss_pred ChHHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q psy15468 99 DPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNP 178 (653)
Q Consensus 99 ~~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P 178 (653)
-....|..|++.|..++. +++|+.||+...+||||++|++||||+||++||++|.
T Consensus 12 ~~~~~c~~il~~l~~~~~------s~~F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~~~~------------------- 66 (115)
T cd05504 12 LNLSALEQLLVEIVKHKD------SWPFLRPVSKIEVPDYYDIIKKPMDLGTIKEKLNMGE------------------- 66 (115)
T ss_pred HHHHHHHHHHHHHHhCCC------chhhcCCCCccccccHHHHhcCcccHHHHHHHHccCC-------------------
Confidence 356889999999998753 8999999999999999999999999999999999999
Q ss_pred chHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhc
Q psy15468 179 IDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKL 238 (653)
Q Consensus 179 ~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~ 238 (653)
|.++++|..|+.|||+||..||+++|+++++|..|++.|.+.++++
T Consensus 67 --------------Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 67 --------------YKLAEEFLSDIQLVFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998876
No 38
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=4.5e-22 Score=179.62 Aligned_cols=103 Identities=30% Similarity=0.471 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhC---CCCCCHHHHHHHHHHHH
Q psy15468 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQD---GKYASLGDMEKDLILMT 348 (653)
Q Consensus 272 ~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~---~~Y~s~~ef~~Dv~Lmf 348 (653)
..+.+.|+.|+..|+++. .+++|..||++ .+|+||++|++||||+||++||++ |.|.++++|.+||+|||
T Consensus 3 ~~~~~~c~~il~~l~~~~------~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~ 75 (109)
T cd05502 3 PIDQRKCERLLLELYCHE------LSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMF 75 (109)
T ss_pred HHHHHHHHHHHHHHHhCC------CChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 467899999999999874 49999999998 899999999999999999999998 69999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 349 KNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 349 ~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
+||+.||+++|.++.+|..|++.|++++.++.+
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 76 KNCYKFNEEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999987653
No 39
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.1e-22 Score=178.00 Aligned_cols=96 Identities=24% Similarity=0.512 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCch
Q psy15468 101 SDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPID 180 (653)
Q Consensus 101 ~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d 180 (653)
+..|..|++.|..+. .+++|+.||+...+||||++|++||||+||++||++|.
T Consensus 2 ~~~c~~il~~l~~~~------~~~~F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~~~~--------------------- 54 (97)
T cd05503 2 LALCETILDEMEAHE------DAWPFLEPVNTKLVPGYRKIIKKPMDFSTIREKLESGQ--------------------- 54 (97)
T ss_pred HHHHHHHHHHHHcCC------CchhhcCCCCccccCCHHHHhCCCCCHHHHHHHHccCC---------------------
Confidence 467999999999864 38999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHh
Q psy15468 181 FIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTR 235 (653)
Q Consensus 181 ~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~ 235 (653)
|.++.+|..|+.|||.||..||+++|.++++|..|.+.|++.|
T Consensus 55 ------------Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 55 ------------YKTLEEFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998865
No 40
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.7e-22 Score=177.55 Aligned_cols=80 Identities=19% Similarity=0.419 Sum_probs=77.4
Q ss_pred cccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHHHhhhcccCcCCCHHHHHH
Q psy15468 122 LCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQA 201 (653)
Q Consensus 122 ~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~ 201 (653)
.|+||..||+...+||||++|++||||+||++||++|. |.++++|.+
T Consensus 19 ~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~---------------------------------Y~s~~ef~~ 65 (99)
T cd05508 19 GAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKA---------------------------------YGSTDAFLA 65 (99)
T ss_pred CcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCC---------------------------------CCCHHHHHH
Confidence 39999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhhhccccCCCHHHHHHHHHHHHHHHH
Q psy15468 202 DIELLVKNAKTFYKRNSQEHRDAQELMELFHST 234 (653)
Q Consensus 202 D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~ 234 (653)
|+.|||+||..||+++|.++.+|..|.+.|...
T Consensus 66 Dv~LI~~Na~~YN~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 66 DAKWILHNAIIYNGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988764
No 41
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=3.6e-22 Score=178.72 Aligned_cols=98 Identities=22% Similarity=0.389 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.+.|..+++.|.+++. +++|.+||+...+|+||++|++||||+||++||++|.|.++++|.+||.|||.||..|
T Consensus 5 ~~~~~~il~~l~~~~~------a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 78 (104)
T cd05507 5 KKAILLVYRTLASHRY------ASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMY 78 (104)
T ss_pred HHHHHHHHHHHHcCCC------CHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5779999999998865 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKME 378 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~ 378 (653)
|+++|.++.+|..|++.+.+.+..
T Consensus 79 N~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 79 NSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999887654
No 42
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.2e-22 Score=179.61 Aligned_cols=103 Identities=27% Similarity=0.396 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 273 DEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 273 ~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
+..+.|..|++.|++++ ..+++|+.||++..+|+||++|++||||+||++||++|.|.++++|.+|++|||.||+
T Consensus 7 ~~~~~~~~il~~l~~~~-----~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~ 81 (112)
T cd05510 7 EFYESLDKVLNELKTYT-----EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCL 81 (112)
T ss_pred HHHHHHHHHHHHHHhcC-----ccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 34688999999999983 2399999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCC-HHHHHHHHHHHHHHHHHHhhh
Q psy15468 353 TFNEPGS-QIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 353 ~yN~~~S-~i~~~A~~L~~~~~~~~~~i~ 380 (653)
.||+++| .++.+|..|++.++..+..++
T Consensus 82 ~yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 82 LYNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999876 678999999999999988775
No 43
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.1e-22 Score=178.80 Aligned_cols=100 Identities=23% Similarity=0.414 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhhhhcCCccccccccCCCCC--CCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCc
Q psy15468 102 DAMQQIYDVIRNFKKEDGALLCDPFIRIPKKR--QEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPI 179 (653)
Q Consensus 102 ~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~--~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~ 179 (653)
..|..+++.+.++. . .|++|+.||+.. .+||||+||++||||+||++||++|.
T Consensus 6 ~~~~~il~~l~~~~--~---~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~-------------------- 60 (108)
T cd05495 6 QALMPTLEKLYKQD--P---ESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQ-------------------- 60 (108)
T ss_pred HHHHHHHHHHHHcC--c---ccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCC--------------------
Confidence 34455555555541 2 399999999865 79999999999999999999999999
Q ss_pred hHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhcc
Q psy15468 180 DFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLL 239 (653)
Q Consensus 180 d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~ 239 (653)
|.++.+|..|++|||+||..||+++|.++++|.+|.+.|.+.++.++
T Consensus 61 -------------Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 61 -------------YQDPWQYVDDVWLMFDNAWLYNRKTSRVYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999877653
No 44
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=7.3e-22 Score=174.80 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhh
Q psy15468 274 EQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACT 353 (653)
Q Consensus 274 ~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~ 353 (653)
+.+.|+.|+..|+.+.+ +++|...| ..+||||++|++||||+||++||.+|.|.++++|.+||+|||.||++
T Consensus 3 ~l~~ce~il~~l~~~~~------s~~f~~~p--~~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~ 74 (102)
T cd05501 3 ELLKCEFLLLKVYCMSK------SGFFISKP--YYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKL 74 (102)
T ss_pred HHHHHHHHHHHHHhCcc------cccccCCC--CCCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56789999999999876 88897655 48999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 354 FNEPGSQIYKDAKALKKLVQTKKMEI 379 (653)
Q Consensus 354 yN~~~S~i~~~A~~L~~~~~~~~~~i 379 (653)
||+++ .++.+|..|++.|+++++++
T Consensus 75 yN~~~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 75 FYKDD-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred HcCCC-HHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999998865
No 45
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=5.2e-22 Score=175.73 Aligned_cols=94 Identities=20% Similarity=0.325 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
...|..+++.+. + +.+++|.+||+...+||||++|++||||+||++||++|.|.++++|.+|++|||.||..|
T Consensus 5 ~~~L~~~~~~~~-~------~~s~~F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~Y 77 (99)
T cd05508 5 SKLLKFALERMK-Q------PGAEPFLKPVDLEQFPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIY 77 (99)
T ss_pred HHHHHHHHHHHh-C------cCcchhcCCCChhhCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 345566666665 4 349999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy15468 355 NEPGSQIYKDAKALKKLVQTK 375 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~ 375 (653)
|+++|.++.+|..|.+.|...
