Query psy15468
Match_columns 653
No_of_seqs 506 out of 2805
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 21:50:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aad_A Transcription initiatio 100.0 3E-45 1E-49 383.2 22.4 265 49-381 3-272 (292)
2 3uv5_A Transcription initiatio 100.0 2.1E-44 7.3E-49 372.3 19.4 232 93-381 4-239 (265)
3 2r10_A Chromatin structure-rem 100.0 1.2E-42 4.1E-47 373.5 20.4 216 106-378 81-312 (361)
4 3uv5_A Transcription initiatio 100.0 3.3E-41 1.1E-45 348.4 24.7 225 274-567 15-239 (265)
5 2r0y_A Chromatin structure-rem 100.0 3.7E-42 1.3E-46 362.1 17.3 204 117-378 42-262 (311)
6 2r0y_A Chromatin structure-rem 100.0 1.1E-40 3.8E-45 350.9 18.5 232 276-565 31-263 (311)
7 2r10_A Chromatin structure-rem 100.0 1.6E-40 5.4E-45 357.0 19.1 232 276-565 81-313 (361)
8 3aad_A Transcription initiatio 100.0 3.7E-40 1.3E-44 344.8 19.9 224 275-567 49-272 (292)
9 2dat_A Possible global transcr 99.9 1.6E-26 5.4E-31 211.8 14.0 112 270-381 10-121 (123)
10 3iu5_A Protein polybromo-1; PB 99.9 6.7E-27 2.3E-31 212.1 10.5 112 98-242 4-115 (116)
11 3mb4_A Protein polybromo-1; PB 99.9 1.6E-26 5.4E-31 212.1 12.9 112 456-568 13-124 (124)
12 3iu5_A Protein polybromo-1; PB 99.9 2.3E-26 7.9E-31 208.6 11.6 110 272-381 4-113 (116)
13 3ljw_A Protein polybromo-1; al 99.9 3.9E-26 1.3E-30 208.3 11.5 111 272-382 7-117 (120)
14 3mb4_A Protein polybromo-1; PB 99.9 8.3E-26 2.8E-30 207.3 12.8 110 272-381 14-123 (124)
15 2dat_A Possible global transcr 99.9 1E-25 3.4E-30 206.5 13.0 110 457-567 12-121 (123)
16 3k2j_A Protein polybromo-1; PB 99.9 9.1E-26 3.1E-30 208.5 11.5 111 272-382 16-126 (130)
17 3mqm_A Probable histone-lysine 99.9 1.4E-25 4.8E-30 206.3 12.3 110 457-567 8-117 (126)
18 3ljw_A Protein polybromo-1; al 99.9 1.6E-25 5.4E-30 204.3 12.2 110 457-567 7-116 (120)
19 3mqm_A Probable histone-lysine 99.9 1.4E-25 4.7E-30 206.4 11.4 107 274-380 10-116 (126)
20 2grc_A Probable global transcr 99.9 2.1E-25 7.1E-30 206.0 12.1 113 270-382 8-121 (129)
21 3k2j_A Protein polybromo-1; PB 99.9 2.5E-25 8.5E-30 205.6 12.5 110 457-567 16-125 (130)
22 2grc_A Probable global transcr 99.9 3E-25 1E-29 204.9 12.4 113 456-568 9-121 (129)
23 3g0l_A Hwalp4, bromodomain adj 99.9 1.4E-24 4.7E-29 197.2 12.6 112 90-240 4-115 (117)
24 3tlp_A Protein polybromo-1; PB 99.9 2.7E-25 9.2E-30 210.5 7.6 109 99-240 24-133 (150)
25 3g0l_A Hwalp4, bromodomain adj 99.9 5.4E-24 1.9E-28 193.3 13.6 105 270-380 10-114 (117)
26 3d7c_A General control of amin 99.9 7.3E-24 2.5E-28 191.0 12.2 102 273-380 7-108 (112)
27 3tlp_A Protein polybromo-1; PB 99.9 8.8E-24 3E-28 200.1 12.4 109 459-567 25-133 (150)
28 2ouo_A HUNK1 protein, bromodom 99.9 7.5E-24 2.6E-28 195.8 10.2 108 271-381 20-129 (130)
29 3jvl_A Bromodomain-containing 99.9 5.7E-24 2E-28 194.0 9.3 110 270-382 6-117 (120)
30 2ouo_A HUNK1 protein, bromodom 99.9 5.1E-24 1.7E-28 196.9 8.9 112 93-240 16-129 (130)
31 3d7c_A General control of amin 99.9 2.3E-23 8E-28 187.7 13.0 103 457-566 6-108 (112)
32 2oss_A HUNK1 protein, bromodom 99.9 2E-23 6.9E-28 192.1 12.8 107 95-240 16-125 (127)
33 1e6i_A Transcriptional activat 99.9 1.7E-23 5.7E-28 191.1 12.0 102 274-381 14-115 (121)
34 3iu6_A Protein polybromo-1; PB 99.9 3.1E-23 1.1E-27 192.8 13.0 107 457-568 6-112 (147)
35 2oss_A HUNK1 protein, bromodom 99.9 3E-23 1E-27 190.9 12.9 106 271-382 19-126 (127)
36 1e6i_A Transcriptional activat 99.9 1.9E-23 6.6E-28 190.7 11.5 101 100-239 14-114 (121)
37 2d9e_A Peregrin; four-helix bu 99.9 4.1E-23 1.4E-27 188.5 12.8 102 273-380 7-108 (121)
38 4alg_A Bromodomain-containing 99.9 3.3E-23 1.1E-27 196.8 12.6 108 270-383 29-138 (154)
39 3nxb_A CAT eye syndrome critic 99.9 2.7E-23 9.2E-28 188.4 11.0 101 272-378 15-115 (116)
40 3nxb_A CAT eye syndrome critic 99.9 3E-23 1E-27 188.0 11.2 99 100-237 17-115 (116)
41 3q2e_A Bromodomain and WD repe 99.9 3.7E-23 1.3E-27 189.4 11.8 104 273-382 10-114 (123)
42 2d9e_A Peregrin; four-helix bu 99.9 4.7E-23 1.6E-27 188.1 12.0 105 456-567 5-109 (121)
43 3mb3_A PH-interacting protein; 99.9 5.1E-23 1.8E-27 191.5 12.4 105 271-381 19-124 (135)
44 2i7k_A Bromodomain-containing 99.9 5.9E-23 2E-27 186.3 12.2 104 456-566 6-109 (117)
45 2i7k_A Bromodomain-containing 99.9 5E-23 1.7E-27 186.8 11.2 101 274-380 9-109 (117)
46 4alg_A Bromodomain-containing 99.9 5E-23 1.7E-27 195.5 11.6 113 92-243 24-139 (154)
47 3mb3_A PH-interacting protein; 99.9 7.2E-23 2.4E-27 190.5 11.4 101 100-239 22-123 (135)
48 3q2e_A Bromodomain and WD repe 99.9 1.3E-22 4.3E-27 185.9 12.5 103 458-567 10-113 (123)
49 3o36_A Transcription intermedi 99.9 6.7E-23 2.3E-27 200.4 11.1 99 101-239 83-183 (184)
50 3p1f_A CREB-binding protein; s 99.9 1E-22 3.4E-27 185.5 11.3 111 94-239 3-115 (119)
51 3jvl_A Bromodomain-containing 99.9 5.8E-23 2E-27 187.3 9.3 108 457-568 8-117 (120)
52 2yyn_A Transcription intermedi 99.9 2E-22 6.8E-27 187.4 12.9 107 270-383 17-125 (135)
53 3uv4_A Second bromodomain of h 99.9 1.7E-22 5.7E-27 192.6 12.4 111 270-381 22-132 (158)
54 3hme_A Bromodomain-containing 99.9 1.4E-22 4.8E-27 185.5 10.8 99 100-237 14-112 (123)
55 3hme_A Bromodomain-containing 99.9 1.8E-22 6E-27 184.9 10.9 100 273-378 13-112 (123)
56 3p1f_A CREB-binding protein; s 99.9 2.6E-22 8.8E-27 182.7 11.6 103 273-380 11-115 (119)
57 3rcw_A Bromodomain-containing 99.9 2.9E-22 1E-26 186.3 12.1 102 273-380 13-114 (135)
58 3rcw_A Bromodomain-containing 99.9 3.9E-22 1.3E-26 185.5 12.2 105 456-567 11-115 (135)
59 3fkm_X Signaling protein; brom 99.9 4.9E-22 1.7E-26 191.0 12.8 103 272-380 20-124 (166)
60 3uv4_A Second bromodomain of h 99.9 5.2E-22 1.8E-26 189.2 11.3 106 99-238 25-130 (158)
61 2yyn_A Transcription intermedi 99.9 1.5E-21 5.2E-26 181.4 14.0 103 458-568 20-124 (135)
62 3iu6_A Protein polybromo-1; PB 99.9 1.8E-21 6.1E-26 181.0 13.6 105 274-382 8-112 (147)
63 3u5n_A E3 ubiquitin-protein li 99.9 8E-22 2.7E-26 196.3 10.9 100 101-240 83-202 (207)
64 2ri7_A Nucleosome-remodeling f 99.9 8.1E-22 2.8E-26 191.0 10.2 105 270-380 69-173 (174)
65 3fkm_X Signaling protein; brom 99.9 2.1E-21 7.2E-26 186.6 12.8 105 456-567 19-125 (166)
66 2ro1_A Transcription intermedi 99.9 8.2E-22 2.8E-26 193.4 9.7 97 101-241 78-179 (189)
67 2ri7_A Nucleosome-remodeling f 99.8 3.8E-21 1.3E-25 186.3 11.2 104 456-566 70-173 (174)
68 3dai_A ATPase family AAA domai 99.8 9.9E-21 3.4E-25 174.9 12.2 97 275-377 12-112 (130)
69 3dai_A ATPase family AAA domai 99.8 9.6E-21 3.3E-25 175.0 11.4 96 102-236 13-112 (130)
70 3o36_A Transcription intermedi 99.8 2.6E-20 9.1E-25 182.0 13.4 104 270-380 78-183 (184)
71 2dkw_A Hypothetical protein KI 99.8 1E-19 3.4E-24 168.1 12.3 94 274-378 13-110 (131)
72 2ro1_A Transcription intermedi 99.8 8.3E-20 2.8E-24 179.1 12.0 103 270-383 73-180 (189)
73 3u5n_A E3 ubiquitin-protein li 99.8 1.4E-19 4.9E-24 180.1 12.2 106 270-382 78-203 (207)
74 2dkw_A Hypothetical protein KI 99.8 2.8E-19 9.7E-24 165.1 12.2 99 457-567 11-114 (131)
75 3lqh_A Histone-lysine N-methyl 99.3 1.2E-11 4E-16 120.1 9.8 91 275-382 77-167 (183)
76 3lqh_A Histone-lysine N-methyl 99.2 3.1E-11 1.1E-15 117.1 10.4 92 459-568 76-167 (183)
77 1fp0_A KAP-1 corepressor; PHD 32.6 18 0.0006 30.4 1.7 14 24-37 58-71 (88)
78 2ku3_A Bromodomain-containing 31.4 6.4 0.00022 31.7 -1.2 15 25-39 53-67 (71)
79 1mm2_A MI2-beta; PHD, zinc fin 27.9 11 0.00038 29.1 -0.3 15 24-38 42-56 (61)
80 1f62_A Transcription factor WS 27.3 12 0.00042 27.5 -0.2 14 24-37 36-49 (51)
81 2lri_C Autoimmune regulator; Z 27.1 13 0.00045 29.4 -0.0 16 23-38 44-59 (66)
82 2l43_A N-teminal domain from h 25.2 13 0.00045 31.0 -0.4 14 25-38 62-75 (88)
83 2l5u_A Chromodomain-helicase-D 24.0 16 0.00053 28.3 -0.1 14 24-37 44-57 (61)
84 1wev_A Riken cDNA 1110020M19; 23.1 11 0.00039 31.4 -1.2 15 24-38 58-72 (88)
85 2puy_A PHD finger protein 21A; 21.1 18 0.00061 27.7 -0.3 15 24-38 38-52 (60)
No 1
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=100.00 E-value=3e-45 Score=383.22 Aligned_cols=265 Identities=22% Similarity=0.349 Sum_probs=193.5
Q ss_pred CCCCCCccccccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHH----HHHHHHHHhhhhhcCCccc
Q psy15468 49 DCATLPPKRFIMG-KRRRASSLTRSVDDDDDSSSHTSETPTMQTRPKRKKIDPSDAM----QQIYDVIRNFKKEDGALLC 123 (653)
Q Consensus 49 ~~~~~~~~~~~~~-krr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~i~~~k~~~~~~~~ 123 (653)
+..+..||..+.+ ||||.++.++ +|.... +.+..+||+.+|...+ ..|++.|.++ ..+
T Consensus 3 ~~~~~~~k~~~~~kk~rr~~~~~~-----~d~~~~------~~~~~~rr~~~p~~~l~~~~~~il~~l~~~------~~a 65 (292)
T 3aad_A 3 HMVLKFPKQQLPPKKKRRVGTTVH-----CDYLNR------PHKSIHRRRTDPMVTLSSILESIINDMRDL------PNT 65 (292)
T ss_dssp -------------CCCCCSSCSCC-----CCC------------------CCHHHHHHHHHHHHHHHHSSS------TTC
T ss_pred ceEEecchhhcCccccCCCCCCCC-----CccccC------CcccccccccChHHHHHHHHHHHHHHHHhC------Ccc
Confidence 3455668887655 5556555543 333311 2345677888886544 5555555544 349
Q ss_pred cccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHHHhhhcccCcCCCHHHHHHHH
Q psy15468 124 DPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADI 203 (653)
Q Consensus 124 ~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D~ 203 (653)
+||+.||+...+||||+||++||||+||++||+++. |.++.+|.+|+
T Consensus 66 ~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~---------------------------------Y~s~~~f~~D~ 112 (292)
T 3aad_A 66 YPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRL---------------------------------YPSREEFREHL 112 (292)
T ss_dssp GGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC---------------------------------CSSHHHHHHHH
T ss_pred hhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCC---------------------------------cCCHHHHHHHH
Confidence 999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccCCCcccCCCCCCCCChHHHHHHHHHHH
Q psy15468 204 ELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQNQCEDLFN 283 (653)
Q Consensus 204 ~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ss~~~~~~~~~~~~ll~ 283 (653)
+|||+||..||+++|.++.+|..|.+.|.+.+.++... .....+.+.+..+ +++...|..+++
T Consensus 113 ~li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~~----~~~~e~~i~Pl~d-------------d~~~~~~~~~l~ 175 (292)
T 3aad_A 113 ELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK----LARLEKAINPLLD-------------DDDQVAFSFILD 175 (292)
T ss_dssp HHHHHHHHHHTCSSSHHHHHHTHHHHTTTTTGGGSHHH----HHHHHHTTSSSTT-------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHhhhhcchhh----hhhhhhccccccc-------------cchhHHHHHHHH
Confidence 99999999999999999999999999988877654110 0000011111111 122345666677
Q ss_pred HHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHH
Q psy15468 284 AVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYK 363 (653)
Q Consensus 284 ~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~S~i~~ 363 (653)
.+...+- .++..+++|+.||+...+||||++|++||||+||++||++|.|.++++|..||+|||.||++||+++|.||.
