RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15468
(653 letters)
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain,
chromatin, remodeler, RSC, acetylation, transcription,
chromatin regulator, nucleus, phosphorylation; HET: ALY;
1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Length = 311
Score = 165 bits (418), Expect = 4e-46
Identities = 52/343 (15%), Positives = 111/343 (32%), Gaps = 41/343 (11%)
Query: 85 ETPTMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTN 144
P + + + + FI++P ++ P Y+ +
Sbjct: 10 NAPLNPKSELFLDDWHIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQ 69
Query: 145 PIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIE 204
P+ +I+ + + D S+F D+E
Sbjct: 70 PMSINEIKSRDY----------------------------------EYEDGPSNFLLDVE 95
Query: 205 LLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDS 264
LL KN + + + +S +++ +++ L ++ +
Sbjct: 96 LLTKNCQAYNEYDSLIVKNSMQVVMLIE-------FEVLKAKNLKRNYLINSEVKAKLLH 148
Query: 265 RDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRT 324
+ + E+ + L A D L E F L K PEYY+++ P+ L
Sbjct: 149 YLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSI 208
Query: 325 IARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKF 384
+ + ++ G+Y+ + D D++L+ +NA FN+P + IYKDA L + +
Sbjct: 209 VKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPEL 268
Query: 385 TPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQE 427
+ I + + + +D +
Sbjct: 269 QDLNERGEINLEFDKFEFENYLAIGGGGPAAAGALAISALDND 311
Score = 163 bits (414), Expect = 1e-45
Identities = 53/305 (17%), Positives = 107/305 (35%), Gaps = 55/305 (18%)
Query: 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQD 331
+ + + + + + + F LPS+K +P+YY I P+ + I R +
Sbjct: 23 DWHIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRDYE 82
Query: 332 GKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSE 391
+ D+ L+TKN +NE S I K++ + L++ + +
Sbjct: 83 -YEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVL-------------- 127
Query: 392 RIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLWQVYDAIRNAKTQGVIFF 451
+ + I + ++ +
Sbjct: 128 --------------------------------------KAKNLKRNYLINSEVKAKLLHY 149
Query: 452 FFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMI 511
+ A+ +K+ +LS F L + + P+YYE++ P+ + ++
Sbjct: 150 LNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIV 209
Query: 512 ASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQT--KMHLREDE 569
L QY + + + D + +F NA +N+P + IYKDA +L K E +
Sbjct: 210 KQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPELQ 269
Query: 570 DSVPD 574
D
Sbjct: 270 DLNER 274
Score = 107 bits (268), Expect = 9e-26
Identities = 35/194 (18%), Positives = 68/194 (35%), Gaps = 19/194 (9%)
Query: 459 SLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYN 518
+ K + + + + F +LPSR +P YY I++P+ + I S+ Y
Sbjct: 25 HIPKFNRFISFTLDVLI-DKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD-YE 82
Query: 519 QYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAA 578
+ + D + N YNE DS I K+++ + ++ + + + +
Sbjct: 83 YEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINS-- 140
Query: 579 VQELLTSLFTSVYNHQKQCLGSFHVLNVDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFM 638
K +++ K + + L D + FM
Sbjct: 141 ------------EVKAKLLHYLNKLVDATEKKINQALLGASSPKN---LDDKVKLSEPFM 185
Query: 639 ELPSAKIYPEYYKV 652
EL PEYY++
Sbjct: 186 ELVDKDELPEYYEI 199
Score = 70.5 bits (172), Expect = 2e-13
Identities = 30/186 (16%), Positives = 60/186 (32%), Gaps = 33/186 (17%)
Query: 60 MGKRRRASSLTRSVDDDDDSSSHTSETPTMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDG 119
+ L + + + + K Q + +D
Sbjct: 118 VVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDK 177
Query: 120 ALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPI 179
L +PF+ + K + P Y+E+V +P+ L
Sbjct: 178 VKLSEPFMELVDKDELPEYYEIVHSPMA-------LSI---------------------- 208
Query: 180 DFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLL 239
++Q L+ +Y + DF D+ L+ +NA F ++ ++DA L F+ K
Sbjct: 209 ----VKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEF 264
Query: 240 NPQSHE 245
P+ +
Sbjct: 265 FPELQD 270
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 164 bits (416), Expect = 2e-45
Identities = 53/322 (16%), Positives = 112/322 (34%), Gaps = 41/322 (12%)
Query: 78 DSSSHTSETPTMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPS 137
+ P + + + + FI++P ++ P
Sbjct: 53 KTPHVDYNAPLNPKSELFLDDWHIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQ 112
Query: 138 YHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLS 197
Y+ + P+ +I+ + + D S
Sbjct: 113 YYYKIQQPMSINEIKSRDY----------------------------------EYEDGPS 138
Query: 198 DFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMM 257
+F D+ELL KN + + + +S +++ +++ L K N + + + + +
Sbjct: 139 NFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLH 198
Query: 258 ASETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVID 317
+ + E+ + L A D L E F L K PEYY+++
Sbjct: 199 -------YLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVH 251
Query: 318 VPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKM 377
P+ L + + ++ G+Y+ + D D++L+ +NA FN+P + IYKDA L
Sbjct: 252 SPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQ 311
Query: 378 EIEQGKFTPAGKSERIRSKRIR 399
+ + + I + +
Sbjct: 312 KEFFPELQDLNERGEINLEFDK 333
Score = 158 bits (400), Expect = 3e-43
Identities = 53/318 (16%), Positives = 110/318 (34%), Gaps = 55/318 (17%)
Query: 259 SETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDV 318
+ + + + + + + + + + F LPS+K +P+YY I
Sbjct: 60 NAPLNPKSELFLDDWHIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQ 119
Query: 319 PIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKME 378
P+ + I R + + D+ L+TKN +NE S I K++ + L++ + +
Sbjct: 120 PMSINEIKSRDYE-YEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVL- 177
Query: 379 IEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLWQVYD 438
+ +
Sbjct: 178 ---------------------------------------------------KAKNLKRNY 186
Query: 439 AIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDY 498
I + ++ + + A+ +K+ +LS F L + + P+Y
Sbjct: 187 LINSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEY 246
Query: 499 YEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIV 558
YE++ P+ + ++ L QY + + + D + +F NA +N+P + IYKDA +L
Sbjct: 247 YEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYF 306
Query: 559 LQT--KMHLREDEDSVPD 574
K E +D
Sbjct: 307 NYLIQKEFFPELQDLNER 324
Score = 102 bits (256), Expect = 6e-24
Identities = 35/194 (18%), Positives = 70/194 (36%), Gaps = 19/194 (9%)
Query: 459 SLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYN 518
+ K + + + + F +LPSR +P YY I++P+ + I S+ Y
Sbjct: 75 HIPKFNRFISFTLDVLI-DKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSR-DYE 132
Query: 519 QYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAA 578
+ + D + N YNE DS I K+++ + ++ + + + +
Sbjct: 133 YEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYL----- 187
Query: 579 VQELLTSLFTSVYNHQKQCLGSFHVLNVDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFM 638
N + + ++ + + K+ L D + FM
Sbjct: 188 ------------INSEVKAKLLHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFM 235
Query: 639 ELPSAKIYPEYYKV 652
EL PEYY++
Sbjct: 236 ELVDKDELPEYYEI 249
Score = 41.0 bits (95), Expect = 0.001
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 608 NKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652
+ + +D + F++LPS K +P+YY
Sbjct: 72 DDWHIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYK 116
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein
complex, bromodomain, transcription, transcr regulation,
chromatin regulator, transcription-C complex; 3.30A
{Homo sapiens}
Length = 292
Score = 147 bits (373), Expect = 4e-40
Identities = 58/329 (17%), Positives = 114/329 (34%), Gaps = 65/329 (19%)
Query: 54 PPKRFIMGKRRRASSLTRSVDDDDDSSSHTSETPTMQTRPKRKKIDPSDAMQQI-YDVIR 112
PK+ + K++R ++ H R++ DP + I +I
Sbjct: 8 FPKQQLPPKKKRRVG----------TTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIIN 57
Query: 113 NFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIEL 172
+ + PF + Y++++T P+D L+T
Sbjct: 58 DMRDLPNT---YPFHTPVNAKVVKDYYKIITRPMD-------LQT--------------- 92
Query: 173 LVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFH 232
+++ ++ Y +F+ +EL+VKN+ T+ + +Q +++L
Sbjct: 93 -----------LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCD 141
Query: 233 STRNKLLNPQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQNQCEDLFNAVMTSTDAD 292
+ + + + +D + +M D+
Sbjct: 142 EKLKEKEDKLARLEKAINPLLDDDD------------QVAFSFILDNIVTQKMMAVPDS- 188
Query: 293 SRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNAC 352
F +KK P+YY VI P+DL TI + I KY S D+ L+ N+
Sbjct: 189 -----WPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSV 243
Query: 353 TFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
+N P SQ K A+ + + E ++
Sbjct: 244 KYNGPESQYTKTAQEIVNVCYQTLTEYDE 272
Score = 110 bits (276), Expect = 5e-27
Identities = 46/345 (13%), Positives = 101/345 (29%), Gaps = 69/345 (20%)
Query: 237 KLLNPQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPL 296
+ L P+ D++ R + + E + N + +
Sbjct: 11 QQLPPKKKRRVGTTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNT----- 65
Query: 297 HEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNE 356
F + K +YY +I P+ L + +++
Sbjct: 66 -YPFHTPVNAKVVKDYYKIITRPM---------------DLQTLRENVR----------- 98
Query: 357 PGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDD 416
++Y + ++ + E I ++T +S D
Sbjct: 99 --KRLYPSREEFREHL------------------ELIVKNSATYNGPKHSLTQISQSMLD 138
Query: 417 ESEDDEEIDQEDPNSPLWQVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEP 476
++ + ++ + + + F + + +
Sbjct: 139 LCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAV------------- 185
Query: 477 KTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDN 536
S F ++ PDYY+VI P+D+E I + ++Y+ + + D + N
Sbjct: 186 ----PDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILAN 241
Query: 537 ACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAAVQE 581
+ KYN P+S K A + + QT E + +E
Sbjct: 242 SVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKE 286
Score = 88.9 bits (220), Expect = 1e-19
Identities = 27/192 (14%), Positives = 58/192 (30%), Gaps = 28/192 (14%)
Query: 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQY 520
M L + ++ ++ F + DYY++I +P+D++ + +R Y