T Consensus 78 N~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 78 NGGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999988753
No 46
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=6.1e-22 Score=176.39 Aligned_cols=99 Identities=29% Similarity=0.503 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
...|..|++.|.++.. +++|..||+...+|+||++|++||||+||++||+++.|.++++|..||+|||.||+.|
T Consensus 3 ~~~~~~il~~l~~~~~------a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 76 (101)
T cd05509 3 YTQLKKVLDSLKNHKS------AWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLY 76 (101)
T ss_pred HHHHHHHHHHHHhCCC------chhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4689999999999876 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKMEI 379 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~i 379 (653)
|+++|.++.+|..|++.|++.++++
T Consensus 77 N~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 77 NGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999988753
No 47
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=8.8e-22 Score=176.17 Aligned_cols=101 Identities=25% Similarity=0.439 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy15468 458 ASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNA 537 (653)
Q Consensus 458 ~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na 537 (653)
.|++.|..+++.|.+ ++.+++|.++|+...+|+||++|++||||++|++||++|.|.|+++|.+|+.|||.||
T Consensus 3 ~~~~~~~~il~~l~~-------~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 75 (104)
T cd05507 3 AWKKAILLVYRTLAS-------HRYASVFLKPVTEDIAPGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNA 75 (104)
T ss_pred HHHHHHHHHHHHHHc-------CCCCHhhcCCCCccccCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 578889999999986 5679999999999899999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 538 CKYNEPDSHIYKDALSLQRIVLQTKMHL 565 (653)
Q Consensus 538 ~~YN~~~S~iy~dA~~L~~~~~~~~~eL 565 (653)
..||+++|.+|.+|..|++.+.+..+++
T Consensus 76 ~~yN~~~s~v~~~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 76 IMYNSSDHDVYLMAVEMQREVMSQIQQL 103 (104)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999998776643
No 48
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=8.3e-22 Score=175.82 Aligned_cols=99 Identities=20% Similarity=0.411 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccC--CCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKK--RYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~--~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
.+.|..|++.|+++ .|++++++|+.|++.. .+|+||++|++||||++|++||++|.|.++++|..||+|||.||+
T Consensus 2 ~~~c~~il~~l~~~---~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~ 78 (102)
T cd05498 2 LKFCSGILKELFSK---KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCY 78 (102)
T ss_pred hhHHHHHHHHHHhC---CCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999997 4578999999998754 699999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q psy15468 353 TFNEPGSQIYKDAKALKKLVQTKK 376 (653)
Q Consensus 353 ~yN~~~S~i~~~A~~L~~~~~~~~ 376 (653)
.||+++|.++.+|..|++.|+++|
T Consensus 79 ~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 79 KYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 49
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=1.6e-21 Score=174.35 Aligned_cols=104 Identities=24% Similarity=0.401 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
+..+..|+++|++++|++||.++.+|.++|+ ..|+||.+|++||||.+|++||++|.|+++++|..||.+||.||++|
T Consensus 5 q~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 5 QELLATLFVSVMNHQDEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHHHHHHHhccCCCCCCchHHHHHCCC--cccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999 45788999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
|.+||.||.+|..|+++|.....++.
T Consensus 83 N~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 83 SRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988766653
No 50
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.5e-21 Score=173.83 Aligned_cols=101 Identities=31% Similarity=0.562 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy15468 458 ASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNA 537 (653)
Q Consensus 458 ~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na 537 (653)
|+.++|..+++.|.+ +..+++|.++|+...+|+||++|++||||++|++||+++.|.|+++|.+||.|||.||
T Consensus 1 ~~~~~~~~il~~l~~-------~~~a~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na 73 (101)
T cd05509 1 PLYTQLKKVLDSLKN-------HKSAWPFLEPVDKEEAPDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNC 73 (101)
T ss_pred ChHHHHHHHHHHHHh-------CCCchhhcCCCChhhcCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 356788899999987 4568999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 538 CKYNEPDSHIYKDALSLQRIVLQTKMHL 565 (653)
Q Consensus 538 ~~YN~~~S~iy~dA~~L~~~~~~~~~eL 565 (653)
+.||+++|.++.+|..|++.|++...+|
T Consensus 74 ~~yN~~~s~~~~~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 74 RLYNGPDTEYYKCANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999887764
No 51
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=2.4e-21 Score=175.30 Aligned_cols=104 Identities=24% Similarity=0.381 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~N 536 (653)
..+.+.|..+++.|+++. +.+++|..+|++..+||||++|++||||++|++||++|+|+|+++|.+|+.|||.|
T Consensus 6 ~~~~~~~~~il~~l~~~~------~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N 79 (112)
T cd05510 6 EEFYESLDKVLNELKTYT------EHSTPFLTKVSKREAPDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKN 79 (112)
T ss_pred HHHHHHHHHHHHHHHhcC------ccccchhcCCChhhcCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 467888999999998753 45899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCC-HHHHHHHHHHHHHHHHHHhhc
Q psy15468 537 ACKYNEPDS-HIYKDALSLQRIVLQTKMHLR 566 (653)
Q Consensus 537 a~~YN~~~S-~iy~dA~~L~~~~~~~~~eL~ 566 (653)
|+.||+++| .+++.|..|++.+......|+
T Consensus 80 ~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 80 CLLYNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999877 577999999999988877765
No 52
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=1.8e-21 Score=173.75 Aligned_cols=98 Identities=19% Similarity=0.365 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhcCCCCCcccccccccCcCCC--CCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy15468 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRH--DYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNAC 538 (653)
Q Consensus 461 ~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~--~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~ 538 (653)
+.|..|++.|.+... +.++++|+.+|+.. .+|+||++|++||||++|++||+++.|+|+++|.+||+|||.||+
T Consensus 3 ~~c~~Il~~l~~~~~----~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~ 78 (102)
T cd05499 3 KFCEEVLKELMKPKH----SAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCY 78 (102)
T ss_pred HHHHHHHHHHHcccC----CcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 467778887776433 67899999998877 899999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHH
Q psy15468 539 KYNEPDSHIYKDALSLQRIVLQTK 562 (653)
Q Consensus 539 ~YN~~~S~iy~dA~~L~~~~~~~~ 562 (653)
.||+++|.++.+|..|++.|+++|
T Consensus 79 ~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 79 TFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998764
No 53
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.3e-21 Score=175.65 Aligned_cols=100 Identities=30% Similarity=0.474 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
..++.|++.|+++.. +++|+.||++..+|+||++|++||||++|++||+++.|.++++|.+|++|||.||..||
T Consensus 3 ~~l~~ii~~l~~~~~------s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN 76 (112)
T cd05511 3 FILDEIVNELKNLPD------SWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYN 76 (112)
T ss_pred HHHHHHHHHHHhCCC------chhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 457889999998765 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 356 EPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
+++|.++.+|..|.+.|...+.+++.
T Consensus 77 ~~~s~i~~~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 77 GPDSVYTKKAKEMLELAEELLAEREE 102 (112)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999988864
No 54
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=1.9e-21 Score=171.82 Aligned_cols=92 Identities=21% Similarity=0.422 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchH
Q psy15468 102 DAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDF 181 (653)
Q Consensus 102 ~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~ 181 (653)
.+|..|++.|..+.. +++|..||+...+||||++|++||||+||++||+++.
T Consensus 4 ~~l~~il~~l~~~~~------~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~---------------------- 55 (98)
T cd05513 4 KALEQLIRQLQRKDP------HGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNND---------------------- 55 (98)
T ss_pred HHHHHHHHHHHcCCc------cccccCcCCccccccHHHHHcCccCHHHHHHHHhCCC----------------------
Confidence 567778888876543 8999999999999999999999999999999999999
Q ss_pred HHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHH
Q psy15468 182 IKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFH 232 (653)
Q Consensus 182 ~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~ 232 (653)
|.++++|..|++|||.||..||+++|.++++|.+|++.-.
T Consensus 56 -----------Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~ 95 (98)
T cd05513 56 -----------YQSIEEFKDDFKLMCENAMKYNKPDTIYYKAAKKLLHSGM 95 (98)
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999986544
No 55
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.3e-21 Score=171.28 Aligned_cols=92 Identities=28% Similarity=0.485 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
.+.|..|++.|+.+.. +++|+.||+...+|+||++|++||||+||++||+++.|.++++|.+||+|||.||..|
T Consensus 3 ~~~l~~il~~l~~~~~------~~~F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 76 (98)
T cd05513 3 QKALEQLIRQLQRKDP------HGFFAFPVTDFIAPGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKY 76 (98)
T ss_pred HHHHHHHHHHHHcCCc------cccccCcCCccccccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678899999998755 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy15468 355 NEPGSQIYKDAKALKKLV 372 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~ 372 (653)
|+++|.+|++|..|.+.-
T Consensus 77 N~~~s~~~~~A~~L~~~~ 94 (98)
T cd05513 77 NKPDTIYYKAAKKLLHSG 94 (98)
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999997643
No 56
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.9e-21 Score=171.42 Aligned_cols=96 Identities=30% Similarity=0.530 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccC--CCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKK--RYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~--~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
.+.|..|++.|++++. +++|..|++.. .+|+||++|++||||+||++||+++.|.++++|..|+++||.||.
T Consensus 2 ~~~c~~il~~l~~~~~------~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~ 75 (99)
T cd05506 2 MKQCGTLLRKLMKHKW------GWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAM 75 (99)
T ss_pred HHHHHHHHHHHHhCCC------CccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4689999999998765 89999998754 799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q psy15468 353 TFNEPGSQIYKDAKALKKLVQTKK 376 (653)
Q Consensus 353 ~yN~~~S~i~~~A~~L~~~~~~~~ 376 (653)
.||+++|.++.+|..|++.|+++|
T Consensus 76 ~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 76 RYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998865
No 57
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=4.1e-21 Score=171.68 Aligned_cols=98 Identities=23% Similarity=0.386 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHHhccCCCCccccccccccccc--CCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q psy15468 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSK--KRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTK 349 (653)
Q Consensus 272 ~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~--~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~ 349 (653)
+.+.+.|..+++.|+++.. +++|..||+. ..+|+||++|++||||++|++||++|.|.++++|..|+++||.
T Consensus 3 ~~~~~~~~~ii~~l~~~~~------a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 76 (103)
T cd05500 3 KHQHKFLLSSIRSLKRLKD------ARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVD 76 (103)
T ss_pred HHHHHHHHHHHHHHHcCCC------ChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4567899999999998866 9999999885 4899999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHH
Q psy15468 350 NACTFNEPGSQIYKDAKALKKLVQTK 375 (653)
Q Consensus 350 Na~~yN~~~S~i~~~A~~L~~~~~~~ 375 (653)
||+.||+++|.++.+|..|++.|++.