T Consensus 176 ~i~~~~l-~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~ 254 (292)
T 3aad_A 176 NIVTQKM-MAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTK 254 (292)
T ss_dssp HHHHHTG-GGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHhhhhh-hcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 6654321 245679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy15468 364 DAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 364 ~A~~L~~~~~~~~~~i~~ 381 (653)
+|..|+++|...+.++..
T Consensus 255 ~A~~L~~~~~~~~~~~~~ 272 (292)
T 3aad_A 255 TAQEIVNVCYQTLTEYDE 272 (292)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887753
No 2
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=100.00 E-value=2.1e-44 Score=372.26 Aligned_cols=232 Identities=22% Similarity=0.383 Sum_probs=191.4
Q ss_pred CCCCCCChH----HHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHH
Q psy15468 93 PKRKKIDPS----DAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQA 168 (653)
Q Consensus 93 ~~~~~~~~~----~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~ 168 (653)
.+||+.+|. .+|..|++.|..++ .++||..||+...+||||+||++||||+||++||++|.
T Consensus 4 ~~Rrr~~~~~~l~~~l~~il~~l~~~~------~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~--------- 68 (265)
T 3uv5_A 4 IHRRRTDPMVTLSSILESIINDMRDLP------NTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRL--------- 68 (265)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHTST------TCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC---------
T ss_pred ccccccCcHHHHHHHHHHHHHHHHcCC------CchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCC---------
Confidence 345556554 44555666666554 39999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCcc
Q psy15468 169 DIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTS 248 (653)
Q Consensus 169 d~~l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 248 (653)
|.++++|..||+|||+||..||+++|.++++|..|.+.|...+.++...- ..
T Consensus 69 ------------------------Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~~~----~~ 120 (265)
T 3uv5_A 69 ------------------------YPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKL----AR 120 (265)
T ss_dssp ------------------------CSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHH----HH
T ss_pred ------------------------CCCHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHHHHhhhh----hh
Confidence 99999999999999999999999999999999999999999887752100 00
Q ss_pred ccccccccCCCcccCCCCCCCCChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHH
Q psy15468 249 QKRSMDFMMASETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARR 328 (653)
Q Consensus 249 ~~r~~~~~~~~~~~~~~~ss~~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~k 328 (653)
..+.+.+..++ ++...+..++..|...+- ..++.+++|+.||+...+|+||++|++||||+||++|
T Consensus 121 ~ek~i~p~~dd-------------~~~~~~~~il~~i~~~~l-~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~k 186 (265)
T 3uv5_A 121 LEKAINPLLDD-------------DDQVAFSFILDNIVTQKM-MAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKN 186 (265)
T ss_dssp HHHHHSTTTTC-------------HHHHHHHHHHHHHHHHTT-TTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHH
T ss_pred hhhhhhhcccc-------------chhhHHHHHHHHHHHHHH-HhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHH
Confidence 11112222111 234567777777665432 3456799999999999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 329 IQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 329 l~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
|++|.|.++++|..||+|||.||++||+++|.||.+|..|.++|...+.++..
T Consensus 187 l~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~~ 239 (265)
T 3uv5_A 187 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 239 (265)
T ss_dssp HHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988753
No 3
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=100.00 E-value=1.2e-42 Score=373.50 Aligned_cols=216 Identities=24% Similarity=0.410 Sum_probs=177.2
Q ss_pred HHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHHHh
Q psy15468 106 QIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQ 185 (653)
Q Consensus 106 ~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~~~ 185 (653)
.++..+.....+.|+.+|++|+.||++..+||||+||++||||+||++|| +.|
T Consensus 81 ~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y------------------------- 133 (361)
T 2r10_A 81 RFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEY------------------------- 133 (361)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCS-------------------------
T ss_pred HHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hcc-------------------------
Confidence 44444444444567788999999999999999999999999999999998 562
Q ss_pred hhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccCCCcccCCC
Q psy15468 186 QKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDSR 265 (653)
Q Consensus 186 ~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 265 (653)
|.++++|.+||+|||+||..||+++|.++++|..|+++|.+.|.+.-.... .
T Consensus 134 -------~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~k~~~~--------~------------- 185 (361)
T 2r10_A 134 -------EDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKR--------N------------- 185 (361)
T ss_dssp -------TTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHHHHHHHHHHHHTTTT--------C-------------
T ss_pred -------CCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccccCC--------c-------------
Confidence 338999999999999999999999999999999999999998875411000 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHhcc----------------CCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHh
Q psy15468 266 DSSICTEDEQNQCEDLFNAVMTST----------------DADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRI 329 (653)
Q Consensus 266 ~ss~~~~~~~~~~~~ll~~l~~~~----------------d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl 329 (653)
....++....+..+++.|.... ..+++.++++|+.||+...+||||+||++||||+||++||
T Consensus 186 --~~i~~~~k~~l~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl 263 (361)
T 2r10_A 186 --YLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNL 263 (361)
T ss_dssp --CBCCHHHHHHHHHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHH
T ss_pred --CcCCHHHHHHHHHHHHHhhccchHHHHHHHhccccccccccCCcchhcccCCCChhhcccHHHHhcCcccHHHHHHHH
Confidence 0001122223333333333211 1257889999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q psy15468 330 QDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKME 378 (653)
Q Consensus 330 ~~~~Y~s~~ef~~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~ 378 (653)
++|.|.++++|..||+|||.||++||+++|.||.+|..|+++|+..+.+
T Consensus 264 ~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 312 (361)
T 2r10_A 264 EIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 312 (361)
T ss_dssp HHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998886
No 4
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=100.00 E-value=3.3e-41 Score=348.44 Aligned_cols=225 Identities=24% Similarity=0.385 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhh
Q psy15468 274 EQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACT 353 (653)
Q Consensus 274 ~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~ 353 (653)
....|..|++.|.++.. +++|..||+...+|+||++|++||||+||++||++|.|.++++|..||+|||+||++
T Consensus 15 l~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (265)
T 3uv5_A 15 LSSILESIINDMRDLPN------TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSAT 88 (265)
T ss_dssp HHHHHHHHHHHHHTSTT------CGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC------chhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhh
Confidence 46789999999998765 999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCchhhhhcCCCCCCCCCCcccccCCCCCCCc
Q psy15468 354 FNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPL 433 (653)
Q Consensus 354 yN~~~S~i~~~A~~L~~~~~~~~~~i~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~e~~~~sd~e~~~~~~~~~P~ 433 (653)
||+++|.|+.+|..|.++|.+.+.++.... .+..+ .. ... .+++
T Consensus 89 yN~~~s~i~~~A~~l~~~~~~~~~~~~~~~-------~~~ek----------~i----~p~----~dd~----------- 132 (265)
T 3uv5_A 89 YNGPKHSLTQISQSMLDLCDEKLKEKEDKL-------ARLEK----------AI----NPL----LDDD----------- 132 (265)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHH-------HHHHH----------HH----STT----TTCH-----------
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHhhhh-------hhhhh----------hh----hhc----cccc-----------
Confidence 999999999999999999999988765321 00000 00 000 0000
Q ss_pred hhhhhhhhccccCCcccccccCCHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHH
Q psy15468 434 WQVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIAS 513 (653)
Q Consensus 434 ~~~~~~ir~~~~~g~~~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~ 513 (653)
-...+..++..|...+- .. ++.+++|..||+...+||||++|++||||++|++
T Consensus 133 -------------------------~~~~~~~il~~i~~~~l-~~-~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~ 185 (265)
T 3uv5_A 133 -------------------------DQVAFSFILDNIVTQKM-MA-VPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRK 185 (265)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTT-TT-STTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHH
T ss_pred -------------------------hhhHHHHHHHHHHHHHH-Hh-hhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHH
Confidence 01112223333322111 11 5679999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 514 KLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 514 kl~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
||++|.|.++++|..||+|||.||++||+++|.+|.+|..|+++|.+.+.++..
T Consensus 186 kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~~~~~~~~~ 239 (265)
T 3uv5_A 186 NISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 239 (265)
T ss_dssp HHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887764
No 5
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=100.00 E-value=3.7e-42 Score=362.10 Aligned_cols=204 Identities=25% Similarity=0.448 Sum_probs=171.6
Q ss_pred hcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchHHHHhhhcccCcCC-C
Q psy15468 117 EDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYD-D 195 (653)
Q Consensus 117 ~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~~~~~~~~~~~~Y~-~ 195 (653)
+.|+.+|++|++||++..+||||+||++||||+||++|| +. |. +
T Consensus 42 ~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~---------------------------------y~~s 86 (311)
T 2r0y_A 42 DKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YE---------------------------------YEDG 86 (311)
T ss_dssp HHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CC---------------------------------STTH
T ss_pred HcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hc---------------------------------ccCC
Confidence 367889999999999999999999999999999999998 56 54 8
Q ss_pred HHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccCCCcccCCCCCCCCChHHH
Q psy15468 196 LSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQ 275 (653)
Q Consensus 196 ~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ss~~~~~~~ 275 (653)
+++|.+||+|||+||..||+++|.++++|.+|+++|.+.+.+.-.. .+. .. ..++..