Sbjct: 43 DPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLY 102
Query: 521 EHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAAVQ 580
+E + N+ YN P + + + S+ + +
Sbjct: 103 PSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKE---------------- 146
Query: 581 ELLTSLFTSVYNHQKQCLGSFHVLNVDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMEL 640
+ + + + L D+ + P F
Sbjct: 147 ---------KEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWP---FHHP 194
Query: 641 PSAKIYPEYYKV 652
+ K P+YYKV
Sbjct: 195 VNKKFVPDYYKV 206
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 145 bits (366), Expect = 2e-39
Identities = 61/331 (18%), Positives = 114/331 (34%), Gaps = 68/331 (20%)
Query: 91 TRPKRKKIDPSDAMQQIYD-VIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFI 149
R++ DP + I + +I + + PF + Y++++T P+D
Sbjct: 2 MSIHRRRTDPMVTLSSILESIINDMRDLPNT---YPFHTPVNAKVVKDYYKIITRPMD-- 56
Query: 150 KIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKN 209
L+T +++ ++ Y +F+ +EL+VKN
Sbjct: 57 -----LQT--------------------------LRENVRKRLYPSREEFREHLELIVKN 85
Query: 210 AKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDSRDSSI 269
+ T+ + +Q +++L + + + + +D
Sbjct: 86 SATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDD------------ 133
Query: 270 CTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRI 329
+ +M D+ F +KK P+YY VI P+DL TI + I
Sbjct: 134 QVAFSFILDNIVTQKMMAVPDS------WPFHHPVNKKFVPDYYKVIVNPMDLETIRKNI 187
Query: 330 QDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGK 389
KY S D+ L+ N+ +N P SQ K A+ + + E ++ T K
Sbjct: 188 SKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE-HLTQLEK 246
Query: 390 SERIRSKRIRGGQSLSAITAALESEDDESED 420
+ ALE + ES D
Sbjct: 247 DICTAKEA------------ALEEAELESLD 265
Score = 101 bits (253), Expect = 3e-24
Identities = 26/101 (25%), Positives = 44/101 (43%)
Query: 481 QLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKY 540
S F ++ PDYY+VI P+D+E I + ++Y+ + + D + N+ KY
Sbjct: 153 PDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKY 212
Query: 541 NEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAAVQE 581
N P+S K A + + QT E + +E
Sbjct: 213 NGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKE 253
Score = 88.5 bits (219), Expect = 1e-19
Identities = 27/192 (14%), Positives = 58/192 (30%), Gaps = 28/192 (14%)
Query: 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQY 520
M L + ++ ++ F + DYY++I +P+D++ + +R Y
Sbjct: 10 DPMVTLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLY 69
Query: 521 EHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAAVQ 580
+E + N+ YN P + + + S+ + +
Sbjct: 70 PSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKE---------------- 113
Query: 581 ELLTSLFTSVYNHQKQCLGSFHVLNVDNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMEL 640
+ + + + L D+ + P F
Sbjct: 114 ---------KEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWP---FHHP 161
Query: 641 PSAKIYPEYYKV 652
+ K P+YYKV
Sbjct: 162 VNKKFVPDYYKV 173
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1,
chromatin remodelling, acely-lysine binding,
protein-protein interactions; 1.50A {Homo sapiens} PDB:
3uvd_A 2h60_A
Length = 129
Score = 132 bits (335), Expect = 9e-37
Identities = 38/114 (33%), Positives = 72/114 (63%)
Query: 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQY 520
+KM+ + + + + + +GRQLS +F +LPSR + P+YYE+IRKPVD + I ++R ++Y
Sbjct: 14 KKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKY 73
Query: 521 EHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPD 574
L+++ D + + NA +N S IY+D++ LQ + + + +++DS +
Sbjct: 74 RSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGE 127
Score = 120 bits (302), Expect = 3e-32
Identities = 45/121 (37%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 271 TEDEQNQCEDLFNAVMTSTDA-DSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRI 329
+ + + + +AV+ D+ R L EVF LPS+K PEYY++I P+D + I RI
Sbjct: 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERI 68
Query: 330 QDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGK 389
++ KY SL D+EKD++L+ +NA TFN GS IY+D+ L+ + + + +IE+ + +
Sbjct: 69 RNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEE 128
Query: 390 S 390
S
Sbjct: 129 S 129
Score = 83.6 bits (207), Expect = 2e-19
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 34/159 (21%)
Query: 89 MQTRPKRKKIDPSDAMQQIYDVIRNFKKE-DGALLCDPFIRIPKKRQEPSYHEVVTNPID 147
M + + + M++I D + +K G L + FI++P +++ P Y+E+
Sbjct: 1 MAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL------ 54
Query: 148 FIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLV 207
I+ P+DF KI+++++ +Y L+D + D+ LL
Sbjct: 55 -IR--------------------------KPVDFKKIKERIRNHKYRSLNDLEKDVMLLC 87
Query: 208 KNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEG 246
+NA+TF S + D+ L +F S R K+ EG
Sbjct: 88 QNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEG 126
Score = 42.0 bits (99), Expect = 7e-05
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 609 KPLKRRLYTLCKCLMDYRDQ-DGRQPMLMFMELPSAKIYPEYYKV 652
L +++ + ++ Y+D GRQ +F++LPS K PEYY++
Sbjct: 10 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL 54
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing,
bromodomain, chromatin RE DNA-binding, nucleus,
phosphoprotein, transcription; 1.50A {Homo sapiens} PDB:
2ktb_B* 3hmf_A
Length = 120
Score = 132 bits (334), Expect = 1e-36
Identities = 54/114 (47%), Positives = 77/114 (67%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
+ E L A++ +T+ R + E+FQ LPSK +YP+YY +I PIDL+TIA+RIQ
Sbjct: 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQ 65
Query: 331 DGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKF 384
+G Y S+ M KD+ L+ KNA T+NEPGSQ++KDA ++KK+ KK EIE +
Sbjct: 66 NGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEM 119
Score = 128 bits (323), Expect = 3e-35
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Query: 454 GVTAASLQK-MRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIA 512
G + A L++ + L I +GR +S +FQ+LPS+ YPDYY +I++P+D++ IA
Sbjct: 3 GSSPAYLKEILEQLLEAIVV-ATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIA 61
Query: 513 SKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDS 571
+++ Y+ + M D + NA YNEP S ++KDA S+++I K + E +
Sbjct: 62 QRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHEMA 120
Score = 88.6 bits (220), Expect = 3e-21
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 37/151 (24%)
Query: 88 TMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPID 147
T + P K + ++Q+ + I G L+ + F ++P K Q P Y+ ++ PID
Sbjct: 1 TEGSSPAYLK----EILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPID 56
Query: 148 FIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLV 207
LKT I Q+++ Y + DI+LL
Sbjct: 57 -------LKT--------------------------IAQRIQNGSYKSIHAMAKDIDLLA 83
Query: 208 KNAKTFYKRNSQEHRDAQELMELFHSTRNKL 238
KNAKT+ + SQ +DA + ++F+ + ++
Sbjct: 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKAEI 114
Score = 48.5 bits (116), Expect = 4e-07
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 609 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652
LK L L + ++ + GR +F +LPS YP+YY +
Sbjct: 7 AYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAI 50
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 1.66A {Homo
sapiens} PDB: 3g0j_A 2yqd_A
Length = 124
Score = 128 bits (325), Expect = 2e-35
Identities = 56/108 (51%), Positives = 75/108 (69%), Gaps = 1/108 (0%)
Query: 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQY 520
QK+ +Y +K K GR+LS IF RLPSR + PDYY I+KP+DME I S + N+Y
Sbjct: 18 QKLNEVYEAVKN-YTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKY 76
Query: 521 EHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLRED 568
+ +D MV DF+ MF+NAC YNEP+S IYKDAL L +++L+T+ L D
Sbjct: 77 QDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEGD 124
Score = 124 bits (313), Expect = 8e-34
Identities = 42/123 (34%), Positives = 63/123 (51%)
Query: 259 SETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDV 318
S + S S Q + +++ AV TD R L +F LPS+ P+YY I
Sbjct: 1 SMSGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKK 60
Query: 319 PIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKME 378
P+D+ I + KY + M +D ++M NACT+NEP S IYKDA L K++ + +
Sbjct: 61 PMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRD 120
Query: 379 IEQ 381
+E
Sbjct: 121 LEG 123
Score = 91.2 bits (227), Expect = 4e-22
Identities = 25/153 (16%), Positives = 58/153 (37%), Gaps = 33/153 (21%)
Query: 86 TPTMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNP 145
+ + + + ++Y+ ++N+ + G L F+R+P + + P Y+ + P
Sbjct: 2 MSGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKP 61
Query: 146 IDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIEL 205
+D ++ I+ + ++Y D+ D +
Sbjct: 62 MD-------MEK--------------------------IRSHMMANKYQDIDSMVEDFVM 88
Query: 206 LVKNAKTFYKRNSQEHRDAQELMELFHSTRNKL 238
+ NA T+ + S ++DA L ++ TR L
Sbjct: 89 MFNNACTYNEPESLIYKDALVLHKVLLETRRDL 121
Score = 48.1 bits (115), Expect = 5e-07
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 609 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652
P++++L + + + +Y D+ GR+ +F+ LPS P+YY
Sbjct: 14 TPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLT 57
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all
alpha protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 123
Score = 127 bits (322), Expect = 4e-35
Identities = 44/111 (39%), Positives = 66/111 (59%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
Q + + V+ D+ R L EVF LPS+K PEYY++I P+D + I RI+
Sbjct: 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR 70
Query: 331 DGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
+ KY SLGD+EKD++L+ NA TFN GSQIY+D+ L+ + ++ +
Sbjct: 71 NHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121
Score = 125 bits (316), Expect = 3e-34
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQY 520
++M + +T+ + +GRQLS +F +LPSR + P+YYE+IRKPVD + I ++R ++Y
Sbjct: 16 KQMNAIIDTVIN-YKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKY 74
Query: 521 EHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDE 569
L ++ D + + NA +N S IY+D++ LQ +
Sbjct: 75 RSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKS-ARQSGPSS 122
Score = 93.2 bits (232), Expect = 9e-23
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 35/148 (23%)
Query: 91 TRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIK 150
P K+ M I D + N+K G L + FI++P +++ P Y+E++ P+D