T Consensus 77 Na~~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 77 NCLTFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999864
No 58
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=2.7e-21 Score=175.22 Aligned_cols=97 Identities=25% Similarity=0.461 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHH
Q psy15468 103 AMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFI 182 (653)
Q Consensus 103 ~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~ 182 (653)
+++.|++.|+.++ .|++|+.||++..+|+||++|++||||+||++||+++.
T Consensus 4 ~l~~ii~~l~~~~------~s~~F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~~~~----------------------- 54 (112)
T cd05511 4 ILDEIVNELKNLP------DSWPFHTPVNKKKVPDYYKIIKRPMDLQTIRKKISKHK----------------------- 54 (112)
T ss_pred HHHHHHHHHHhCC------CchhhcCCCChhhcccHHHHhcCCCCHHHHHHHHhcCC-----------------------
Confidence 4677888887765 39999999999999999999999999999999999999
Q ss_pred HHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhc
Q psy15468 183 KIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKL 238 (653)
Q Consensus 183 ~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~ 238 (653)
|.++++|.+|+.|||.||..||+++|.++++|..|++.|...+.++
T Consensus 55 ----------Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 55 ----------YQSREEFLEDIELIVDNSVLYNGPDSVYTKKAKEMLELAEELLAER 100 (112)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988876
No 59
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.85 E-value=3.7e-21 Score=170.21 Aligned_cols=90 Identities=22% Similarity=0.447 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
..|+.+++.|+.+.. +++|..||+...+|+||++|++||||+||++||+++.|.++++|..||+|||.||..||
T Consensus 4 ~~l~~il~~l~~~~~------~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 77 (98)
T cd05512 4 VLLRKTLDQLQEKDT------AEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYN 77 (98)
T ss_pred HHHHHHHHHHHhCCC------chhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 568899999998755 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy15468 356 EPGSQIYKDAKALKKL 371 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~ 371 (653)
+++|.+|++|..|++.
T Consensus 78 ~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 78 AKDTIFYRAAVRLRDQ 93 (98)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999875
No 60
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.84 E-value=6.3e-21 Score=172.61 Aligned_cols=100 Identities=23% Similarity=0.376 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
...|..+++.|+.+.. +++|.+||+...+||||++|++||||+||++||+++.|.++++|.+|++|||.||+.|
T Consensus 5 r~~L~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 78 (112)
T cd05528 5 RLFLRDVLKRLASDKR------FNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEY 78 (112)
T ss_pred HHHHHHHHHHHHhCCC------chhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 4567889999998765 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC----CCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 355 NEP----GSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 355 N~~----~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
|++ ||.|+.+|..|++.|.+++.+..
T Consensus 79 N~~~s~~~s~i~~~A~~L~~~~~~~~~~~~ 108 (112)
T cd05528 79 NPDRDPADKLIRSRACELRDEVHAMIEAEL 108 (112)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHhcC
Confidence 999 47999999999999999887654
No 61
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=5.6e-21 Score=169.17 Aligned_cols=97 Identities=20% Similarity=0.299 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCch
Q psy15468 101 SDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPID 180 (653)
Q Consensus 101 ~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d 180 (653)
+.-|+.|+..|..+.+ +++|..+| ..+||||+||++||||+||++||++|.
T Consensus 4 l~~ce~il~~l~~~~~------s~~f~~~p--~~~pdY~~iIk~PMDL~tI~~kL~~~~--------------------- 54 (102)
T cd05501 4 LLKCEFLLLKVYCMSK------SGFFISKP--YYIRDYCQGIKEPMWLNKVKERLNERV--------------------- 54 (102)
T ss_pred HHHHHHHHHHHHhCcc------cccccCCC--CCCCchHHHcCCCCCHHHHHHHHcCCC---------------------
Confidence 4569999999988765 88997755 499999999999999999999999999
Q ss_pred HHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhcc
Q psy15468 181 FIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLL 239 (653)
Q Consensus 181 ~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~ 239 (653)
|.++++|.+||+|||+||..||+++ +++++|..|.+.|.+.+.+..
T Consensus 55 ------------Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 55 ------------YHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 999999999999999887654
No 62
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=4.2e-21 Score=169.82 Aligned_cols=93 Identities=26% Similarity=0.500 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy15468 458 ASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNA 537 (653)
Q Consensus 458 ~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na 537 (653)
|+...|+.+++.|++ +..+++|..+++...+|+||++|++||||++|++||+++.|.|+++|..||+|||.||
T Consensus 1 p~~~~l~~il~~l~~-------~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 73 (98)
T cd05512 1 PLEVLLRKTLDQLQE-------KDTAEIFSEPVDLSEVPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNC 73 (98)
T ss_pred CHHHHHHHHHHHHHh-------CCCchhhcCCCCccccCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 456778888998886 5678999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHH
Q psy15468 538 CKYNEPDSHIYKDALSLQRI 557 (653)
Q Consensus 538 ~~YN~~~S~iy~dA~~L~~~ 557 (653)
+.||+++|.+|++|..|++.
T Consensus 74 ~~yN~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 74 LAYNAKDTIFYRAAVRLRDQ 93 (98)
T ss_pred HHHCCCCCHHHHHHHHHHHh
Confidence 99999999999999999874
No 63
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1.4e-20 Score=169.98 Aligned_cols=102 Identities=28% Similarity=0.440 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhc---CCCCCHHHHHHHHHHHH
Q psy15468 458 ASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRY---NQYEHLDEMVADFIQMF 534 (653)
Q Consensus 458 ~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~---~~Y~s~~ef~~D~~Lmf 534 (653)
..+++|..|+..|.+ +..+++|..||+. .+|+||++|++||||++|++||++ |.|+++++|.+||+|||
T Consensus 4 ~~~~~c~~il~~l~~-------~~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~ 75 (109)
T cd05502 4 IDQRKCERLLLELYC-------HELSLPFHEPVSP-SVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMF 75 (109)
T ss_pred HHHHHHHHHHHHHHh-------CCCChhhcCCCCC-CCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH
Confidence 346778888888876 4679999999998 899999999999999999999998 69999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 535 DNACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 535 ~Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
.||+.||+++|.++.+|..|++.|++.+.++.+
T Consensus 76 ~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p 108 (109)
T cd05502 76 KNCYKFNEEDSEVAQAGKELELFFEEQLKEILP 108 (109)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCc
Confidence 999999999999999999999999999887754
No 64
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1e-20 Score=168.82 Aligned_cols=99 Identities=26% Similarity=0.391 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccccccccCcCCC--CCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy15468 460 LQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRH--DYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNA 537 (653)
Q Consensus 460 ~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~--~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na 537 (653)
.+.|..|++.|.+. .+ ++++++|.++++.. .+|+||++|++||||++|++||++|.|.|+++|..||+|||.||
T Consensus 2 ~~~c~~il~~l~~~---~~-~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na 77 (102)
T cd05498 2 LKFCSGILKELFSK---KH-KAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNC 77 (102)
T ss_pred hhHHHHHHHHHHhC---CC-ccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 45678888888764 33 68899999987654 69999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHH
Q psy15468 538 CKYNEPDSHIYKDALSLQRIVLQTK 562 (653)
Q Consensus 538 ~~YN~~~S~iy~dA~~L~~~~~~~~ 562 (653)
+.||+++|.++.+|..|++.|+++|
T Consensus 78 ~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 78 YKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 65
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.84 E-value=8.3e-21 Score=171.84 Aligned_cols=100 Identities=26% Similarity=0.404 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchH
Q psy15468 102 DAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDF 181 (653)
Q Consensus 102 ~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~ 181 (653)
-+|..|++.|.+++. +++|.+||+...+||||++|++||||+||++||+++.
T Consensus 6 ~~L~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~~~~---------------------- 57 (112)
T cd05528 6 LFLRDVLKRLASDKR------FNAFTKPVDEEEVPDYYEIIKQPMDLQTILQKLDTHQ---------------------- 57 (112)
T ss_pred HHHHHHHHHHHhCCC------chhhcCCCCccccCcHHHHHcCCCCHHHHHHHHcCCC----------------------
Confidence 456778888887754 9999999999999999999999999999999999999
Q ss_pred HHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCC----CHHHHHHHHHHHHHHHHhhhccC
Q psy15468 182 IKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRN----SQEHRDAQELMELFHSTRNKLLN 240 (653)
Q Consensus 182 ~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~----s~~~~~a~~l~~~~~~~~~~~~~ 240 (653)
|.++.+|..|+.|||+||..||+++ |.++.+|..|++.|.+.+.+.+.
T Consensus 58 -----------Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 58 -----------YLTAKDFLKDIDLIVTNALEYNPDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred -----------cCCHHHHHHHHHHHHHHHHHHCCCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999995 68999999999999998876643
No 66
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=1.3e-20 Score=174.60 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhhhhhcCCccccccccCCCCC-CCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCc
Q psy15468 101 SDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKR-QEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPI 179 (653)
Q Consensus 101 ~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~-~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~ 179 (653)
.+.+..++..+..+.+..+...+++|..||+.. .+|+||++|++||||+||++||+++.
T Consensus 23 ~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~-------------------- 82 (128)
T cd05529 23 DEERERLISGLDKLLLSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRY-------------------- 82 (128)
T ss_pred HHHHHHHHHHHHHHHhcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCC--------------------
Confidence 466778888888887667788999999999999 99999999999999999999999999
Q ss_pred hHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhh
Q psy15468 180 DFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRN 236 (653)
Q Consensus 180 d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~ 236 (653)
|.++++|..|++|||.||..||+++|.++..|.+|.+.|.+.+.