T Consensus 87 ~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~k~~--------~~~-----~~----------i~~~~k 143 (311)
T 2r0y_A 87 PSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNL--------KRN-----YL----------INSEVK 143 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHTG--------GGC-----CB----------CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhhcccC--------CCC-----CC----------CChHHH
Confidence 9999999999999999999999999999999999999987764110 000 00 001112
Q ss_pred HHHHHHHHHHHhc---------------cC-CCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHH
Q psy15468 276 NQCEDLFNAVMTS---------------TD-ADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGD 339 (653)
Q Consensus 276 ~~~~~ll~~l~~~---------------~d-~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~e 339 (653)
+.+..+++.|... ++ .+++.++++|++||++..+|+||++|++||||+||++||++|.|.++++
T Consensus 144 ~~l~~~~~~l~~~~~~~i~~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~e 223 (311)
T 2r0y_A 144 AKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYD 223 (311)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHGGGSCSSCCCSSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccccccCCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHH
Confidence 2222333333211 11 2578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHh
Q psy15468 340 MEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKME 378 (653)
Q Consensus 340 f~~Dv~Lmf~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~ 378 (653)
|.+||+|||.||++||+++|.||.+|..|+++|+..+++
T Consensus 224 f~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~ 262 (311)
T 2r0y_A 224 FIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQK 262 (311)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998886
No 6
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=100.00 E-value=1.1e-40 Score=350.90 Aligned_cols=232 Identities=22% Similarity=0.374 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCC-CHHHHHHHHHHHHHhhhhh
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYA-SLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~Lmf~Na~~y 354 (653)
..+..+|..+.+ +|+.++++|++||++..+||||++|++||||+||++|| +.|. ++++|..||+|||+||++|
T Consensus 31 ~~~~~~L~~~~~----~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~y 104 (311)
T 2r0y_A 31 RFISFTLDVLID----KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 104 (311)
T ss_dssp HHHHHHHHHHHH----HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHc
Confidence 445555665553 58899999999999999999999999999999999998 5665 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCchhhhhcCCCCCCCCCCcccccCCCCCCCch
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLW 434 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~i~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~e~~~~sd~e~~~~~~~~~P~~ 434 (653)
|+++|.||.+|..|+++|.+.|.+.... . ++... + +.. .....
T Consensus 105 N~~~s~i~~~A~~l~~~~~~~~~k~k~~-----------~-~~~~i--~----------------~~~-------k~~l~ 147 (311)
T 2r0y_A 105 NEYDSLIVKNSMQVVMLIEFEVLKAKNL-----------K-RNYLI--N----------------SEV-------KAKLL 147 (311)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHTG-----------G-GCCBC--C----------------HHH-------HHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhcccC-----------C-CCCCC--C----------------hHH-------HHHHH
Confidence 9999999999999999999988764210 0 00000 0 000 00000
Q ss_pred hhhhhhhccccCCcccccccCCHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHH
Q psy15468 435 QVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASK 514 (653)
Q Consensus 435 ~~~~~ir~~~~~g~~~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~k 514 (653)
....++... ..+.+..++...+..++..+++.++++|++||+...+|+||++|++||||+||++|
T Consensus 148 ~~~~~l~~~---------------~~~~i~~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~k 212 (311)
T 2r0y_A 148 HYLNKLVDA---------------TEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQN 212 (311)
T ss_dssp HHHHHHHHC---------------CHHHHHHHHHGGGSCSSCCCSSCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHHHhh---------------hHHHHHHHHhccccccccccCCccHHHHhCCCChhhcccHHHHhCCccCHHHHHHH
Confidence 000000000 00111111111122222223488999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 515 LRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHL 565 (653)
Q Consensus 515 l~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL 565 (653)
|++|.|.++++|.+||+|||.||++||+++|.||.+|..|+++|++.+++.
T Consensus 213 l~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 263 (311)
T 2r0y_A 213 LEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 263 (311)
T ss_dssp HHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988863
No 7
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=100.00 E-value=1.6e-40 Score=357.02 Aligned_cols=232 Identities=22% Similarity=0.373 Sum_probs=177.0
Q ss_pred HHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCC-CHHHHHHHHHHHHHhhhhh
Q psy15468 276 NQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYA-SLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 276 ~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~-s~~ef~~Dv~Lmf~Na~~y 354 (653)
..|..+++.+.+ .|+.++++|+.||++..+||||+||++||||+||++|| +.|. ++++|..||+|||+||++|
T Consensus 81 ~~~~~~l~~l~~----~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~y 154 (361)
T 2r10_A 81 RFISFTLDVLID----KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAY 154 (361)
T ss_dssp HHHHHHHHHHHH----HTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhc
Confidence 456666666654 57889999999999999999999999999999999998 5555 8999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCchhhhhcCCCCCCCCCCcccccCCCCCCCch
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLW 434 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~i~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~e~~~~sd~e~~~~~~~~~P~~ 434 (653)
|+++|.||.+|..|+++|...|.+..... . +.. .+ ++. .....
T Consensus 155 N~~~s~i~~~a~~l~~~~~~~~~k~k~~~--~----------~~~--i~----------------~~~-------k~~l~ 197 (361)
T 2r10_A 155 NEYDSLIVKNSMQVVMLIEFEVLKAKNLK--R----------NYL--IN----------------SEV-------KAKLL 197 (361)
T ss_dssp BCSSSHHHHHHHHHHHHHHHHHHHHHTTT--T----------CCB--CC----------------HHH-------HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhccccC--C----------cCc--CC----------------HHH-------HHHHH
Confidence 99999999999999999999887642110 0 000 00 000 00000
Q ss_pred hhhhhhhccccCCcccccccCCHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHH
Q psy15468 435 QVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASK 514 (653)
Q Consensus 435 ~~~~~ir~~~~~g~~~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~k 514 (653)
.....+... ....+...+...+..++..+++.++++|++||+...+||||++|++||||++|++|
T Consensus 198 ~~~~~l~~~---------------~~~~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~k 262 (361)
T 2r10_A 198 HYLNKLVDA---------------TEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQN 262 (361)
T ss_dssp HHHHHHHHC---------------CHHHHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHH
T ss_pred HHHHHhhcc---------------chHHHHHHHhccccccccccCCcchhcccCCCChhhcccHHHHhcCcccHHHHHHH
Confidence 000000000 00011111111111122223488999999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhh
Q psy15468 515 LRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHL 565 (653)
Q Consensus 515 l~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL 565 (653)
|++|.|.++++|.+||+|||.||++||+++|.||.+|..|+++|++.+.+.
T Consensus 263 l~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 313 (361)
T 2r10_A 263 LEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKE 313 (361)
T ss_dssp HHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988863
No 8
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-40 Score=344.75 Aligned_cols=224 Identities=24% Similarity=0.387 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
...|..|++.|+++.. +++|+.||+...+|+||++|++||||+||++||++|.|.++++|..||+|||+||.+|
T Consensus 49 ~~~~~~il~~l~~~~~------a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 49 SSILESIINDMRDLPN------TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHSSSTT------CGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc------chhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 5778889998887654 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccccccccCCCCchhhhhcCCCCCCCCCCcccccCCCCCCCch
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLW 434 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~i~~~~~~~~~k~~r~~~~~~~~~~~~~~~~~~~~~e~~~~sd~e~~~~~~~~~P~~ 434 (653)
|+++|.|+.+|..|.++|...+.++.... .+..+ ..... .+++ +
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~~~~~-------~~~e~--------------~i~Pl----~dd~---------~-- 166 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEKEDKL-------ARLEK--------------AINPL----LDDD---------D-- 166 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGSHHHH-------HHHHH--------------TTSSS----TTCH---------H--
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcchhhh-------hhhhh--------------ccccc----cccc---------h--
Confidence 99999999999999999987766543210 00000 00000 0000 0
Q ss_pred hhhhhhhccccCCcccccccCCHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHH
Q psy15468 435 QVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASK 514 (653)
Q Consensus 435 ~~~~~ir~~~~~g~~~~~s~~~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~k 514 (653)
+..+..+++.+...+- .. +..+++|..+|+...+||||++|++||||++|++|
T Consensus 167 -------------------------~~~~~~~l~~i~~~~l-~~-~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~k 219 (292)
T 3aad_A 167 -------------------------QVAFSFILDNIVTQKM-MA-VPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKN 219 (292)
T ss_dssp -------------------------HHHHHHHHHHHHHHTG-GG-STTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHH
T ss_pred -------------------------hHHHHHHHHHHhhhhh-hc-CcchhHHHhcccccccccHHHHcCCcCCHHHHHHH
Confidence 0012223333221100 11 56799999999999999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 515 LRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 515 l~~~~Y~s~~ef~~D~~Lmf~Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
|++|.|.|+++|.+||+|||.||++||+++|.+|.+|..|+++|.+.+.++..
T Consensus 220 l~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~~~~~~~~~~~ 272 (292)
T 3aad_A 220 ISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 272 (292)
T ss_dssp HHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887653
No 9
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=1.6e-26 Score=211.77 Aligned_cols=112 Identities=39% Similarity=0.675 Sum_probs=107.0
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTK 349 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~ 349 (653)
......+.|..|++.|++++|..|++++++|.+||++..+|+||++|++||||+||++||+++.|.++++|.+||+|||.
T Consensus 10 ~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 10 NPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 350 NACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 350 Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
||++||+++|.||.+|..|+++|++.+++++.
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999988764
No 10
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.94 E-value=6.7e-27 Score=212.13 Aligned_cols=112 Identities=47% Similarity=0.861 Sum_probs=107.8
Q ss_pred CChHHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcC
Q psy15468 98 IDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTN 177 (653)
Q Consensus 98 ~~~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~ 177 (653)
.++...|..|++.|+++++++|++++++|.+||++..+||||+||++||||+||++||+++.
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~------------------ 65 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEE------------------ 65 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCC------------------
Confidence 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCCC
Q psy15468 178 PIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQ 242 (653)
Q Consensus 178 P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~ 242 (653)
|.++++|..|++|||+||..||+++|.++++|.+|++.|.+.++++.+.|
T Consensus 66 ---------------Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~g 115 (116)
T 3iu5_A 66 ---------------YDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQKG 115 (116)
T ss_dssp ---------------CCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999987754
No 11
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=1.6e-26 Score=212.10 Aligned_cols=112 Identities=48% Similarity=0.856 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15468 456 TAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFD 535 (653)
Q Consensus 456 ~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~ 535 (653)
.++++++|+.|++.|+++++..| ++++++|.+||+...+||||++|++||||++|++||+++.|.++++|.+||+|||.
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g-~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 91 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRG-RRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFN 91 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTS-CBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccC-CcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy15468 536 NACKYNEPDSHIYKDALSLQRIVLQTKMHLRED 568 (653)
Q Consensus 536 Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~~ 568 (653)
||++||+++|.+|.+|..|+++|+++++++..+
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~d 124 (124)
T 3mb4_A 92 NACTYNEPESLIYKDALVLHKVLLETRRDLEGD 124 (124)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998753
No 12
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=2.3e-26 Score=208.58 Aligned_cols=110 Identities=30% Similarity=0.523 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhh
Q psy15468 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNA 351 (653)
Q Consensus 272 ~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na 351 (653)
.++.+.|..|++.|++++|++|++++++|.+||++..+|+||++|++||||+||++||++|.|.++++|..||+|||.||
T Consensus 4 ~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 83 (116)
T 3iu5_A 4 VDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNA 83 (116)
T ss_dssp CCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 352 CTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 352 ~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
++||+++|.+|.+|..|+++|++.+.++.+
T Consensus 84 ~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 84 KSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998865
No 13
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=3.9e-26 Score=208.29 Aligned_cols=111 Identities=49% Similarity=0.791 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhh
Q psy15468 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNA 351 (653)
Q Consensus 272 ~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na 351 (653)
+.....|+.|++.|+++++++|++++++|.+||++..+|+||++|++||||+||++||++|.|.++++|..||+|||.||
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 86 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNA 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 352 CTFNEPGSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 352 ~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
+.||+++|.||.+|..|+++|++++++++..
T Consensus 87 ~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 87 KTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999988753
No 14
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=8.3e-26 Score=207.30 Aligned_cols=110 Identities=35% Similarity=0.648 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhh
Q psy15468 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNA 351 (653)
Q Consensus 272 ~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na 351 (653)
....+.|..|++.|+++++++|++++++|..||++..+|+||++|++||||+||++||+++.|.++++|..||+|||.||
T Consensus 14 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 93 (124)
T 3mb4_A 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNA 93 (124)
T ss_dssp CHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 352 CTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 352 ~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
++||+++|.||.+|..|+++|++.++++..
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 94 CTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998753
No 15
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.93 E-value=1e-25 Score=206.47 Aligned_cols=110 Identities=32% Similarity=0.583 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~N 536 (653)
..+++.|+.|++.|++++|..| +.++++|.+||++..+||||++|++||||++|++||+++.|.++++|.+||+|||.|
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g-~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 90 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSG-RQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHN 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSS-CBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccC-CeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 537 ACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 537 a~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
|++||+++|.+|.+|..|+++|++.+++++.