Sbjct: 7 GSPNPPKLT--KQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVD--- 61
Query: 151 IQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNA 210
K I+++++ +Y L D + D+ LL NA
Sbjct: 62 ----FKK--------------------------IKERIRNHKYRSLGDLEKDVMLLCHNA 91
Query: 211 KTFYKRNSQEHRDAQELMELFHSTRNKL 238
+TF SQ + D+ L +F S R
Sbjct: 92 QTFNLEGSQIYEDSIVLQSVFKSARQSG 119
Score = 48.9 bits (117), Expect = 2e-07
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 609 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652
L +++ + +++Y+D GRQ +F++LPS K PEYY++
Sbjct: 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYEL 55
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo01D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.20A {Homo
sapiens}
Length = 130
Score = 127 bits (321), Expect = 8e-35
Identities = 43/125 (34%), Positives = 70/125 (56%)
Query: 257 MASETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVI 316
M S + TE+ Q L++ V + + + + E F LPSKK+YP+YY I
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQI 60
Query: 317 DVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKK 376
+PI L+ I ++++ +Y +L +E DL LM +NA +N P S IYK L++++Q KK
Sbjct: 61 KMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKK 120
Query: 377 MEIEQ 381
E+ +
Sbjct: 121 KELAR 125
Score = 126 bits (319), Expect = 1e-34
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQY 520
+ LY+T++ G+ ++ F LPS+ YPDYY+ I+ P+ ++ I +KL+ +Y
Sbjct: 20 FQSMQLYDTVRSCRN-NQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEY 78
Query: 521 EHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDED 570
E LD + D MF+NA +YN P+S IYK L LQ+++ K L +D
Sbjct: 79 ETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARRDD 128
Score = 93.2 bits (232), Expect = 1e-22
Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 33/161 (20%)
Query: 85 ETPTMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTN 144
+ + Q+YD +R+ + G L+ +PF +P K++ P Y++ +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKM 62
Query: 145 PIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIE 204
PI L+ I+ KLK EY+ L + D+
Sbjct: 63 PIS-------LQQ--------------------------IRTKLKNQEYETLDHLECDLN 89
Query: 205 LLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHE 245
L+ +NAK + NS ++ +L ++ + + +L E
Sbjct: 90 LMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARRDDIE 130
Score = 44.7 bits (106), Expect = 8e-06
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 607 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652
+ L + L + R+ G+ F LPS K YP+YY+
Sbjct: 14 GTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQ 59
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.13A {Homo
sapiens}
Length = 150
Score = 127 bits (320), Expect = 2e-34
Identities = 43/118 (36%), Positives = 70/118 (59%)
Query: 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQY 520
Q+M+IL+N + E EP +GR+L +F PS+ DYPDYY++I +P+D+++I +R ++Y
Sbjct: 27 QRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKY 86
Query: 521 EHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAA 578
+ M+ D MF NA YNE S +Y DA L++++ + + L D A
Sbjct: 87 AGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMASPA 144
Score = 116 bits (291), Expect = 1e-30
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 258 ASETEDSRDSSICTEDEQNQCEDLFNAVMTSTD-ADSRPLHEVFQLLPSKKRYPEYYDVI 316
A+ S + + + LFN V+ + + R L ++F + PSKK YP+YY +I
Sbjct: 9 ATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKII 68
Query: 317 DVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKK 376
P+DL+ I I++ KYA M +D+ LM +NA +NE GSQ+Y DA L+KL++ K+
Sbjct: 69 LEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKR 128
Query: 377 MEIEQ 381
E+
Sbjct: 129 KELGP 133
Score = 87.2 bits (216), Expect = 2e-20
Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 35/181 (19%)
Query: 77 DDSSSHTSETPTMQTRPKRKKIDPSDAMQQIYDVIRNFKKE-DGALLCDPFIRIPKKRQE 135
DS ++ + T + K KK M+ +++V+ ++ G LCD F+ P K+
Sbjct: 2 GDSMISSATSDTGSAKRKSKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDY 61
Query: 136 PSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDD 195
P Y++++ P+D LK I+ ++ D+Y
Sbjct: 62 PDYYKIILEPMD-------LKI--------------------------IEHNIRNDKYAG 88
Query: 196 LSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKL-LNPQSHEGTSQKRSMD 254
D++L+ +NA+ + + SQ + DA L +L R +L P + S ++
Sbjct: 89 EEGMIEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMASPAENLY 148
Query: 255 F 255
F
Sbjct: 149 F 149
Score = 41.7 bits (98), Expect = 1e-04
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 609 KPLKRRLYTLCKCLMDYRD-QDGRQPMLMFMELPSAKIYPEYYKV 652
K+R+ L +++ R+ GR+ +FM PS K YP+YYK+
Sbjct: 23 NIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKI 67
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent
small and homeotic disks prote homolog, lysine
N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Length = 126
Score = 125 bits (317), Expect = 3e-34
Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Query: 461 QKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQY 520
Q + + + I + + + L+ LP + DYYE I P+D+ I ++ Y
Sbjct: 12 QIFKEICDGIIS-YKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYY 70
Query: 521 EHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSV 572
+ ++ AD +++F NA KY S + +D L++ + D +
Sbjct: 71 KTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEI 122
Score = 121 bits (305), Expect = 1e-32
Identities = 25/107 (23%), Positives = 52/107 (48%)
Query: 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKY 334
+++ + +++ D+ + L LP KK+ +YY+ I P+DL TI ++I G Y
Sbjct: 11 AQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYY 70
Query: 335 ASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
++ + D++ + +NA + S + +D L+K + E
Sbjct: 71 KTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117
Score = 93.6 bits (233), Expect = 6e-23
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 33/136 (24%)
Query: 103 AMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDD 162
++I D I ++K L P + +P K++ Y+E +++P+D L T
Sbjct: 13 IFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLD-------LIT----- 60
Query: 163 LSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHR 222
I++++ T Y + F AD+ + +NA+ +Y R S R
Sbjct: 61 ---------------------IEKQILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGR 99
Query: 223 DAQELMELFHSTRNKL 238
D L + +++ R++
Sbjct: 100 DVCRLRKAYYNARHEA 115
Score = 47.4 bits (113), Expect = 9e-07
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 607 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652
L + +C ++ Y+D + + LP K +YY+
Sbjct: 6 RAARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEK 51
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; 1.63A {Homo sapiens}
Length = 116
Score = 124 bits (314), Expect = 5e-34
Identities = 40/111 (36%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 460 LQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQ 519
+ LYNTI++ + + GR L +F R P R + PDYYEV+ +P+D+ I KL+ +
Sbjct: 7 IAVCHELYNTIRD-YKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEE 65
Query: 520 YEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDED 570
Y+ ++ + ADF +F+NA Y +PDS YK A L + L+T+ + +
Sbjct: 66 YDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQKGE 116
Score = 122 bits (309), Expect = 2e-33
Identities = 34/111 (30%), Positives = 55/111 (49%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
T D C +L+N + D R L E+F P ++ P+YY+V+ PIDL I ++++
Sbjct: 3 TVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLK 62
Query: 331 DGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
+Y + + D L+ NA ++ +P S YK A L L + E Q
Sbjct: 63 MEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113
Score = 102 bits (257), Expect = 3e-26
Identities = 53/145 (36%), Positives = 79/145 (54%), Gaps = 33/145 (22%)
Query: 96 KKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKL 155
+DP ++Y+ IR++K E G LLC+ FIR PK+R +P Y+EVV+
Sbjct: 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVS------------ 49
Query: 156 KTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYK 215
PID +KIQQKLK +EYDD++ AD +LL NAK++YK
Sbjct: 50 ---------------------QPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSYYK 88
Query: 216 RNSQEHRDAQELMELFHSTRNKLLN 240
+S E++ A +L +L+ TRN+ +
Sbjct: 89 PDSPEYKAACKLWDLYLRTRNEFVQ 113
Score = 41.5 bits (98), Expect = 7e-05
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 611 LKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652
+ L + DY+D+ GR +F+ P + P+YY+V
Sbjct: 6 PIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEV 47
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Length = 147
Score = 96.9 bits (241), Expect = 7e-24
Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 10/149 (6%)
Query: 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKY 334
Q +LF +VM+ D + R + +P+ P + + P+ I + +++ +Y
Sbjct: 9 QELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPNKP--PLTFDIIRKNVENNRY 64
Query: 335 ASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIR 394
L ++ + + + A N S+IY+DA L++ + E+ + +
Sbjct: 65 RRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSPALSYT 124
Query: 395 SKRIRGGQSLSAITAALESEDDESEDDEE 423
+K L E E +E+
Sbjct: 125 TK------HLHNDVEKERKEKLPKEIEED 147
Score = 89.6 bits (222), Expect = 3e-21
Identities = 24/123 (19%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 457 AASLQK-MRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKL 515
+Q+ + L+ ++ + + GR S +P+ P++ + P+ ++I +
Sbjct: 5 TLLIQELIHNLFVSVM-SHQDDEGRCYSDSLAEIPAV--DPNFP--NKPPLTFDIIRKNV 59
Query: 516 RYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDV 575
N+Y LD ++ + A + N DS IY+DA+ LQ+ ++ + L ++ + +
Sbjct: 60 ENNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNGEILLSP 119
Query: 576 PAA 578
+
Sbjct: 120 ALS 122
Score = 81.8 bits (202), Expect = 2e-18
Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 37/175 (21%)
Query: 102 DAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYD 161
+ + ++ + + + ++G D IP P K
Sbjct: 10 ELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD-----------PNFPNK----------- 47
Query: 162 DLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEH 221
P+ F I++ ++ + Y L FQ + +++ A+ + +S+ +
Sbjct: 48 ---------------PPLTFDIIRKNVENNRYRRLDLFQEHMFEVLERARRMNRTDSEIY 92
Query: 222 RDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQN 276
DA EL + F R++L + + ++ E R + E E++