T Consensus 83 -------------Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 83 -------------YRSLEALRHDVRLILSNAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999988654
No 67
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=1e-20 Score=167.87 Aligned_cols=95 Identities=22% Similarity=0.369 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhhhhcCCccccccccCCCCC--CCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCc
Q psy15468 102 DAMQQIYDVIRNFKKEDGALLCDPFIRIPKKR--QEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPI 179 (653)
Q Consensus 102 ~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~--~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~ 179 (653)
..|..|++.|..++. +++|..||+.. .+|+||++|++||||+||++||+++.
T Consensus 3 ~~c~~il~~l~~~~~------~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~-------------------- 56 (99)
T cd05506 3 KQCGTLLRKLMKHKW------GWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGE-------------------- 56 (99)
T ss_pred HHHHHHHHHHHhCCC------CccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCC--------------------
Confidence 568899999987754 89999999754 79999999999999999999999999
Q ss_pred hHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHh
Q psy15468 180 DFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTR 235 (653)
Q Consensus 180 d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~ 235 (653)
|.++++|..|+.+||.||..||+++|.++++|..|...|++.|
T Consensus 57 -------------Y~s~~ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 57 -------------YSSPEEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998865
No 68
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.83 E-value=2.7e-20 Score=172.54 Aligned_cols=100 Identities=30% Similarity=0.464 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccC-CCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKK-RYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACT 353 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~-~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~ 353 (653)
...|..++..|+ +..++..+++|..||+.. .+|+||++|++||||+||++||+++.|.++++|..||+|||.||+.
T Consensus 26 ~~~i~~~l~~l~---~~~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~ 102 (128)
T cd05529 26 RERLISGLDKLL---LSLQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNAET 102 (128)
T ss_pred HHHHHHHHHHHH---hcccCcccccccCCCCccccCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 444455555554 335788899999999999 9999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHH
Q psy15468 354 FNEPGSQIYKDAKALKKLVQTKKM 377 (653)
Q Consensus 354 yN~~~S~i~~~A~~L~~~~~~~~~ 377 (653)
||+++|.++.+|..|+++|...+.
T Consensus 103 yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 103 FNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987764
No 69
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.9e-20 Score=166.15 Aligned_cols=95 Identities=23% Similarity=0.433 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhhhhcCCccccccccCCCC--CCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q psy15468 101 SDAMQQIYDVIRNFKKEDGALLCDPFIRIPKK--RQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNP 178 (653)
Q Consensus 101 ~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~--~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P 178 (653)
...|..+++.|.+++. |++|..||+. ..+||||++|++||||+||++||+++.
T Consensus 6 ~~~~~~ii~~l~~~~~------a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~------------------- 60 (103)
T cd05500 6 HKFLLSSIRSLKRLKD------ARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNV------------------- 60 (103)
T ss_pred HHHHHHHHHHHHcCCC------ChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCC-------------------
Confidence 4567777777776543 9999999984 589999999999999999999999999
Q ss_pred chHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHH
Q psy15468 179 IDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHST 234 (653)
Q Consensus 179 ~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~ 234 (653)
|.++.+|..|++|||+||..||+++|.++.+|..|++.|++.
T Consensus 61 --------------Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 61 --------------YTSVEEFTADFNLMVDNCLTFNGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999874
No 70
>smart00297 BROMO bromo domain.
Probab=99.81 E-value=6.6e-20 Score=164.39 Aligned_cols=103 Identities=36% Similarity=0.638 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy15468 460 LQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACK 539 (653)
Q Consensus 460 ~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~ 539 (653)
+++|+.++..|.+.... ++++++|..+|++..+|+||++|++||||.+|++||++|.|.|+++|.+||.+||.||..
T Consensus 5 ~~~~~~~~~~i~~~~~~---~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 5 QKKLQSLLKAVLDKLDS---HRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKT 81 (107)
T ss_pred HHHHHHHHHHHHHHHHh---CccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34444555444444332 578999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 540 YNEPDSHIYKDALSLQRIVLQTKMHL 565 (653)
Q Consensus 540 YN~~~S~iy~dA~~L~~~~~~~~~eL 565 (653)
||+++|.++..|..|++.|.+.+.++
T Consensus 82 ~n~~~s~~~~~a~~l~~~f~~~~~~~ 107 (107)
T smart00297 82 YNGPDSEVYKDAKKLEKFFEKKLREL 107 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999887753
No 71
>smart00297 BROMO bromo domain.
Probab=99.81 E-value=7.3e-20 Score=164.09 Aligned_cols=101 Identities=40% Similarity=0.654 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
+.|..++..|++... .++++++|..||++..+|+||++|++||||++|++||++|.|.++++|..||.+||.||..||
T Consensus 6 ~~~~~~~~~i~~~~~--~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLD--SHRLSWPFLKPVDRKEAPDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHH--hCccchhhccCCChhhccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 445555555554433 246799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Q psy15468 356 EPGSQIYKDAKALKKLVQTKKME 378 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~~~~~ 378 (653)
+++|.++.+|..|.+.|.+.+++
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998865
No 72
>KOG1827|consensus
Probab=99.80 E-value=6.5e-20 Score=204.18 Aligned_cols=227 Identities=28% Similarity=0.441 Sum_probs=174.9
Q ss_pred HHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCchhhhhcCCCCCCCCCC
Q psy15468 341 EKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESED 420 (653)
Q Consensus 341 ~~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~e~~~~sd 420 (653)
..|+.||.+||..||.+.+.++++|..|++.-......+. .+
T Consensus 3 ~~df~l~~e~~~~~~~p~s~p~k~~~~~~~~~~~~k~~~~--------------------------------------~~ 44 (629)
T KOG1827|consen 3 VADFPLMTENACSDNEPDSLPGKDAKNLQKTPLHDKTLMG--------------------------------------RD 44 (629)
T ss_pred hhhhhHHhhccccccCCccccccCcchhhhchhhhhcccC--------------------------------------CC
Confidence 5799999999999999999999999988765433220000 00
Q ss_pred cccccCCCCCCCchhhhhhhhccccCCcccccccCCHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccc
Q psy15468 421 DEEIDQEDPNSPLWQVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYE 500 (653)
Q Consensus 421 ~e~~~~~~~~~P~~~~~~~ir~~~~~g~~~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~ 500 (653)
+.| -+..++..+++.++..+..++|..| ++++..|.++|++...|+||.
T Consensus 45 ---------d~p---------------------~i~~~~~~~f~~il~~~~~~~d~~g-k~~~d~feklp~~~~~p~yy~ 93 (629)
T KOG1827|consen 45 ---------DSP---------------------VIDPPLIPKFKTILASLLDLKDDEG-KQLFDKFEKLPSRKEFPEYYY 93 (629)
T ss_pred ---------Ccc---------------------ccChHHHHHHHHHHHHHHhhccccC-cccchhHhhccccccCCCcce
Confidence 000 0123678889999999999999999 999999999999999999999
Q ss_pred cccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChhHHH
Q psy15468 501 VIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAAVQ 580 (653)
Q Consensus 501 iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~~~~~~P~~~~~~~ 580 (653)
+|..||+|+.|++|+..++|.+++.|..|+.+|+.||+.||.++|.+|+++..|+..|.....+....+.+++....+..
T Consensus 94 ~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~e~s~~~~~~l~~ 173 (629)
T KOG1827|consen 94 VIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYFISLEDEKKDGELSMESNEELKA 173 (629)
T ss_pred eecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcchhhhhccccchhhcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999997655433222233333322211
Q ss_pred hhhh-cccc-ccccCCccCCCceeeccCCCchHHHHHHHHHHHHcccccCCCcccccccccCCCCCCCcccccc
Q psy15468 581 ELLT-SLFT-SVYNHQKQCLGSFHVLNVDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652 (653)
Q Consensus 581 ~~~~-~l~~-~~~~~~~~~~g~~~~~~~~~~p~k~ri~~i~k~l~~~~d~~gr~l~~~F~~lPsk~~~p~YY~v 652 (653)
..+. .... ...+++.+.+|+|++.+++.+..+.++.. ..-|+++|++..||+||.+
T Consensus 174 ~~l~~~~~~~~~i~~~~~~~gd~vlv~~~~d~~~p~v~~----------------Ier~w~~~dg~k~~~~~w~ 231 (629)
T KOG1827|consen 174 GGLHYHELGPVEIDGTKYIVGDYVLVQNPADNLKPIVAQ----------------IERLWKLPDGEKWPQGCWI 231 (629)
T ss_pred CCCCcccCCCccccCcccccCceeeecCcccccCCceee----------------ecccccCcccccccceeEe
Confidence 1111 1111 35567788899999999887654444432 3478889999999999875
No 73
>KOG1472|consensus
Probab=99.77 E-value=8.5e-19 Score=198.14 Aligned_cols=98 Identities=31% Similarity=0.496 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
..++.++..|.++.+ +|||.+|+.+.+.||||.+|++||||.||+.+|+.+.|..+..|+.|+..||.||+.||
T Consensus 609 s~~~~il~~l~~h~~------awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn 682 (720)
T KOG1472|consen 609 SAIQNILDQLQNHGD------AWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYN 682 (720)
T ss_pred HHHHhHHhhhhcCCc------cCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccC
Confidence 345667777777666 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 356 EPGSQIYKDAKALKKLVQTKKMEI 379 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~~~~~i 379 (653)
+.++..|+.|..|...|..++.+.