T Consensus 91 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 91 AQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998864
No 16
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=9.1e-26 Score=208.52 Aligned_cols=111 Identities=36% Similarity=0.618 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhh
Q psy15468 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNA 351 (653)
Q Consensus 272 ~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na 351 (653)
.....+|..|++.|+++++.+|++++++|.+||++..+|+||++|++||||+||++||+++.|.++++|..||+|||.||
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENA 95 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 352 CTFNEPGSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 352 ~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
++||+++|.||.+|..|+++|++.++++...
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 96 KRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988643
No 17
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=1.4e-25 Score=206.34 Aligned_cols=110 Identities=23% Similarity=0.379 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~N 536 (653)
..+++.|+.|++.|++++|+.| ++++++|.+||++..+||||++|++||||++|++||++|.|.++++|.+||+|||.|
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g-~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 86 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSR-QALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRN 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTC-CBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCC-CChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999988 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 537 ACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 537 a~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
|++||+++|.+|++|..|+++|.++++++..
T Consensus 87 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 87 AEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887754
No 18
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.92 E-value=1.6e-25 Score=204.31 Aligned_cols=110 Identities=34% Similarity=0.635 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~N 536 (653)
..|+..|+.+++.|+++++..| ++++++|.+||++..+|+||++|++||||++|++||.+|.|.++++|.+||+|||.|
T Consensus 7 ~~l~~~~~~ll~~l~~~~d~~g-~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 7 AYLKEILEQLLEAIVVATNPSG-RLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTS-CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCC-CcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 3578899999999999999988 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 537 ACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 537 a~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
|++||+++|.+|++|..|+++|++++.++..
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~ 116 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999998763
No 19
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=206.40 Aligned_cols=107 Identities=23% Similarity=0.420 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhh
Q psy15468 274 EQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACT 353 (653)
Q Consensus 274 ~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~ 353 (653)
..+.|+.|++.|++++|++|++++++|.+||++..+||||++|++||||+||++||++|.|.++++|.+||+|||.||++
T Consensus 10 l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 89 (126)
T 3mqm_A 10 LAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEK 89 (126)
T ss_dssp HHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 354 FNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 354 yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
||+++|.+|.+|..|+++|++.+.++.
T Consensus 90 yN~~~s~~~~~A~~L~~~f~~~~~~~~ 116 (126)
T 3mqm_A 90 YYGRKSPVGRDVCRLRKAYYNARHEAS 116 (126)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888764
No 20
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.92 E-value=2.1e-25 Score=205.98 Aligned_cols=113 Identities=39% Similarity=0.680 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHHHHHHhccCC-CCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDA-DSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMT 348 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~-~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf 348 (653)
.+....+.|..||+.|++++++ +|+.++++|..||++..+|+||++|++||||+||++||++|.|.++++|.+||+|||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3455689999999999999875 799999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 349 KNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 349 ~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
.||++||+++|.||.+|..|+++|++.+.+++..
T Consensus 88 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999988654
No 21
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.92 E-value=2.5e-25 Score=205.61 Aligned_cols=110 Identities=35% Similarity=0.635 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~N 536 (653)
..+..+|+.|++.|+++++..| ++++++|.+||++..+|+||++|++||||++|++||+++.|.|+++|.+||+|||.|
T Consensus 16 ~kl~~~~~~l~~~l~~~~d~~g-~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (130)
T 3k2j_A 16 ENLYFQSMQLYDTVRSCRNNQG-QLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFEN 94 (130)
T ss_dssp HHHHHHHHHHHHHHHTCBCSSS-CBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccC-CCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999988 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 537 ACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 537 a~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
|++||+++|.+|++|..|+++|++.+.++..
T Consensus 95 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 125 (130)
T 3k2j_A 95 AKRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998864
No 22
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.92 E-value=3e-25 Score=204.91 Aligned_cols=113 Identities=32% Similarity=0.635 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15468 456 TAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFD 535 (653)
Q Consensus 456 ~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~ 535 (653)
...+++.|..|++.|.+++++.+++.++++|..||+...+|+||++|++||||++|++||++|.|.|+++|.+||+|||.
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~ 88 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQ 88 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999988644599999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy15468 536 NACKYNEPDSHIYKDALSLQRIVLQTKMHLRED 568 (653)
Q Consensus 536 Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~~ 568 (653)
||++||+++|.+|.+|..|+++|.+.+++|..+
T Consensus 89 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 89 NAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999764
No 23
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.91 E-value=1.4e-24 Score=197.20 Aligned_cols=112 Identities=23% Similarity=0.453 Sum_probs=103.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHH
Q psy15468 90 QTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQAD 169 (653)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d 169 (653)
.++++|........|..|++.|..++. ++||..||+...+||||+||++||||+||++||++|.
T Consensus 4 ~~k~~~~~~~~~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~---------- 67 (117)
T 3g0l_A 4 VKKPKRDDSKDLALCSMILTEMETHED------AWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQ---------- 67 (117)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHHHTSTT------CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC----------
T ss_pred CcCCCcCCHHHHHHHHHHHHHHHhCCC------chhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCC----------
Confidence 345556666788999999999998754 9999999999999999999999999999999999999
Q ss_pred HHHHhhcCCchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccC
Q psy15468 170 IELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLN 240 (653)
Q Consensus 170 ~~l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~ 240 (653)
|.++++|..|++|||.||..||+++|.++++|..|.+.|++.++++++
T Consensus 68 -----------------------Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 68 -----------------------YPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp -----------------------CCSHHHHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----------------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999998764
No 24
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=2.7e-25 Score=210.50 Aligned_cols=109 Identities=26% Similarity=0.512 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHHHhhhh-hcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcC
Q psy15468 99 DPSDAMQQIYDVIRNFKK-EDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTN 177 (653)
Q Consensus 99 ~~~~~~~~l~~~i~~~k~-~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~ 177 (653)
-..+.|+.|++.|.++++ .+|+.++++|..||++..+||||+||++||||+||++||+++.
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~------------------ 85 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDK------------------ 85 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTC------------------
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCC------------------
Confidence 457889999999999985 5789999999999999999999999999999999999999999
Q ss_pred CchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccC
Q psy15468 178 PIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLN 240 (653)
Q Consensus 178 P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~ 240 (653)
|.++++|..||+|||+||..||+++|.++++|..|.+.|.+.+.++..
T Consensus 86 ---------------Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 86 ---------------YAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp ---------------CSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999998854
No 25
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.91 E-value=5.4e-24 Score=193.26 Aligned_cols=105 Identities=27% Similarity=0.389 Sum_probs=99.5
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTK 349 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~ 349 (653)
....+.+.|..|++.|+++.+ +++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.
T Consensus 10 ~~~~~~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~ 83 (117)
T 3g0l_A 10 DDSKDLALCSMILTEMETHED------AWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFD 83 (117)
T ss_dssp CCTTHHHHHHHHHHHHHTSTT------CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCC------chhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 345678999999999998865 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 350 NACTFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 350 Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
||..||+++|.++.+|..|+++|++.|+++.
T Consensus 84 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 84 NCETFNEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp HHHHHSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998864
No 26
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.90 E-value=7.3e-24 Score=190.96 Aligned_cols=102 Identities=26% Similarity=0.358 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 273 DEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 273 ~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
.....|..|++.|.++.. +++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.||+
T Consensus 7 ~l~~~~~~il~~l~~~~~------~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 80 (112)
T 3d7c_A 7 QLYTTLKNLLAQIKSHPS------AWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCR 80 (112)
T ss_dssp HHHHHHHHHHHHHHHSGG------GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC------chhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHH
Confidence 346889999999998754 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 353 TFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 353 ~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
+||+++|.+|.+|..|++.|++.++++.
T Consensus 81 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 81 EYNPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999998765
No 27
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.90 E-value=8.8e-24 Score=200.08 Aligned_cols=109 Identities=38% Similarity=0.735 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy15468 459 SLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNAC 538 (653)
Q Consensus 459 ~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~ 538 (653)
-+++|+.|++.|.++.++..++.++.+|..+|++..+||||++|++||||++|++||++|.|.++++|.+||+|||.||+
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 104 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNAR 104 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999987554499999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 539 KYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 539 ~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
+||+++|.+|.+|..|+++|++.+.++..
T Consensus 105 ~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 105 HYNEEGSQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999999999999974
No 28
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.90 E-value=7.5e-24 Score=195.79 Aligned_cols=108 Identities=17% Similarity=0.369 Sum_probs=99.2
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCcccccccccccccC--CCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q psy15468 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKK--RYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMT 348 (653)
Q Consensus 271 ~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~--~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf 348 (653)
..++.+.|..||+.|+.+++ ..++++|+.||+.. ++|+||++|++||||+||++||++|.|.++++|.+||+|||
T Consensus 20 ~~~~l~~c~~il~~L~~~~~---~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 96 (130)
T 2ouo_A 20 VSEQLKCCSGILKEMFAKKH---AAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMF 96 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGG---HHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhCCc---chhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34568899999999998753 35789999999865 59999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 349 KNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 349 ~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
.||++||+++|.||.+|..|+++|++.+++++.
T Consensus 97 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 97 SNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999998764
No 29
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.90 E-value=5.7e-24 Score=193.95 Aligned_cols=110 Identities=16% Similarity=0.352 Sum_probs=101.2
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccCC--CCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKR--YPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILM 347 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~--~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lm 347 (653)
....+.+.|..|+..|..++ +..++++|..||+... +|+||++|++||||+||++||++|.|.++++|..||+||
T Consensus 6 ~~~~~l~~c~~il~~l~~~~---~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 82 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKK---HAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLM 82 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGG---GHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCc---CccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 34567899999999998874 3567999999999876 999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 348 TKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 348 f~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
|.||++||+++|.|+.+|..|+++|++.+.+++..
T Consensus 83 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 83 FSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999999999988653
No 30
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.90 E-value=5.1e-24 Score=196.92 Aligned_cols=112 Identities=21% Similarity=0.330 Sum_probs=99.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhhhhhcCCccccccccCCCCC--CCCccccccCCccchHHHHHHHhcCCCCChhhHHHHH
Q psy15468 93 PKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKR--QEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADI 170 (653)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~--~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~ 170 (653)
++++..+.+..|..||+.|.+++.. .+|+||+.||+.. .+||||+||++||||+||++||++|.
T Consensus 16 k~~~~~~~l~~c~~il~~L~~~~~~---~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~----------- 81 (130)
T 2ouo_A 16 KSSKVSEQLKCCSGILKEMFAKKHA---AYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE----------- 81 (130)
T ss_dssp ---CHHHHHHHHHHHHHHHTSGGGH---HHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTC-----------
T ss_pred CCcccHHHHHHHHHHHHHHHhCCcc---hhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCC-----------
Confidence 3444457788999999999887642 3589999999864 59999999999999999999999999
Q ss_pred HHHhhcCCchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccC
Q psy15468 171 ELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLN 240 (653)
Q Consensus 171 ~l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~ 240 (653)
|.++++|.+||+|||+||.+||+++|.++++|..|.+.|.+.+.++..
T Consensus 82 ----------------------Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 82 ----------------------YRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp ----------------------CSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999988753
No 31
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.90 E-value=2.3e-23 Score=187.65 Aligned_cols=103 Identities=27% Similarity=0.415 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~N 536 (653)
..|...|..+++.|++ +..+++|..||+...+||||++|++||||++|++||++|.|.++++|.+||+|||.|
T Consensus 6 ~~l~~~~~~il~~l~~-------~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~N 78 (112)
T 3d7c_A 6 DQLYTTLKNLLAQIKS-------HPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIAN 78 (112)
T ss_dssp HHHHHHHHHHHHHHHH-------SGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-------CCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHH
Confidence 3678889999999987 567999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy15468 537 ACKYNEPDSHIYKDALSLQRIVLQTKMHLR 566 (653)
Q Consensus 537 a~~YN~~~S~iy~dA~~L~~~~~~~~~eL~ 566 (653)
|++||+++|.+|.+|..|+++|++.+.++.
T Consensus 79 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 79 CREYNPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999998775
No 32
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.90 E-value=2e-23 Score=192.12 Aligned_cols=107 Identities=17% Similarity=0.313 Sum_probs=94.3
Q ss_pred CCCCChHH-HHHHHHHHHHhhhhhcCCccccccccCCCC--CCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHH
Q psy15468 95 RKKIDPSD-AMQQIYDVIRNFKKEDGALLCDPFIRIPKK--RQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIE 171 (653)
Q Consensus 95 ~~~~~~~~-~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~--~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~ 171 (653)
+|..+.+. +|+.|++.|.+++ .+++|..||+. ..+||||+||++||||+||++||++|.