Sbjct: 93 EDAVELQQFFIKIRDELCKNGEILLSPALSYTTKHLHNDVEKERKEKLPKEIEED 147
Score = 37.2 bits (86), Expect = 0.005
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 609 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKVH 653
++ ++ L +M ++D +GR E+P+ P +
Sbjct: 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPNKP 48
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain,
histone binding, N-acetyl lysine; HET: ALY; 1.87A
{Saccharomyces cerevisiae} SCOP: a.29.2.1
Length = 121
Score = 87.0 bits (216), Expect = 1e-20
Identities = 23/92 (25%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 483 SHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE 542
+ F + ++ + PDYY+ I++P+D+ + KL N+Y+ +++ + D +F+N YN
Sbjct: 31 AWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNG 90
Query: 543 PDSHIYKDALSLQRIVLQTKMHLREDEDSVPD 574
++ YK A L++ K+ + + D
Sbjct: 91 ENTSYYKYANRLEK-FFNNKVKEIPEYSHLID 121
Score = 79.3 bits (196), Expect = 5e-18
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 274 EQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGK 333
+++ + A F +K+ P+YYD I P+DL T+ +++ K
Sbjct: 14 HDAAIQNILTELQNHAAA------WPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNK 67
Query: 334 YASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
Y + D D L+ N +N + YK A L+K K EI +
Sbjct: 68 YQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPE 115
Score = 54.2 bits (131), Expect = 3e-09
Identities = 14/65 (21%), Positives = 34/65 (52%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
+ P+D ++ KL++++Y + DF D L+ N + + N+ ++ A L + F++
Sbjct: 49 FIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNN 108
Query: 234 TRNKL 238
++
Sbjct: 109 KVKEI 113
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 121
Score = 86.7 bits (215), Expect = 2e-20
Identities = 24/96 (25%), Positives = 42/96 (43%)
Query: 483 SHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE 542
+IF + PDY + I+KP+D + L +Y + D+ DF + N KYN
Sbjct: 25 GNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNA 84
Query: 543 PDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAA 578
D+ Y+ A+ L+ R + + P++
Sbjct: 85 KDTIFYRAAVRLREQGGAVLRQARRQAEKMGSGPSS 120
Score = 77.8 bits (192), Expect = 2e-17
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 6/111 (5%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
+ + + +F P+Y D I P+D T+ + ++
Sbjct: 5 SSGFLILLRKTLEQLQ------EKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLE 58
Query: 331 DGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
+Y + D E+D L+ N +N + Y+ A L++ + +
Sbjct: 59 AYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARR 109
Score = 57.0 bits (138), Expect = 3e-10
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
+ P+DF ++Q L+ Y + DF+ D L+V N + +++ +R A L E +
Sbjct: 43 HIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGA 102
>3d7c_A General control of amino acid synthesis protein 5; GCN5,
bromodomain, structural genomics consortium, SGC,
HOST-virus interaction, nucleus; 2.06A {Homo sapiens}
SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A*
1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Length = 112
Score = 86.2 bits (214), Expect = 2e-20
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 483 SHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE 542
+ F + + PDYYEVIR P+D++ + +LR Y VAD ++ N +YN
Sbjct: 25 AWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 84
Query: 543 PDSHIYKDALSLQRIVLQ 560
PDS + A +L++
Sbjct: 85 PDSEYCRCASALEKFFYF 102
Score = 82.3 bits (204), Expect = 3e-19
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
+ ++L + + A F K P+YY+VI PIDL+T+ R++
Sbjct: 5 PDQLYTTLKNLLAQIKSHPSA------WPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLR 58
Query: 331 DGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTK 375
Y + DL + N +N P S+ + A AL+K K
Sbjct: 59 SRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFK 103
Score = 55.4 bits (134), Expect = 1e-09
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
V+ PID + ++L++ Y F AD++ ++ N + + +S+ R A L + F+
Sbjct: 43 VIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYF 102
>3rcw_A Bromodomain-containing protein 1; transcription, structural
genomics, structural consortium, SGC; 2.21A {Homo
sapiens}
Length = 135
Score = 84.8 bits (210), Expect = 1e-19
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 483 SHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE 542
+ IF + S + PDY + I+ P+D + +L Y++L E DF + DN KYN
Sbjct: 31 ARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNA 90
Query: 543 PDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAAVQEL 582
D+ Y+ A+ L+ R + DS+ A+ L
Sbjct: 91 RDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASGMHL 130
Score = 74.0 bits (182), Expect = 5e-16
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKY 334
+ + + + +F S K P+Y D I P+D T+ +R++ Y
Sbjct: 15 TVLLRSVLDQLQ------DKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGY 68
Query: 335 ASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
+L + E+D L+ N +N + Y+ A L+ + +
Sbjct: 69 KNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115
Score = 53.2 bits (128), Expect = 1e-08
Identities = 14/60 (23%), Positives = 33/60 (55%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
+ +P+DF ++++L+ Y +L +F+ D +L++ N + R++ +R A L +
Sbjct: 49 HIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGV 108
Score = 49.0 bits (117), Expect = 3e-07
Identities = 16/91 (17%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 88 TMQTRPKRKKIDP-SDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPI 146
+M+ ++ P + ++ + D +++ F + ++ P Y + + +P+
Sbjct: 1 SMEQVAMELRLTPLTVLLRSVLDQLQDKDPAR------IFAQPVSLKEVPDYLDHIKHPM 54
Query: 147 DFIKIQQKLKTDEYDDLSDFQADIELLVVTN 177
DF ++++L+ Y +L +F+ D + L++ N
Sbjct: 55 DFATMRKRLEAQGYKNLHEFEEDFD-LIIDN 84
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.35A {Homo
sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A*
3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A*
3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A*
2nxb_A ...
Length = 127
Score = 83.1 bits (206), Expect = 3e-19
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 490 PSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYK 549
+ + PDYY++I+ P+DM I +L N Y + E + DF MF N YN+P I
Sbjct: 48 AVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVL 107
Query: 550 DALSLQRIVLQTKMHLREDED 570
A +L+++ LQ K++ E+
Sbjct: 108 MAEALEKLFLQ-KINELPTEE 127
Score = 77.7 bits (192), Expect = 2e-17
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 260 ETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQL--LPSKKRYPEYYDVID 317
ET + T Q + + A FQ K P+YY +I
Sbjct: 8 ETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFA------WPFQQPVDAVKLNLPDYYKIIK 61
Query: 318 VPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKM 377
P+D+ TI +R+++ Y + + +D M N +N+PG I A+AL+KL K
Sbjct: 62 TPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 121
Query: 378 EIEQ 381
E+
Sbjct: 122 ELPT 125
Score = 56.6 bits (137), Expect = 6e-10
Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 38/149 (25%)
Query: 87 PTMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIR--IPKKRQEPSYHEVVTN 144
P + P + K + + V++ K A PF + K P Y++++
Sbjct: 6 PPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAW---PFQQPVDAVKLNLPDYYKIIKT 62
Query: 145 PIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIE 204
P+D + T I+++L+ + Y + + D
Sbjct: 63 PMD-------MGT--------------------------IKKRLENNYYWNAQECIQDFN 89
Query: 205 LLVKNAKTFYKRNSQEHRDAQELMELFHS 233
+ N + K A+ L +LF
Sbjct: 90 TMFTNCYIYNKPGDDIVLMAEALEKLFLQ 118
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2,
KIAA1 WALP4, structural genomics consortium, SGC,
transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Length = 117
Score = 82.0 bits (203), Expect = 6e-19
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 483 SHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE 542
+ F + P Y +VI+KP+D I KL QY +L+ D +FDN +NE
Sbjct: 31 AWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNE 90
Query: 543 PDSHIYKDALSLQRI 557
DS I + ++++
Sbjct: 91 DDSDIGRAGHNMRKY 105
Score = 77.3 bits (191), Expect = 2e-17
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 6/111 (5%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
+ C + + T DA F L + K P Y VI P+D TI ++
Sbjct: 11 DSKDLALCSMILTEMETHEDA------WPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLS 64
Query: 331 DGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
G+Y +L D+ L+ N TFNE S I + ++K + K + +
Sbjct: 65 SGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115
Score = 58.1 bits (141), Expect = 1e-10
Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 38/146 (26%)
Query: 88 TMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPID 147
+M + ++ S + ++ + + A PF+ + P Y +V+ P+D
Sbjct: 1 SMSVKKPKRD--DSKDLALCSMILTEMETHEDAW---PFLLPVNLKLVPGYKKVIKKPMD 55
Query: 148 FIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLV 207
T I++KL + +Y +L F D+ L+
Sbjct: 56 -------FST--------------------------IREKLSSGQYPNLETFALDVRLVF 82
Query: 208 KNAKTFYKRNSQEHRDAQELMELFHS 233
N +TF + +S R + + F
Sbjct: 83 DNCETFNEDDSDIGRAGHNMRKYFEK 108
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix
bundle, transcription; NMR {Homo sapiens}
Length = 117
Score = 82.0 bits (203), Expect = 6e-19
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 491 SRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKD 550
+ P Y +I+ P+D + K++ N Y+ ++E+ +F M NA YN+P++ YK
Sbjct: 34 TDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKA 93
Query: 551 ALSLQRIVLQTKMHLREDED 570
A L ++ R +
Sbjct: 94 AKKLLHSGMKILSQERLEHH 113
Score = 73.9 bits (182), Expect = 4e-16
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 305 SKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKD 364
+ P Y +I P+D T+ +I++ Y S+ +++ + LM NA +N+P + YK
Sbjct: 34 TDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKA 93
Query: 365 AKALKKLVQT--KKMEIE 380
AK L + +E
Sbjct: 94 AKKLLHSGMKILSQERLE 111
Score = 55.0 bits (133), Expect = 2e-09
Identities = 12/58 (20%), Positives = 35/58 (60%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELF 231
++ +P+DF +++K+K ++Y + + + + +L+ NA + K + ++ A++L+
Sbjct: 44 IIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSG 101
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics,
structural genomi consortium, SGC; 2.50A {Plasmodium