T Consensus 683 ~~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 683 GSDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred Cccchheecccchhhhhcchhhhh
Confidence 999999999999999998877654
No 74
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.76 E-value=1.5e-18 Score=148.67 Aligned_cols=84 Identities=36% Similarity=0.750 Sum_probs=78.4
Q ss_pred HHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCC
Q psy15468 278 CEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEP 357 (653)
Q Consensus 278 ~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~ 357 (653)
|..+++.|+.+. .+++|..+|+...+|+|+++|++||||++|++||++|.|.++++|..||++||.||..||++
T Consensus 1 C~~il~~l~~~~------~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~ 74 (84)
T PF00439_consen 1 CREILEELMKHP------ISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPP 74 (84)
T ss_dssp HHHHHHHHHTST------TGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHcCC------CchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCC
Confidence 789999999875 49999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH
Q psy15468 358 GSQIYKDAKA 367 (653)
Q Consensus 358 ~S~i~~~A~~ 367 (653)
+|.+|.+|..
T Consensus 75 ~s~~~~~A~~ 84 (84)
T PF00439_consen 75 DSPIYKAAEK 84 (84)
T ss_dssp TSHHHHHHHH
T ss_pred cCHHHHHhcC
Confidence 9999999974
No 75
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=3.7e-18 Score=153.22 Aligned_cols=98 Identities=19% Similarity=0.312 Sum_probs=82.9
Q ss_pred HHHHHHHHHhccCCCCccccccccccc-----ccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 278 CEDLFNAVMTSTDADSRPLHEVFQLLP-----SKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 278 ~~~ll~~l~~~~d~~g~~~a~~F~~~p-----~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
+..++..+.+-- +-+.||+.++ .+..+|+||++|++||||+||++||++|.|+++++|..||.|||+||.
T Consensus 5 L~f~~~~~k~~l-----p~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~ 79 (109)
T cd05492 5 LKFIVSRMKSWL-----PPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTA 79 (109)
T ss_pred HHHHHHHHHhcC-----cccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 445555555422 2245666654 556799999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 353 TFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 353 ~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
.||+++|.++.+|..|.+.+...+.+|.
T Consensus 80 ~yNg~~s~~~~~A~~l~~d~~~el~Ei~ 107 (109)
T cd05492 80 IFHGADSEQYDAARWLYRDTCHDLRELR 107 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999988888764
No 76
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.76 E-value=3e-18 Score=153.87 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=77.9
Q ss_pred ccccccCC-----CCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHHHhhhcccCcCCCHH
Q psy15468 123 CDPFIRIP-----KKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLS 197 (653)
Q Consensus 123 ~~~F~~~v-----~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~~~~~~~~~~Y~~~~ 197 (653)
+.||..+| .+..+|+||++|++||||+||++||++|. |.+++
T Consensus 19 ~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~---------------------------------Y~s~~ 65 (109)
T cd05492 19 DTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEK---------------------------------YTSLE 65 (109)
T ss_pred cccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCC---------------------------------CCCHH
Confidence 68888887 45679999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhc
Q psy15468 198 DFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKL 238 (653)
Q Consensus 198 ~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~ 238 (653)
+|.+|+.|||+||..||+++|.++.+|..|.+.+...++++
T Consensus 66 ef~~Dv~LI~~N~~~yNg~~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 66 EFKADALLLLHNTAIFHGADSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998887765
No 77
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.75 E-value=2.5e-18 Score=150.30 Aligned_cols=96 Identities=42% Similarity=0.677 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
..|..+++.|..+. +..+.+|..+|+...+|+||++|++||||++|++|+.+|.|.++.+|..|+++||.||..||
T Consensus 3 ~~~~~i~~~l~~~~----~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n 78 (99)
T cd04369 3 KKLRSLLDALKKLK----RDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYN 78 (99)
T ss_pred HHHHHHHHHHHhhc----ccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 56889999998863 45699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q psy15468 356 EPGSQIYKDAKALKKLVQTK 375 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~~ 375 (653)
+++|.++.+|..|...|++.
T Consensus 79 ~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 79 GPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 78
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.75 E-value=2.1e-18 Score=147.81 Aligned_cols=84 Identities=25% Similarity=0.573 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHH
Q psy15468 104 MQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIK 183 (653)
Q Consensus 104 ~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~ 183 (653)
|+.|++.+..++ .+++|..||+...+|+|+++|++||||++|++||++|.
T Consensus 1 C~~il~~l~~~~------~~~~F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~~~~------------------------ 50 (84)
T PF00439_consen 1 CREILEELMKHP------ISSPFSKPVDPKEYPDYYEIIKNPMDLSTIRKKLENGK------------------------ 50 (84)
T ss_dssp HHHHHHHHHTST------TGGGGSSSTHTTTSTTHHHHSSSS--HHHHHHHHHTTS------------------------
T ss_pred CHHHHHHHHcCC------CchhhcCCCChhhCCCHHHHHhhccchhhhhHHhhccc------------------------
Confidence 678888888765 49999999999999999999999999999999999999
Q ss_pred HhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHH
Q psy15468 184 IQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQE 226 (653)
Q Consensus 184 ~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~ 226 (653)
|.++++|..||++||.||..||+++|.++++|++
T Consensus 51 ---------Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~~A~~ 84 (84)
T PF00439_consen 51 ---------YKSIEEFEADVRLIFQNARRYNPPDSPIYKAAEK 84 (84)
T ss_dssp ---------SSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHH
T ss_pred ---------hhhHHHHHHHHHHHHHHHHHHCCCcCHHHHHhcC
Confidence 9999999999999999999999999999999974
No 79
>KOG1827|consensus
Probab=99.74 E-value=1.9e-18 Score=192.51 Aligned_cols=282 Identities=23% Similarity=0.354 Sum_probs=208.7
Q ss_pred HHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccCCCcccCCCCCCCCChHHHHHHH
Q psy15468 200 QADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQNQCE 279 (653)
Q Consensus 200 ~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ss~~~~~~~~~~~ 279 (653)
..|+-||..|+-.||.+.|.+++.|..+.+.-.... .....++. ..-......++.
T Consensus 3 ~~df~l~~e~~~~~~~p~s~p~k~~~~~~~~~~~~k-~~~~~~d~-----------------------p~i~~~~~~~f~ 58 (629)
T KOG1827|consen 3 VADFPLMTENACSDNEPDSLPGKDAKNLQKTPLHDK-TLMGRDDS-----------------------PVIDPPLIPKFK 58 (629)
T ss_pred hhhhhHHhhccccccCCccccccCcchhhhchhhhh-cccCCCCc-----------------------cccChHHHHHHH
Confidence 578999999999999999999999999886644332 11111110 011123467899
Q ss_pred HHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCCCC
Q psy15468 280 DLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGS 359 (653)
Q Consensus 280 ~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~S 359 (653)
.+|..++.++|..|+.+...|.++|+++..|+||.+|.+||+|..|++|+..+.|.+.+.|..|+.+|+.||+.||.++|
T Consensus 59 ~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds 138 (629)
T KOG1827|consen 59 TILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDS 138 (629)
T ss_pred HHHHHHHhhccccCcccchhHhhccccccCCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCchhhhhcCCCCCCCCCCcccccCCCCCCCchhhhhh
Q psy15468 360 QIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLWQVYDA 439 (653)
Q Consensus 360 ~i~~~A~~L~~~~~~~~~~i~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~e~~~~sd~e~~~~~~~~~P~~~~~~~ 439 (653)
.+|++|..|+..|.....+....+..- ++ ......+-++.... +. -.........
T Consensus 139 ~~~~~s~~l~~~~~~~~~~~~d~e~s~-------------~~-~~~l~~~~l~~~~~---~~-----~~i~~~~~~~--- 193 (629)
T KOG1827|consen 139 LIYKDSGELEKYFISLEDEKKDGELSM-------------ES-NEELKAGGLHYHEL---GP-----VEIDGTKYIV--- 193 (629)
T ss_pred hhhhhhhhhhcchhhhhccccchhhcc-------------cc-ccccccCCCCcccC---CC-----ccccCccccc---
Confidence 999999999999876443211111000 00 00000000000000 00 0000000000
Q ss_pred hhccccCCcccccccCCHHHHHHHHHHHHHHHhhcC-CCCCcc-cccccccCcCCCCCCcccccccCccchHHHHHHHhc
Q psy15468 440 IRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCE-PKTGRQ-LSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRY 517 (653)
Q Consensus 440 ir~~~~~g~~~~~s~~~~~~~~~lk~l~~~l~~~~d-~~g~~~-ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~ 517 (653)
| .+..+..-.+ ..+ +. ....|+.+|+...+|+||.+++-+|.++...+++..
T Consensus 194 -------g------------------d~vlv~~~~d~~~p-~v~~Ier~w~~~dg~k~~~~~w~~rP~~T~H~a~r~F~k 247 (629)
T KOG1827|consen 194 -------G------------------DYVLVQNPADNLKP-IVAQIERLWKLPDGEKWPQGCWIYRPEETVHRADRKFYK 247 (629)
T ss_pred -------C------------------ceeeecCcccccCC-ceeeecccccCcccccccceeEeeCCccCccccccchhc
Confidence 0 1111222222 122 22 367899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy15468 518 NQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQR 556 (653)
Q Consensus 518 ~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~ 556 (653)
++|.....|..|+.++|.|+|.|+-+..-++.++..|.+
T Consensus 248 ~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~ 286 (629)
T KOG1827|consen 248 QEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSE 286 (629)
T ss_pred ccceecccccccHHHHhhcceEEeehhHhhhcCcccccc
Confidence 999999999999999999999999999999999988865
No 80
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.74 E-value=5e-18 Score=148.42 Aligned_cols=96 Identities=40% Similarity=0.657 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy15468 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKY 540 (653)
Q Consensus 461 ~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~Y 540 (653)
..|..+++.|.... ++.+.+|..+|+...+|+||++|++||||.+|++||.++.|.++++|.+|+.+||.||+.|
T Consensus 3 ~~~~~i~~~l~~~~-----~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~ 77 (99)
T cd04369 3 KKLRSLLDALKKLK-----RDLSEPFLEPVDPKEAPDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTY 77 (99)
T ss_pred HHHHHHHHHHHhhc-----ccccHHHhcCCChhcCCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45777888887632 2678999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q psy15468 541 NEPDSHIYKDALSLQRIVLQT 561 (653)
Q Consensus 541 N~~~S~iy~dA~~L~~~~~~~ 561 (653)
|+++|.++..|..|+..|++.