T Consensus 16 ~r~~~~l~~~~~~il~~L~~~~------~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~------------ 77 (127)
T 2oss_A 16 KRQTNQLQYLLRVVLKTLWKHQ------FAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNY------------ 77 (127)
T ss_dssp CCCCHHHHHHHHTHHHHHHTST------TCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTC------------
T ss_pred cccHHHHHHHHHHHHHHHHhCc------cchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCC------------
Confidence 33444443 4566777777654 49999999984 599999999999999999999999999
Q ss_pred HHhhcCCchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccC
Q psy15468 172 LLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLN 240 (653)
Q Consensus 172 l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~ 240 (653)
|.++++|.+|++|||+||..||+++|.++.+|..|++.|.+.+.++..
T Consensus 78 ---------------------Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 125 (127)
T 2oss_A 78 ---------------------YWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPT 125 (127)
T ss_dssp ---------------------CSSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999998854
No 33
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.90 E-value=1.7e-23 Score=191.13 Aligned_cols=102 Identities=25% Similarity=0.429 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhh
Q psy15468 274 EQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACT 353 (653)
Q Consensus 274 ~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~ 353 (653)
....|..|++.|.++. .+++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.||++
T Consensus 14 ~~~~~~~il~~l~~~~------~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 87 (121)
T 1e6i_A 14 HDAAIQNILTELQNHA------AAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRM 87 (121)
T ss_dssp THHHHHHHHHHHHHST------TCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC------CchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3678999999999875 4999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 354 FNEPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 354 yN~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
||+++|.+|.+|..|++.|++++.+++.
T Consensus 88 yN~~~s~i~~~A~~L~~~f~~~~~~~p~ 115 (121)
T 1e6i_A 88 YNGENTSYYKYANRLEKFFNNKVKEIPE 115 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHTSGG
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999988753
No 34
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=192.83 Aligned_cols=107 Identities=21% Similarity=0.441 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~N 536 (653)
..++..+..|+++|.+++|+.| |.+|.+|+++|++. |+||. ++||+|++|++||++|.|.++++|..||.+||.|
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~G-R~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEG-RCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTS-CBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCC-CcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3578889999999999999999 99999999999998 89998 9999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy15468 537 ACKYNEPDSHIYKDALSLQRIVLQTKMHLRED 568 (653)
Q Consensus 537 a~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~~ 568 (653)
|++||.+||+||.||..||++|.+++.+|.++
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999874
No 35
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.89 E-value=3e-23 Score=190.94 Aligned_cols=106 Identities=26% Similarity=0.375 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCccccccccccccc--CCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q psy15468 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSK--KRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMT 348 (653)
Q Consensus 271 ~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~--~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf 348 (653)
.......|..|++.|+++.. +++|..||+. ..+||||++|++||||+||++||++|.|.++++|.+||+|||
T Consensus 19 ~~~l~~~~~~il~~L~~~~~------a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 92 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQF------AWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMF 92 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTT------CGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc------chhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34456677889999987654 9999999985 489999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 349 KNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 349 ~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
.||++||+++|.||.+|..|++.|++++++++.+
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 93 TNCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999988754
No 36
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.89 E-value=1.9e-23 Score=190.70 Aligned_cols=101 Identities=23% Similarity=0.464 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCc
Q psy15468 100 PSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPI 179 (653)
Q Consensus 100 ~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~ 179 (653)
....|..|++.|.+++ .++||..||+...+||||+||++||||+||++||++|.
T Consensus 14 ~~~~~~~il~~l~~~~------~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~-------------------- 67 (121)
T 1e6i_A 14 HDAAIQNILTELQNHA------AAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNK-------------------- 67 (121)
T ss_dssp THHHHHHHHHHHHHST------TCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHHHHHcCC------CchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCC--------------------
Confidence 4688999999998764 49999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhcc
Q psy15468 180 DFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLL 239 (653)
Q Consensus 180 d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~ 239 (653)
|.++++|..|++|||+||..||+++|.++++|..|++.|.+.+.+++
T Consensus 68 -------------Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 68 -------------YQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp -------------CSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTSG
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999998764
No 37
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=4.1e-23 Score=188.52 Aligned_cols=102 Identities=18% Similarity=0.298 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 273 DEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 273 ~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
.....|..||+.|+++.. +++|..||+...+|+||++|++||||+||++||+++.|.++++|.+||+|||.||+
T Consensus 7 pl~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (121)
T 2d9e_A 7 GFLILLRKTLEQLQEKDT------GNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCL 80 (121)
T ss_dssp HHHHHHHHHHHHHHHHCS------SCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCc------cHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 345789999999998765 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 353 TFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 353 ~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
.||+++|.+|.+|..|++.|+..+.++.
T Consensus 81 ~yN~~~s~~~~~A~~L~~~~~~~l~~~~ 108 (121)
T 2d9e_A 81 KYNAKDTIFYRAAVRLREQGGAVLRQAR 108 (121)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887654
No 38
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.89 E-value=3.3e-23 Score=196.76 Aligned_cols=108 Identities=23% Similarity=0.322 Sum_probs=99.2
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccC--CCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKK--RYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILM 347 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~--~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lm 347 (653)
.+......|..|++.|.++.. +++|.+||+.. ++|+||++|++||||+||++||+++.|.++++|.+||+||
T Consensus 29 ~t~~l~~~~~~il~~l~~~~~------a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li 102 (154)
T 4alg_A 29 VTNQLQYLHKVVMKALWKHQF------AWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTM 102 (154)
T ss_dssp CBHHHHHHHHTHHHHHHTSTT------CGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcC------chhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 344556777888899988754 99999999976 7999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q psy15468 348 TKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGK 383 (653)
Q Consensus 348 f~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~~ 383 (653)
|.||++||+++|.||.+|..|+++|++.+++++...
T Consensus 103 f~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 138 (154)
T 4alg_A 103 FTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEE 138 (154)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchh
Confidence 999999999999999999999999999999988665
No 39
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.89 E-value=2.7e-23 Score=188.41 Aligned_cols=101 Identities=20% Similarity=0.393 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhh
Q psy15468 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNA 351 (653)
Q Consensus 272 ~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na 351 (653)
++..+.|..+++.|+++.+ +++|..||+...+|+||++|++||||+||++||++|.|.++++|..||+|||.||
T Consensus 15 ~~~~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 88 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKD------SWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNC 88 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTT------CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC------cHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3457899999999999876 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHh
Q psy15468 352 CTFNEPGSQIYKDAKALKKLVQTKKME 378 (653)
Q Consensus 352 ~~yN~~~S~i~~~A~~L~~~~~~~~~~ 378 (653)
..||+++|.++.+|..|+++|++.+.+
T Consensus 89 ~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 89 RKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988753
No 40
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.89 E-value=3e-23 Score=188.05 Aligned_cols=99 Identities=22% Similarity=0.434 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCc
Q psy15468 100 PSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPI 179 (653)
Q Consensus 100 ~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~ 179 (653)
....|..|++.|.+++. +++|..||+...+||||+||++||||+||++||++|.
T Consensus 17 ~~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~-------------------- 70 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAHKD------SWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGL-------------------- 70 (116)
T ss_dssp HHHHHHHHHHHHHHSTT------CGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHHHHHhCCC------cHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCC--------------------
Confidence 35677788888877654 8999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhh
Q psy15468 180 DFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNK 237 (653)
Q Consensus 180 d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~ 237 (653)
|.++++|..||+|||.||..||+++|.++++|..|.+.|.+.+++
T Consensus 71 -------------Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 71 -------------YCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp -------------CSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998763
No 41
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=189.40 Aligned_cols=104 Identities=30% Similarity=0.509 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 273 DEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 273 ~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
.-.+.|..|++.|+++.+ +++|..||+...+|+||++|++||||+||++||++|.|.++++|..||+|||.||+
T Consensus 10 ~~~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 83 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQCED------SEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAK 83 (123)
T ss_dssp CHHHHHHHHHHHHHTSGG------GGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC------cHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 347889999999999876 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCC-CCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 353 TFNEP-GSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 353 ~yN~~-~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
.||++ +|.||.+|..|+++|++.+.++...
T Consensus 84 ~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 114 (123)
T 3q2e_A 84 AYTPNKRSKIYSMTLRLSALFEEKMKKISSD 114 (123)
T ss_dssp HHSCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 9999999999999999999988643
No 42
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=188.11 Aligned_cols=105 Identities=25% Similarity=0.416 Sum_probs=97.8
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15468 456 TAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFD 535 (653)
Q Consensus 456 ~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~ 535 (653)
..+++..|+.+++.|++ +..+++|.+||+...+|+||++|++||||++|++||+++.|.++++|.+||+|||.
T Consensus 5 ~~pl~~~l~~il~~l~~-------~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~ 77 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQE-------KDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVS 77 (121)
T ss_dssp CCHHHHHHHHHHHHHHH-------HCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHc-------CCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 35788999999999997 44689999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 536 NACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 536 Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
||++||+++|.+|.+|..|++.|...+.++..
T Consensus 78 Na~~yN~~~s~~~~~A~~L~~~~~~~l~~~~~ 109 (121)
T 2d9e_A 78 NCLKYNAKDTIFYRAAVRLREQGGAVLRQARR 109 (121)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888776654
No 43
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.89 E-value=5.1e-23 Score=191.47 Aligned_cols=105 Identities=27% Similarity=0.489 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q psy15468 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKN 350 (653)
Q Consensus 271 ~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~N 350 (653)
...-.+.|..|++.|..+.+ +++|..||+...+||||++|++||||+||++||++|.|.++++|..||+|||.|
T Consensus 19 ~~~l~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCED------SEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSN 92 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGG------GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC------ChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999876 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCC-CCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 351 ACTFNEP-GSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 351 a~~yN~~-~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
|..||++ +|.||.+|..|+++|++.+.++..
T Consensus 93 a~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 124 (135)
T 3mb3_A 93 SKAYTPSKRSRIYSMSLRLSAFFEEHISSVLS 124 (135)
T ss_dssp HHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 999999999999999999988753
No 44
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.89 E-value=5.9e-23 Score=186.30 Aligned_cols=104 Identities=23% Similarity=0.399 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15468 456 TAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFD 535 (653)
Q Consensus 456 ~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~ 535 (653)
.++++..|..+++.|++ +..+++|..||+...+||||++|++||||++|++||++|.|.|+++|.+||+|||.
T Consensus 6 ~~~l~~~l~~il~~L~~-------~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~ 78 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQR-------KDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCT 78 (117)
T ss_dssp HHHHHHHHHHHHHHHHT-------SSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHh-------CcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35788999999999986 44688999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy15468 536 NACKYNEPDSHIYKDALSLQRIVLQTKMHLR 566 (653)
Q Consensus 536 Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~ 566 (653)
||++||+++|.+|++|..|++.|.+.+....
T Consensus 79 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 79 NAMIYNKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp HHHHTSCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887553
No 45
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.88 E-value=5e-23 Score=186.75 Aligned_cols=101 Identities=23% Similarity=0.362 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhh
Q psy15468 274 EQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACT 353 (653)
Q Consensus 274 ~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~ 353 (653)
....|..|++.|++... +++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.||.+
T Consensus 9 l~~~l~~il~~L~~~~~------~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~ 82 (117)
T 2i7k_A 9 LQEALNQLMRQLQRKDP------SAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMI 82 (117)
T ss_dssp HHHHHHHHHHHHHTSSG------GGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc------cHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 36788999999987654 899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 354 FNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 354 yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
||+++|.+|.+|..|++.|.+.+....
T Consensus 83 yN~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 83 YNKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp TSCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654
No 46
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.88 E-value=5e-23 Score=195.54 Aligned_cols=113 Identities=16% Similarity=0.272 Sum_probs=97.0
Q ss_pred CCCCCCCChHHH-HHHHHHHHHhhhhhcCCccccccccCCCCC--CCCccccccCCccchHHHHHHHhcCCCCChhhHHH
Q psy15468 92 RPKRKKIDPSDA-MQQIYDVIRNFKKEDGALLCDPFIRIPKKR--QEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQA 168 (653)
Q Consensus 92 ~~~~~~~~~~~~-~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~--~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~ 168 (653)
+++.+.++.+.. |+.|++.|..++ .++||+.||+.. .+||||+||++||||+||++||+++.