falciparum 3D7}
Length = 166
Score = 83.4 bits (206), Expect = 8e-19
Identities = 31/163 (19%), Positives = 55/163 (33%), Gaps = 17/163 (10%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLL--PSKKRYPEYYDVIDVPIDLRTIARR 328
+ L ++ +F+ L K+ P+YYDVI P+ I +
Sbjct: 19 NKQWYLLANQLILSLSKYEGG------HIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTK 72
Query: 329 IQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAG 388
++ G+YA + KD+ L+ N +N S + K ++ + + + F
Sbjct: 73 LKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYNNFILKE 132
Query: 389 KSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNS 431
K K + E ED E E N+
Sbjct: 133 KKINDMLKLVEEENI---------KWSKEKEDQIEEIDELENN 166
Score = 81.4 bits (201), Expect = 4e-18
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 490 PSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYK 549
+ + PDYY+VI+ P+ I +KL+ QY + E V D +FDN YN +S +
Sbjct: 48 AKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAI 107
Query: 550 DALSLQRIVLQTKMHLREDEDSVPD 574
+++ + + + + +
Sbjct: 108 TGKNIETYFNNQLIVMGYNNFILKE 132
Score = 56.4 bits (136), Expect = 1e-09
Identities = 21/107 (19%), Positives = 42/107 (39%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
V+ NP+ F I+ KLK +Y S+F D++L+ N + NS + + F++
Sbjct: 59 VIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNN 118
Query: 234 TRNKLLNPQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQNQCED 280
+ + M ++ E +E ++ E+
Sbjct: 119 QLIVMGYNNFILKEKKINDMLKLVEEENIKWSKEKEDQIEEIDELEN 165
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics
consortium, SGC, CECR2, CAT eye syndrome chromosome
region candidate 2, bromodomain; 1.83A {Homo sapiens}
Length = 116
Score = 81.6 bits (202), Expect = 8e-19
Identities = 24/78 (30%), Positives = 36/78 (46%)
Query: 483 SHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE 542
S F P+YY++I+ P+D+ + KL Y +E V D MF N KYN
Sbjct: 34 SWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNG 93
Query: 543 PDSHIYKDALSLQRIVLQ 560
S K + +L+R +
Sbjct: 94 ESSEYTKMSDNLERCFHR 111
Score = 78.5 bits (194), Expect = 8e-18
Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
+D+ + + V D+ F + P YY +I P+D+ ++ +++
Sbjct: 14 LDDDFTAMYKVLDVVKAHKDS------WPFLEPVDESYAPNYYQIIKAPMDISSMEKKLN 67
Query: 331 DGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTK 375
G Y + + D+ M +N +N S+ K + L++
Sbjct: 68 GGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRA 112
Score = 54.6 bits (132), Expect = 2e-09
Identities = 12/60 (20%), Positives = 29/60 (48%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
++ P+D +++KL Y +F D++ + +N + + +S+ + + L FH
Sbjct: 52 IIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHR 111
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 82.5 bits (204), Expect = 1e-18
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 490 PSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYK 549
+ PDY+++I++P+DM I +L N Y E + DF MF N YN+P I
Sbjct: 59 AVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVL 118
Query: 550 DALSLQRIVLQTKMHLREDEDSVPDVPAA 578
A +L++ + K+ E+ V
Sbjct: 119 MAQTLEK-IFLQKVASMPQEEQELVVTIP 146
Score = 75.9 bits (187), Expect = 2e-16
Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Query: 258 ASETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQL--LPSKKRYPEYYDV 315
S + + T Q + + A+ A F+ K P+Y+ +
Sbjct: 17 GSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQFA------WPFRQPVDAVKLGLPDYHKI 70
Query: 316 IDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTK 375
I P+D+ TI RR+++ Y + + +D M N +N+P I A+ L+K+ K
Sbjct: 71 IKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQK 130
Query: 376 KMEIEQGKFTPAGKSERIRSKR 397
+ Q + + K+
Sbjct: 131 VASMPQEEQELVVTIPKNSHKK 152
Score = 54.4 bits (131), Expect = 6e-09
Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 40/180 (22%)
Query: 77 DDSSSHTSETPTMQ--TRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIR--IPKK 132
+ P + PK+ + V++ K A PF + K
Sbjct: 5 HHHHHSSGLVPRGSHMSNPKKPGRVTNQLQYLHKVVMKALWKHQFAW---PFRQPVDAVK 61
Query: 133 RQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDE 192
P YH+++ P+D + T I+++L+ +
Sbjct: 62 LGLPDYHKIIKQPMD-------MGT--------------------------IKRRLENNY 88
Query: 193 YDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRS 252
Y S+ D + N + K AQ L ++F + + + ++
Sbjct: 89 YWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPKN 148
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 83.0 bits (205), Expect = 1e-18
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 481 QLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKY 540
+++ F +D PDYY VI++P+D+ + +++ YE L E VAD ++FDN Y
Sbjct: 88 KMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYY 147
Query: 541 NEPDSHIYKDALSLQRIVLQ 560
N DS Y+ A L+ +Q
Sbjct: 148 NPSDSPFYQCAEVLESFFVQ 167
Score = 79.9 bits (197), Expect = 1e-17
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 9/150 (6%)
Query: 231 FHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQNQCEDLFNAVMTSTD 290
+H +L E + S + + TE + + + ++
Sbjct: 33 YHGRCVGILQS---EAELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLKRVLRSLQAHKM 89
Query: 291 ADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKN 350
A F P+YY VI P+DL T+ R+Q Y L + D+ + N
Sbjct: 90 A------WPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDN 143
Query: 351 ACTFNEPGSQIYKDAKALKKLVQTKKMEIE 380
+N S Y+ A+ L+ K +
Sbjct: 144 CRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
Score = 55.7 bits (134), Expect = 3e-09
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
V+ P+D ++++++ Y+ L++F AD+ + N + + +S ++ A+ L F
Sbjct: 108 VIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQ 167
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1
(TAF1); structural genomics consortium, SGC; 1.89A {Homo
sapiens} PDB: 3hmh_A
Length = 158
Score = 81.8 bits (202), Expect = 2e-18
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 483 SHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE 542
S F ++ PDYY+VI P+D+E I + ++Y+ + + D + N+ KYN
Sbjct: 48 SWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107
Query: 543 PDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAAVQE 581
P+S K A + + QT E + +E
Sbjct: 108 PESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKE 146
Score = 73.3 bits (180), Expect = 2e-15
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 271 TEDEQNQCEDLFNAVMTS---TDADSRPLHEVFQLLP-SKKRYPEYYDVIDVPIDLRTIA 326
+D+Q + + ++T DS P H P +KK P+YY VI P+DL TI
Sbjct: 23 MDDDQVAFSFILDNIVTQKMMAVPDSWPFHH-----PVNKKFVPDYYKVIVNPMDLETIR 77
Query: 327 RRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
+ I KY S D+ L+ N+ +N P SQ K A+ + + E ++
Sbjct: 78 KNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 132
Score = 52.1 bits (125), Expect = 4e-08
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
V+ NP+D I++ + +Y F D+ L++ N+ + SQ + AQE++ + +
Sbjct: 66 VIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQ 125
Score = 48.7 bits (116), Expect = 7e-07
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 6/103 (5%)
Query: 77 DDSSSHTSETPTMQTRPKRKKIDPSDAMQQIYD--VIRNFKKEDGALLCDPFIRIPKKRQ 134
+ + + D A I D V + + PF K+
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMDDDQVAFSFILDNIVTQKMMAVPDSW---PFHHPVNKKF 59
Query: 135 EPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTN 177
P Y++V+ NP+D I++ + +Y F D+ L++ N
Sbjct: 60 VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVN-LILAN 101
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP,
crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST,
bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens}
PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A*
1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Length = 119
Score = 80.4 bits (199), Expect = 2e-18
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 490 PSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYK 549
P PDY+++++ P+D+ I KL QY+ + V D MF+NA YN S +YK
Sbjct: 39 PQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYK 98
Query: 550 DALSLQRI 557
L +
Sbjct: 99 FCSKLAEV 106
Score = 72.3 bits (178), Expect = 1e-15
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 265 RDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHE-VFQLLPSKKRYPEYYDVIDVPIDLR 323
R E+ + A+ D +S P + V P P+Y+D++ P+DL
Sbjct: 3 RKKIFKPEELRQALMPTLEALYRQ-DPESLPFRQPV---DPQLLGIPDYFDIVKNPMDLS 58
Query: 324 TIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
TI R++ G+Y D+ LM NA +N S++YK L ++ + + + Q
Sbjct: 59 TIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116
Score = 52.7 bits (127), Expect = 1e-08
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELF 231
+V NP+D I++KL T +Y + + D+ L+ NA + ++ S+ ++ +L E+F
Sbjct: 50 IVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVF 107
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.89A {Homo
sapiens} PDB: 2yem_A*
Length = 130
Score = 80.1 bits (198), Expect = 3e-18
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 461 QKMRILYNTIKETCEPKTGRQLSHIFQRL--PSRHDYPDYYEVIRKPVDMEMIASKLRYN 518
++++ +KE K + F + DY ++I+ P+DM I SKL
Sbjct: 22 EQLKCCSGILKEMFAKK-HAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAR 80
Query: 519 QYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDE 569
+Y E AD MF N KYN PD + A LQ V + + DE
Sbjct: 81 EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQD-VFEMRFAKMPDE 130
Score = 71.2 bits (175), Expect = 5e-15
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 310 PEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALK 369
+Y D+I P+D+ TI +++ +Y + D+ LM N +N P ++ A+ L+
Sbjct: 58 HDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQ 117
Query: 370 KLVQTKKMEIEQ 381
+ + + ++
Sbjct: 118 DVFEMRFAKMPD 129
Score = 55.4 bits (134), Expect = 2e-09
Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 35/149 (23%)
Query: 87 PTMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIR--IPKKRQEPSYHEVVTN 144
+ Q K S+ ++ +++ + A PF + + Y +++ +
Sbjct: 7 DSQQHPAPEKSSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKH 66
Query: 145 PIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIE 204
P+D + T I+ KL+ EY D +F AD+
Sbjct: 67 PMD-------MST--------------------------IKSKLEAREYRDAQEFGADVR 93
Query: 205 LLVKNAKTFYKRNSQEHRDAQELMELFHS 233
L+ N + + + A++L ++F
Sbjct: 94 LMFSNCYKYNPPDHEVVAMARKLQDVFEM 122
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