T Consensus 78 n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 78 NGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998754
No 81
>KOG1472|consensus
Probab=99.74 E-value=4.8e-18 Score=192.13 Aligned_cols=96 Identities=27% Similarity=0.560 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcC
Q psy15468 463 MRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE 542 (653)
Q Consensus 463 lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~YN~ 542 (653)
+..++..|.+ +.-+|||++|+...+.||||.+|++||||.+|+.+|+.+.|..+..|++|+.++|.||+.||.
T Consensus 611 ~~~il~~l~~-------h~~awPf~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn~ 683 (720)
T KOG1472|consen 611 IQNILDQLQN-------HGDAWPFLKPVNKKEVPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYNG 683 (720)
T ss_pred HHhHHhhhhc-------CCccCCccCccccccCCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccCC
Confidence 4445555544 556899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 543 PDSHIYKDALSLQRIVLQTKMHL 565 (653)
Q Consensus 543 ~~S~iy~dA~~L~~~~~~~~~eL 565 (653)
.+++.|+.|..|..+|..+..++
T Consensus 684 ~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 684 SDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred ccchheecccchhhhhcchhhhh
Confidence 99999999999999997766554
No 82
>KOG0008|consensus
Probab=99.70 E-value=4.1e-17 Score=190.04 Aligned_cols=208 Identities=24% Similarity=0.396 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
-.+..+.+.+....+ ..+|..|++.+.+++||.||+.||||.++++.+....|.+-++|..|+.||+.|..+||
T Consensus 1264 s~l~~i~n~~~~~~~------t~~f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yn 1337 (1563)
T KOG0008|consen 1264 SILETIINQARSSPN------TYPFPTPVNAKEVKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYN 1337 (1563)
T ss_pred cchHHHHHHHhcCCC------CcCCCCccchhhccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhc
Confidence 345555555555544 78999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCchhhhhcCCCCCCCCCCcccccCCCCCCCchh
Q psy15468 356 EPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLWQ 435 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~~~~~i~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~e~~~~sd~e~~~~~~~~~P~~~ 435 (653)
++-+.+...|+.+...+-..|.+-+.... +.. ...+|...
T Consensus 1338 g~~~~~t~~~q~mls~~~~~~~ekedk~~-------~lE---------------------------------k~Inplld 1377 (1563)
T KOG0008|consen 1338 GPLASLTRQQQSMLSLCFEKLKEKEDKLW-------RLE---------------------------------KAINPLLD 1377 (1563)
T ss_pred CchHHHHHHHHHHHHHHHHhhchhHHHHH-------HHH---------------------------------hhcCcccC
Confidence 99999999998887777666554332210 000 00000000
Q ss_pred hhhhhhccccCCcccccccCCHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHH
Q psy15468 436 VYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKL 515 (653)
Q Consensus 436 ~~~~ir~~~~~g~~~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl 515 (653)
--+.+ .+ .+++.+..... . -+-+|+|.+++..+..|+||.+|++||+|.+|.+++
T Consensus 1378 ~~d~v---------------------~~-~~~d~~vs~~~--~-ipes~~f~~~v~~k~~~~yy~kik~pmdl~~i~~n~ 1432 (1563)
T KOG0008|consen 1378 DDDQV---------------------AF-FILDNIVSQMK--E-IPESWPFHEPVNKKRVPDYYKKIKNPMDLETILKNI 1432 (1563)
T ss_pred ccchh---------------------hH-hhhhhHHHHHH--h-cchhcccccccchhhchHHHHHhcChhhHHHHhhcC
Confidence 00000 01 23333322211 1 455899999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy15468 516 RYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSL 554 (653)
Q Consensus 516 ~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L 554 (653)
..++|.+.++|.+|+++|+.|+..||+.++....-|..+
T Consensus 1433 ~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~ 1471 (1563)
T KOG0008|consen 1433 PPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKI 1471 (1563)
T ss_pred CccccccHHHHhhhhHhhcccceeecCccccccHHHHHH
Confidence 999999999999999999999999999988755544443
No 83
>KOG1245|consensus
Probab=99.59 E-value=9.8e-16 Score=186.68 Aligned_cols=96 Identities=26% Similarity=0.471 Sum_probs=91.5
Q ss_pred HHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHH
Q psy15468 104 MQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIK 183 (653)
Q Consensus 104 ~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~ 183 (653)
|+.|+..+..|+. ||||+.||+.+.+||||+||++||||+||+.|+..|.
T Consensus 1306 ~e~il~e~~~~~~------awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~------------------------ 1355 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA------AWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGI------------------------ 1355 (1404)
T ss_pred HHHHHHHHHHhhh------cchhhccCChhhcccHHHHhcChhHHHHHHHHHhccc------------------------
Confidence 7889999998887 9999999999999999999999999999999999999
Q ss_pred HhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhcc
Q psy15468 184 IQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLL 239 (653)
Q Consensus 184 ~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~ 239 (653)
|.+.++|..||+|||.||.+||.+ |.+++++..|..+|.+.|..+.
T Consensus 1356 ---------Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ag~~l~~ff~~~~~~~~ 1401 (1404)
T KOG1245|consen 1356 ---------YPSPEEFATDIELVFDNCETYNED-SEIGRAGTCLRRFFHKRWRKKF 1401 (1404)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHhccc-hhhhhhcchHHHHHHHHHHhhc
Confidence 999999999999999999999999 9999999999999999776653
No 84
>KOG1245|consensus
Probab=99.50 E-value=1.7e-14 Score=175.94 Aligned_cols=95 Identities=28% Similarity=0.520 Sum_probs=91.8
Q ss_pred HHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCC
Q psy15468 278 CEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEP 357 (653)
Q Consensus 278 ~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~ 357 (653)
|..|+..++.|++ ||||++||+.+.+|+||+||++||||+||+.|+..|.|.+.++|..||+|||.||.+||+.
T Consensus 1306 ~e~il~e~~~~~~------awPFlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~ 1379 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA------AWPFLEPVNPKEVPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED 1379 (1404)
T ss_pred HHHHHHHHHHhhh------cchhhccCChhhcccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhh
Q psy15468 358 GSQIYKDAKALKKLVQTKKMEI 379 (653)
Q Consensus 358 ~S~i~~~A~~L~~~~~~~~~~i 379 (653)
|.|+.+...|.++|..+|...
T Consensus 1380 -s~i~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1380 -SEIGRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred -hhhhhhcchHHHHHHHHHHhh
Confidence 999999999999999877654
No 85
>KOG0386|consensus
Probab=99.27 E-value=5.1e-12 Score=145.38 Aligned_cols=107 Identities=35% Similarity=0.690 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy15468 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKY 540 (653)
Q Consensus 461 ~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~Y 540 (653)
..+..|+....++.++.| +.++..|..+|++..+||||.+|++|+++..|+++|.++.|.++.+...||.++|.||++|
T Consensus 1027 ~~~~~i~~~~~~~~~~~~-r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~ 1105 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAG-RELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTY 1105 (1157)
T ss_pred HHHHHHHHHHHhcccccc-cccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhh
Confidence 457889999999999888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy15468 541 NEPDSHIYKDALSLQRIVLQTKMHLRED 568 (653)
Q Consensus 541 N~~~S~iy~dA~~L~~~~~~~~~eL~~~ 568 (653)
|+.||.||.+|..|+.++..+..++..+
T Consensus 1106 ~~egs~~y~d~~~l~~~~~~~~~~~~~~ 1133 (1157)
T KOG0386|consen 1106 NEEGSRVYEDAIVLQSVFKSARQEISKE 1133 (1157)
T ss_pred ccCCceechhHHHHHHHHhhhHHHHhcc
Confidence 9999999999999999999999999864
No 86
>KOG1828|consensus
Probab=99.26 E-value=1.8e-12 Score=135.92 Aligned_cols=209 Identities=19% Similarity=0.174 Sum_probs=148.8
Q ss_pred ccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHHHhhhcccCcCCCHHHHHHH
Q psy15468 123 CDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQAD 202 (653)
Q Consensus 123 ~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D 202 (653)
-.-|-.||.....|+|-+||+.|||++||+.|++-++ |-++.+|..|
T Consensus 37 ~q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~---------------------------------yl~L~~m~~d 83 (418)
T KOG1828|consen 37 KQKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTR---------------------------------YLVLSQMEFD 83 (418)
T ss_pred hhhhccccchhhccchHhhhhcccccccccccCCCcc---------------------------------ceechhhhhh
Confidence 4567788999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhh----ccC-CCCC---C-----------Cc--ccccccc-----cc
Q psy15468 203 IELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNK----LLN-PQSH---E-----------GT--SQKRSMD-----FM 256 (653)
Q Consensus 203 ~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~----~~~-~~~~---~-----------~~--~~~r~~~-----~~ 256 (653)
.+++++||..||..+.....+|.+|..+-.....+ +++ +... . .. ++.+.-. ..