T Consensus 24 ~~~~r~t~~l~~~~~~il~~l~~~~------~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~--------- 88 (154)
T 4alg_A 24 KKPGRVTNQLQYLHKVVMKALWKHQ------FAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNY--------- 88 (154)
T ss_dssp --CCCCBHHHHHHHHTHHHHHHTST------TCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTC---------
T ss_pred CCCCcchHHHHHHHHHHHHHHHhCc------CchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCC---------
Confidence 334444555544 466777777764 499999999976 79999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCCCC
Q psy15468 169 DIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQS 243 (653)
Q Consensus 169 d~~l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~~~ 243 (653)
|.++++|..||+|||.||..||+++|.++++|..|++.|.+.++++.....
T Consensus 89 ------------------------Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~ 139 (154)
T 4alg_A 89 ------------------------YWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQ 139 (154)
T ss_dssp ------------------------CSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCC
T ss_pred ------------------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchhc
Confidence 999999999999999999999999999999999999999999999865433
No 47
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.88 E-value=7.2e-23 Score=190.49 Aligned_cols=101 Identities=18% Similarity=0.404 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCc
Q psy15468 100 PSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPI 179 (653)
Q Consensus 100 ~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~ 179 (653)
-...|..|++.|..++. +++|..||+...+||||+||++||||+||++||++|.
T Consensus 22 l~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~-------------------- 75 (135)
T 3mb3_A 22 WKKQCEELLNLIFQCED------SEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGN-------------------- 75 (135)
T ss_dssp HHHHHHHHHHHHHHSGG------GGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHHHHHhCCC------ChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCC--------------------
Confidence 45678899999988765 9999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccC-CCHHHHHHHHHHHHHHHHhhhcc
Q psy15468 180 DFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKR-NSQEHRDAQELMELFHSTRNKLL 239 (653)
Q Consensus 180 d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~-~s~~~~~a~~l~~~~~~~~~~~~ 239 (653)
|.++++|..||.|||.||..||++ +|.++.+|..|.+.|.+.+.+++
T Consensus 76 -------------Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~ 123 (135)
T 3mb3_A 76 -------------YESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVL 123 (135)
T ss_dssp -------------CSSHHHHHHHHHHHHHHHHHHSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 89999999999999999998764
No 48
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=185.87 Aligned_cols=103 Identities=24% Similarity=0.364 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy15468 458 ASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNA 537 (653)
Q Consensus 458 ~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na 537 (653)
.|+++|..+++.|.. +..+++|.+||+...+||||++|++||||++|++||++|.|.++++|.+||+|||.||
T Consensus 10 ~~~~~c~~il~~l~~-------~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 82 (123)
T 3q2e_A 10 NWKKQCKELVNLIFQ-------CEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNA 82 (123)
T ss_dssp CHHHHHHHHHHHHHT-------SGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------CCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 578899999999987 4568999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC-CCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 538 CKYNEP-DSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 538 ~~YN~~-~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
++||++ +|.+|.+|..|+++|++.+.++..
T Consensus 83 ~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 113 (123)
T 3q2e_A 83 KAYTPNKRSKIYSMTLRLSALFEEKMKKISS 113 (123)
T ss_dssp HHHSCCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999996 999999999999999999998865
No 49
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.88 E-value=6.7e-23 Score=200.45 Aligned_cols=99 Identities=20% Similarity=0.354 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhc--CCCCChhhHHHHHHHHhhcCC
Q psy15468 101 SDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKT--DEYDDLSDFQADIELLVVTNP 178 (653)
Q Consensus 101 ~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~--~~y~~~~~~~~d~~l~~~~~P 178 (653)
...|+.||..|..++. +++|..||+. .+||||+||++||||+||++||++ +.
T Consensus 83 ~~~c~~il~~l~~~~~------s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~------------------- 136 (184)
T 3o36_A 83 KRKCERLLLFLYCHEM------SLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSM------------------- 136 (184)
T ss_dssp HHHHHHHHHHHHHSTT------CHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCS-------------------
T ss_pred HHHHHHHHHHHHhchh------hhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCC-------------------
Confidence 3568888888887754 8999999985 599999999999999999999998 67
Q ss_pred chHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhcc
Q psy15468 179 IDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLL 239 (653)
Q Consensus 179 ~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~ 239 (653)
|.++++|.+||+|||.||..||+++|.++++|..|.+.|.+.++++.
T Consensus 137 --------------Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 137 --------------YSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp --------------CCSHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999988764
No 50
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.88 E-value=1e-22 Score=185.46 Aligned_cols=111 Identities=22% Similarity=0.421 Sum_probs=100.1
Q ss_pred CCCCCChHHHHHHHHHHHHhhhhhcCCccccccccCCCCC--CCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHH
Q psy15468 94 KRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKR--QEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIE 171 (653)
Q Consensus 94 ~~~~~~~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~--~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~ 171 (653)
+|+..++.++.+.++..+..+... .+.++||..||+.. .+||||+||++||||+||++||++|.
T Consensus 3 r~~~~~~~el~~~l~~~l~~l~~~--~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~------------ 68 (119)
T 3p1f_A 3 RKKIFKPEELRQALMPTLEALYRQ--DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQ------------ 68 (119)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTC--TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTC------------
T ss_pred ccccCCHHHHHHHHHHHHHHHHHh--CCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCC------------
Confidence 456678888888888888776542 24599999999977 89999999999999999999999999
Q ss_pred HHhhcCCchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhcc
Q psy15468 172 LLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLL 239 (653)
Q Consensus 172 l~~~~~P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~ 239 (653)
|.++++|..|++|||+||..||+++|.++++|..|.+.|.+.+.++.
T Consensus 69 ---------------------Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 69 ---------------------YQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp ---------------------CSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988764
No 51
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.88 E-value=5.8e-23 Score=187.29 Aligned_cols=108 Identities=25% Similarity=0.362 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCC--CCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHD--YPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMF 534 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~--~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf 534 (653)
+...+.|..++..|.... + +.++++|..||+... +||||++|++||||++|++||++|.|.++++|.+||+|||
T Consensus 8 ~~~l~~c~~il~~l~~~~---~-~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 83 (120)
T 3jvl_A 8 SEQLKCCSGILKEMFAKK---H-AAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMF 83 (120)
T ss_dssp CHHHHHHHHHHHHHTSGG---G-HHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc---C-ccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 355666777777766533 2 567999999999876 9999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy15468 535 DNACKYNEPDSHIYKDALSLQRIVLQTKMHLRED 568 (653)
Q Consensus 535 ~Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~~ 568 (653)
.||++||+++|.+|.+|..|+++|++.+.+++.+
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 84 SNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999999999999999988764
No 52
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=187.41 Aligned_cols=107 Identities=27% Similarity=0.450 Sum_probs=98.7
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhC--CCCCCHHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQD--GKYASLGDMEKDLILM 347 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~--~~Y~s~~ef~~Dv~Lm 347 (653)
.+..+.+.|..||..|+++. .+++|+.|++. .+|+||++|++||||+||++||++ +.|.++++|.+||+||
T Consensus 17 m~p~~~~~c~~il~~L~~~~------~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Li 89 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHE------MSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLI 89 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSG------GGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCc------cchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 35567899999999999865 49999998877 799999999999999999999998 5999999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q psy15468 348 TKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGK 383 (653)
Q Consensus 348 f~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~~ 383 (653)
|.||++||+++|.||.+|..|+++|++.+.++.+..
T Consensus 90 f~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 90 FQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999987553
No 53
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.88 E-value=1.7e-22 Score=192.58 Aligned_cols=111 Identities=28% Similarity=0.389 Sum_probs=101.8
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTK 349 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~ 349 (653)
..+++...|..+|..|...+- .+++.+++|..||+...+|+||++|++||||+||++||+++.|.++++|..||+|||.
T Consensus 22 ~~~d~~~~l~~iL~~i~~~kl-~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~ 100 (158)
T 3uv4_A 22 SMDDDQVAFSFILDNIVTQKM-MAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILA 100 (158)
T ss_dssp CCSHHHHHHHHHHHHHHHHTT-TTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHH-HcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 345668899999999887543 4567899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhc
Q psy15468 350 NACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381 (653)
Q Consensus 350 Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~ 381 (653)
||++||+++|.||.+|..|.++|...+.++..
T Consensus 101 Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~ 132 (158)
T 3uv4_A 101 NSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 132 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888753
No 54
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=185.53 Aligned_cols=99 Identities=18% Similarity=0.353 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCc
Q psy15468 100 PSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPI 179 (653)
Q Consensus 100 ~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~ 179 (653)
-..+|..|++.|..+.. +++|..||+...+||||+||++||||+||++||++|.
T Consensus 14 ~~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~-------------------- 67 (123)
T 3hme_A 14 IQQLLEHFLRQLQRKDP------HGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANE-------------------- 67 (123)
T ss_dssp HHHHHHHHHHHHHTTCT------TCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHHHHHhCCc------cHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCC--------------------
Confidence 34678888888887643 8999999999999999999999999999999999999
Q ss_pred hHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhh
Q psy15468 180 DFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNK 237 (653)
Q Consensus 180 d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~ 237 (653)
|.++++|..|++|||+||..||+++|.++++|..|.+.|.+.+.+
T Consensus 68 -------------Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 68 -------------YKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp -------------CCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987764
No 55
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=184.88 Aligned_cols=100 Identities=25% Similarity=0.367 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 273 DEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 273 ~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
...+.|..+++.|.++.. +++|..||+...+||||++|++||||+||++||++|.|.++++|..||+|||.||.
T Consensus 13 p~~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (123)
T 3hme_A 13 PIQQLLEHFLRQLQRKDP------HGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAM 86 (123)
T ss_dssp HHHHHHHHHHHHHHTTCT------TCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc------cHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 346789999999998765 89999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHh
Q psy15468 353 TFNEPGSQIYKDAKALKKLVQTKKME 378 (653)
Q Consensus 353 ~yN~~~S~i~~~A~~L~~~~~~~~~~ 378 (653)
.||+++|.+|.+|..|.+.|.+.+.+
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 87 TYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887654
No 56
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.87 E-value=2.6e-22 Score=182.74 Aligned_cols=103 Identities=23% Similarity=0.403 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccccccccccC--CCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q psy15468 273 DEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKK--RYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKN 350 (653)
Q Consensus 273 ~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~--~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~N 350 (653)
+..+.|..++..|... ++.+++|.+||+.. ++|+||++|++||||+||++||++|.|.++++|.+||+|||.|
T Consensus 11 el~~~l~~~l~~l~~~-----~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (119)
T 3p1f_A 11 ELRQALMPTLEALYRQ-----DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNN 85 (119)
T ss_dssp HHHHHHHHHHHHHHTC-----TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----CCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 3467888999998863 24599999999986 8999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 351 ACTFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 351 a~~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
|.+||+++|.+|.+|..|+++|++.+.++.
T Consensus 86 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 115 (119)
T 3p1f_A 86 AWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 115 (119)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988764
No 57
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.87 E-value=2.9e-22 Score=186.35 Aligned_cols=102 Identities=21% Similarity=0.352 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhh
Q psy15468 273 DEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352 (653)
Q Consensus 273 ~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~ 352 (653)
.....|..+++.|.++.. +++|..||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.||.
T Consensus 13 ~l~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDP------ARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCM 86 (135)
T ss_dssp HHHHHHHHHHHHHHHTCT------TCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc------chhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 456889999999999865 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 353 TFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 353 ~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
.||+++|.+|.+|..|.+.|...+++..
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (135)
T 3rcw_A 87 KYNARDTVFYRAAVRLRDQGGVVLRQAR 114 (135)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887653
No 58
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.87 E-value=3.9e-22 Score=185.51 Aligned_cols=105 Identities=25% Similarity=0.435 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15468 456 TAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFD 535 (653)
Q Consensus 456 ~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~ 535 (653)
.+++...|+.+++.|.+ +..+++|..||+...+||||++|++||||++|++||++|.|.++++|.+||+|||.
T Consensus 11 ~~~l~~~l~~il~~l~~-------~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 83 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQD-------KDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIID 83 (135)
T ss_dssp CCHHHHHHHHHHHHHHH-------TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHh-------CCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 35789999999999987 45689999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 536 NACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 536 Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
||++||+++|.+|++|..|++.|.+.+.++..
T Consensus 84 Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 84 NCMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888876654
No 59
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.87 E-value=4.9e-22 Score=190.99 Aligned_cols=103 Identities=20% Similarity=0.387 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHhccCCCCccccccccccccc--CCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q psy15468 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSK--KRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTK 349 (653)
Q Consensus 272 ~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~--~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~ 349 (653)
......|..||..|+++.. +++|..||+. ..+|+||++|++||||+||++||+++.|.++++|..||+|||.