binding domain, signaling protein; 1.20A {Mus musculus}
PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Length = 120
Score = 79.6 bits (197), Expect = 4e-18
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 490 PSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYK 549
DY ++I+ P+DM I SKL +Y E AD MF N KYN PD +
Sbjct: 39 VEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVA 98
Query: 550 DALSLQRI 557
A LQ +
Sbjct: 99 MARKLQDV 106
Score = 71.2 bits (175), Expect = 3e-15
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 310 PEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALK 369
+Y D+I P+D+ TI +++ +Y + D+ LM N +N P ++ A+ L+
Sbjct: 45 HDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQ 104
Query: 370 KLVQTKKMEIEQ 381
+ + + ++
Sbjct: 105 DVFEMRFAKMPD 116
Score = 53.1 bits (128), Expect = 9e-09
Identities = 16/60 (26%), Positives = 33/60 (55%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
++ +P+D I+ KL++ EY D +F AD+ L+ N + + + A++L ++F
Sbjct: 50 IIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEM 109
Score = 51.1 bits (123), Expect = 4e-08
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 94 KRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIR--IPKKRQEPSYHEVVTNPIDFIKI 151
KI S+ ++ +++ + A PF + + Y +++ +P+D I
Sbjct: 3 MGSKI--SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 60
Query: 152 QQKLKTDEYDDLSDFQADIEL 172
+ KL++ EY D +F AD+ L
Sbjct: 61 KSKLESREYRDAQEFGADVRL 81
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9
isoform 1, LAVS3040, rhabdomyosarcoma antigen
MU-RMS-40.8; 2.23A {Homo sapiens}
Length = 123
Score = 79.3 bits (196), Expect = 5e-18
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 470 IKETCEPKTG---RQLSHIFQRLPSRHDY------------PDYYEVIRKPVDMEMIASK 514
+K + E ++ + L H ++L + + P Y +I+ P+D + K
Sbjct: 3 LKLSAENESTPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDK 62
Query: 515 LRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLR 566
+ N+Y+ + E ADF M DNA YN PD+ YK A + + R
Sbjct: 63 IVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKER 114
Score = 74.3 bits (183), Expect = 4e-16
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLP-SKKRYPEYYDVIDVPIDLRTIARRIQDGK 333
Q E + + H F P + P Y +I P+D T+ +I +
Sbjct: 15 QQLLEHFLRQLQ------RKDPHGFF-AFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANE 67
Query: 334 YASLGDMEKDLILMTKNACTFNEPGSQIYKDAKAL-----KKLVQTKKMEIEQG 382
Y S+ + + D LM NA T+N P + YK AK + K + + + + +++
Sbjct: 68 YKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMSKERLLALKRS 121
Score = 55.1 bits (133), Expect = 2e-09
Identities = 14/58 (24%), Positives = 38/58 (65%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELF 231
++ +P+DF ++ K+ +EY +++F+AD +L+ NA T+ + ++ ++ A++++
Sbjct: 49 IIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAG 106
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 77.8 bits (192), Expect = 2e-17
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 264 SRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLR 323
S ++ + + QC++L N + D+ E F+ YP+Y D+ID P+D
Sbjct: 1 SMATNYVESNWKKQCKELVNLIFQCEDS------EPFRQPVDLVEYPDYRDIIDTPMDFG 54
Query: 324 TIARRIQDGKYASLGDMEKDLILMTKNACTFNE-PGSQIYKDAKALKKLVQTKKMEIEQ 381
T+ + G Y S + KD+ L+ NA + S+IY L L + K +I
Sbjct: 55 TVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISS 113
Score = 74.3 bits (183), Expect = 3e-16
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 494 DYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE-PDSHIYKDAL 552
+YPDY ++I P+D + L Y+ E D +F NA Y S IY L
Sbjct: 39 EYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTL 98
Query: 553 SLQRI 557
L +
Sbjct: 99 RLSAL 103
Score = 49.3 bits (118), Expect = 2e-07
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTF-YKRNSQEHRDAQELMELFH 232
++ P+DF +++ L YD +F DI L+ NAK + + S+ + L LF
Sbjct: 46 IIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFE 105
Query: 233 S 233
Sbjct: 106 E 106
Score = 45.8 bits (109), Expect = 3e-06
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 136 PSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIEL 172
P Y +++ P+DF +++ L YD +F DI L
Sbjct: 41 PDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRL 77
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural
genomics, NPPSFA; 2.50A {Homo sapiens}
Length = 135
Score = 77.4 bits (191), Expect = 3e-17
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 9/119 (7%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
T ++ +CE L + + F P P+YY +I P+DL TI +R+Q
Sbjct: 18 TPIDKRKCERLLLFLYCHEMS------LAF-QDPVPLTVPDYYKIIKNPMDLSTIKKRLQ 70
Query: 331 D--GKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPA 387
+ Y+ D D L+ +N FNEP S++ L+ + + K P
Sbjct: 71 EDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRFPK 129
Score = 76.6 bits (189), Expect = 6e-17
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 481 QLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLR--YNQYEHLDEMVADFIQMFDNAC 538
++S FQ P PDYY++I+ P+D+ I +L+ Y+ Y ++ VADF +F N
Sbjct: 36 EMSLAFQD-PVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 94
Query: 539 KYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDV 575
++NEPDS + + L+ + + E P
Sbjct: 95 EFNEPDSEVANAGIKLEN-YFEELLKNLYPEKRFPKS 130
Score = 53.5 bits (129), Expect = 9e-09
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 35/150 (23%)
Query: 84 SETPTMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVT 143
S + + + + ++ ++ + +L F + P P Y++++
Sbjct: 2 SSGSSGKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSL---AF-QDPVPLTVPDYYKIIK 57
Query: 144 NPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADI 203
NP+D I+++L+ D Y DF AD
Sbjct: 58 NPMDLSTIKKRLQEDYS-------------------------------MYSKPEDFVADF 86
Query: 204 ELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
L+ +N F + +S+ +L F
Sbjct: 87 RLIFQNCAEFNEPDSEVANAGIKLENYFEE 116
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 77.3 bits (190), Expect = 1e-16
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 490 PSRHDYPDYYEVIRKPVDMEMIASKLR--YNQYEHLDEMVADFIQMFDNACKYNEPDSHI 547
P PDYY++I+ P+D+ I +L+ Y+ Y ++ VADF +F N ++NEPDS +
Sbjct: 105 PVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEV 164
Query: 548 YKDALSLQRI 557
+ L+
Sbjct: 165 ANAGIKLENY 174
Score = 71.5 bits (175), Expect = 1e-14
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 9/141 (6%)
Query: 241 PQSHEGTSQKRSMDFMMASETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVF 300
+ + SE + + T ++ +CE L + S +
Sbjct: 49 RDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTPIDKRKCERLLLFLYCH--EMSLAFQD-- 104
Query: 301 QLLPSKKRYPEYYDVIDVPIDLRTIARRIQD--GKYASLGDMEKDLILMTKNACTFNEPG 358
P P+YY +I P+DL TI +R+Q+ Y+ D D L+ +N FNEP
Sbjct: 105 ---PVPLTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPD 161
Query: 359 SQIYKDAKALKKLVQTKKMEI 379
S++ L+ + +
Sbjct: 162 SEVANAGIKLENYFEELLKNL 182
Score = 59.6 bits (144), Expect = 1e-10
Identities = 24/185 (12%), Positives = 54/185 (29%), Gaps = 36/185 (19%)
Query: 49 DCATLPPKRFIMGKRRRASSLTRSVDDDDDSSSHTSETPTMQTRPKRKKIDPSDAMQQIY 108
C +P + + + + + + + ++
Sbjct: 29 SCH-VPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTPIDKRKCE 87
Query: 109 DVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQA 168
++ + +L F + P P Y++++ NP+D I+++L+ D
Sbjct: 88 RLLLFLYCHEMSL---AF-QDPVPLTVPDYYKIIKNPMDLSTIKKRLQEDYS-------- 135
Query: 169 DIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELM 228
Y DF AD L+ +N F + +S+ +L
Sbjct: 136 -----------------------MYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLE 172
Query: 229 ELFHS 233
F
Sbjct: 173 NYFEE 177
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 74.0 bits (182), Expect = 6e-16
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 8/134 (5%)
Query: 260 ETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVP 319
+R S + + QCE+L N + D+ E F+ YP+Y D+ID P
Sbjct: 8 RRLRNRAQSYDIQAWKKQCEELLNLIFQCEDS------EPFRQPVDLLEYPDYRDIIDTP 61
Query: 320 IDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEP-GSQIYKDAKALKKLVQTKKME 378
+D T+ ++ G Y S ++ KD+ L+ N+ + S+IY + L +
Sbjct: 62 MDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISS 121
Query: 379 IEQGKFTPAGKSER 392
+ + A + +
Sbjct: 122 VLS-DYKSALRFHK 134
Score = 73.2 bits (180), Expect = 1e-15
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 494 DYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPD-SHIYKDAL 552
+YPDY ++I P+D + L YE E+ D +F N+ Y S IY +L
Sbjct: 50 EYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSL 109
Query: 553 SLQRI 557
L
Sbjct: 110 RLSAF 114
Score = 52.8 bits (127), Expect = 1e-08
Identities = 15/86 (17%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 87 PTMQTRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPI 146
P + R + + D +Q +++ + + + PF + + P Y +++ P+
Sbjct: 6 PRRRLRNRAQSYDIQAWKKQCEELLNLIFQCEDSE---PFRQPVDLLEYPDYRDIIDTPM 62
Query: 147 DFIKIQQKLKTDEYDDLSDFQADIEL 172
DF +++ L+ Y+ + D+ L
Sbjct: 63 DFATVRETLEAGNYESPMELCKDVRL 88
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 131
Score = 71.3 bits (175), Expect = 4e-15
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 480 RQLSHIFQRLPSRHDY-------PDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQ 532
L + +RL + + DY EVI++P+D+ + +K+ + Y + + D
Sbjct: 15 LFLRDVTKRLATDKRFNIFSKPVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDL 74
Query: 533 MFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLREDEDSVPDVPAAVQEL 582
+ NA +YN K L+ H + P+ +E+
Sbjct: 75 ICSNALEYNPDKDPGDKIIRHRAC-TLKDTAHAIIAAELDPEFNKLCEEI 123
Score = 67.5 bits (165), Expect = 1e-13
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 296 LHEVFQLLPSKKRY-------PEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMT 348
L +V + L + KR+ +Y +VI P+DL T+ +I Y + D KD+ L+
Sbjct: 17 LRDVTKRLATDKRFNIFSKPVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLIC 76
Query: 349 KNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTP--AGKSERIRSKRIRGG 401
NA +N K + ++ I + P E I+ G
Sbjct: 77 SNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKESGPSSG 131
Score = 54.8 bits (132), Expect = 3e-09
Identities = 13/72 (18%), Positives = 26/72 (36%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
V+ P+D + K+ Y DF DI+L+ NA + + +
Sbjct: 43 VIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHRACTLKD 102
Query: 234 TRNKLLNPQSHE 245
T + ++ +
Sbjct: 103 TAHAIIAAELDP 114
Score = 46.7 bits (111), Expect = 2e-06