T Consensus 84 ~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~~~~qe~~l~f~~~slg~y~~~rn~~~~v~~la~~~~sr~~~~d~~a~~s~ 163 (418)
T KOG1828|consen 84 RKLPDGNATLYNLHPTVPIVAAKRLCPVRLGMTQERLLSFVNTSLGFYEDKRNKVTPVLYLAYGPYSRYHYDDTFANISK 163 (418)
T ss_pred hcccccchhhhhcCCccccccccccchhhcchhhHHHHHhhhcccchhhhcccccCceeeeccCCccchhhhhhcCCCcc
Confidence 99999999999999999999999987664443322 111 1110 0 00 0000000 00
Q ss_pred CCCc-------ccCCCC---CCC----------CC----hHH---HHHHHHHHHHHHhccCCCCcccccccccccccCCC
Q psy15468 257 MASE-------TEDSRD---SSI----------CT----EDE---QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRY 309 (653)
Q Consensus 257 ~~~~-------~~~~~~---ss~----------~~----~~~---~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~ 309 (653)
.++. .+++.+ +.. .. .++ ..+++.+...=++..++ ...|.-+|-....
T Consensus 164 ee~~l~v~~~e~~~~~~~~fs~k~~e~~~e~~~~lgds~g~lqtg~~~l~~~q~~kl~~~~p-----~~~lnyg~tas~a 238 (418)
T KOG1828|consen 164 EESDLIVSTYEEDSDLPSDFSHKFLETCQERVVTLGDSVGDLQTGGQQLQTLQEDKLNRVDP-----VAYLNYGPTASFA 238 (418)
T ss_pred cccccccccccccccccccccccccccCccceEehhhhhhhhccccHHHHHHHHHHhcccCc-----hhhhcccchhhhc
Confidence 0000 000000 000 00 011 23444444444444443 3345567777788
Q ss_pred CCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHH
Q psy15468 310 PEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKK 370 (653)
Q Consensus 310 PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~~ 370 (653)
|.|-.+|++|++.+|+..|..++.|.| -+|..|+.+|+-||.+||++....|+.|..+.-
T Consensus 239 P~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 239 PGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred ccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 999999999999999999999999999 899999999999999999999999999887654
No 87
>KOG1828|consensus
Probab=99.22 E-value=5.7e-12 Score=132.24 Aligned_cols=245 Identities=20% Similarity=0.154 Sum_probs=145.3
Q ss_pred cccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHH
Q psy15468 298 EVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKM 377 (653)
Q Consensus 298 ~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~~~~~~~~~ 377 (653)
.-|.-|+...-.|+|-++|+.|||+.|++.|++-++|.++.+|..|.++|..||..||-....++..|..|..+-.....
T Consensus 38 q~fafplt~~map~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~~~~q 117 (418)
T KOG1828|consen 38 QKFAFPLTDKMAPNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRLGMTQ 117 (418)
T ss_pred hhhccccchhhccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhcchhh
Confidence 33444555567799999999999999999999999999999999999999999999999999999999999876544332
Q ss_pred h-hhcCCCCCCCccccc-ccccc-c----CCCC---chhhhhcC-CCCCCC-CCCcccccCCCCCCCchhhhhh-hhccc
Q psy15468 378 E-IEQGKFTPAGKSERI-RSKRI-R----GGQS---LSAITAAL-ESEDDE-SEDDEEIDQEDPNSPLWQVYDA-IRNAK 444 (653)
Q Consensus 378 ~-i~~~~~~~~~k~~r~-~~~~~-~----~~~~---~~~~~~~~-~~e~~~-~sd~e~~~~~~~~~P~~~~~~~-ir~~~ 444 (653)
+ +...-.++.+-..++ .+... . +.-+ ..+..++. .+++.- -+..+ .. ++-.|.+... .-+..
T Consensus 118 e~~l~f~~~slg~y~~~rn~~~~v~~la~~~~sr~~~~d~~a~~s~ee~~l~v~~~e----~~-~~~~~~fs~k~~e~~~ 192 (418)
T KOG1828|consen 118 ERLLSFVNTSLGFYEDKRNKVTPVLYLAYGPYSRYHYDDTFANISKEESDLIVSTYE----ED-SDLPSDFSHKFLETCQ 192 (418)
T ss_pred HHHHHhhhcccchhhhcccccCceeeeccCCccchhhhhhcCCCccccccccccccc----cc-ccccccccccccccCc
Confidence 2 111111110000000 00000 0 0000 00000000 000000 00000 00 0000100000 00000
Q ss_pred cCCc--c-cccccCCHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCC
Q psy15468 445 TQGV--I-FFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYE 521 (653)
Q Consensus 445 ~~g~--~-~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~ 521 (653)
. ++ + +....+.++.++.+....+.+ +..++. ..|.-+|.....|.|.-+|++|++..|.+.|..++.|.
T Consensus 193 e-~~~~lgds~g~lqtg~~~l~~~q~~kl-~~~~p~------~~lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~andy~ 264 (418)
T KOG1828|consen 193 E-RVVTLGDSVGDLQTGGQQLQTLQEDKL-NRVDPV------AYLNYGPTASFAPGYSMTITEVEPPGTYGDKSSANDYE 264 (418)
T ss_pred c-ceEehhhhhhhhccccHHHHHHHHHHh-cccCch------hhhcccchhhhcccccccccccCCCcchhhhhhhhhhh
Confidence 0 00 0 000001122222222222222 233333 35666777788999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy15468 522 HLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQR 556 (653)
Q Consensus 522 s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~ 556 (653)
| -+|..|+.+|+.||.+||++....|+.|..+.-
T Consensus 265 S-~~f~~D~kl~~l~amT~gehsk~yyelank~lh 298 (418)
T KOG1828|consen 265 S-LSFTQDRKLIALKAVTNGEHSKSYYELANKQLH 298 (418)
T ss_pred h-hhhhcccchhhHHHHhcCCcchHHHHHHHhhhh
Confidence 9 999999999999999999998888888876554
No 88
>KOG0386|consensus
Probab=99.16 E-value=3.2e-11 Score=138.94 Aligned_cols=106 Identities=39% Similarity=0.725 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhC
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFN 355 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN 355 (653)
+.|..|+....++.+++|+.++..|..+|+++.+||||++|+.|+++..|.++|.++.|.+..+...|+.++|.||++||
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~ 1106 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNARTYN 1106 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCcccccccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhhhc
Confidence 66999999999999989999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 356 EPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 356 ~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
+.||.||.+|..|+.++.....++..
T Consensus 1107 ~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1107 EEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred cCCceechhHHHHHHHHhhhHHHHhc
Confidence 99999999999999999988777764
No 89
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.95 E-value=5.9e-10 Score=101.47 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhhhcCCccccccccCCCC--CCCCccccccCCccchHHHHHHHhcCC
Q psy15468 102 DAMQQIYDVIRNFKKEDGALLCDPFIRIPKK--RQEPSYHEVVTNPIDFIKIQQKLKTDE 159 (653)
Q Consensus 102 ~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~--~~~PdYy~iI~~PmDL~tI~~kl~~~~ 159 (653)
+.|+.++..++.+.. ...++||..||+. ..+||||+|||+||||+||+.||.++.
T Consensus 3 e~~~~~l~~l~~~~~---~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~ 59 (114)
T cd05494 3 EALERVLRELKRHRR---NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETG 59 (114)
T ss_pred HHHHHHHHHHHHhhh---CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccc
Confidence 567778888887765 3459999999998 999999999999999999999999987
No 90
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.78 E-value=1e-08 Score=92.65 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=39.3
Q ss_pred CcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q psy15468 318 VPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPG 358 (653)
Q Consensus 318 ~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~ 358 (653)
.||||+||++||.+|.|.++.+|++|++|||.||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999999999873
No 91
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.73 E-value=5.3e-09 Score=95.24 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhccCCCCccccccccccccc--CCCCCcccccCCcCCHHHHHHHhhCCCC-------CCHHHHHHHHHH
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSK--KRYPEYYDVIDVPIDLRTIARRIQDGKY-------ASLGDMEKDLIL 346 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~--~~~PdYy~iIk~PmDL~tI~~kl~~~~Y-------~s~~ef~~Dv~L 346 (653)
+.|+.++..|..+.. +..++||..||+. ...||||++|++||||+||+++|.++.+ ..-....+++..
T Consensus 3 e~~~~~l~~l~~~~~---~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T cd05494 3 EALERVLRELKRHRR---NEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQID 79 (114)
T ss_pred HHHHHHHHHHHHhhh---CCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccc
Confidence 345666666666542 4569999999998 8999999999999999999999999744 333344455555
Q ss_pred HHHhhhhhCC
Q psy15468 347 MTKNACTFNE 356 (653)
Q Consensus 347 mf~Na~~yN~ 356 (653)
++.||-.+|.
T Consensus 80 ~~~~~~~~~~ 89 (114)
T cd05494 80 DEGRRSPSNI 89 (114)
T ss_pred cccccCcccc
Confidence 5555555554
No 92
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.72 E-value=1.1e-08 Score=92.45 Aligned_cols=41 Identities=15% Similarity=0.324 Sum_probs=38.9
Q ss_pred CccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy15468 504 KPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPD 544 (653)
Q Consensus 504 ~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~ 544 (653)
-||||+||++||.+|.|.++++|++|++|||.||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 38999999999999999999999999999999999999763
No 93
>KOG0955|consensus
Probab=98.56 E-value=6.9e-08 Score=114.84 Aligned_cols=82 Identities=23% Similarity=0.454 Sum_probs=77.7
Q ss_pred ccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHHHhhhcccCcCCCHHHHHHH
Q psy15468 123 CDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQAD 202 (653)
Q Consensus 123 ~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D 202 (653)
...|..||+...+|||+++|++||||.|++.++.++. |.++++|.+|
T Consensus 583 ~gif~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~---------------------------------y~tle~ieed 629 (1051)
T KOG0955|consen 583 YGIFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGA---------------------------------YSTLEPIEED 629 (1051)
T ss_pred cCceeeccChhhcccHHHHhcCccchhhhhhhccccc---------------------------------hhhhhHHHHh
Confidence 5789999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhh
Q psy15468 203 IELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNK 237 (653)
Q Consensus 203 ~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~ 237 (653)
+.+|+.||..||..+...+++|.++.+...+.+..