T Consensus 20 ~~~~~~~~~il~~L~~~~~------s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (166)
T 3fkm_X 20 KQWYLLANQLILSLSKYEG------GHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFD 93 (166)
T ss_dssp HHHHHHHHHHHHHHTTSTT------GGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC------ChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 4457899999999998765 9999999874 4799999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 350 NACTFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 350 Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
||++||+++|.|+.+|..|+++|++.+.++.
T Consensus 94 Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 94 NCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999998875
No 60
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.86 E-value=5.2e-22 Score=189.17 Aligned_cols=106 Identities=25% Similarity=0.361 Sum_probs=97.3
Q ss_pred ChHHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCC
Q psy15468 99 DPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNP 178 (653)
Q Consensus 99 ~~~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P 178 (653)
++...|..||+.|...+ -.+.+.++||+.||+...+||||+||++||||+||++||+++.
T Consensus 25 d~~~~l~~iL~~i~~~k-l~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~------------------- 84 (158)
T 3uv4_A 25 DDQVAFSFILDNIVTQK-MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHK------------------- 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHT-TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTC-------------------
T ss_pred chHHHHHHHHHHHHHHH-HHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCC-------------------
Confidence 67888999999887642 2334569999999999999999999999999999999999999
Q ss_pred chHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhc
Q psy15468 179 IDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKL 238 (653)
Q Consensus 179 ~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~ 238 (653)
|.++++|..||+|||+||..||+++|.++++|..|.+.|.+.+.++
T Consensus 85 --------------Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~ 130 (158)
T 3uv4_A 85 --------------YQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEY 130 (158)
T ss_dssp --------------CSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred --------------CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988776
No 61
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=181.43 Aligned_cols=103 Identities=27% Similarity=0.481 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q psy15468 458 ASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRY--NQYEHLDEMVADFIQMFD 535 (653)
Q Consensus 458 ~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~--~~Y~s~~ef~~D~~Lmf~ 535 (653)
...+.|..|+..|.+ +..+++|..|++. .+||||++|++||||++|++||++ +.|.++++|.+||+|||.
T Consensus 20 ~~~~~c~~il~~L~~-------~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~ 91 (135)
T 2yyn_A 20 IDKRKCERLLLFLYC-------HEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQ 91 (135)
T ss_dssp HHHHHHHHHHHHHHT-------SGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-------CccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHH
Confidence 456778889988875 5679999998776 799999999999999999999998 589999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy15468 536 NACKYNEPDSHIYKDALSLQRIVLQTKMHLRED 568 (653)
Q Consensus 536 Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~~ 568 (653)
||++||+++|.+|.+|..|+++|++.+.++..+
T Consensus 92 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 124 (135)
T 2yyn_A 92 NCAEFNEPDSEVANAGIKLENYFEELLKNLYPE 124 (135)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999875
No 62
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=181.02 Aligned_cols=105 Identities=21% Similarity=0.421 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhh
Q psy15468 274 EQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACT 353 (653)
Q Consensus 274 ~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~ 353 (653)
-...+..|++.|++++|++||.++.+|+++|+++ |+||. ++||+|.+|++||++|.|+++++|..||.+||+||++
T Consensus 8 lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~NAr~ 83 (147)
T 3iu6_A 8 IQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARR 83 (147)
T ss_dssp HHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999998 89998 9999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 354 FNEPGSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 354 yN~~~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
||.+||+||.||..|+++|.....++...
T Consensus 84 yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 84 MNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999998887644
No 63
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.86 E-value=8e-22 Score=196.31 Aligned_cols=100 Identities=19% Similarity=0.376 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhc---CCCCChhhHHHHHHHHhhcC
Q psy15468 101 SDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKT---DEYDDLSDFQADIELLVVTN 177 (653)
Q Consensus 101 ~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~---~~y~~~~~~~~d~~l~~~~~ 177 (653)
...|+.||..|..++ .+++|+.||+. .+||||+||++||||+||++||++ +.
T Consensus 83 ~~~c~~il~~l~~~~------~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~------------------ 137 (207)
T 3u5n_A 83 QRKCERLLLYLYCHE------LSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQH------------------ 137 (207)
T ss_dssp HHHHHHHHHHHHTST------TCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTC------------------
T ss_pred HHHHHHHHHHHHhcc------chhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCC------------------
Confidence 456788999988765 49999999986 899999999999999999999997 56
Q ss_pred CchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhcccc-----------------CCCHHHHHHHHHHHHHHHHhhhccC
Q psy15468 178 PIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYK-----------------RNSQEHRDAQELMELFHSTRNKLLN 240 (653)
Q Consensus 178 P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~-----------------~~s~~~~~a~~l~~~~~~~~~~~~~ 240 (653)
|.++++|..||+|||+||..||+ ++|.++++|.+|...|.+.++++..
T Consensus 138 ---------------Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p 202 (207)
T 3u5n_A 138 ---------------YQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYS 202 (207)
T ss_dssp ---------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHST
T ss_pred ---------------cCCHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999 9999999999999999999998864
No 64
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.85 E-value=8.1e-22 Score=190.99 Aligned_cols=105 Identities=23% Similarity=0.365 Sum_probs=97.7
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTK 349 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~ 349 (653)
.+..+.+.|..+|..|.++. .+++|+.||+...+|+||++|++||||+||++||++|.|.++++|.+||+|||.
T Consensus 69 l~~~~~~~l~~il~~l~~~~------~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 142 (174)
T 2ri7_A 69 LTEKDYEGLKRVLRSLQAHK------MAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFD 142 (174)
T ss_dssp CCHHHHHHHHHHHHHHHTSG------GGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhh------hhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34556789999999999865 499999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 350 NACTFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 350 Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
||++||+++|.+|.+|..|+++|+++++++.
T Consensus 143 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 143 NCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887653
No 65
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.85 E-value=2.1e-21 Score=186.57 Aligned_cols=105 Identities=25% Similarity=0.407 Sum_probs=95.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCC--CCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy15468 456 TAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSR--HDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQM 533 (653)
Q Consensus 456 ~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~--~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lm 533 (653)
...|...|..|++.|.+ +..+++|..||+. ..+|+||++|++||||++|++||+++.|.++++|.+||+||
T Consensus 19 ~~~~~~~~~~il~~L~~-------~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Li 91 (166)
T 3fkm_X 19 NKQWYLLANQLILSLSK-------YEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLI 91 (166)
T ss_dssp THHHHHHHHHHHHHHTT-------STTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh-------CCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 56788889999998876 4568999999874 47999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHHHHHhhcC
Q psy15468 534 FDNACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567 (653)
Q Consensus 534 f~Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~~ 567 (653)
|.||++||+++|.+|.+|..|+++|.+.+.++.-
T Consensus 92 f~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~~ 125 (166)
T 3fkm_X 92 FDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGY 125 (166)
T ss_dssp HHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999988763
No 66
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.85 E-value=8.2e-22 Score=193.37 Aligned_cols=97 Identities=13% Similarity=0.297 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccC--CccchHHHHHHHhcC---CCCChhhHHHHHHHHhh
Q psy15468 101 SDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVT--NPIDFIKIQQKLKTD---EYDDLSDFQADIELLVV 175 (653)
Q Consensus 101 ~~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~--~PmDL~tI~~kl~~~---~y~~~~~~~~d~~l~~~ 175 (653)
...|+.||+.|..++ .++||++||+ |+||+||+ +||||+||++||+++ .
T Consensus 78 ~~~c~~iL~~l~~~~------~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~---------------- 131 (189)
T 2ro1_A 78 QRKCERVLLALFCHE------PCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPP---------------- 131 (189)
T ss_dssp HHHHHHHHHHHHHST------THHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSC----------------
T ss_pred HHHHHHHHhhcccCc------cchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcc----------------
Confidence 456889999998765 3999999998 89999998 899999999999999 8
Q ss_pred cCCchHHHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHHHhhhccCC
Q psy15468 176 TNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNP 241 (653)
Q Consensus 176 ~~P~d~~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~l~~~~~~~~~~~~~~ 241 (653)
|.++++|++||+|||+||.+|| ++|.++++|..|++.|++.++++...
T Consensus 132 -----------------Y~s~~eF~~Dv~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 132 -----------------YSSPQEFAQDVGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp -----------------CSCHHHHHHHHHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred -----------------cCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999 58889999999999999999988653
No 67
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.84 E-value=3.8e-21 Score=186.28 Aligned_cols=104 Identities=28% Similarity=0.527 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy15468 456 TAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFD 535 (653)
Q Consensus 456 ~~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~ 535 (653)
.....+.|+.+++.|.+ +..+++|.+||+...+|+||++|++||||++|++||++|.|.++++|.+||+|||.
T Consensus 70 ~~~~~~~l~~il~~l~~-------~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 142 (174)
T 2ri7_A 70 TEKDYEGLKRVLRSLQA-------HKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFD 142 (174)
T ss_dssp CHHHHHHHHHHHHHHHT-------SGGGTTTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-------hhhhhhhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34566778888888875 56799999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy15468 536 NACKYNEPDSHIYKDALSLQRIVLQTKMHLR 566 (653)
Q Consensus 536 Na~~YN~~~S~iy~dA~~L~~~~~~~~~eL~ 566 (653)
||++||+++|.+|++|..|+++|++.+.++.
T Consensus 143 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 143 NCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998887764
No 68
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.84 E-value=9.9e-21 Score=174.88 Aligned_cols=97 Identities=22% Similarity=0.288 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
...|..+++.|..+.. +++|..||+...+||||++|++||||+||++||++|.|.++++|.+||+|||.||++|
T Consensus 12 ~~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 12 RIFLRNVTHRLAIDKR------FRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHTSGG------GGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCc------cHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4567777777776654 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHH
Q psy15468 355 NEPGSQI----YKDAKALKKLVQTKKM 377 (653)
Q Consensus 355 N~~~S~i----~~~A~~L~~~~~~~~~ 377 (653)
|+++|++ +.+|..|++.+...+.
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999866 7888999988887775
No 69
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.83 E-value=9.6e-21 Score=175.00 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhhhhhcCCccccccccCCCCCCCCccccccCCccchHHHHHHHhcCCCCChhhHHHHHHHHhhcCCchH
Q psy15468 102 DAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDF 181 (653)
Q Consensus 102 ~~~~~l~~~i~~~k~~~~~~~~~~F~~~v~~~~~PdYy~iI~~PmDL~tI~~kl~~~~y~~~~~~~~d~~l~~~~~P~d~ 181 (653)
.+|..+++.|..++. ++||..||+...+||||+||++||||+||++||++|.
T Consensus 13 ~~l~~il~~l~~~~~------~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~---------------------- 64 (130)
T 3dai_A 13 IFLRNVTHRLAIDKR------FRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHK---------------------- 64 (130)
T ss_dssp HHHHHHHHHHHTSGG------GGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHcCCc------cHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCC----------------------
Confidence 455666666666553 9999999999999999999999999999999999999
Q ss_pred HHHhhhcccCcCCCHHHHHHHHHHHHHhhhccccCCCHH----HHHHHHHHHHHHHHhh
Q psy15468 182 IKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQE----HRDAQELMELFHSTRN 236 (653)
Q Consensus 182 ~~~~~~~~~~~Y~~~~~f~~D~~li~~Na~~yn~~~s~~----~~~a~~l~~~~~~~~~ 236 (653)
|.++++|..|++|||+||..||+++|++ +.+|..|.+.+...+.
T Consensus 65 -----------Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 65 -----------YLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977 6788888888887765
No 70
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.83 E-value=2.6e-20 Score=182.02 Aligned_cols=104 Identities=27% Similarity=0.437 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhC--CCCCCHHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQD--GKYASLGDMEKDLILM 347 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~--~~Y~s~~ef~~Dv~Lm 347 (653)
....+.+.|+.||..|+.+.. +++|..|++. .+|+||++|++||||+||++||++ +.|.++++|.+||+||
T Consensus 78 l~~~~~~~c~~il~~l~~~~~------s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li 150 (184)
T 3o36_A 78 LTPIDKRKCERLLLFLYCHEM------SLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLI 150 (184)
T ss_dssp CCHHHHHHHHHHHHHHHHSTT------CHHHHSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhchh------hhhhcccccc-CCCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 345668899999999999865 9999999885 599999999999999999999998 7999999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhh
Q psy15468 348 TKNACTFNEPGSQIYKDAKALKKLVQTKKMEIE 380 (653)
Q Consensus 348 f~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~ 380 (653)
|.||++||+++|.|+.+|..|+++|++.++++.