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 136 PSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTN 177
Y EV+ P+D + K+ Y DF DI+ L+ +N
Sbjct: 38 SDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDID-LICSN 78
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear
coregulator cancer-associated Pro2000 protein, two AAA
DOMA containing protein; 1.95A {Homo sapiens} PDB:
3lxj_A
Length = 130
Score = 69.0 bits (169), Expect = 3e-14
Identities = 17/79 (21%), Positives = 36/79 (45%)
Query: 491 SRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKD 550
+ PDY VI++P+D+ + SK+ ++Y + + + D + NA +YN +
Sbjct: 36 DPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRL 95
Query: 551 ALSLQRIVLQTKMHLREDE 569
+ T + ++E
Sbjct: 96 IRHRACALRDTAYAIIKEE 114
Score = 64.0 bits (156), Expect = 2e-12
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 305 SKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGS----Q 360
P+Y VI P+DL ++ +I KY ++ D +D+ L+ NA +N
Sbjct: 36 DPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRL 95
Query: 361 IYKDAKALKKLVQTK 375
I A AL+
Sbjct: 96 IRHRACALRDTAYAI 110
Score = 51.3 bits (123), Expect = 4e-08
Identities = 14/72 (19%), Positives = 28/72 (38%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
V+ P+D + K+ +Y + D+ DI+L+ NA + R +
Sbjct: 46 VIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRD 105
Query: 234 TRNKLLNPQSHE 245
T ++ + E
Sbjct: 106 TAYAIIKEELDE 117
Score = 47.8 bits (114), Expect = 8e-07
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 132 KRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTN 177
+ P Y V+ P+D + K+ +Y + D+ DI+ L+ +N
Sbjct: 37 PDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDID-LICSN 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 1e-12
Identities = 76/594 (12%), Positives = 159/594 (26%), Gaps = 187/594 (31%)
Query: 146 IDFIKIQQKLKTDEYDD-LSDFQAD-IELLVVTNPIDFIKIQQKLKTDEYDD-------- 195
+DF + + + Y D LS F+ ++ + D K L +E D
Sbjct: 7 MDFETGEHQYQ---YKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAV 61
Query: 196 ---------LSDFQADI------ELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKLLN 240
L Q ++ E+L N K E R + ++ R++L N
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 241 -PQS---------------HEGTSQKRSMDF-----M-------MASETEDSRDSSI--- 269
Q + + R + +A + +
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCK 179
Query: 270 ------------CTEDE------QNQCEDL---FNAVMTSTDADSRPLHEV---FQLLPS 305
C E Q + + + + +H + + L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 306 KKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDA 365
K Y V+ + +Q+ K + ++ ++L T+ + +
Sbjct: 240 SKPYENCLLVLL---N-------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH- 288
Query: 366 KALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALE-SEDDESEDDEEI 424
++ TP + S + L+ D +
Sbjct: 289 ---------ISLDHHSMTLTPD--------------EVKSLLLKYLDCRPQDLPREVLTT 325
Query: 425 DQEDPNSPLWQVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSH 484
+P + +I A S++ ++ K K +
Sbjct: 326 ------NPR-----RL------SII-------AESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 485 IFQRLPSRHDYPDYYE---VIRKPVDMEMIASKL-----RYNQYEHLDEMVADFIQMFDN 536
L +Y ++ V I + L + +V +
Sbjct: 362 SLNVLEP-AEYRKMFDRLSVFPPSAH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 537 ACKYNEPDSHIYKDALSLQR-IVLQTKMHLR-EDEDSVPDVPAAVQELLTSLFTSVYNHQ 594
+ E I L L+ + + +H D ++P + + L Y+H
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH- 476
Query: 595 KQCLGSFHVLNVDN---KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKI 645
+G H+ N+++ L R ++ +D+R F+E KI
Sbjct: 477 ---IG-HHLKNIEHPERMTLFRMVF------LDFR----------FLE---QKI 507
Score = 61.0 bits (147), Expect = 8e-10
Identities = 45/315 (14%), Positives = 94/315 (29%), Gaps = 71/315 (22%)
Query: 109 DVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVV-TNPI----------DFIKIQQKLKT 157
++ L ++ + P EV+ TNP D + K
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQ-DLP--REVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 158 DEYDDLSD-FQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKR 216
D L+ ++ + +L P ++ +K+ +D LS F + +
Sbjct: 350 VNCDKLTTIIESSLNVL---EPAEY----RKM----FDRLSVFPPSAHIPTILLSLIWFD 398
Query: 217 NSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDFMMASETEDSRD---------- 266
+ D ++ H + L+ Q E T S+ + + E+
Sbjct: 399 VIKS--DVMVVVNKLH--KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 267 --SSICTEDEQNQCED----------LFNAVMTSTDADSRPLHEVFQLLPSKKRYPEY-- 312
+ ++D D L N R + F+ L K R+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 313 ---YDVIDVPIDLRTIARRI--QDGKY-ASLGDMEKDL------ILMTKNAC----TFNE 356
+++ L+ I D KY + + L ++ +K
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574
Query: 357 PGSQIYKDA-KALKK 370
I+++A K +++
Sbjct: 575 EDEAIFEEAHKQVQR 589
Score = 32.1 bits (72), Expect = 0.80
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 95 RKKI----DPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFI- 149
+KI +A I + ++ K P+I +P Y +V +DF+
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYK------PYIC----DNDPKYERLVNAILDFLP 553
Query: 150 KIQQKLKTDEYDDL 163
KI++ L +Y DL
Sbjct: 554 KIEENLICSKYTDL 567
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 63.8 bits (154), Expect = 9e-12
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 457 AASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLR 516
+ + + +LS FQ P P+YY++I+KP+D+ + KL+
Sbjct: 73 KTAQGLSPVDQRKCERLLLYLYCHELSIEFQE-PVPASIPNYYKIIKKPMDLSTVKKKLQ 131
Query: 517 ---YNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQR 556
Y+ D+ VAD +F N ++NE + A + +
Sbjct: 132 KKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEI 174
Score = 57.2 bits (137), Expect = 2e-09
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 304 PSKKRYPEYYDVIDVPIDLRTIARRIQ---DGKYASLGDMEKDLILMTKNACTFNEPGSQ 360
P P YY +I P+DL T+ +++Q Y D D+ L+ KN FNE
Sbjct: 105 PVPASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKV 164
Query: 361 IYKDAKALKKLVQTKKMEIEQGK 383
+ A + ++ + GK
Sbjct: 165 VQVYADTQEINLKADSEVAQAGK 187
Score = 43.7 bits (102), Expect = 5e-05
Identities = 27/188 (14%), Positives = 46/188 (24%), Gaps = 35/188 (18%)
Query: 50 CATLPPKR----FIMGKRRRASSLTRSVDDDDDSSSHTSETPTMQTRPKRKKIDPSDAMQ 105
C P + S D K+ K +
Sbjct: 22 CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQHSKKGKTAQGLSPV 81
Query: 106 QIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSD 165
R L F P P+Y++++ P+D +++KL+
Sbjct: 82 DQRKCERLLLYLYCHELSIEFQE-PVPASIPNYYKIIKKPMDLSTVKKKLQ--------- 131
Query: 166 FQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQ 225
K + Y DF AD+ L+ KN + F + A
Sbjct: 132 ---------------------KKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYAD 170
Query: 226 ELMELFHS 233
+
Sbjct: 171 TQEINLKA 178
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 58.7 bits (141), Expect = 4e-10
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 6/80 (7%)
Query: 481 QLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKL---RYNQYEHLDEMVADFIQMFDNA 537
+ +L D + +D+ +I ++L Y E D +MF
Sbjct: 92 EPCRPLHQLA--TDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQF 149
Query: 538 CKYNEPDSHIYKDALSLQRI 557
K E + + + LQR
Sbjct: 150 NKLTEDKA-DVQSIIGLQRF 168
Score = 47.2 bits (111), Expect = 3e-06
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 307 KRYPEYYDVIDVPIDLRTIARRIQD---GKYASLGDMEKDLILMTKNACTFNEPGSQIYK 363
D +DL I R+Q+ Y+S + +D+ M K E + +
Sbjct: 102 TDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKA-DVQ 160
Query: 364 DAKALKKLVQTKKMEIEQGKFTPAGKSE 391
L++ +T+ E A E
Sbjct: 161 SIIGLQRFFETRMNEAFGDTKFSAVLVE 188
Score = 42.5 bits (99), Expect = 1e-04
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 175 VTNPIDFIKIQQKLK---TDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELF 231
+D I+ +L+ + Y +F D+ + K + + + + L F
Sbjct: 111 PGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKA-DVQSIIGLQRFF 169
Query: 232 HSTRNKLL 239
+ N+
Sbjct: 170 ETRMNEAF 177
Score = 29.8 bits (66), Expect = 1.8
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 133 RQEPSYHEVVTNPIDFIKIQQKLK---TDEYDDLSDFQADIEL 172
+ +D I+ +L+ + Y +F D+
Sbjct: 102 TDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGR 144
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 57.7 bits (138), Expect = 9e-10
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 3/110 (2%)
Query: 269 ICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARR 328
C + + A+ + + + Y P+DL + R+
Sbjct: 56 TCVNCTERHPAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQ--QQPLDLEGVKRK 113
Query: 329 IQDGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKME 378
+ G Y S+ + D++ + + A + +I K +K ++ME
Sbjct: 114 MDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFI-RQME 162
Score = 53.1 bits (126), Expect = 3e-08
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 1/91 (1%)
Query: 467 YNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRK-PVDMEMIASKLRYNQYEHLDE 525
+ E + L + L + ++ P+D+E + K+ Y + E
Sbjct: 65 PAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQQQPLDLEGVKRKMDQGNYTSVLE 124
Query: 526 MVADFIQMFDNACKYNEPDSHIYKDALSLQR 556
D +++ A + I K ++
Sbjct: 125 FSDDIVKIIQAAINSDGGQPEIKKANSMVKS 155
Score = 47.7 bits (112), Expect = 2e-06
Identities = 9/59 (15%), Positives = 22/59 (37%)
Query: 173 LVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELF 231
P+D +++K+ Y + +F DI +++ A + + + F
Sbjct: 99 YRQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFF 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 4e-06
Identities = 78/521 (14%), Positives = 150/521 (28%), Gaps = 154/521 (29%)
Query: 147 DFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFI-KIQQKLKTDEYDD-----LSDFQ 200
F KI + T+ + + EL V + ++ + + K ++D L++F+
Sbjct: 36 QFNKILPE-PTEGFAADDEPTTPAEL--VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 201 ADIELLVKN-----AKTFYKRNSQEHRDAQELMELFHSTRNKLLNPQSHEGTSQKRSMDF 255
L N A + N +EL++ + + R P + S
Sbjct: 93 NCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-----AL 145
Query: 256 MMASETEDSRDSSIC-----TE---DE-QNQCEDLFNAVMTSTDADSRPLHEVFQLL--- 303
A +++ +I T+ +E + DL+ T + + L
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELR----DLYQ---TYHVLVGDLIKFSAETLSEL 198
Query: 304 -----PSKKRYPEYYDVIDVPIDLRTIARRIQDGKY-----ASLGDMEKDLILMTKNACT 353
++K + + ++++ L + D Y S LI + + A
Sbjct: 199 IRTTLDAEKVFTQGLNILEW---LENPSNT-PDKDYLLSIPISCP-----LIGVIQLAH- 248
Query: 354 FNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALES 413