T Consensus 630 ~~l~~~nc~~yn~~dtv~~r~av~~~e~~~~~~~~ 664 (1051)
T KOG0955|consen 630 VNLIVSNCMEYNAKDTVYYRAAVRLRELIKKDFRN 664 (1051)
T ss_pred HhHhHhHHHHhhccCeehHhhhHHHHhhhhhHHHh
Confidence 99999999999999999999999999987776643
No 94
>KOG0955|consensus
Probab=98.49 E-value=1.9e-07 Score=111.20 Aligned_cols=105 Identities=21% Similarity=0.390 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15468 456 TAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFD 535 (653)
Q Consensus 456 ~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~ 535 (653)
..+.+..++..++.+.+ +|..| .|..+++..++|||.++|++||+|.+++.++.++.|.++++|.+|+.+|..
T Consensus 563 l~p~~kLl~~~l~~lq~-kD~~g------if~~pvd~~e~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~ 635 (1051)
T KOG0955|consen 563 LNPFKKLLQKSLDKLQK-KDSYG------IFAEPVDPSELPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVS 635 (1051)
T ss_pred CchHHHHHHHHHHHhhc-ccccC------ceeeccChhhcccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHh
Confidence 34667777777777764 45444 899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 536 NACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 536 Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
||..||..+.-.|.+|..++......+.....
T Consensus 636 nc~~yn~~dtv~~r~av~~~e~~~~~~~~ark 667 (1051)
T KOG0955|consen 636 NCMEYNAKDTVYYRAAVRLRELIKKDFRNARK 667 (1051)
T ss_pred HHHHhhccCeehHhhhHHHHhhhhhHHHhccc
Confidence 99999999999999999999987666655543
No 95
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=94.51 E-value=0.068 Score=49.78 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=45.7
Q ss_pred ccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 505 PVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHL 565 (653)
Q Consensus 505 PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL 565 (653)
|.||..|++|+++|.|+|+.+|.+|+..|+.-+..=.+....+-+.-..+.-+|.+...+.
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~v 119 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESV 119 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999887655544444443334444554444444
No 96
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=93.01 E-value=0.17 Score=47.17 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=42.9
Q ss_pred cCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q psy15468 319 PIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKME 378 (653)
Q Consensus 319 PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~ 378 (653)
|.||..|++|+..|.|+++.+|.+||-.|+.-+..=.+-...+-+.-..++-+|...+.+
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 889999999999999999999999999999877744333233333333344445444443
No 97
>KOG0644|consensus
Probab=87.45 E-value=0.32 Score=56.97 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=49.1
Q ss_pred ccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q psy15468 502 IRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQ 560 (653)
Q Consensus 502 Ik~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~~~~~ 560 (653)
-.-|.++..|+.+|+++.|++.+.|..|+..|..||.+|.+-+-.+-..+..|..+|..
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~ 1108 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDR 1108 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhh
Confidence 34589999999999999999999999999999999999999776555555555555543
No 98
>KOG0644|consensus
Probab=80.10 E-value=1.3 Score=52.08 Aligned_cols=54 Identities=24% Similarity=0.388 Sum_probs=43.0
Q ss_pred HHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHh
Q psy15468 182 IKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTR 235 (653)
Q Consensus 182 ~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~ 235 (653)
..|..|+++--|++++.|..|+..|.+||.+|++.+--+...+..|...|.+++
T Consensus 1057 evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1057 EVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred HHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 344444444449999999999999999999999999888777777877776654
No 99
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=74.16 E-value=1.8 Score=41.32 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.6
Q ss_pred cceeecCCCCceeeeeeecccc
Q psy15468 20 PLELAVPGVDRLDIICIMVELT 41 (653)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~ 41 (653)
|| -.||+|||+|+.|......
T Consensus 10 pl-~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 10 PL-KEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred CC-CCCCCCCcCCCCCcCCCCC
Confidence 45 3899999999999975443
No 100
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=42.93 E-value=34 Score=28.34 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy15468 509 EMIASKLRYNQYEHLDEMVADFIQMFDNA 537 (653)
Q Consensus 509 ~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na 537 (653)
.-|+.++++|.|.|..+++.+..+++.--
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~~ 40 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEER 40 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999999999999887643
No 101
>KOG0732|consensus
Probab=40.17 E-value=7.9 Score=47.62 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=47.5
Q ss_pred CCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHH--HHHHHHHhhhhhCCCC
Q psy15468 309 YPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEK--DLILMTKNACTFNEPG 358 (653)
Q Consensus 309 ~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~--Dv~Lmf~Na~~yN~~~ 358 (653)
+++|-++|+++||+...-.++..+.|.++-+|.. ++.|||.|+..||+..
T Consensus 550 ~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 550 FQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred hHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 5689999999999999999999999999999999 9999999999999964
No 102
>KOG0732|consensus
Probab=36.62 E-value=11 Score=46.32 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhcCCCCCcccccccccCcCCC-----CCCcccccccCccchHHHHHHHhcCCCCCHHHHHH--HHHHH
Q psy15468 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRH-----DYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVA--DFIQM 533 (653)
Q Consensus 461 ~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~-----~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~--D~~Lm 533 (653)
..+..++.++....-... .-+..|..|++.. ..++|-.+|+++|++...-.++..+.|.++.+|.. ++.|+
T Consensus 513 V~~~~f~~A~~~i~ps~~--R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~li 590 (1080)
T KOG0732|consen 513 VEVRDFVEAMSRITPSSR--RSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLI 590 (1080)
T ss_pred hhhHhhhhhhhccCCCCC--ccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhh
Confidence 445556666665433222 2245566655422 15689999999999999999999999999999999 99999
Q ss_pred HHHHhhhcCCC
Q psy15468 534 FDNACKYNEPD 544 (653)
Q Consensus 534 f~Na~~YN~~~ 544 (653)
|.|+..||+..
T Consensus 591 c~~~lli~~~~ 601 (1080)
T KOG0732|consen 591 CRPRLLINGGK 601 (1080)
T ss_pred cCcHHhcCCCc
Confidence 99999999864
No 103
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=33.73 E-value=63 Score=26.74 Aligned_cols=28 Identities=18% Similarity=0.423 Sum_probs=24.1
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q psy15468 323 RTIARRIQDGKYASLGDMEKDLILMTKN 350 (653)
Q Consensus 323 ~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~N 350 (653)
..|++.+.+|.|.|..++++|.-.++.-
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999998776643
No 104
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=29.08 E-value=18 Score=38.90 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=0.0
Q ss_pred eeecCCCCceeeeeeecccccc
Q psy15468 22 ELAVPGVDRLDIICIMVELTYS 43 (653)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ 43 (653)
.|+||+|||||-..++|.-.|.
T Consensus 244 ~LavPeg~WFdkLav~vAe~y~ 265 (468)
T PF11498_consen 244 TLAVPEGDWFDKLAVTVAEQYN 265 (468)
T ss_dssp ----------------------
T ss_pred cccCCcchHHHHHhhhhccccC
Confidence 5999999999988888665544
No 105
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=28.83 E-value=70 Score=27.32 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15468 509 EMIASKLRYNQYEHLDEMVADFIQMFD 535 (653)
Q Consensus 509 ~~I~~kl~~~~Y~s~~ef~~D~~Lmf~ 535 (653)
.-|..+|.+|.|.|..+++.|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999999777665
No 106
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=23.82 E-value=98 Score=26.42 Aligned_cols=27 Identities=15% Similarity=0.445 Sum_probs=21.8
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHH
Q psy15468 323 RTIARRIQDGKYASLGDMEKDLILMTK 349 (653)
Q Consensus 323 ~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~ 349 (653)
.-|+.++.+|.|.|..+++.|.-.++.
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 459999999999999999999655554
No 107
>PHA02888 hypothetical protein; Provisional
Probab=21.69 E-value=88 Score=26.54 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCcc---chHHHHHHHhcCCCCChhhHHHHHHHHhhcCCc
Q psy15468 103 AMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPI---DFIKIQQKLKTDEYDDLSDFQADIELLVVTNPI 179 (653)
Q Consensus 103 ~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~Pm---DL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~ 179 (653)
-|+.+++.|.+=+ -.|.+--+++. .|+.|| .|.-|++.|-... | ..|+.|+
T Consensus 7 scq~iin~ving~--------cffgkc~nkk~------~i~~~mt~~el~yiq~wllekh---------d---lfiefpi 60 (96)
T PHA02888 7 SCQHIINRVINGE--------CFFGKCENKKL------AIKKAMTPQELAYIQEWLLEKH---------D---LFIEFPI 60 (96)
T ss_pred HHHHHHHHHccce--------eeeeeccCcce------eeecCCCHHHHHHHHHHHHhhc---------c---eeEEccH
Confidence 4899999998643 23444444432 466666 5777999988877 2 3579999
Q ss_pred hHHHHhh
Q psy15468 180 DFIKIQQ 186 (653)
Q Consensus 180 d~~~~~~ 186 (653)
|+++++.
T Consensus 61 dl~t~eh 67 (96)
T PHA02888 61 DLITMEH 67 (96)
T ss_pred HHHHHHH
Confidence 9999876
Done!