T Consensus 151 ~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 151 FQNCAEFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999998764
No 71
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=168.15 Aligned_cols=94 Identities=24% Similarity=0.342 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhh
Q psy15468 274 EQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACT 353 (653)
Q Consensus 274 ~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~ 353 (653)
....|..+++.|..+.. +++|..| +||||++|++||||+||++||.+|.|.++++|..||+|||.||.+
T Consensus 13 L~~~~~~il~~l~~~~~------~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~ 81 (131)
T 2dkw_A 13 LRLFLRDVTKRLATDKR------FNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALE 81 (131)
T ss_dssp HHHHHHHHHHHHHHSGG------GCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc------chhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35678899999988754 8999997 899999999999999999999999999999999999999999999
Q ss_pred hCCCCCH----HHHHHHHHHHHHHHHHHh
Q psy15468 354 FNEPGSQ----IYKDAKALKKLVQTKKME 378 (653)
Q Consensus 354 yN~~~S~----i~~~A~~L~~~~~~~~~~ 378 (653)
||+++|+ |+.+|..|++.+...++.
T Consensus 82 yN~~~s~~~~~i~~~A~~L~~~~~~~l~~ 110 (131)
T 2dkw_A 82 YNPDKDPGDKIIRHRACTLKDTAHAIIAA 110 (131)
T ss_dssp SCCCSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 679999999999888753
No 72
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=179.09 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=95.0
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccC--CcCCHHHHHHHhhCC---CCCCHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVID--VPIDLRTIARRIQDG---KYASLGDMEKDL 344 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk--~PmDL~tI~~kl~~~---~Y~s~~ef~~Dv 344 (653)
....+.+.|+.||..|+.+.. ++||++||+ |+||++|+ +||||+||++||+++ .|.++++|.+||
T Consensus 73 m~~~~~~~c~~iL~~l~~~~~------s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv 142 (189)
T 2ro1_A 73 LSPANQRKCERVLLALFCHEP------CRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDV 142 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHSTT------HHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcccCcc------chhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHH
Confidence 445678899999999998754 999999998 78999998 899999999999999 999999999999
Q ss_pred HHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHhhhcCC
Q psy15468 345 ILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGK 383 (653)
Q Consensus 345 ~Lmf~Na~~yN~~~S~i~~~A~~L~~~~~~~~~~i~~~~ 383 (653)
+|||+||++|| ++|.+|.+|..|+++|+++++++....
T Consensus 143 ~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 143 GRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999 589999999999999999999987654
No 73
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.80 E-value=1.4e-19 Score=180.06 Aligned_cols=106 Identities=28% Similarity=0.418 Sum_probs=98.3
Q ss_pred CChHHHHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhC---CCCCCHHHHHHHHHH
Q psy15468 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQD---GKYASLGDMEKDLIL 346 (653)
Q Consensus 270 ~~~~~~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~---~~Y~s~~ef~~Dv~L 346 (653)
....+.+.|+.||..|+++.. +++|+.|++. .+|+||++|++||||+||++||++ +.|.++++|.+||+|
T Consensus 78 ls~~~~~~c~~il~~l~~~~~------s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~l 150 (207)
T 3u5n_A 78 LSPVDQRKCERLLLYLYCHEL------SIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRL 150 (207)
T ss_dssp SCHHHHHHHHHHHHHHHTSTT------CGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccc------hhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHH
Confidence 445668899999999998754 9999999876 899999999999999999999997 799999999999999
Q ss_pred HHHhhhhhCC-----------------CCCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 347 MTKNACTFNE-----------------PGSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 347 mf~Na~~yN~-----------------~~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
||.||++||+ ++|.|+++|..|+.+|+.++.++.++
T Consensus 151 i~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 151 IFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999 99999999999999999999998765
No 74
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=165.13 Aligned_cols=99 Identities=21% Similarity=0.318 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy15468 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536 (653)
Q Consensus 457 ~~~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~N 536 (653)
..|...|..+++.|.. +..+++|..| +||||++|++||||++|++||.++.|.++++|.+||+|||.|
T Consensus 11 ~~L~~~~~~il~~l~~-------~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~N 78 (131)
T 2dkw_A 11 RELRLFLRDVTKRLAT-------DKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSN 78 (131)
T ss_dssp HHHHHHHHHHHHHHHH-------SGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------CccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 3567778888888876 4568999996 899999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCH----HHHHHHHHHHHHHHHHH-hhcC
Q psy15468 537 ACKYNEPDSH----IYKDALSLQRIVLQTKM-HLRE 567 (653)
Q Consensus 537 a~~YN~~~S~----iy~dA~~L~~~~~~~~~-eL~~ 567 (653)
|++||+++|. |+.+|..|+..+..... +|..
T Consensus 79 a~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~~ 114 (131)
T 2dkw_A 79 ALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDP 114 (131)
T ss_dssp HHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999995 67999999999987764 5543
No 75
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.26 E-value=1.2e-11 Score=120.06 Aligned_cols=91 Identities=18% Similarity=0.299 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhccCCCCcccccccccccccCCCCCcccccCCcCCHHHHHHHhhCCCCCCHHHHHHHHHHHHHhhhhh
Q psy15468 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTF 354 (653)
Q Consensus 275 ~~~~~~ll~~l~~~~d~~g~~~a~~F~~~p~~~~~PdYy~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lmf~Na~~y 354 (653)
...++.||..|..++- ++||+. | .++.||||.+|++||++|.|.++.+|..||.+||.||..|
T Consensus 77 ~~~l~~vl~~L~~~~~------s~~~~~---------y--~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~ 139 (183)
T 3lqh_A 77 QISLKQVLTALLNSRT------TSHLLR---------Y--RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINS 139 (183)
T ss_dssp HHHHHHHHHHHHTCHH------HHHHHT---------C--CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc------cHhhhh---------h--hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Confidence 4567888888887754 889876 2 2599999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhhcC
Q psy15468 355 NEPGSQIYKDAKALKKLVQTKKMEIEQG 382 (653)
Q Consensus 355 N~~~S~i~~~A~~L~~~~~~~~~~i~~~ 382 (653)
|++.+.+.+++..|+.+|.+.++++-+.
T Consensus 140 ~~~~~e~~~ag~~l~~~f~~~l~~vfpw 167 (183)
T 3lqh_A 140 DGGQPEIKKANSMVKSFFIRQMERVFPW 167 (183)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCChhhhhhhhHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999987654
No 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.22 E-value=3.1e-11 Score=117.06 Aligned_cols=92 Identities=13% Similarity=0.231 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcccccccccCcCCCCCCcccccccCccchHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy15468 459 SLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNAC 538 (653)
Q Consensus 459 ~~~~lk~l~~~l~~~~d~~g~~~ls~~F~~lP~~~~~PdYy~iIk~PmdL~~I~~kl~~~~Y~s~~ef~~D~~Lmf~Na~ 538 (653)
++..+..++..|.. +..+++|++ | .++.||||.+|++||++|.|.|+++|++||.+||.||.
T Consensus 76 l~~~l~~vl~~L~~-------~~~s~~~~~---------y--~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~ 137 (183)
T 3lqh_A 76 LQISLKQVLTALLN-------SRTTSHLLR---------Y--RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAI 137 (183)
T ss_dssp HHHHHHHHHHHHHT-------CHHHHHHHT---------C--CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-------ccccHhhhh---------h--hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Confidence 34445666666664 446888876 2 25999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy15468 539 KYNEPDSHIYKDALSLQRIVLQTKMHLRED 568 (653)
Q Consensus 539 ~YN~~~S~iy~dA~~L~~~~~~~~~eL~~~ 568 (653)
+||.+++.+.+.+..|+.+|++.++++.+.
T Consensus 138 ~~~~~~~e~~~ag~~l~~~f~~~l~~vfpw 167 (183)
T 3lqh_A 138 NSDGGQPEIKKANSMVKSFFIRQMERVFPW 167 (183)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hccCCChhhhhhhhHHHHHHHHHHHHHCCC
Confidence 999999999999999999999999988764
No 77
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=32.60 E-value=18 Score=30.41 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=12.8
Q ss_pred ecCCCCceeeeeee
Q psy15468 24 AVPGVDRLDIICIM 37 (653)
Q Consensus 24 ~~~~~~~~~~~~~~ 37 (653)
.||.|+|+|..|..
T Consensus 58 ~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 58 DVPGEEWSCSLCHV 71 (88)
T ss_dssp CCCSSSCCCCSCCC
T ss_pred CCcCCCcCCccccC
Confidence 68999999999985
No 78
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=31.35 E-value=6.4 Score=31.65 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=13.0
Q ss_pred cCCCCceeeeeeecc
Q psy15468 25 VPGVDRLDIICIMVE 39 (653)
Q Consensus 25 ~~~~~~~~~~~~~~~ 39 (653)
||.|+|||..|....
T Consensus 53 vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 53 IPEGQWLCRHCLQSR 67 (71)
T ss_dssp CCSSCCCCHHHHHHH
T ss_pred CCCCCcCCccCcCcC
Confidence 899999999997644
No 79
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=27.85 E-value=11 Score=29.14 Aligned_cols=15 Identities=20% Similarity=0.288 Sum_probs=12.9
Q ss_pred ecCCCCceeeeeeec
Q psy15468 24 AVPGVDRLDIICIMV 38 (653)
Q Consensus 24 ~~~~~~~~~~~~~~~ 38 (653)
.||.++|+|..|...
T Consensus 42 ~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 42 EIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCCSSCCCCTTTTTT
T ss_pred cCCCCccCChhhcCc
Confidence 589999999999753
No 80
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.25 E-value=12 Score=27.53 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=12.2
Q ss_pred ecCCCCceeeeeee
Q psy15468 24 AVPGVDRLDIICIM 37 (653)
Q Consensus 24 ~~~~~~~~~~~~~~ 37 (653)
.||.|+|+|..|..
T Consensus 36 ~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 36 EVPDGEWQCPACQP 49 (51)
T ss_dssp SCCSSCCSCTTTSC
T ss_pred CCCCCcEECcCccc
Confidence 68999999999963
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=27.13 E-value=13 Score=29.35 Aligned_cols=16 Identities=19% Similarity=0.077 Sum_probs=13.5
Q ss_pred eecCCCCceeeeeeec
Q psy15468 23 LAVPGVDRLDIICIMV 38 (653)
Q Consensus 23 ~~~~~~~~~~~~~~~~ 38 (653)
..||.++|+|..|...
T Consensus 44 ~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 44 TSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCCSSSCCCTTTTTC
T ss_pred CcCCCCCEECccccCC
Confidence 3689999999999754
No 82
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=25.19 E-value=13 Score=31.04 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=12.4
Q ss_pred cCCCCceeeeeeec
Q psy15468 25 VPGVDRLDIICIMV 38 (653)
Q Consensus 25 ~~~~~~~~~~~~~~ 38 (653)
||+|+|||..|...
T Consensus 62 vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 62 IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCSSCCCCHHHHHH
T ss_pred cCCCceECccccCc
Confidence 89999999999763
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=23.99 E-value=16 Score=28.28 Aligned_cols=14 Identities=14% Similarity=-0.012 Sum_probs=12.3
Q ss_pred ecCCCCceeeeeee
Q psy15468 24 AVPGVDRLDIICIM 37 (653)
Q Consensus 24 ~~~~~~~~~~~~~~ 37 (653)
.||.++|+|..|..
T Consensus 44 ~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 44 KAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCCCTTGGG
T ss_pred CCCCCceECccccc
Confidence 58999999999964
No 84
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.08 E-value=11 Score=31.38 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=13.2
Q ss_pred ecCCCCceeeeeeec
Q psy15468 24 AVPGVDRLDIICIMV 38 (653)
Q Consensus 24 ~~~~~~~~~~~~~~~ 38 (653)
.||.|+|+|..|...
T Consensus 58 ~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 58 NDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCTTCCCCCHHHHHH
T ss_pred CCCCCCeeCccccch
Confidence 599999999999763
No 85
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=21.08 E-value=18 Score=27.72 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=12.8
Q ss_pred ecCCCCceeeeeeec
Q psy15468 24 AVPGVDRLDIICIMV 38 (653)
Q Consensus 24 ~~~~~~~~~~~~~~~ 38 (653)
.+|.++|+|..|...
T Consensus 38 ~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 38 TIPKGMWICPRCQDQ 52 (60)
T ss_dssp SCCCSCCCCHHHHHH
T ss_pred CCCCCceEChhccCh
Confidence 589999999999753
Done!