Y +V K + G+ K S+ + +TA +
Sbjct: 249 --------Y--------VVTAKLLGFTPGELRSYLKGATGHSQGL--------VTAVAIA 284
Query: 414 EDDESEDDEEID--------------QED-PNSPLW--QVYDAIRNAKTQ-----GVIFF 451
E D E E PN+ L + D++ N + +
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-- 342
Query: 452 FFGVTAASLQKMRILYNTIKETCE--PKTGRQLSHIFQRLPSRHDYPDYYEVIR-KPVDM 508
+T +Q + +T P G+Q+ I S + V+ P +
Sbjct: 343 --NLTQEQVQDY------VNKTNSHLP-AGKQV-EI-----SLVNGAKNL-VVSGPPQSL 386
Query: 509 EMIASKLR-------YNQYE-HLDEMVADFIQMFD--NA---CKYNEPDSHIYKDALSLQ 555
+ LR +Q E F F + P S + L
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 556 RI----------VLQTK--MHLREDEDSVPDVPAAVQELLT 584
+ V T LR S+ V ++
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSI--SERIVDCIIR 485
Score = 49.3 bits (117), Expect = 4e-06
Identities = 45/239 (18%), Positives = 74/239 (30%), Gaps = 58/239 (24%)
Query: 290 DADS-RPL---HEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYASLGDMEKDLI 345
DA S RPL H E+ V+ VP IA ++Q+ K L
Sbjct: 2 DAYSTRPLTLSHGSL----------EH--VLLVPTASFFIASQLQE-------QFNKILP 42
Query: 346 LMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKS-----ERIRSKRIRG 400
T+ +EP + K L V + + G+F E
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFL-GYVSSLVEPSKVGQFDQVLNLCLTEFEN----CYLE 97
Query: 401 GQSLSAITAALESEDDESED----------------DEEIDQEDPNSPLWQVYDAIRNAK 444
G + A+ A L E+D + D++ NS L++ A+
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK-SNSALFR---AVGEGN 153
Query: 445 TQGVIFFFF---GVTAASLQKMRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYE 500
Q + F G T +++R LY T + + + + D +
Sbjct: 154 AQ--LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Score = 42.7 bits (100), Expect = 5e-04
Identities = 53/374 (14%), Positives = 101/374 (27%), Gaps = 147/374 (39%)
Query: 60 MGK-RRRASSLTRSVDDDDDSSSHTSET------PTMQTRPKRKKIDPSDAMQQIYDVIR 112
MG + S + V + D+ H +T + P I
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADN--HFKDTYGFSILDIVINNPVNLTI-------------- 1674
Query: 113 NFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIEL 172
+F E G RI + + +V + KI +++ +E+ F+++ L
Sbjct: 1675 HFGGEKGK-------RIRENYSAMIFETIVDGKLKTEKIFKEI--NEHSTSYTFRSEKGL 1725
Query: 173 LVVTN---P---------IDFIKIQQKLKTD---------EYDDLSDFQADIELLVKNAK 211
L T P + +K + + D EY + A L A
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY---A---A----LASLAD 1775
Query: 212 TFYKRNSQEHRDAQELMELFHSTRNKLLN---PQSHEGTSQKRSMDFMMASETEDSRDSS 268
S E E+ +F+ R + P+ G RS M+A R ++
Sbjct: 1776 VM----SIE--SLVEV--VFY--RGMTMQVAVPRDELG----RSNYGMIA--INPGRVAA 1819
Query: 269 ICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARR 328
+++ L+ + R
Sbjct: 1820 SFSQE-----------------------------------------------ALQYVVER 1832
Query: 329 IQDGKYASLGDMEKDLILMTKNACTFNEPGSQ--IYKDAKALKKLVQT----KKMEIEQG 382
+ ++ N +N Q D +AL + K +I+
Sbjct: 1833 VGK---------RTGWLVEIVN---YNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 383 KFTPAGKSERIRSK 396
+ + E +
Sbjct: 1881 ELQKSLSLEEVEGH 1894
Score = 41.2 bits (96), Expect = 0.001
Identities = 76/495 (15%), Positives = 140/495 (28%), Gaps = 187/495 (37%)
Query: 167 QADIE--LLVVTNPIDFIKIQQKLK----------TDEYDDLSDFQADIELLVKNAKTF- 213
+E LLV T F Q L+ T+ + + EL+ K F
Sbjct: 13 HGSLEHVLLVPTA--SFFIASQ-LQEQFNKILPEPTEGFAADDEPTTPAELVGK----FL 65
Query: 214 ----YKRNSQEHRDAQELMEL----F----------HSTRNKLLNPQSHEGTSQKRSMDF 255
+ +++ L F H+ KL Q ++ T K
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL--LQENDTTLVKTKELI 123
Query: 256 -------MMASETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVF--Q----- 301
+MA D + +S LF AV + L +F Q
Sbjct: 124 KNYITARIMAKRPFDKKSNSA-----------LFRAV----GEGNAQLVAIFGGQGNTDD 168
Query: 302 ----LLPSKKRYPEYYDVIDVPID-----LRTIARRIQDG-KYASLG-DMEKDLILMTKN 350
L + Y Y+ ++ I L + R D K + G ++ + L
Sbjct: 169 YFEEL---RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL------ 219
Query: 351 ACTFNEPGS---QIYKDAKA----LKKLVQTKKMEI--EQGKFTPAGKSERIRSKRIRGG 401
P + + Y + L ++Q + + FTP ++
Sbjct: 220 ----ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 402 QSLSAITAALESEDDESEDDEEIDQEDPNSPLWQ-VYDAIRNAKTQGVIFFFFGVTAASL 460
++A A+ D W+ + ++R A T + FF GV
Sbjct: 276 GLVTA--VAIAETDS-----------------WESFFVSVRKAIT---VLFFIGV--RCY 311
Query: 461 QKMRILY---NTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRY 517
+ + ++++ E G +PS P M++ +
Sbjct: 312 EAYPNTSLPPSILEDSLENNEG---------VPS----P-------------MLS--ISN 343
Query: 518 NQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSL-----QRIV------LQT-KMHL 565
E + + V + + +SL +V L + L
Sbjct: 344 LTQEQVQDYVNKT-------NSHLPAGKQVE---ISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 566 RE-------DEDSVP 573
R+ D+ +P
Sbjct: 394 RKAKAPSGLDQSRIP 408
Score = 39.3 bits (91), Expect = 0.005
Identities = 29/220 (13%), Positives = 62/220 (28%), Gaps = 65/220 (29%)
Query: 455 VTAASLQKMRILYNTIKETCE-PKT----GRQLSHIFQR-LPSRHDYPDYYEVIRKPVDM 508
+ A S + + + + +++ P QL F + LP E
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP---------EPTEGFAAD 51
Query: 509 EMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQ--TKMHLR 566
+ + E+V F+ + + ++ + L + L +L
Sbjct: 52 DEPTTPA---------ELVGKFLGYVSSLVEPSKVGQ--FDQVL---NLCLTEFENCYLE 97
Query: 567 EDEDSVPDVPAAVQELLTSLFTSVYNHQKQCLGSFHVLNVDNKPLKR------------- 613
+ D+ A +LL T++ ++ + +P +
Sbjct: 98 GN-----DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 614 --RLYTLCKCLMDYRDQDGRQ--PMLMFMELPSAKIYPEY 649
+L + G Q F EL +Y Y
Sbjct: 153 NAQLVAIF----------GGQGNTDDYFEEL--RDLYQTY 180
Score = 38.1 bits (88), Expect = 0.012
Identities = 71/525 (13%), Positives = 145/525 (27%), Gaps = 200/525 (38%)
Query: 134 QEP-SYHEVVTNPIDFI-KIQQKLKTDEYDD-----LSDFQA------DIELLVVT---- 176
EP + E+V + ++ + + K ++D L++F+ DI L
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 177 NPIDFIKIQQKLKTDEYDDLSDFQADIEL-----------LVKNAKT----FYKR----- 216
N +K ++ +K Y A I L +
Sbjct: 112 NDTTLVKTKELIKN--Y-----ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 217 NSQEHRDAQELMELF-----------HSTRNKLLNPQSHEGTSQK---RSMDFMMASETE 262
N+ ++ + EL +L+ + L ++K + ++ + E
Sbjct: 165 NTDDYFE--ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 263 DSR------DSS------IC----------------TEDEQNQC--------EDLFNAVM 286
+ S I T E + L AV
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 287 TSTDADSRP---------LHEVFQL-LPSKKRYPEYYDVIDVPIDLRTIARRIQDGKYA- 335
+ DS + +F + + + YP +P + + +G +
Sbjct: 283 IAE-TDSWESFFVSVRKAITVLFFIGVRCYEAYP----NTSLPPSILEDSLENNEGVPSP 337
Query: 336 --SLGDMEKDLILMTKNACTFNE---PGSQIY------KD-------AKALKKLVQTKKM 377
S+ ++ ++ + N N G Q+ ++L L
Sbjct: 338 MLSISNLTQEQVQDYVNK--TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL---- 391
Query: 378 EIEQGKFTPAGKSERIR-SKR-IRGGQSLSAITA---------ALES-EDDESEDDEEID 425
+ + K RI S+R ++ + + A + D +++ +
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 426 QEDPNSPLWQVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKETCEPKTGRQLSHI 485
+D P VYD + +R+L +I E I
Sbjct: 452 AKDIQIP---VYD-TFDGSD-----------------LRVLSGSISER-----------I 479
Query: 486 FQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADF 530
+IR PV E ++ + H + DF
Sbjct: 480 VD------------CIIRLPVKWET-TTQFKAT---H----ILDF 504
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 31.2 bits (70), Expect = 1.1
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 14/61 (22%)
Query: 363 KDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDE 422
K A K KK+ EQ + + + L+A+ ++ ++DD+ E+D+
Sbjct: 258 KKEPATHKRYNLKKLTYEQ-------RKASLVER-------LNALNSSAGADDDDEEEDD 303
Query: 423 E 423
E
Sbjct: 304 E 304
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.9
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 19/49 (38%)
Query: 364 DAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALE 412
+ +ALKKL + K+ + S +L AI A +E
Sbjct: 18 EKQALKKLQASLKL------YAD--DS----------APAL-AIKATME 47
Score = 27.6 bits (60), Expect = 7.9
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 531 IQMFDNACKYNEPDSHIYKDALSLQRIV 558
++ + K DS AL+++ +
Sbjct: 22 LKKLQASLKLYADDS---APALAIKATM 46
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.5 bits (63), Expect = 5.9
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 31/128 (24%)
Query: 463 MRILYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVD-----------MEMI 511
+++ Y++ K S ++P E+ E I
Sbjct: 120 IQVNYSSEV-----KENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENI 174
Query: 512 A----SKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQTKMHLRE 567
A + + D + + C + + S +Y +Q ++
Sbjct: 175 AIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLY----YVQ-------FFFKQ 223
Query: 568 DEDSVPDV 575
E DV
Sbjct: 224 AEQEQADV 231
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 28.9 bits (65), Expect = 6.3
Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 8/87 (9%)
Query: 391 ERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSPLWQVYDAIRNAKTQGVIF 450
G + + A D+ E N + + AI A +
Sbjct: 199 GIRAGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVN--VLRPTVAI--AVYITFVA 254
Query: 451 FFFG----VTAASLQKMRILYNTIKET 473
+ AA +Q+ ++E
Sbjct: 255 HALQTCSGIRAALVQQPDYAELFVQEV 281
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 28.8 bits (65), Expect = 7.2
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 373 QTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAITAALESEDDESEDDEEIDQEDPNSP 432
+ K + +E+ + + S + + S ++ + E+ Q DPNSP
Sbjct: 28 EKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPNSP 87
Query: 433 LWQV 436
L+ V
Sbjct: 88 LYSV 91
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 28.1 bits (63), Expect = 7.9
Identities = 15/89 (16%), Positives = 31/89 (34%)
Query: 348 TKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQGKFTPAGKSERIRSKRIRGGQSLSAI 407
T + + + L + K + +E+ + + S +
Sbjct: 3 TDSWALAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLL 62
Query: 408 TAALESEDDESEDDEEIDQEDPNSPLWQV 436
+ S ++ + E+ Q DPNSPL+ V
Sbjct: 63 NKLIRSNLVDNTNQVEVLQRDPNSPLYSV 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,952,646
Number of extensions: 607006
Number of successful extensions: 1697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1616
Number of HSP's successfully gapped: 193
Length of query: 653
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 553
Effective length of database: 3,909,693
Effective search space: 2162060229
Effective search space used: 2162060229
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)